# Install dependencies
install.packages("remotes")
Updating HTML index of packages in '.Library' Making 'packages.html' ... done
# Install DATRAS package
install.packages("icesDatras")
install.packages('DATRAS',repos='http://www.rforge.net/',type='source')
Updating HTML index of packages in '.Library' Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done
# Install repository
remotes::install_github("NatoyaJourdain/IBTSNorthSea")
Skipping install of 'IBTSindices' from a github remote, the SHA1 (a655be44) has not changed since last install. Use `force = TRUE` to force installation
# Below are taken from https://github.com/NatoyaJourdain/IBTSNorthSea/blob/master/script/produceResults.R
#Read data and set some parameters----------
library(IBTSindices)
year =2018
quarter = 1
species = "Gadus morhua";
dat = readIBTSData(survey = "NS-IBTS", year = year, quarter = quarter,species = species)
n=2 #Number bootstrap samples
#-------------------------------------
#Calculates CPUEs on age-level in the North Sea---------
bootstrapProcedure = "datras"
ALKprocedure = "datras"
set.seed(1455)
mCPUEDatras = CPUEnorthSea(species = species, year = year, quarter = quarter,dat = dat,
bootstrapProcedure = bootstrapProcedure, B = n, ALKprocedure = ALKprocedure)
bootstrapProcedure = "stratifiedHLandCA"
ALKprocedure = "datras"
set.seed(1455)
mCPUEStratifiedHL = CPUEnorthSea(species = species, year = year, quarter = quarter,dat = dat,
bootstrapProcedure = bootstrapProcedure, B = n, ALKprocedure = ALKprocedure)
bootstrapProcedure = "stratifiedHLandCA"
ALKprocedure = "haulBased"
set.seed(1455)
mCPUEHaulBasedStratifiedHLandCA = CPUEnorthSea(species = species, year = year, quarter = quarter,dat = dat,
bootstrapProcedure = bootstrapProcedure, B = n, ALKprocedure = ALKprocedure)
#-------------------------------------
Loading required package: DATRAS Loading required package: rgeos Loading required package: sp rgeos version: 0.5-5, (SVN revision 640) GEOS runtime version: 3.8.1-CAPI-1.13.3 Linking to sp version: 1.4-2 Polygon checking: TRUE Loading required package: geosphere Loading required package: TMB Loading required package: Matrix Loading required package: dplyr Attaching package: ‘dplyr’ The following objects are masked from ‘package:rgeos’: intersect, setdiff, union The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: sparseMVN Loading required package: icesDatras Loading required package: rgdal rgdal: version: 1.5-19, (SVN revision 1092) Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 3.1.4, released 2020/10/20 Path to GDAL shared files: /opt/conda/share/gdal GDAL binary built with GEOS: TRUE Loaded PROJ runtime: Rel. 7.1.1, September 1st, 2020, [PJ_VERSION: 711] Path to PROJ shared files: /home/jovyan/.local/share/proj:/opt/conda/share/proj:/opt/conda/share/proj PROJ CDN enabled: FALSE Linking to sp version:1.4-5 To mute warnings of possible GDAL/OSR exportToProj4() degradation, use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal. Loading required package: foreach Loading required package: doParallel Loading required package: iterators Loading required package: parallel Loading required package: MASS Attaching package: ‘MASS’ The following object is masked from ‘package:dplyr’: select
[1] "Done with calculating point estimate:" [1] 0.0000000 0.8567200 6.6261773 1.8109118 1.7024635 0.8075274 1.0224920 [1] "Done with simulation 1:" [1] 0.0000000 0.9016533 6.2590840 1.5786175 2.0525833 0.8466827 1.3925291 [1] "Done with simulation 2:" [1] 0.0000000 0.8158190 6.5500063 1.5257952 1.0740257 0.6308321 0.4377566 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8567200 6.6261773 1.8109118 1.7024635 0.8075274 1.0224920 [1] "Done with simulation 1:" [1] 0.0000000 0.9436176 6.0157284 1.4017262 1.3077619 0.6441424 0.7988485 [1] "Done with simulation 2:" [1] 0.0000000 0.8237701 7.9602152 1.7534390 1.5609111 0.7448887 0.9748620 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8672845 6.6675180 1.6834338 1.7244884 0.7851119 1.0984553 [1] "Done with simulation 1:" [1] 0.0000000 0.9555424 5.8896556 1.5040832 1.3250389 0.6163191 0.8211858 [1] "Done with simulation 2:" [1] 0.0000000 0.8246861 8.0797194 1.5571754 1.6119566 0.7292760 1.0152726
#Resample data with different length groups-----------------
samplesWithinEachIntervall = 5
ALKprocedure = "haulBased"
yearSpan = 2015:2018
quarters = c(1,3)
sampleOtolithSpan = 1:5
for(quarter in quarters){
for(year in yearSpan){
set.seed(1455)
dat = readIBTSData(survey = "NS-IBTS", year = year, quarter = quarter,species = species)
for (dl in sampleOtolithSpan){
lengthDivision = c(seq(0,max(round(dat$ca_hh$LngtCm),round(dat$hl_hh$LngtCm)) + 2*dl,by = dl))
removeOtoliths = investigateRemoval(species = species, year = year, quarter = quarter,dat = dat,B = n,
lengthDivision = lengthDivision,
samplesWithinEachIntervall = samplesWithinEachIntervall)
#Save work
#saveRDS(removeOtoliths, file = paste("results/resamplingOtoliths/RemovalCodDl",dl,"year",year,"Q",quarter,"n", n,ALKprocedure,samplesWithinEachIntervall, sep= ""))
print(removeOtoliths)
}
}
}
[1] "Done with calculating point estimate:" [1] 0.0000000 3.2876514 10.4973185 5.1418046 1.8959609 0.6686003 0.5647149 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 38 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 16 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 24 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 40 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 49 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 40 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 42 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 52 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 44 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 50 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 51 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 53 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 60 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.8059283 10.4115937 4.2258219 1.4637997 0.5636736 0.5111595 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 38 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 49 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 16 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 24 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 16 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 24 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:683 in year 2015 had more age observations of length 40 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2335 in year 2015 had more age observations of length 49 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 40 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 42 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 52 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 40 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 42 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 52 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 40 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 48 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 54 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 56 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 57 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 4.0274654 9.0548123 5.5427029 2.0785091 0.8110176 0.7584204 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2876514 0 0 0 0 0 0 0 3 10.4973185 0 0 0 0 0 0 0 4 5.1418046 0 0 0 0 0 0 0 5 1.8959609 0 0 0 0 0 0 0 6 0.6686003 0 0 0 0 0 0 0 7 0.5647149 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 2 3.9166968 3.9166968 3.8114667 4.0219270 3.8059283 3.8059283 0.1566504 3 9.7332030 9.7332030 9.0887319 10.3776742 10.4115937 10.4115937 0.9593893 4 4.8842624 4.8842624 4.2587439 5.5097809 4.2587439 5.5097809 0.9311755 5 1.7711544 1.7711544 1.4791674 2.0631413 1.4791674 2.0631413 0.4346652 6 0.6873456 0.6873456 0.5698572 0.8048340 0.5698572 0.8048340 0.1748986 7 0.6347900 0.6347900 0.5173411 0.7522389 0.5173411 0.7522389 0.1748398 cv 1 NaN 2 0.03999554 3 0.09856872 4 0.19064814 5 0.24541350 6 0.25445510 7 0.27542943 attr(,"nOtolithsRemoved") [1] 47 85 attr(,"nOtolithsTotal") [1] 2663 2963 attr(,"nWithDatras") [1] 17 22 attr(,"nWithoutDatras") [1] 3758 4280 attr(,"nFoundWithin") [1] 3383 3787 attr(,"nNotFoundWithin") [1] 391 515 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2852638 10.5265519 5.1213689 1.8919359 0.6662936 0.5646363 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 25 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 25 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:683 in year 2015 had more age observations of length 21 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2335 in year 2015 had more age observations of length 25 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 21 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 29 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.9556337 12.8265825 4.7323435 1.8786640 0.6738375 0.7173970 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 25 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2335 in year 2015 had more age