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..
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Example-SHOGUN-Run-TCGA-Lung-Cancer.sh
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Pull_metadata_from_Firehose.sh
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kraken_translate.sh
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run_download.sh
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run_flagstat_stats.sh
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sum_read_counts.sh
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tcga_bwa_alignment.sh
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tcga_filter_Kraken_MPA.sh
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tcga_full_biom_diversity.sh
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tcga_make_biom_table.py
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tcga_make_biom_table.sh
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tcga_make_biom_table_from_Kraken_output.sh
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tcga_make_biom_table_per_disease_type.sh
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tcga_merge_biom_tables.sh
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