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..
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deprecated
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__init__.py
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adapters.fa
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base_step.py
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clustmap_across_denovo.py
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clustmap_across_reference.py
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clustmap_within_both.py
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clustmap_within_denovo.py
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clustmap_within_denovo_utils.py
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clustmap_within_reference.py
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clustmap_within_reference_utils.py
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consens_utils.py
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demux_raw2.py
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demux_raw_barmatching.py
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demux_sorted.py
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s1_demux.py
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s2_trim_reads.py
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s3_clustmap_within.py
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s4_joint_estimate.py
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s5_consensus.py
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s6_clustmap_across.py
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s7_assemble.py
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utils.py
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write_outputs_base.py
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write_outputs_converter.py
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write_outputs_new_edge_trim.py
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write_outputs_new_vcf.py
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write_outputs_processor.py
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write_outputs_to_loci.py
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write_outputs_to_seqs.py
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write_outputs_to_snps.py
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write_outputs_vcf.py
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write_outputs_vcf_depths.py
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