observations of length 25 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 21 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 27 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 21 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 27 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 26 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 27 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 31 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 26 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 27 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 31 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 4.4052870 10.3675511 5.5305830 1.7901477 0.5505983 0.3755272 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2852638 0 0 0 0 0 0 0 3 10.5265519 0 0 0 0 0 0 0 4 5.1213689 0 0 0 0 0 0 0 5 1.8919359 0 0 0 0 0 0 0 6 0.6662936 0 0 0 0 0 0 0 7 0.5646363 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 4.1804603 4.1804603 3.9668750 4.3940456 3.9556337 3.9556337 0.31795288 3 11.5970668 11.5970668 10.4290269 12.7651067 10.4290269 12.7651067 1.73879779 4 5.1314632 5.1314632 4.7522995 5.5106270 4.7522995 5.5106270 0.56444055 5 1.8344059 1.8344059 1.7923606 1.8764511 1.8786640 1.8786640 0.06259048 6 0.6122179 0.6122179 0.5536792 0.6707565 0.5536792 0.6707565 0.08714327 7 0.5464621 0.5464621 0.3840739 0.7088503 0.3840739 0.7088503 0.24173849 cv 1 NaN 2 0.07605691 3 0.14993427 4 0.10999602 5 0.03412030 6 0.14234030 7 0.44237010 attr(,"nOtolithsRemoved") [1] 198 132 attr(,"nOtolithsTotal") [1] 2897 2921 attr(,"nWithDatras") [1] 23 12 attr(,"nWithoutDatras") [1] 3899 4167 attr(,"nFoundWithin") [1] 3631 3832 attr(,"nNotFoundWithin") [1] 290 347 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2848168 10.5345992 5.1449991 1.8640317 0.6639583 0.5636454 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 17 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 17 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:683 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 18 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 20 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.9138030 10.2096703 5.2252393 1.9246601 0.6733325 0.3884691 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:683 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 18 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 19 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7433702 11.5433049 5.3624854 2.0591832 0.8696137 0.7576765 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2848168 0 0 0 0 0 0 0 3 10.5345992 0 0 0 0 0 0 0 4 5.1449991 0 0 0 0 0 0 0 5 1.8640317 0 0 0 0 0 0 0 6 0.6639583 0 0 0 0 0 0 0 7 0.5636454 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 3.8285866 3.8285866 3.7476310 3.9095421 3.7433702 3.7433702 0.12051414 3 10.8764876 10.8764876 10.2430112 11.5099640 10.2430112 11.5099640 0.94302204 4 5.2938623 5.2938623 5.2286704 5.3590542 5.2252393 5.2252393 0.09704768 5 1.9919217 1.9919217 1.9280232 2.0558202 1.9246601 1.9246601 0.09512222 6 0.7714731 0.7714731 0.6782395 0.8647067 0.6733325 0.6733325 0.13879177 7 0.5730728 0.5730728 0.3976993 0.7484463 0.3976993 0.7484463 0.26106903 cv 1 NaN 2 0.03147745 3 0.08670281 4 0.01833211 5 0.04775399 6 0.17990488 7 0.45555997 attr(,"nOtolithsRemoved") [1] 338 236 attr(,"nOtolithsTotal") [1] 2993 2954 attr(,"nWithDatras") [1] 15 14 attr(,"nWithoutDatras") [1] 4081 4486 attr(,"nFoundWithin") [1] 3887 4267 attr(,"nNotFoundWithin") [1] 209 233 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2830989 10.5445798 5.1064125 1.8919197 0.6664859 0.5635536 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 11 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 4.3015772 10.1687820 5.1297545 1.9917712 0.6482155 0.5251551 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.0935952 8.4578641 5.0917447 1.9595286 0.5917686 0.6212292 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2830989 0 0 0 0 0 0 0 3 10.5445798 0 0 0 0 0 0 0 4 5.1064125 0 0 0 0 0 0 0 5 1.8919197 0 0 0 0 0 0 0 6 0.6664859 0 0 0 0 0 0 0 7 0.5635536 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 3.6975862 3.6975862 3.1237947 4.2713777 3.1237947 4.2713777 0.85417231 3 9.3133230 9.3133230 8.5006370 10.1260091 10.1687820 10.1687820 1.20980169 4 5.1107496 5.1107496 5.0926949 5.1288043 5.0926949 5.1288043 0.02687700 5 1.9756499 1.9756499 1.9603346 1.9909651 1.9595286 1.9595286 0.02279897 6 0.6199921 0.6199921 0.5931797 0.6468044 0.6482155 0.6482155 0.03991403 7 0.5731921 0.5731921 0.5275570 0.6188273 0.5275570 0.6188273 0.06793462 cv 1 NaN 2 0.231008085 3 0.129900110 4 0.005258915 5 0.011539986 6 0.064378295 7 0.118519797 attr(,"nOtolithsRemoved") [1] 463 310 attr(,"nOtolithsTotal") [1] 2914 2673 attr(,"nWithDatras") [1] 16 14 attr(,"nWithoutDatras") [1] 4081 3663 attr(,"nFoundWithin") [1] 3837 3417 attr(,"nNotFoundWithin") [1] 260 260 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2840880 10.5161319 5.0990000 1.9140373 0.6756445 0.5671488 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 13 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 4.0655583 9.7206061 5.1034452 1.7528720 0.6519096 0.5444788 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2333 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2336 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 13 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 4.2913599 9.9755463 5.4173472 2.2236412 0.6989402 0.6666547 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2840880 0 0 0 0 0 0 0 3 10.5161319 0 0 0 0 0 0 0 4 5.0990000 0 0 0 0 0 0 0 5 1.9140373 0 0 0 0 0 0 0 6 0.6756445 0 0 0 0 0 0 0 7 0.5671488 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 4.1784591 4.1784591 4.0712033 4.2857148 4.0655583 4.0655583 0.15966584 3 9.8480762 9.8480762 9.7269796 9.9691728 9.9755463 9.9755463 0.18026996 4 5.2603962 5.2603962 5.1112928 5.4094997 5.1034452 5.1034452 0.22196225 5 1.9882566 1.9882566 1.7646412 2.2118720 1.7646412 2.2118720 0.33288408 6 0.6754249 0.6754249 0.6530853 0.6977644 0.6530853 0.6977644 0.03325565 7 0.6055667 0.6055667 0.5475332 0.6636003 0.5475332 0.6636003 0.08639138 cv 1 NaN 2 0.03821166 3 0.01830509 4 0.04219497 5 0.16742511 6 0.04923664 7 0.14266203 attr(,"nOtolithsRemoved") [1] 621 495 attr(,"nOtolithsTotal") [1] 2966 2986 attr(,"nWithDatras") [1] 16 13 attr(,"nWithoutDatras") [1] 3905 4274 attr(,"nFoundWithin") [1] 3805 4052 attr(,"nNotFoundWithin") [1] 116 235 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4304025 4.1035603 6.0957399 2.6944328 0.9573397 0.6607216 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 53 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 57 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 63 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 24 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:925 in year 2016 had more age observations of length 64 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.4016123 2.6129642 5.6872931 2.2743833 0.9183646 0.6534902 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 53 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 57 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 63 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3117440 3.1913558 5.6321530 2.3825909 1.0067131 0.6381037 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4304025 0 0 0 0 0 0 0 3 4.1035603 0 0 0 0 0 0 0 4 6.0957399 0 0 0 0 0 0 0 5 2.6944328 0 0 0 0 0 0 0 6 0.9573397 0 0 0 0 0 0 0 7 0.6607216 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.3566781 1.3566781 1.3139907 1.3993656 1.4016123 1.4016123 0.06354648 3 2.9021600 2.9021600 2.6274240 3.1768960 3.1913558 3.1913558 0.40898464 4 5.6597230 5.6597230 5.6335315 5.6859146 5.6872931 5.6872931 0.03898993 5 2.3284871 2.3284871 2.2770885 2.3798857 2.3825909 2.3825909 0.07651436 6 0.9625388 0.9625388 0.9205733 1.0045044 0.9205733 1.0045044 0.06247185 7 0.6457970 0.6457970 0.6384884 0.6531055 0.6534902 0.6534902 0.01087991 cv 1 NaN 2 0.046839758 3 0.140924223 4 0.006889017 5 0.032860119 6 0.064903202 7 0.016847266 attr(,"nOtolithsRemoved") [1] 6 4 attr(,"nOtolithsTotal") [1] 1831 1877 attr(,"nWithDatras") [1] 21 12 attr(,"nWithoutDatras") [1] 2368 2601 attr(,"nFoundWithin") [1] 2264 2443 attr(,"nNotFoundWithin") [1] 125 170 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4369276 4.0901130 6.1077198 2.7083399 0.9370825 0.6620139 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 33 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3935520 5.1276468 5.2232965 2.8072137 1.0174665 0.6272475 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 29 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 32 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 33 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.6685781 4.4354779 6.0146564 2.6826619 0.9443713 0.7711266 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4369276 0 0 0 0 0 0 0 3 4.0901130 0 0 0 0 0 0 0 4 6.1077198 0 0 0 0 0 0 0 5 2.7083399 0 0 0 0 0 0 0 6 0.9370825 0 0 0 0 0 0 0 7 0.6620139 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.5310650 1.5310650 1.4004276 1.6617024 1.4004276 1.6617024 