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..
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data
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diagrams
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README.md
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cgpdisimExpandParam.m
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cgpdisimExtractParam.m
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cgpdisimLogLikeGradients.m
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cgpdisimLogLikelihood.m
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cgpsimExpandParam.m
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cgpsimExtractParam.m
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cgpsimLogLikeGradients.m
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cgpsimLogLikelihood.m
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chip2_HOWTO
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chip2_filter_mef2.py
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chip2_join_mef2.py
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demBarenco1.m
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demBarenco2.m
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demBarencoMap1.m
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demBarencoMap2.m
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demBarencoMap3.m
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demBarencoMap4.m
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demBarencoMap5.m
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demBarencoMap6.m
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demBarencoMap7.m
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demBarencoMap8.m
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demBarencoRank.m
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demBarencoVariational1.m
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demBasisSample.m
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demEcoliMap1.m
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demGpdisimMef2.m
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demToyProblem1.m
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demToyProblem2.m
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demToyProblem3.m
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demToyProblem5.m
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demToyProblem7.m
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demToyProblem8.m
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demToyProblemModified.m
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diagnostics.dat
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distfit.m
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drosFindSIMTargets.m
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drosFindTargets.m
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drosGetGeneinds.m
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drosPlotExpPcts.m
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drosTargets.m
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expvarMeanCreate.m
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expvarMeanExpandParam.m
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expvarMeanExtractParam.m
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expvarMeanOut.m
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gpdisimCreate.m
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gpdisimExpandParam.m
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gpdisimExtractParam.m
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gpdisimGetDrosData.m
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gpdisimGradient.m
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gpdisimLogLikeGradients.m
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gpdisimLogLikelihood.m
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gpdisimObjective.m
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gpdisimOptimise.m
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gpdisimSampleTest.m
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gpnddisimCreate.m
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gpnddisimDisplay.m
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gpnddisimExpandParam.m
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gpnddisimExpandParamTransformSettings.m
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gpnddisimExtractParam.m
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gpnddisimExtractParamTransformSettings.m
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gpnddisimGradient.m
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gpnddisimLogLikeGradients.m
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gpnddisimLogLikelihood.m
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gpnddisimObjective.m
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gpnddisimOptimise.m
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gpnddisimOptions.m
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gpnddisimPredict.m
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gpnddisimPredictRNAConditional.m
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gpnddisimPredictRNAOnly.m
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gpnddisimSampleHMC.m
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gpnddisimSamplePredictions.m
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gpnddisimUpdateKernels.m
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gpsim.txt
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gpsimAddCandidate.m
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gpsimArtificialGenes.m
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gpsimArtificialProtein.m
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gpsimCandidateCovGrads.m
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gpsimCandidateExpandParam.m
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gpsimCandidateExtractParam.m
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gpsimCandidateLogLikeGradients.m
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gpsimCandidateLogLikelihood.m
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gpsimCandidateObjective.m
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gpsimCandidateOptimise.m
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gpsimCandidateUpdateKernels.m
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gpsimCreate.m
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gpsimDisplay.m
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gpsimExpandParam.m
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gpsimExtractParam.m
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gpsimGradient.m
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gpsimLoadBarencoData.m
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gpsimLoadBarencoMASData.m
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gpsimLoadBarencoPUMAData.m
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gpsimLoadBarencoTestData.m
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gpsimLoadEcoliData.m
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gpsimLoadEcoliFullData.m
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gpsimLogLikeGradients.m
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gpsimLogLikelihood.m
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gpsimMapBarencoResults.m
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gpsimMapCreate.m
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gpsimMapEcoliResults.m
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gpsimMapExpandParam.m
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gpsimMapExtractParam.m
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gpsimMapFunctionalExpandParam.m
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gpsimMapFunctionalExtractParam.m
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gpsimMapFunctionalLikeGrad2.m
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gpsimMapFunctionalLogLikeGradients.m
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gpsimMapFunctionalLogLikeHessian.m
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gpsimMapFunctionalLogLikelihood.m
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gpsimMapFunctionalUpdateW.m
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gpsimMapFunctionalWGradient.m
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gpsimMapGradFuncWrapper.m
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gpsimMapGradients.m
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gpsimMapInitParam.m
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gpsimMapLikeGradientImplicit.m
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gpsimMapLogLikeGradients.m
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gpsimMapLogLikelihood.m
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gpsimMapMarginalLikeliGradient.m
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gpsimMapObjective.m
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gpsimMapOptions.m
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gpsimMapTest.m
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gpsimMapUpdateF.m
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gpsimMapUpdateG.m
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gpsimMapUpdateKernels.m
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gpsimMapUpdatePosteriorCovariance.m
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gpsimMapUpdateYpred.m
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gpsimMapUpdateYpredVar.m
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gpsimMapWGradient.m
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gpsimModelFunctions.m
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gpsimObjective.m
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gpsimOptimise.m
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gpsimOptions.m
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gpsimSampleHMC.m
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gpsimSampleTest.m
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gpsimTest.m
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gpsimToolboxes.m
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gpsimUpdateKernels.m
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gpsimXGradient.m
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ignorefiles.txt
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myhmc_bounded.m
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readme.txt
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