|
..
|
|
Media
|
|
expected_outputs
|
|
inputs
|
|
01.00-How-to-Get-Started.ipynb
|
|
01.01-PyRosetta-Google-Drive-Setup.ipynb
|
|
01.02-PyRosetta-Google-Drive-Usage-Example.ipynb
|
|
02.00-Introduction-to-PyRosetta.ipynb
|
|
02.01-Pose-Basics.ipynb
|
|
02.02-Working-with-Pose-Residues.ipynb
|
|
02.03-Accessing-PyRosetta-Documentation.ipynb
|
|
02.04-Getting-Spatial-Features-from-Pose.ipynb
|
|
02.05-Protein-Geometry.ipynb
|
|
02.06-Visualization-and-PyMOL-Mover.ipynb
|
|
03.00-Rosetta-Energy-Score-Functions.ipynb
|
|
03.01-Score-Function-Basics.ipynb
|
|
03.02-Analyzing-energy-between-residues.ipynb
|
|
03.03-Energies-and-the-PyMOLMover.ipynb
|
|
04.00-Introduction-to-Folding.ipynb
|
|
04.01-Basic-Folding-Algorithm.ipynb
|
|
04.02-Low-Res-Scoring-and-Fragments.ipynb
|
|
05.00-Structure-Refinement.ipynb
|
|
05.01-High-Res-Movers.ipynb
|
|
05.02-Refinement-Protocol.ipynb
|
|
06.00-Introduction-to-Packing-and-Design.ipynb
|
|
06.01-Side-Chain-Conformations-and-Dunbrack-Energies.ipynb
|
|
06.05-HBNet-Before-Design.ipynb
|
|
06.06-Introduction-to-Parametric-backbone-design.ipynb
|
|
06.xx-Design-original.ipynb
|
|
06.xx-packing-original.ipynb
|
|
07.00-Docking.ipynb
|
|
07.01-Fast-Fourier-Transform-Based-Docking-via-ZDOCK.ipynb
|
|
07.02-Docking-Moves-in-Rosetta.ipynb
|
|
10.00-Working-With-Antibodies.ipynb
|
|
_index.ipynb
|
|
_toc.ipynb
|
|
nbgrader_config.py
|