0.19447283 3 4.7815624 4.7815624 4.4527822 5.1103426 4.4354779 4.4354779 0.48943732 4 5.6189764 5.6189764 5.2430805 5.9948724 6.0146564 6.0146564 0.55957599 5 2.7449378 2.7449378 2.6857756 2.8040999 2.6857756 2.8040999 0.08807146 6 0.9809189 0.9809189 0.9461986 1.0156391 0.9443713 0.9443713 0.05168611 7 0.6991870 0.6991870 0.6308444 0.7675296 0.6308444 0.7675296 0.10173791 cv 1 NaN 2 0.12701801 3 0.10235929 4 0.09958682 5 0.03208505 6 0.05269153 7 0.14550886 attr(,"nOtolithsRemoved") [1] 10 21 attr(,"nOtolithsTotal") [1] 2005 2166 attr(,"nWithDatras") [1] 13 6 attr(,"nWithoutDatras") [1] 3585 3341 attr(,"nFoundWithin") [1] 3434 3255 attr(,"nNotFoundWithin") [1] 164 92 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4330125 4.0743991 6.0994784 2.7266505 0.9554823 0.6531739 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 20 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 9 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.7471088 3.8869950 6.0873808 2.6344949 0.8673025 0.5937781 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 9 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.4131508 3.2982740 5.5687754 2.8395113 0.7912009 0.6222540 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4330125 0 0 0 0 0 0 0 3 4.0743991 0 0 0 0 0 0 0 4 6.0994784 0 0 0 0 0 0 0 5 2.7266505 0 0 0 0 0 0 0 6 0.9554823 0 0 0 0 0 0 0 7 0.6531739 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.5801298 1.5801298 1.4214998 1.7387598 1.4214998 1.7387598 0.23614394 3 3.5926345 3.5926345 3.3129921 3.8722769 3.8869950 3.8869950 0.41628855 4 5.8280781 5.8280781 5.5817405 6.0744157 6.0873808 6.0873808 0.36670945 5 2.7370031 2.7370031 2.6396203 2.8343859 2.6396203 2.8343859 0.14496847 6 0.8292517 0.8292517 0.7931035 0.8653999 0.8673025 0.8673025 0.05381191 7 0.6080160 0.6080160 0.5944900 0.6215421 0.6222540 0.6222540 0.02013550 cv 1 NaN 2 0.14944591 3 0.11587278 4 0.06292116 5 0.05296613 6 0.06489214 7 0.03311672 attr(,"nOtolithsRemoved") [1] 72 42 attr(,"nOtolithsTotal") [1] 2028 1979 attr(,"nWithDatras") [1] 21 22 attr(,"nWithoutDatras") [1] 3048 2813 attr(,"nFoundWithin") [1] 2956 2697 attr(,"nNotFoundWithin") [1] 113 138 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4369276 4.0553840 6.1214471 2.7266496 0.9377083 0.6640801 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 17 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 17 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.4075446 4.3611662 5.8327636 2.9305044 1.0713945 0.7228492 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 17 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 17 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 17 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.2549710 4.5741817 5.5207513 2.5237802 1.0020305 0.5104223 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4369276 0 0 0 0 0 0 0 3 4.0553840 0 0 0 0 0 0 0 4 6.1214471 0 0 0 0 0 0 0 5 2.7266496 0 0 0 0 0 0 0 6 0.9377083 0 0 0 0 0 0 0 7 0.6640801 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.000000 0.0000000 0.000000 0.0000000 0.0000000 2 1.3312578 1.3312578 1.258785 1.4037303 1.407545 1.4075446 0.1078859 3 4.4676739 4.4676739 4.366492 4.5688563 4.361166 4.3611662 0.1506247 4 5.6767575 5.6767575 5.528552 5.8249633 5.832764 5.8327636 0.2206260 5 2.7271423 2.7271423 2.533948 2.9203363 2.533948 2.9203363 0.2875974 6 1.0367125 1.0367125 1.003765 1.0696604 1.002030 1.0020305 0.0490478 7 0.6166358 0.6166358 0.515733 0.7175385 0.515733 0.7175385 0.1502085 cv 1 NaN 2 0.08104054 3 0.03371435 4 0.03886479 5 0.10545744 6 0.04731090 7 0.24359359 attr(,"nOtolithsRemoved") [1] 133 129 attr(,"nOtolithsTotal") [1] 2144 2060 attr(,"nWithDatras") [1] 11 6 attr(,"nWithoutDatras") [1] 3235 3367 attr(,"nFoundWithin") [1] 3189 3312 attr(,"nNotFoundWithin") [1] 57 61 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4347526 4.0663071 6.1109569 2.7272565 0.9338732 0.6690504 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3383611 4.3381937 5.8649807 2.4355881 0.9379640 0.6459094 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.2918991 4.2021583 5.3243398 2.9464256 0.9883156 0.7595647 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4347526 0 0 0 0 0 0 0 3 4.0663071 0 0 0 0 0 0 0 4 6.1109569 0 0 0 0 0 0 0 5 2.7272565 0 0 0 0 0 0 0 6 0.9338732 0 0 0 0 0 0 0 7 0.6690504 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.3151301 1.3151301 1.2930606 1.3371995 1.3383611 1.3383611 0.03285362 3 4.2701760 4.2701760 4.2055592 4.3347928 4.2021583 4.2021583 0.09619157 4 5.5946603 5.5946603 5.3378558 5.8514647 5.8649807 5.8649807 0.38229087 5 2.6910068 2.6910068 2.4483590 2.9336546 2.4483590 2.9336546 0.36121665 6 0.9631398 0.9631398 0.9392228 0.9870568 0.9379640 0.9379640 0.03560398 7 0.7027370 0.7027370 0.6487507 0.7567233 0.6487507 0.7567233 0.08036646 cv 1 NaN 2 0.02498127 3 0.02252637 4 0.06833138 5 0.13423104 6 0.03696657 7 0.11436207 attr(,"nOtolithsRemoved") [1] 172 103 attr(,"nOtolithsTotal") [1] 2040 1990 attr(,"nWithDatras") [1] 13 14 attr(,"nWithoutDatras") [1] 3212 3130 attr(,"nFoundWithin") [1] 3177 3061 attr(,"nNotFoundWithin") [1] 48 83 [1] "Done with calculating point estimate:" [1] 0.0000000 8.8386229 2.3395813 3.2010149 3.1357428 1.4501800 0.8519896 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:128:4176 in year 2017 had more age observations of length 69 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:128:4177 in year 2017 had more age observations of length 69 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 67 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 23 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:41E727:279 in year 2017 had more age observations of length 24 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:41E727:2710 in year 2017 had more age observations of length 24 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 26 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 22 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.366371 2.326520 3.120843 2.768920 1.395425 1.224152 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 43 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:128:4177 in year 2017 had more age observations of length 69 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 67 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 19 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 26 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 22 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 9.901247 2.456135 4.099074 3.868404 1.833115 1.725584 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 8.8386229 0 0 0 0 0 0 0 3 2.3395813 0 0 0 0 0 0 0 4 3.2010149 0 0 0 0 0 0 0 5 3.1357428 0 0 0 0 0 0 0 6 1.4501800 0 0 0 0 0 0 0 7 0.8519896 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd cv 1 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.00000000 NaN 2 9.133809 9.133809 8.404742 9.862875 8.404742 9.862875 1.08532132 0.11882462 3 2.391328 2.391328 2.329760 2.452895 2.329760 2.452895 0.09165165 0.03832668 4 3.609958 3.609958 3.145298 4.074618 3.145298 4.074618 0.69171373 0.19161267 5 3.318662 3.318662 2.796407 3.840917 2.796407 3.840917 0.77745269 0.23426691 6 1.614270 1.614270 1.406367 1.822173 1.406367 1.822173 0.30949374 0.19172362 7 1.474868 1.474868 1.236688 1.713048 1.224152 1.224152 0.35456533 0.24040479 attr(,"nOtolithsRemoved") [1] 18 9 attr(,"nOtolithsTotal") [1] 2546 2655 attr(,"nWithDatras") [1] 19 29 attr(,"nWithoutDatras") [1] 4188 5121 attr(,"nFoundWithin") [1] 4122 5055 attr(,"nNotFoundWithin") [1] 85 95 [1] "Done with calculating point estimate:" [1] 0.0000000 8.8386229 2.3448014 3.1922336 3.1643488 1.4325131 0.8446118 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 34 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 9.2295634 2.2406508 3.7480135 3.9206251 1.5970940 0.8693933 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 34 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 8.8795466 2.3192541 3.1795560 3.0388161 1.5514980 0.4695949 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 8.8386229 0 0 0 0 0 0 0 3 2.3448014 0 0 0 0 0 0 0 4 3.1922336 0 0 0 0 0 0 0 5 3.1643488 0 0 0 0 0 0 0 6 1.4325131 0 0 0 0 0 0 0 7 0.8446118 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 9.0545550 9.0545550 8.8882970 9.2208130 8.8795466 8.8795466 0.24749929 3 2.2799524 2.2799524 2.2426159 2.3172890 2.3192541 2.3192541 0.05558093 4 3.4637847 3.4637847 3.1937674 3.7338021 3.1937674 3.7338021 0.40196017 5 3.4797206 3.4797206 3.0608613 3.8985798 3.0608613 3.8985798 0.62353312 6 1.5742960 1.5742960 1.5526379 1.5959541 1.5514980 1.5514980 0.03224131 7 0.6694941 0.6694941 0.4795898 0.8593983 0.4795898 0.8593983 0.28270015 cv 1 NaN 2 0.02733423 3 0.02437811 4 0.11604652 5 0.17919057 6 0.02047982 7 0.42225937 attr(,"nOtolithsRemoved") [1] 31 47 attr(,"nOtolithsTotal") [1] 2590 2494 attr(,"nWithDatras") [1] 19 26 attr(,"nWithoutDatras") [1] 4271 3974 attr(,"nFoundWithin") [1] 4235 3942 attr(,"nNotFoundWithin") [1] 55 58 [1] "Done with calculating point estimate:" [1] 0.0000000 8.8386229 2.3468063 3.2263314 3.1323438 1.4460747 0.8269525 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 