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..
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add_taxa.py
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adjust_seq_orientation.py
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align_seqs.py
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alpha_diversity.py
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alpha_rarefaction.py
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assign_taxonomy.py
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beta_diversity.py
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beta_diversity_through_3d_plots.py
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blast_wrapper.py
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check_id_map.py
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collate_alpha.py
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compare_3d_plots.py
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convert_unifrac_sample_mapping_to_otu_table.py
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denoise.py
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dissimilarity_mtx_stats.py
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exclude_seqs_by_blast.py
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extract_seqs_by_sample_id.py
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filter_alignment.py
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filter_by_metadata.py
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filter_otu_table.py
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filter_otus_by_sample.py
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fix_arb_fasta.py
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identify_chimeric_seqs.py
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jackknifed_upgma.py
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make_2d_plots.py
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make_3d_plots.py
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make_bootstrapped_tree.py
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make_distance_histograms.py
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make_fastq.py
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make_library_id_lists.py
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make_otu_heatmap_html.py
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make_otu_network.py
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make_otu_table.py
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make_per_library_sff.py
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make_phylogeny.py
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make_pie_charts.py
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make_prefs_file.py
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make_qiime_py_file.py
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make_qiime_rst_file.py
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make_rarefaction_averages.py
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make_rarefaction_plots.py
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make_sra_submission.py
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merge_denoiser_output.py
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merge_mapping_files.py
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merge_otu_maps.py
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multiple_rarefactions.py
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multiple_rarefactions_even_depth.py
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otu_category_significance.py
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parallel_align_seqs_pynast.py
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parallel_alpha_diversity.py
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parallel_assign_taxonomy_blast.py
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parallel_assign_taxonomy_rdp.py
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parallel_beta_diversity.py
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parallel_blast.py
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parallel_multiple_rarefactions.py
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parallel_pick_otus_blast.py
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per_library_stats.py
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pick_otus.py
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pick_otus_through_otu_table.py
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pick_rep_set.py
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poller.py
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poller_example.py
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principal_coordinates.py
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print_qiime_config.py
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process_sff.py
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single_rarefaction.py
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split_libraries.py
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split_libraries_illumina.py
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sra_spreadsheet_to_map_files.py
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start_parallel_jobs.py
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summarize_otu_by_cat.py
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summarize_taxa.py
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transform_coordinate_matrices.py
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tree_compare.py
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trim_sff_primers.py
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upgma_cluster.py
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