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..
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benchmark
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definitions
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vae
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apa_max_isoform_create_dataset_sample.ipynb
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apa_max_isoform_create_dataset_strong.ipynb
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seqprop_aparent_cleavage_optimization.ipynb
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seqprop_aparent_cleavage_optimization_init_sequences.ipynb
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seqprop_aparent_griptag_optimization.ipynb
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seqprop_aparent_griptag_optimization_punish_upstream_c.ipynb
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seqprop_aparent_griptag_optimization_punish_upstream_c_softer.ipynb
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seqprop_aparent_isoform_optimization.ipynb
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seqprop_aparent_isoform_optimization_benchmark_earthmover.ipynb
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seqprop_aparent_isoform_optimization_benchmark_earthmover_elbo_20000_updates.ipynb
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seqprop_aparent_isoform_optimization_benchmark_earthmover_weak_balaji_elbo_5000_updates_95th_perc.ipynb
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seqprop_aparent_isoform_optimization_eval_instancenorm_earthmover.ipynb
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seqprop_aparent_isoform_optimization_eval_instancenorm_earthmover_gradient_estimators.ipynb
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seqprop_aparent_isoform_optimization_eval_instancenorm_earthmover_vs_evolution_and_gumbel.ipynb
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seqprop_aparent_isoform_optimization_eval_instancenorm_earthmover_w_entropy_penalty.ipynb
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seqprop_aparent_isoform_optimization_eval_instancenorm_sgd_lr_earthmover.ipynb
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seqprop_aparent_isoform_optimization_eval_steps_instancenorm_earthmover.ipynb
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seqprop_aparent_isoform_optimization_eval_steps_pwm_earthmover.ipynb
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seqprop_aparent_isoform_optimization_eval_steps_singlesample_earthmover.ipynb
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seqprop_aparent_isoform_optimization_sample.ipynb
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