23 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 8 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 8 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 9.4011914 2.0065306 2.7813421 2.5721343 1.4061380 0.4984064 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3121 in year 2017 had more age observations of length 10 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 8.9644305 2.1651280 3.2605642 3.0619733 1.1892460 0.8575978 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 8.8386229 0 0 0 0 0 0 0 3 2.3468063 0 0 0 0 0 0 0 4 3.2263314 0 0 0 0 0 0 0 5 3.1323438 0 0 0 0 0 0 0 6 1.4460747 0 0 0 0 0 0 0 7 0.8269525 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.000000 0.0000000 0.000000 0.0000000 2 9.1828109 9.1828109 8.9753495 9.390272 8.9644305 8.964430 0.3088366 3 2.0858293 2.0858293 2.0104955 2.161163 2.1651280 2.165128 0.1121453 4 3.0209532 3.0209532 2.7933227 3.248584 2.7933227 3.248584 0.3388611 5 2.8170538 2.8170538 2.5843803 3.049727 3.0619733 3.061973 0.3463685 6 1.2976920 1.2976920 1.1946683 1.400716 1.4061380 1.406138 0.1533658 7 0.6780021 0.6780021 0.5073862 0.848618 0.5073862 0.848618 0.2539866 cv 1 NaN 2 0.03363203 3 0.05376533 4 0.11217027 5 0.12295416 6 0.11818352 7 0.37461037 attr(,"nOtolithsRemoved") [1] 95 110 attr(,"nOtolithsTotal") [1] 2426 2499 attr(,"nWithDatras") [1] 24 24 attr(,"nWithoutDatras") [1] 3839 4414 attr(,"nFoundWithin") [1] 3813 4387 attr(,"nNotFoundWithin") [1] 50 52 [1] "Done with calculating point estimate:" [1] 0.0000000 8.8360294 2.3606470 3.2277150 3.1014233 1.4418110 0.8495058 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 18 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 8 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 7 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 10.150745 2.050000 3.908289 3.738714 1.363772 1.344692 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 18 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 7 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3121 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3121 in year 2017 had more age observations of length 8 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:479 in year 2017 had more age observations of length 7 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 8.2521155 2.4140928 3.3833731 2.7338435 1.2030797 0.7937543 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 8.8360294 0 0 0 0 0 0 0 3 2.3606470 0 0 0 0 0 0 0 4 3.2277150 0 0 0 0 0 0 0 5 3.1014233 0 0 0 0 0 0 0 6 1.4418110 0 0 0 0 0 0 0 7 0.8495058 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0.000000 0.0000000 0.000000 0.0000000 0.000000 0.0000000 2 9.201430 9.201430 8.2995813 10.103279 8.2995813 10.103279 1.3425336 3 2.232046 2.232046 2.0591021 2.404991 2.0591021 2.404991 0.2574527 4 3.645831 3.645831 3.3964960 3.895166 3.3833731 3.383373 0.3711713 5 3.236279 3.236279 2.7589653 3.713592 2.7589653 3.713592 0.7105507 6 1.283426 1.283426 1.2070970 1.359754 1.3637716 1.363772 0.1136263 7 1.069223 1.069223 0.8075277 1.330918 0.8075277 1.330918 0.3895716 cv 1 NaN 2 0.14590489 3 0.11534380 4 0.10180707 5 0.21955794 6 0.08853363 7 0.36435018 attr(,"nOtolithsRemoved") [1] 211 159 attr(,"nOtolithsTotal") [1] 2711 2547 attr(,"nWithDatras") [1] 15 32 attr(,"nWithoutDatras") [1] 4999 4294 attr(,"nFoundWithin") [1] 4977 4275 attr(,"nNotFoundWithin") [1] 37 51 [1] "Done with calculating point estimate:" [1] 0.000000 8.839867 2.352294 3.202627 3.138568 1.458154 0.825623 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3121 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.115667 2.316846 3.367627 3.166519 1.535911 1.192120 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:479 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 9.2319776 2.2745652 2.6552089 2.2159427 0.9550418 0.7596983 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0 0 0 0 0 0 0 2 8.839867 0 0 0 0 0 0 0 3 2.352294 0 0 0 0 0 0 0 4 3.202627 0 0 0 0 0 0 0 5 3.138568 0 0 0 0 0 0 0 6 1.458154 0 0 0 0 0 0 0 7 0.825623 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.000000 0.0000000 0.000000 0.00000000 2 8.6738222 8.6738222 8.1435746 9.204070 8.1435746 9.204070 0.78935091 3 2.2957054 2.2957054 2.2756222 2.315789 2.3168456 2.316846 0.02989675 4 3.0114178 3.0114178 2.6730194 3.349816 2.6730194 3.349816 0.50375543 5 2.6912307 2.6912307 2.2397071 3.142754 2.2397071 3.142754 0.67215883 6 1.2454767 1.2454767 0.9695636 1.521390 0.9695636 1.521390 0.41073689 7 0.9759092 0.9759092 0.7705088 1.181310 0.7705088 1.181310 0.30576836 cv 1 NaN 2 0.09100381 3 0.01302291 4 0.16728181 5 0.24975890 6 0.32978289 7 0.31331641 attr(,"nOtolithsRemoved") [1] 145 143 attr(,"nOtolithsTotal") [1] 2563 2413 attr(,"nWithDatras") [1] 28 42 attr(,"nWithoutDatras") [1] 4107 3971 attr(,"nFoundWithin") [1] 4093 3950 attr(,"nNotFoundWithin") [1] 42 62 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8672845 6.6675180 1.6834338 1.7244884 0.7851119 1.0984553 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.0000000 0.9555424 5.8896556 1.5040832 1.3250389 0.6163191 0.8211858 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.0000000 0.8246861 8.0797194 1.5571754 1.6119566 0.7292760 1.0152726 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 0.8672845 0 0 0 0 0 0 0 3 6.6675180 0 0 0 0 0 0 0 4 1.6834338 0 0 0 0 0 0 0 5 1.7244884 0 0 0 0 0 0 0 6 0.7851119 0 0 0 0 0 0 0 7 1.0984553 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.000000 0.0000000 0.000000 0.00000000 2 0.8901143 0.8901143 0.8279575 0.952271 0.8279575 0.952271 0.09252940 3 6.9846875 6.9846875 5.9444072 8.024968 5.9444072 8.024968 1.54860897 4 1.5306293 1.5306293 1.5054105 1.555848 1.5571754 1.557175 0.03754188 5 1.4684977 1.4684977 1.3322118 1.604784 1.6119566 1.611957 0.20288143 6 0.6727975 0.6727975 0.6191430 0.726452 0.7292760 0.729276 0.07987254 7 0.9182292 0.9182292 0.8260379 1.010420 1.0152726 1.015273 0.13724010 cv 1 NaN 2 0.10395227 3 0.22171485 4 0.02452709 5 0.13815576 6 0.11871705 7 0.14946171 attr(,"nOtolithsRemoved") [1] 0 0 attr(,"nOtolithsTotal") [1] 1496 1557 attr(,"nWithDatras") [1] 20 20 attr(,"nWithoutDatras") [1] 1856 2710 attr(,"nFoundWithin") [1] 1847 2694 attr(,"nNotFoundWithin") [1] 29 35 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8693123 6.6600853 1.6914398 1.7348926 0.7758225 1.0947395 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.0000000 0.6186068 6.9664679 1.7363478 1.5342191 0.7275739 0.9213125 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.000000 1.052738 7.621719 1.600267 1.632095 0.799973 1.032774 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 0.8693123 0 0 0 0 0 0 0 3 6.6600853 0 0 0 0 0 0 0 4 1.6914398 0 0 0 0 0 0 0 5 1.7348926 0 0 0 0 0 0 0 6 0.7758225 0 0 0 0 0 0 0 7 1.0947395 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.000000 0.0000000 0.000000 0.00000000 2 0.8356724 0.8356724 0.6294600 1.041885 0.6294600 1.041885 0.30697717 3 7.2940936 7.2940936 6.9828492 7.605338 6.9664679 6.966468 0.46333275 4 1.6683072 1.6683072 1.6036686 1.732946 1.6036686 1.732946 0.09622396 5 1.5831569 1.5831569 1.5366660 1.629648 1.6320947 1.632095 0.06920847 6 0.7637735 0.7637735 0.7293839 0.798163 0.7293839 0.798163 0.05119385 7 0.9770435 0.9770435 0.9240990 1.029988 1.0327745 1.032774 0.07881552 cv 1 NaN 2 0.36734152 3 0.06352163 4 0.05767760 5 0.04371548 6 0.06702754 7 0.08066736 attr(,"nOtolithsRemoved") [1] 16 15 attr(,"nOtolithsTotal") [1] 1582 1562 attr(,"nWithDatras") [1] 24 22 attr(,"nWithoutDatras") [1] 2308 2629 attr(,"nFoundWithin") [1] 2294 2622 attr(,"nNotFoundWithin") [1] 38 29 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8648871 6.6660368 1.6769393 1.7397201 0.7874343 1.0912745 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.0000000 1.0538809 5.8567009 1.4329922 1.6603531 0.7434293 1.1383459 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.0000000 0.7293145 5.7110495 1.5122162 0.9157464 0.5641972 0.3686228 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 0.8648871 0 0 0 0 0 0 0 3 6.6660368 0 0 0 0 0 0 0 4 1.6769393 0 0 0 0 0 0 0 5 1.7397201 0 0 0 0 0 0 0 6 0.7874343 0 0 0 0 0 0 0 7 1.0912745 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 0.8915977 0.8915977 0.7374287 1.0457668 0.7374287 1.0457668 0.22950308 3 5.7838752 5.7838752 5.7146908 5.8530596 5.8567009 5.8567009 0.10299106 4 1.4726042 1.4726042 1.4349728 1.5102356 1.5122162 1.5122162 0.05601986 5 1.2880498 1.2880498 0.9343616 1.6417379 1.6603531 1.6603531 0.52651639 6 0.6538132 0.6538132 0.5686780 0.7389485 0.7434293 0.7434293 0.12673624 7 0.7534843 0.7534843 0.3878659 1.1191028 0.3878659 1.1191028 0.54427642 cv 1 NaN 2 0.25740654 3 0.01780658 4 0.03804135 5 0.40877022 6 0.19384165 7 0.72234605 attr(,"nOtolithsRemoved") [1] 56 18 attr(,"nOtolithsTotal") [1] 1602 1405 attr(,"nWithDatras") [1] 19 21 attr(,"nWithoutDatras") [1] 1971 1701 attr(,"nFoundWithin") [1] 1960 1693 attr(,"nNotFoundWithin") [1] 30 29 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8643994 6.6570520 1.6923136 1.7451907 0.7768359 1.0905004 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.0000000 0.9964738 7.7730870 1.5178439 2.0279422 