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CMakeLists.txt
alignall.cpp
alignbykmer.cpp
apply.cpp
clusthash.cpp
compress.cpp
convert2fasta.cpp
convertalignments.cpp
convertca3m.cpp
convertkb.cpp
convertmsa.cpp
convertprofiledb.cpp
countkmer.cpp
createdb.cpp
createseqfiledb.cpp
createsubdb.cpp
createtsv.cpp
dbtype.cpp
diffseqdbs.cpp
diskspaceavail.cpp
expandaln.cpp
extractalignedregion.cpp
extractdomains.cpp
extractframes.cpp
extractorfs.cpp
filterdb.cpp
filterdb.h
gff2db.cpp
indexdb.cpp
maskbygff.cpp
masksequence.cpp
mergeclusters.cpp
mergedbs.cpp
mergeresultsbyset.cpp
msa2profile.cpp
mvdb.cpp
offsetalignment.cpp
orftocontig.cpp
prefixid.cpp
profile2cs.cpp
profile2pssm.cpp
profile2seq.cpp
proteinaln2nucl.cpp
result2flat.cpp
result2msa.cpp
result2pp.cpp
result2profile.cpp
result2rbh.cpp
result2repseq.cpp
result2stats.cpp
result2stats.h
reverseseq.cpp
rmdb.cpp
sortresult.cpp
splitdb.cpp
splitsequence.cpp
subtractdbs.cpp
summarizealis.cpp
summarizeheaders.cpp
summarizeresult.cpp
summarizetabs.cpp
swapresults.cpp
touchdb.cpp
transitivealign.cpp
translateaa.cpp
translatenucs.cpp
tsv2db.cpp
versionstring.cpp
view.cpp