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..
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denoiser
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parallel
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pycogent_backports
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support_files
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__init__.py
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add_qiime_labels.py
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adjust_seq_orientation.py
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align_seqs.py
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alpha_diversity.py
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assign_taxonomy.py
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barcode.py
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beta_diversity.py
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beta_metrics.py
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biplots.py
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categorized_dist_scatterplot.py
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check_id_map.py
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clean_raxml_parsimony_tree.py
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cluster_quality.py
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collate_alpha.py
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colors.py
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compare_alpha_diversity.py
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compare_distance_matrices.py
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conditional_uncovered_probability.py
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convert_fastaqual_to_fastq.py
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denoise_wrapper.py
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distance_matrix_from_mapping.py
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exclude_seqs_by_blast.py
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filter.py
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filter_alignment.py
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filter_otus_by_sample.py
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format.py
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golay.py
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group.py
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hamming.py
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hierarchical_cluster.py
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identify_chimeric_seqs.py
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insert_seqs_into_tree.py
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longitudinal_otu_category_significance.py
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make_2d_plots.py
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make_3d_plots.py
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make_bootstrapped_tree.py
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make_distance_histograms.py
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make_fastq.py
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make_library_id_lists.py
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make_otu_heatmap.py
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make_otu_heatmap_html.py
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make_otu_network.py
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make_otu_table.py
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make_per_library_sff.py
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make_phylogeny.py
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make_rarefaction_plots.py
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merge_mapping_files.py
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nmds.py
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otu_category_significance.py
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parse.py
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pick_otus.py
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pick_rep_set.py
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pick_subsampled_reference_otus_through_otu_table.py
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plot_rank_abundance_graph.py
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plot_semivariogram.py
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plot_taxa_summary.py
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principal_coordinates.py
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process_sff.py
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quality.py
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quality_scores_plot.py
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rarefaction.py
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relatedness_library.py
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shared_phylotypes.py
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simsam.py
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sort.py
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split.py
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split_libraries.py
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split_libraries_fastq.py
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stats.py
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submit_to_mgrast.py
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summarize_taxa.py
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supervised_learning.py
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test.py
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transform_coordinate_matrices.py
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tree_compare.py
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trim_sff_primers.py
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truncate_fasta_qual_files.py
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truncate_reverse_primer.py
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util.py
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validate_demultiplexed_fasta.py
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workflow.py
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