0.7367214 1.3793874 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.0000000 0.9122449 7.4245584 1.6873124 1.2738500 0.6156989 0.6911878 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 0.8643994 0 0 0 0 0 0 0 3 6.6570520 0 0 0 0 0 0 0 4 1.6923136 0 0 0 0 0 0 0 5 1.7451907 0 0 0 0 0 0 0 6 0.7768359 0 0 0 0 0 0 0 7 1.0905004 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 0.9543593 0.9543593 0.9143506 0.9943681 0.9122449 0.9122449 0.05955886 3 7.5988227 7.5988227 7.4332716 7.7643738 7.4245584 7.4245584 0.24644689 4 1.6025781 1.6025781 1.5220806 1.6830757 1.6873124 1.6873124 0.11983234 5 1.6508961 1.6508961 1.2927023 2.0090899 1.2927023 2.0090899 0.53322371 6 0.6762102 0.6762102 0.6187245 0.7336959 0.7367214 0.7367214 0.08557582 7 1.0352876 1.0352876 0.7083928 1.3621824 0.7083928 1.3621824 0.48663063 cv 1 NaN 2 0.06240717 3 0.03243225 4 0.07477472 5 0.32299048 6 0.12655210 7 0.47004392 attr(,"nOtolithsRemoved") [1] 103 59 attr(,"nOtolithsTotal") [1] 1648 1547 attr(,"nWithDatras") [1] 21 23 attr(,"nWithoutDatras") [1] 2800 2597 attr(,"nFoundWithin") [1] 2794 2594 attr(,"nNotFoundWithin") [1] 27 26 [1] "Done with calculating point estimate:" [1] 0.0000000 0.8614944 6.6642590 1.6871241 1.7354678 0.7901858 1.0877609 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.0000000 0.7152911 6.8312560 1.5531468 1.5215054 0.7818394 1.0380210 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.0000000 1.0039223 9.5400166 1.7279049 1.1837598 0.5567959 0.5754090 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 0.8614944 0 0 0 0 0 0 0 3 6.6642590 0 0 0 0 0 0 0 4 1.6871241 0 0 0 0 0 0 0 5 1.7354678 0 0 0 0 0 0 0 6 0.7901858 0 0 0 0 0 0 0 7 1.0877609 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 2 0.8596067 0.8596067 0.7225069 0.9967065 0.7225069 0.9967065 0.2040931 3 8.1856363 8.1856363 6.8989750 9.4722976 6.8312560 6.8312560 1.9153830 4 1.6405258 1.6405258 1.5575158 1.7235359 1.5575158 1.7235359 0.1235726 5 1.3526326 1.3526326 1.1922034 1.5130617 1.5215054 1.5215054 0.2388222 6 0.6693177 0.6693177 0.5624220 0.7762134 0.7818394 0.7818394 0.1591298 7 0.8067150 0.8067150 0.5869743 1.0264557 1.0380210 1.0380210 0.3271161 cv 1 NaN 2 0.2374261 3 0.2339932 4 0.0753250 5 0.1765610 6 0.2377493 7 0.4054915 attr(,"nOtolithsRemoved") [1] 109 113 attr(,"nOtolithsTotal") [1] 1503 1649 attr(,"nWithDatras") [1] 18 15 attr(,"nWithoutDatras") [1] 2224 3219 attr(,"nFoundWithin") [1] 2220 3218 attr(,"nNotFoundWithin") [1] 22 16 [1] "Done with calculating point estimate:" [1] 0.09892409 4.13557318 8.67513126 3.39500550 1.31938586 0.41627297 0.48964569 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:3:SWE:DANS:GOV:101:466 in year 2015 had more age observations of length 42 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.1031057 3.7224710 8.8459516 2.9344278 1.2890216 0.4985663 0.5453178 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.0599340 2.8031629 6.9581796 2.9821766 1.0466555 0.3751141 0.3672075 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.09892409 0 0 0 0 0 0 0 2 4.13557318 0 0 0 0 0 0 0 3 8.67513126 0 0 0 0 0 0 0 4 3.39500550 0 0 0 0 0 0 0 5 1.31938586 0 0 0 0 0 0 0 6 0.41627297 0 0 0 0 0 0 0 7 0.48964569 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.08151986 0.08151986 0.06101329 0.1020264 0.06101329 0.1020264 0.03052702 2 3.26281693 3.26281693 2.82614559 3.6994883 3.72247098 3.7224710 0.65004898 3 7.90206564 7.90206564 7.00537395 8.7987573 7.00537395 8.7987573 1.33485637 4 2.95830223 2.95830223 2.93562156 2.9809829 2.98217662 2.9821766 0.03376349 5 1.16783854 1.16783854 1.05271464 1.2829624 1.28902159 1.2890216 0.17137872 6 0.43684021 0.43684021 0.37820043 0.4954800 0.37820043 0.4954800 0.08729387 7 0.45626268 0.45626268 0.37166027 0.5408651 0.37166027 0.5408651 0.12594303 cv 1 0.37447343 2 0.19922938 3 0.16892499 4 0.01141313 5 0.14674864 6 0.19983020 7 0.27603184 attr(,"nOtolithsRemoved") [1] 1 0 attr(,"nOtolithsTotal") [1] 2091 1941 attr(,"nWithDatras") [1] 5 2 attr(,"nWithoutDatras") [1] 3359 2661 attr(,"nFoundWithin") [1] 2803 2417 attr(,"nNotFoundWithin") [1] 561 246 [1] "Done with calculating point estimate:" [1] 0.09892409 4.11967937 8.70407793 3.35624488 1.34561472 0.41482293 0.49057463 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:3:SWE:DANS:GOV:101:461 in year 2015 had more age observations of length 22 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:3:SWE:DANS:GOV:101:463 in year 2015 had more age observations of length 22 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.1080428 4.2656815 8.7377726 3.0553585 1.2146375 0.5058911 0.5363087 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:3:SWE:DANS:GOV:101:466 in year 2015 had more age observations of length 22 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.1012100 3.3045676 7.8008733 3.2672910 1.1854596 0.3934149 0.4538473 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.09892409 0 0 0 0 0 0 0 2 4.11967937 0 0 0 0 0 0 0 3 8.70407793 0 0 0 0 0 0 0 4 3.35624488 0 0 0 0 0 0 0 5 1.34561472 0 0 0 0 0 0 0 6 0.41482293 0 0 0 0 0 0 0 7 0.49057463 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.1046264 0.1046264 0.1013809 0.1078720 0.1012100 0.1012100 0.004831512 2 3.7851246 3.7851246 3.3285955 4.2416536 3.3285955 4.2416536 0.679610126 3 8.2693229 8.2693229 7.8242958 8.7143501 7.8242958 8.7143501 0.662487807 4 3.1613248 3.1613248 3.0606568 3.2619927 3.2672910 3.2672910 0.149858896 5 1.2000485 1.2000485 1.1861890 1.2139081 1.2146375 1.2146375 0.020631906 6 0.4496530 0.4496530 0.3962268 0.5030792 0.3962268 0.5030792 0.079532653 7 0.4950780 0.4950780 0.4559088 0.5342472 0.4559088 0.5342472 0.058309048 cv 1 0.04617869 2 0.17954763 3 0.08011391 4 0.04740383 5 0.01719256 6 0.17687562 7 0.11777750 attr(,"nOtolithsRemoved") [1] 8 5 attr(,"nOtolithsTotal") [1] 2042 1958 attr(,"nWithDatras") [1] 4 11 attr(,"nWithoutDatras") [1] 3576 3026 attr(,"nFoundWithin") [1] 2870 2663 attr(,"nNotFoundWithin") [1] 710 374 [1] "Done with calculating point estimate:" [1] 0.09892409 4.12825005 8.70497884 3.37950951 1.30288386 0.42521569 0.49017651 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.08012295 3.82580839 7.07459599 3.49000332 1.15170515 0.47972984 0.49120278 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.06597351 3.79812479 7.50930314 3.13841689 0.86453866 0.30096023 0.35523426 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.09892409 0 0 0 0 0 0 0 2 4.12825005 0 0 0 0 0 0 0 3 8.70497884 0 0 0 0 0 0 0 4 3.37950951 0 0 0 0 0 0 0 5 1.30288386 0 0 0 0 0 0 0 6 0.42521569 0 0 0 0 0 0 0 7 0.49017651 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.07304823 0.07304823 0.06632725 0.07976921 0.08012295 0.08012295 0.01000516 2 3.81196659 3.81196659 3.79881688 3.82511630 3.82580839 3.82580839 0.01957526 3 7.29194957 7.29194957 7.08546367 7.49843546 7.50930314 7.50930314 0.30738438 4 3.31421011 3.31421011 3.14720655 3.48121366 3.14720655 3.48121366 0.24860915 5 1.00812191 1.00812191 0.87171782 1.14452599 1.15170515 1.15170515 0.20305737 6 0.39034504 0.39034504 0.30542947 0.47526060 0.30542947 0.47526060 0.12640920 7 0.42321852 0.42321852 0.35863347 0.48780357 0.35863347 0.48780357 0.09614426 cv 1 0.136966483 2 0.005135214 3 0.042153936 4 0.075013093 5 0.201421446 6 0.323839653 7 0.227174048 attr(,"nOtolithsRemoved") [1] 28 32 attr(,"nOtolithsTotal") [1] 1963 1976 attr(,"nWithDatras") [1] 5 7 attr(,"nWithoutDatras") [1] 2982 3001 attr(,"nFoundWithin") [1] 2713 2774 attr(,"nNotFoundWithin") [1] 274 234 [1] "Done with calculating point estimate:" [1] 0.09892409 4.10397527 8.73160014 3.36591652 1.32365875 0.41489103 0.49097275 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.09241546 3.18300602 7.74566226 2.87456888 1.37206814 0.42420778 0.40291783 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.06561808 2.64274719 8.15204191 3.07794153 1.16791440 0.30505296 0.39326856 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.09892409 0 0 0 0 0 0 0 2 4.10397527 0 0 0 0 0 0 0 3 8.73160014 0 0 0 0 0 0 0 4 3.36591652 0 0 0 0 0 0 0 5 1.32365875 0 0 0 0 0 0 0 6 0.41489103 0 0 0 0 0 0 0 7 0.49097275 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.07901677 0.07901677 0.06628801 0.09174552 0.09241546 0.09241546 0.018948609 2 2.91287661 2.91287661 2.65625366 3.16949955 3.18300602 3.18300602 0.382020680 3 7.94885208 7.94885208 7.75582175 8.14188241 8.15204191 8.15204191 0.287353804 4 2.97625521 2.97625521 2.87965320 3.07285722 3.07794153 3.07794153 0.143806183 5 1.26999127 1.26999127 1.17301825 1.36696430 1.17301825 1.36696430 0.144358495 6 0.36463037 0.36463037 0.30803183 0.42122891 0.30803183 0.42122891 0.084255178 7 0.39809320 0.39809320 0.39350979 0.40267660 0.40291783 0.40291783 0.006823064 cv 1 0.23980491 2 0.13114894 3 0.03615035 4 0.04831783 5 0.11366889 6 0.23107011 7 0.01713936 attr(,"nOtolithsRemoved") [1] 45 63 attr(,"nOtolithsTotal") [1] 1934 1957 attr(,"nWithDatras") [1] 5 5 attr(,"nWithoutDatras") [1] 2878 2851 attr(,"nFoundWithin") [1] 2606 2547 attr(,"nNotFoundWithin") [1] 277 309 [1] "Done with calculating point estimate:" [1] 0.09892409 4.12429124 8.73588161 3.35809852 1.30159276 0.42057571 0.49057463 