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.gitignore
Makefile
bittest.cc
consume_prof.cc
counting.cc
counting.hh
error.cc
error.hh
get_version.py
graphtest.cc
hashbits.cc
hashbits.hh
hashtable.cc
hashtable.hh
ht-diff.cc
khmer.hh
khmer_config.cc
khmer_config.hh
khmer_exception.hh
kmer_hash.cc
kmer_hash.hh
labelhash.cc
labelhash.hh
perf_metrics.cc
perf_metrics.hh
primes.hh
read_aligner.cc
read_aligner.hh
read_aligner_test.sh
read_parsers.cc
read_parsers.hh
scoringmatrix.cc
scoringmatrix.hh
subset.cc
subset.hh
test-CacheManager.cc
test-Colors.cc
test-HashTables.cc
test-Parser.cc
test-StreamReader.cc
test_read_aligner.cc
thread_id_map.cc
thread_id_map.hh
trace_logger.cc
trace_logger.hh