Jupyter Notebook Viewer

Name
..
add_alpha_to_mapping_file.rst
add_qiime_labels.rst
adjust_seq_orientation.rst
align_seqs.rst
alpha_diversity.rst
alpha_diversity_metrics.rst
alpha_rarefaction.rst
ampliconnoise.rst
assign_taxonomy.rst
beta_diversity.rst
beta_diversity_metrics.rst
beta_diversity_through_plots.rst
beta_significance.rst
blast_wrapper.rst
categorized_dist_scatterplot.rst
check_id_map.rst
clean_raxml_parsimony_tree.rst
cluster_quality.rst
collate_alpha.rst
compare_3d_plots.rst
compare_alpha_diversity.rst
compare_categories.rst
compare_distance_matrices.rst
compare_taxa_summaries.rst
compute_core_microbiome.rst
conditional_uncovered_probability.rst
consensus_tree.rst
convert_fastaqual_fastq.rst
convert_fastaqual_to_fastq.rst
convert_otu_table_to_unifrac_sample_mapping.rst
convert_unifrac_sample_mapping_to_otu_table.rst
core_qiime_analyses.rst
count_seqs.rst
cytoscape_usage.rst
demultiplex_fasta.rst
denoise_wrapper.rst
denoiser.rst
denoiser_preprocess.rst
denoiser_worker.rst
detrend.rst
dissimilarity_mtx_stats.rst
distance_matrix_from_mapping.rst
exclude_seqs_by_blast.rst
extract_seqs_by_sample_id.rst
filter_alignment.rst
filter_distance_matrix.rst
filter_fasta.rst
filter_otus_by_sample.rst
filter_otus_from_otu_table.rst
filter_samples_from_otu_table.rst
filter_taxa_from_otu_table.rst
filter_tree.rst
fix_arb_fasta.rst
identify_chimeric_seqs.rst
identify_missing_files.rst
index.rst
inflate_denoiser_output.rst
insert_seqs_into_tree.rst
jackknifed_beta_diversity.rst
load_remote_mapping_file.rst
make_2d_plots.rst
make_3d_plots.rst
make_bootstrapped_tree.rst
make_distance_boxplots.rst
make_distance_comparison_plots.rst
make_distance_histograms.rst
make_fastq.rst
make_library_id_lists.rst
make_otu_heatmap.rst
make_otu_heatmap_html.rst
make_otu_network.rst
make_otu_table.rst
make_per_library_sff.rst
make_phylogeny.rst
make_prefs_file.rst
make_qiime_py_file.rst
make_qiime_rst_file.rst
make_rarefaction_plots.rst
make_tep.rst
map_reads_to_reference.rst
merge_mapping_files.rst
merge_otu_maps.rst
merge_otu_tables.rst
multiple_rarefactions.rst
multiple_rarefactions_even_depth.rst
neighbor_joining.rst
nmds.rst
otu_category_significance.rst
parallel_align_seqs_pynast.rst
parallel_alpha_diversity.rst
parallel_assign_taxonomy_blast.rst
parallel_assign_taxonomy_rdp.rst
parallel_beta_diversity.rst
parallel_blast.rst
parallel_identify_chimeric_seqs.rst
parallel_map_reads_to_reference.rst
parallel_multiple_rarefactions.rst
parallel_pick_otus_blast.rst
parallel_pick_otus_trie.rst
parallel_pick_otus_uclust_ref.rst
per_library_stats.rst
pick_otus.rst
pick_otus_through_otu_table.rst
pick_reference_otus_through_otu_table.rst
pick_rep_set.rst
pick_subsampled_reference_otus_through_otu_table.rst
plot_rank_abundance_graph.rst
plot_semivariogram.rst
plot_taxa_summary.rst
poller.rst
poller_example.rst
pool_by_metadata.rst
preferences_file.rst
principal_coordinates.rst
print_qiime_config.rst
process_iseq.rst
process_qseq.rst
process_sff.rst
quality_scores_plot.rst
relatedness.rst
shared_phylotypes.rst
simsam.rst
single_rarefaction.rst
sort_otu_table.rst
split_fasta_on_sample_ids.rst
split_libraries.rst
split_libraries_fastq.rst
split_otu_table.rst
split_otu_table_by_taxonomy.rst
start_parallel_jobs.rst
start_parallel_jobs_sc.rst
start_parallel_jobs_torque.rst
submit_to_mgrast.rst
subsample_fasta.rst
summarize_otu_by_cat.rst
summarize_taxa.rst
summarize_taxa_through_plots.rst
supervised_learning.rst
transform_coordinate_matrices.rst
tree_compare.rst
trflp_file_to_otu_table.rst
trim_sff_primers.rst
truncate_fasta_qual_files.rst
truncate_reverse_primer.rst
unweight_fasta.rst
upgma_cluster.rst
validate_demultiplexed_fasta.rst