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 0.05677567 2.63073884 8.41052628 3.12676922 0.95519566 0.36882512 0.36473357 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 0.09045644 2.75057559 8.99419009 3.20534874 1.10866758 0.46058388 0.57469908 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.09892409 0 0 0 0 0 0 0 2 4.12429124 0 0 0 0 0 0 0 3 8.73588161 0 0 0 0 0 0 0 4 3.35809852 0 0 0 0 0 0 0 5 1.30159276 0 0 0 0 0 0 0 6 0.42057571 0 0 0 0 0 0 0 7 0.49057463 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.07361605 0.07361605 0.05761769 0.08961442 0.09045644 0.09045644 0.02381590 2 2.69065721 2.69065721 2.63373476 2.74757967 2.75057559 2.75057559 0.08473738 3 8.70235819 8.70235819 8.42511788 8.97959850 8.42511788 8.97959850 0.41271264 4 3.16605898 3.16605898 3.12873371 3.20338425 3.20534874 3.20534874 0.05556411 5 1.03193162 1.03193162 0.95903246 1.10483078 1.10866758 1.10866758 0.10852103 6 0.41470450 0.41470450 0.37111908 0.45828991 0.37111908 0.45828991 0.06488325 7 0.46971632 0.46971632 0.36998270 0.56944994 0.36998270 0.56944994 0.14846804 cv 1 0.32351502 2 0.03149319 3 0.04742538 4 0.01754993 5 0.10516301 6 0.15645658 7 0.31608022 attr(,"nOtolithsRemoved") [1] 153 88 attr(,"nOtolithsTotal") [1] 1910 1884 attr(,"nWithDatras") [1] 4 5 attr(,"nWithoutDatras") [1] 2618 2660 attr(,"nFoundWithin") [1] 2509 2533 attr(,"nNotFoundWithin") [1] 113 132 [1] "Done with calculating point estimate:" [1] 11.1124564 3.1441509 4.8841457 4.1277367 2.0836169 0.4803543 0.5395745 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 9.8303318 3.1856862 5.1431359 3.9599589 1.9141086 0.3846647 0.4728635 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 10.2989158 3.1419134 5.0327298 4.3061964 2.1970304 0.4889596 0.5117734 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 11.1124564 0 0 0 0 0 0 0 2 3.1441509 0 0 0 0 0 0 0 3 4.8841457 0 0 0 0 0 0 0 4 4.1277367 0 0 0 0 0 0 0 5 2.0836169 0 0 0 0 0 0 0 6 0.4803543 0 0 0 0 0 0 0 7 0.5395745 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 10.0646238 10.0646238 9.8420464 10.2872012 10.2989158 10.2989158 0.33133890 2 3.1637998 3.1637998 3.1430077 3.1845919 3.1430077 3.1845919 0.03095210 3 5.0879329 5.0879329 5.0354900 5.1403757 5.0327298 5.0327298 0.07806889 4 4.1330776 4.1330776 3.9686148 4.2975405 3.9686148 4.2975405 0.24482690 5 2.0555695 2.0555695 1.9211817 2.1899574 1.9211817 2.1899574 0.20005592 6 0.4368122 0.4368122 0.3872721 0.4863523 0.3872721 0.4863523 0.07374764 7 0.4923184 0.4923184 0.4738362 0.5108006 0.5117734 0.5117734 0.02751344 cv 1 0.032921141 2 0.009783203 3 0.015343930 4 0.059235979 5 0.097323843 6 0.168831473 7 0.055885461 attr(,"nOtolithsRemoved") [1] 6 6 attr(,"nOtolithsTotal") [1] 1754 1809 attr(,"nWithDatras") [1] 22 48 attr(,"nWithoutDatras") [1] 4628 4561 attr(,"nFoundWithin") [1] 4402 4331 attr(,"nNotFoundWithin") [1] 248 278 [1] "Done with calculating point estimate:" [1] 11.1124564 3.1374357 4.8811948 4.1304337 2.0946576 0.4711376 0.5447198 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 9.6625837 2.1665542 3.3377267 4.0735347 2.4185893 0.5016527 0.4750737 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 10.6627551 2.6695874 3.1471202 3.7167993 2.1829206 0.4424904 0.4700225 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 11.1124564 0 0 0 0 0 0 0 2 3.1374357 0 0 0 0 0 0 0 3 4.8811948 0 0 0 0 0 0 0 4 4.1304337 0 0 0 0 0 0 0 5 2.0946576 0 0 0 0 0 0 0 6 0.4711376 0 0 0 0 0 0 0 7 0.5447198 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 10.1626694 10.1626694 9.6875880 10.6377508 10.6627551 10.6627551 0.707227944 2 2.4180708 2.4180708 2.1791300 2.6570116 2.6695874 2.6695874 0.355698248 3 3.2424234 3.2424234 3.1518853 3.3329615 3.3377267 3.3377267 0.134779170 4 3.8951670 3.8951670 3.7257177 4.0646163 4.0735347 4.0735347 0.252250022 5 2.3007550 2.3007550 2.1888123 2.4126976 2.1829206 2.1829206 0.166642940 6 0.4720715 0.4720715 0.4439694 0.5001737 0.4439694 0.5001737 0.041834118 7 0.4725481 0.4725481 0.4701488 0.4749475 0.4750737 0.4750737 0.003571757 cv 1 0.069590766 2 0.147100013 3 0.041567418 4 0.064759745 5 0.072429677 6 0.088618172 7 0.007558503 attr(,"nOtolithsRemoved") [1] 62 31 attr(,"nOtolithsTotal") [1] 1858 1805 attr(,"nWithDatras") [1] 45 26 attr(,"nWithoutDatras") [1] 4343 4559 attr(,"nFoundWithin") [1] 4308 4300 attr(,"nNotFoundWithin") [1] 80 285 [1] "Done with calculating point estimate:" [1] 11.1124564 3.1240085 4.8893656 4.1354685 2.0783083 0.4758179 0.5566103 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 12.9011050 3.1517398 2.6213161 3.0601647 2.0867372 0.3940755 0.4062942 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 9.6444724 4.0232374 4.9856669 4.2284862 2.1542082 0.4289732 0.5701418 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 11.1124564 0 0 0 0 0 0 0 2 3.1240085 0 0 0 0 0 0 0 3 4.8893656 0 0 0 0 0 0 0 4 4.1354685 0 0 0 0 0 0 0 5 2.0783083 0 0 0 0 0 0 0 6 0.4758179 0 0 0 0 0 0 0 7 0.5566103 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 11.2727887 11.2727887 9.7258882 12.8196892 9.7258882 12.8196892 2.30278696 2 3.5874886 3.5874886 3.1735272 4.0014499 3.1517398 3.1517398 0.61624184 3 3.8034915 3.8034915 2.6804248 4.9265581 2.6804248 4.9265581 1.67184848 4 3.6443254 3.6443254 3.0893727 4.1992782 3.0893727 4.1992782 0.82612804 5 2.1204727 2.1204727 2.0884240 2.1525214 2.0867372 2.0867372 0.04770918 6 0.4115243 0.4115243 0.3949479 0.4281007 0.4289732 0.4289732 0.02467640 7 0.4882180 0.4882180 0.4103904 0.5660456 0.4103904 0.5660456 0.11585779 cv 1 0.20427837 2 0.17177527 3 0.43955626 4 0.22668888 5 0.02249931 6 0.05996342 7 0.23730750 attr(,"nOtolithsRemoved") [1] 6 94 attr(,"nOtolithsTotal") [1] 1611 1837 attr(,"nWithDatras") [1] 24 65 attr(,"nWithoutDatras") [1] 4818 5069 attr(,"nFoundWithin") [1] 4467 4534 attr(,"nNotFoundWithin") [1] 375 600 [1] "Done with calculating point estimate:" [1] 11.1124564 3.1306115 4.8537702 4.1488739 2.0928057 0.4749728 0.5585451 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 7.7215767 2.7494938 3.5785374 4.4798094 2.0449229 0.4294361 0.5499573 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 9.3867778 2.0159729 2.8957336 3.9230941 2.1034381 0.4382969 0.4674218 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 11.1124564 0 0 0 0 0 0 0 2 3.1306115 0 0 0 0 0 0 0 3 4.8537702 0 0 0 0 0 0 0 4 4.1488739 0 0 0 0 0 0 0 5 2.0928057 0 0 0 0 0 0 0 6 0.4749728 0 0 0 0 0 0 0 7 0.5585451 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 8.5541772 8.5541772 7.7632067 9.3451478 9.3867778 9.3867778 1.177475014 2 2.3827333 2.3827333 2.0343109 2.7311558 2.7494938 2.7494938 0.518677579 3 3.2371355 3.2371355 2.9128037 3.5614673 3.5785374 3.5785374 0.482815235 4 4.2014518 4.2014518 3.9370120 4.4658915 3.9370120 4.4658915 0.393657161 5 2.0741805 2.0741805 2.0463858 2.1019752 2.0463858 2.1019752 0.041376431 6 0.4338665 0.4338665 0.4296576 0.4380754 0.4382969 0.4382969 0.006265522 7 0.5086896 0.5086896 0.4694852 0.5478940 0.5499573 0.5499573 0.058361439 cv 1 0.13764913 2 0.21768176 3 0.14914891 4 0.09369551 5 0.01994833 6 0.01444113 7 0.11472898 attr(,"nOtolithsRemoved") [1] 64 64 attr(,"nOtolithsTotal") [1] 1784 1711 attr(,"nWithDatras") [1] 61 38 attr(,"nWithoutDatras") [1] 3735 4059 attr(,"nFoundWithin") [1] 3463 3945 attr(,"nNotFoundWithin") [1] 333 152 [1] "Done with calculating point estimate:" [1] 11.1124564 3.1245639 4.8087224 4.2046340 2.0862816 0.4760591 0.5593182 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 7.5359936 2.2255044 2.8193181 3.9217006 2.1428570 0.3656803 0.4248717 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 12.3129657 3.5454007 5.1616640 4.3800889 2.3476170 0.4406806 0.4538148 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 11.1124564 0 0 0 0 0 0 0 2 3.1245639 0 0 0 0 0 0 0 3 4.8087224 0 0 0 0 0 0 0 4 4.2046340 0 0 0 0 0 0 0 5 2.0862816 0 0 0 0 0 0 0 6 0.4760591 0 0 0 0 0 0 0 7 0.5593182 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 9.9244796 9.9244796 7.6554179 12.1935414 7.6554179 12.1935414 3.37782936 2 2.8854526 2.8854526 2.2585018 3.5124033 2.2585018 3.5124033 0.93330761 3 3.9904911 3.9904911 2.8778767 5.1031054 2.8778767 5.1031054 1.65628870 4 4.1508948 4.1508948 3.9331603 4.3686292 3.9331603 4.3686292 0.32412948 5 2.2452370 2.2452370 2.1479760 2.3424980 2.1428570 2.1428570 0.14478718 6 0.4031805 0.4031805 0.3675553 0.4388056 0.4406806 0.4406806 0.05303322 7 0.4393432 0.4393432 0.4255952 0.4530912 0.4538148 0.4538148 0.02046586 cv 1 0.34035330 2 0.32345277 3 0.41505887 4 0.07808665 5 0.06448637 6 0.13153717 7 0.04658286 attr(,"nOtolithsRemoved") [1] 73 138 attr(,"nOtolithsTotal") [1] 1598 1905 attr(,"nWithDatras") [1] 67 86 attr(,"nWithoutDatras") [1] 3320 5244 attr(,"nFoundWithin") [1] 3234 5032 attr(,"nNotFoundWithin") [1] 153 298 [1] "Done with calculating point estimate:" [1] 1.6974125 15.7674055 1.8297357 1.3354601 1.1524155 0.6886673 0.2851044 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:3:SWE:DANS:GOV:85:452 in year 2017 had more age observations of length 32 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:3:SWE:DANS:GOV:85:453 in year 2017 had more age observations of length 32 than lenght observations.”
[1] "Done with simulation 1:" [1] 1.4976246 15.6785430 1.6740724 1.2447708 0.9872306 0.6733159 0.3020815 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:3:SWE:DANS:GOV:85:453 in year 2017 had more age observations of length 32 than lenght observations.”
[1] "Done with simulation 1:" [1] 1.3515670 16.0701263 1.7043889 1.3057224 1.1762520 0.6949201 0.2718923 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.6974125 0 0 0 0 0 0 0 2 15.7674055 0 0 0 0 0 0 0 3 1.8297357 0 0 0 0 0 0 0 4 1.3354601 0 0 0 0 0 0 0 5 1.1524155 0 0 0 0 0 0 0 6 0.6886673 0 0 0 0 0 0 0 7 0.2851044 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.4245958 1.4245958 1.3552184 1.4939732 1.4976246 1.4976246 0.10327834 2 15.8743347 15.8743347 15.6883326 16.0603367 15.6883326 16.0603367 0.27689115 3 1.6892307 1.6892307 1.6748304 1.7036310 1.7043889 1.7043889 0.02143697 4 1.2752466 1.2752466 1.2462946 1.3041986 1.3057224 1.3057224 0.04309931 5 1.0817413 1.0817413 0.9919561 1.1715264 0.9919561 1.1715264 0.13365832 6 0.6841180 0.6841180 0.6738561 0.6943800 0.6738561 0.6943800 0.01527647 7 0.2869869 0.2869869 0.2726471 0.3013268 0.2726471 0.3013268 0.02134700 cv 1 0.07249659 2 0.01744269 3 0.01269037 4 0.03379685 5 0.12355849 6 0.02233017 7 0.07438316 attr(,"nOtolithsRemoved") [1] 48 40 attr(,"nOtolithsTotal") [1] 2240 2221 attr(,"nWithDatras") [1] 4 3 attr(,"nWithoutDatras") [1] 4222 4388 attr(,"nFoundWithin") [1] 4213 4379 attr(,"nNotFoundWithin") [1] 13 12 [1] "Done with calculating point estimate:" [1] 1.6974125 15.7421838 1.8495865 1.3356109 1.1547895 0.6911339 0.2854839 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 1.5535425 15.6476487 2.2070546 1.4330870 1.0830308 0.7146628 0.2608010 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 1.4124372 11.7820567 1.8216085 1.3179670 1.0910145 0.6192431 0.2911762 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.6974125 0 0 0 0 0 0 0 2 15.7421838 0 0 0 0 0 0 0 3 1.8495865 0 0 0 0 0 0 0 4 1.3356109 0 0 0 0 0 0 0 5 1.1547895 0 0 0 0 0 0 0 6 0.6911339 0 0 0 0 0 0 0 7 0.2854839 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.4829898 1.4829898 1.4159648 1.5500148 1.5535425 1.5535425 0.099776490 2 13.7148527 13.7148527 11.8786965 15.5510089 15.6476487 15.6476487 2.733386361 3 2.0143316 2.0143316 1.8312446 2.1974185 1.8312446 2.1974185 0.272551588 4 1.3755270 1.3755270 1.3208450 1.4302090 1.3208450 1.4302090 0.081402085 5 1.0870226 1.0870226 1.0832304 1.0908149 1.0910145 1.0910145 0.005645371 6 0.6669530 0.6669530 0.6216286 0.7122774 0.6216286 0.7122774 0.067471920 7 0.2759886 0.2759886 0.2615604 0.2904168 0.2615604 0.2904168 0.021478515 cv 1 0.067280629 2 0.199301182 3 0.135306219 4 0.059178835 5 0.005193426 6 0.101164432 7 0.077823925 attr(,"nOtolithsRemoved") [1] 151 164 attr(,"nOtolithsTotal") [1] 2414 2324 attr(,"nWithDatras") [1] 2 3 attr(,"nWithoutDatras") [1] 4540 3526 attr(,"nFoundWithin") [1] 4536 3520 attr(,"nNotFoundWithin") [1] 6 9 [1] "Done with calculating point estimate:" [1] 1.6978506 15.6124770 1.9838668 1.3294392 1.1622189 0.6861928 0.2841557 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 2.1662222 17.4339247 2.0907847 1.4101807 1.2140864 0.6562289 0.2653218 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 1.6077423 15.4722649 1.8177938 1.4099152 1.2188808 0.5692369 0.2426200 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.6978506 0 0 0 0 0 0 0 2 15.6124770 0 0 0 0 0 0 0 3 1.9838668 0 0 0 0 0 0 0 4 1.3294392 0 0 0 0 0 0 0 5 1.1622189 0 0 0 0 0 0 0 6 0.6861928 0 0 0 0 0 0 0 7 0.2841557 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 1 1.8869822 1.8869822 1.6217043 2.1522602 1.6217043 2.1522602 2 16.4530948 16.4530948 15.5213064 17.3848832 15.5213064 17.3848832 3 1.9542892 1.9542892 1.8246186 2.0839599 1.8246186 2.0839599 4 1.4100480 1.4100480 1.4099219 1.4101741 1.4099152 1.4099152 5 1.2164836 1.2164836 1.2142062 1.2187609 1.2140864 1.2140864 6 0.6127329 0.6127329 0.5714117 0.6540541 0.6562289 0.6562289 7 0.2539709 0.2539709 0.2431875 0.2647542 0.2653218 0.2653218 sd cv 1 0.3949048797 0.2092785358 2 1.3871029490 0.0843065070 3 0.1930336921 0.0987743721 4 0.0001877198 0.0001331301 5 0.0033901672 0.0027868582 6 0.0615126646 0.1003906674 7 0.0160525718 0.0632063464 attr(,"nOtolithsRemoved") [1] 212 170 attr(,"nOtolithsTotal") [1] 2453 2261 attr(,"nWithDatras") [1] 5 5 attr(,"nWithoutDatras") [1] 4911 4385 attr(,"nFoundWithin") [1] 4908 4380 attr(,"nNotFoundWithin") [1] 8 10 [1] "Done with calculating point estimate:" [1] 1.6974125 15.7359236 1.8735013 1.3191163 1.1606455 0.6844974 0.2851044 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 1.0385848 16.1025235 1.5547637 1.5300742 1.2081882 0.5073094 0.2187042 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 2.1416536 13.4691202 1.9914856 1.5444347 1.0984746 0.6100190 0.3026792 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.6974125 0 0 0 0 0 0 0 2 15.7359236 0 0 0 0 0 0 0 3 1.8735013 0 0 0 0 0 0 0 4 1.3191163 0 0 0 0 0 0 0 5 1.1606455 0 0 0 0 0 0 0 6 0.6844974 0 0 0 0 0 0 0 7 0.2851044 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.5901192 1.5901192 1.0661615 2.1140768 1.0661615 2.1140768 0.77998742 2 14.7858219 14.7858219 13.5349553 16.0366884 13.5349553 16.0366884 1.86209734 3 1.7731246 1.7731246 1.5656817 1.9805676 1.5656817 1.9805676 0.30880906 4 1.5372544 1.5372544 1.5304332 1.5440757 1.5300742 1.5300742 0.01015443 5 1.1533314 1.1533314 1.1012175 1.2054453 1.1012175 1.2054453 0.07757920 6 0.5586642 0.5586642 0.5098772 0.6074513 0.6100190 0.6100190 0.07262664 7 0.2606917 0.2606917 0.2208036 0.3005798 0.2208036 0.3005798 0.05937931 cv 1 0.490521368 2 0.125938034 3 0.174160946 4 0.006605565 5 0.067265316 6 0.130000529 7 0.227775978 attr(,"nOtolithsRemoved") [1] 200 390 attr(,"nOtolithsTotal") [1] 2227 2621 attr(,"nWithDatras") [1] 1 4 attr(,"nWithoutDatras") [1] 4135 4204 attr(,"nFoundWithin") [1] 4128 4201 attr(,"nNotFoundWithin") [1] 8 7 [1] "Done with calculating point estimate:" [1] 1.6989459 15.5480824 2.0587252 1.3183691 1.1540213 0.6964313 0.2816258 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1" [1] "Done with simulation 1:" [1] 1.1686725 12.8892706 1.8404195 1.3288197 1.2882420 0.5953535 0.2824903 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2" [1] "Done with simulation 1:" [1] 1.2413186 12.9144655 1.8997247 1.4700098 1.0460845 0.5320919 0.2694605 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.6989459 0 0 0 0 0 0 0 2 15.5480824 0 0 0 0 0 0 0 3 2.0587252 0 0 0 0 0 0 0 4 1.3183691 0 0 0 0 0 0 0 5 1.1540213 0 0 0 0 0 0 0 6 0.6964313 0 0 0 0 0 0 0 7 0.2816258 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 1.2049956 1.2049956 1.1704887 1.2395024 1.2413186 1.2413186 0.051368538 2 12.9018681 12.9018681 12.8899005 12.9138357 12.9144655 12.9144655 0.017815498 3 1.8700721 1.8700721 1.8419022 1.8982421 1.8997247 1.8997247 0.041935097 4 1.3994148 1.3994148 1.3323495 1.4664801 1.3288197 1.3288197 0.099836503 5 1.1671633 1.1671633 1.0521385 1.2821881 1.0521385 1.2821881 0.171231221 6 0.5637227 0.5637227 0.5336735 0.5937719 0.5953535 0.5953535 0.044732670 7 0.2759754 0.2759754 0.2697862 0.2821645 0.2697862 0.2821645 0.009213468 cv 1 0.042629650 2 0.001380846 3 0.022424321 4 0.071341610 5 0.146707168 6 0.079352260 7 0.033385110 attr(,"nOtolithsRemoved") [1] 365 342 attr(,"nOtolithsTotal") [1] 2403 2348 attr(,"nWithDatras") [1] 1 5 attr(,"nWithoutDatras") [1] 3712 3736 attr(,"nFoundWithin") [1] 3710 3730 attr(,"nNotFoundWithin") [1] 3 11
Error in if (whichIsMissing[i]) {: missing value where TRUE/FALSE needed Traceback: 1. investigateRemoval(species = species, year = year, quarter = quarter, . dat = dat, B = n, lengthDivision = lengthDivision, samplesWithinEachIntervall = samplesWithinEachIntervall) 2. CPUEnorthSea(species = species, year = year, quarter = quarter, . dat = dat, bootstrapProcedure = bootstrapProcedure, B = B, . ALKprocedure = ALKprocedure, doBootstrap = FALSE, lengthDivision = lengthDivision) 3. calcmCPUEnorthSea(species = species, year = year, quarter = quarter, . dat = dat, ALKprocedure = ALKprocedure, B = B, dimCPUE = dim(mCPUE), . lengthDivision = lengthDivision, useICESindexArea = useICESindexArea) 4. CPUErfa(RFA = RFA, species = species, year = year, quarter = quarter, . dat = dat, ALKprocedure = ALKprocedure, B = n, lengthDivision = lengthDivision, . useICESindexArea = useICESindexArea) 5. calculateALKHaulbased(RFA = RFA, species = species, year = year, . quarter = quarter, ca = dataCA, hl = dataHL, lengthDivision = lengthDivision, . dat = dat) 6. calculateALKDatras(RFA = RFA, species = species, year = year, . quarter = quarter, ca = caInterest, dat = dat, lengthDivision = lengthDivision)
#Resample data with different number of otoliths sampled within each length group------
dl = 5
ALKprocedure = "haulBased"
yearSpan = 2015:2018
quarters = c(1,3)
sampleOtolithSpan = c(2:5,999) #Note that 1 otolith was sampled in the previous experiement
for(quarter in quarters){
for(year in yearSpan){
dat = readIBTSData(survey = "NS-IBTS", year = year, quarter = quarter,species = species)
lengthDivision = c(seq(0,max(round(dat$ca_hh$LngtCm),round(dat$hl_hh$LngtCm)) + 2*dl,by = dl))
for(samplesWithinEachIntervall in sampleOtolithSpan){
set.seed(1455)
removeOtoliths = investigateRemoval(species = species, year = year, quarter = quarter,dat = dat,B = n,
lengthDivision = lengthDivision,
samplesWithinEachIntervall = samplesWithinEachIntervall)
#Save work
#saveRDS(removeOtoliths, file = paste("results/resamplingOtoliths/RemovalCodDl",dl,"year",year,"Q",quarter,"n", n,ALKprocedure,samplesWithinEachIntervall, sep= ""))
print(removeOtoliths)
}
}
}
[1] "Done with calculating point estimate:" [1] 0.0000000 3.2840880 10.5161319 5.0990000 1.9140373 0.6756445 0.5671488 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7978110 10.6045552 3.8195124 1.6258971 0.5407338 0.5934673 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2335 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2336 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7821069 9.6664722 5.4764360 1.7697602 0.5053359 0.5616395 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2840880 0 0 0 0 0 0 0 3 10.5161319 0 0 0 0 0 0 0 4 5.0990000 0 0 0 0 0 0 0 5 1.9140373 0 0 0 0 0 0 0 6 0.6756445 0 0 0 0 0 0 0 7 0.5671488 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 3.7899589 3.7899589 3.7824995 3.7974184 3.7821069 3.7821069 0.01110446 3 10.1355137 10.1355137 9.6899243 10.5811032 9.6899243 10.5811032 0.66332486 4 4.6479742 4.6479742 3.8609355 5.4350129 3.8609355 5.4350129 1.17162192 5 1.6978286 1.6978286 1.6294936 1.7661636 1.7697602 1.7697602 0.10172657 6 0.5230348 0.5230348 0.5062208 0.5398488 0.5407338 0.5407338 0.02503008 7 0.5775534 0.5775534 0.5624352 0.5926716 0.5624352 0.5926716 0.02250563 cv 1 NaN 2 0.002929968 3 0.065445608 4 0.252071518 5 0.059915691 6 0.047855482 7 0.038967194 attr(,"nOtolithsRemoved") [1] 1051 1208 attr(,"nOtolithsTotal") [1] 2663 2900 attr(,"nWithDatras") [1] 17 18 attr(,"nWithoutDatras") [1] 3758 4314 attr(,"nFoundWithin") [1] 3543 4177 attr(,"nNotFoundWithin") [1] 232 155 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2840880 10.5161319 5.0990000 1.9140373 0.6756445 0.5671488 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.8151114 9.7659250 4.8542305 1.5180919 0.5099594 0.5186584 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2335 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2336 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.8329678 10.9472252 5.1269942 2.1937140 0.9618015 0.8648973 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2840880 0 0 0 0 0 0 0 3 10.5161319 0 0 0 0 0 0 0 4 5.0990000 0 0 0 0 0 0 0 5 1.9140373 0 0 0 0 0 0 0 6 0.6756445 0 0 0 0 0 0 0 7 0.5671488 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 2 3.8240396 3.8240396 3.8155578 3.8325214 3.8151114 3.8151114 0.0126264 3 10.3565751 10.3565751 9.7954575 10.9176927 9.7954575 10.9176927 0.8353054 4 4.9906124 4.9906124 4.8610496 5.1201751 4.8610496 5.1201751 0.1928730 5 1.8559029 1.8559029 1.5349824 2.1768235 1.5349824 2.1768235 0.4777370 6 0.7358805 0.7358805 0.5212555 0.9505055 0.5212555 0.9505055 0.3195006 7 0.6917779 0.6917779 0.5273144 0.8562413 0.5273144 0.8562413 0.2448279 cv 1 NaN 2 0.003301849 3 0.080654598 4 0.038647168 5 0.257414849 6 0.434174618 7 0.353911132 attr(,"nOtolithsRemoved") [1] 747 917 attr(,"nOtolithsTotal") [1] 2663 2991 attr(,"nWithDatras") [1] 16 11 attr(,"nWithoutDatras") [1] 3759 4276 attr(,"nFoundWithin") [1] 3543 4134 attr(,"nNotFoundWithin") [1] 232 153 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2840880 10.5161319 5.0990000 1.9140373 0.6756445 0.5671488 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7834978 10.5586054 4.0915322 1.4473247 0.6449808 0.4560358 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3010 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:683 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2333 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 13 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 4.4731423 11.1765925 5.1006546 2.0652528 0.9316979 1.0068970 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2840880 0 0 0 0 0 0 0 3 10.5161319 0 0 0 0 0 0 0 4 5.0990000 0 0 0 0 0 0 0 5 1.9140373 0 0 0 0 0 0 0 6 0.6756445 0 0 0 0 0 0 0 7 0.5671488 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 2 4.1283201 4.1283201 3.8007389 4.4559012 3.7834978 3.7834978 0.4876523 3 10.8675990 10.8675990 10.5740551 11.1611428 10.5586054 10.5586054 0.4369829 4 4.5960934 4.5960934 4.1167602 5.0754265 4.1167602 5.0754265 0.7135573 5 1.7562887 1.7562887 1.4627729 2.0498046 1.4627729 2.0498046 0.4369411 6 0.7883394 0.7883394 0.6521487 0.9245300 0.6521487 0.9245300 0.2027396 7 0.7314664 0.7314664 0.4698073 0.9931255 0.4698073 0.9931255 0.3895177 cv 1 NaN 2 0.1181237 3 0.0402097 4 0.1552530 5 0.2487866 6 0.2571731 7 0.5325162 attr(,"nOtolithsRemoved") [1] 530 838 attr(,"nOtolithsTotal") [1] 2663 3178 attr(,"nWithDatras") [1] 15 19 attr(,"nWithoutDatras") [1] 3760 4260 attr(,"nFoundWithin") [1] 3547 4096 attr(,"nNotFoundWithin") [1] 228 183 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2840880 10.5161319 5.0990000 1.9140373 0.6756445 0.5671488 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7725882 10.5005055 4.1754578 1.4922895 0.5290091 0.5121265 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:3011 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2335 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:911 in year 2015 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 13 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.9974499 10.7892298 5.4991099 2.2725349 0.8535764 0.7102139 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2840880 0 0 0 0 0 0 0 3 10.5161319 0 0 0 0 0 0 0 4 5.0990000 0 0 0 0 0 0 0 5 1.9140373 0 0 0 0 0 0 0 6 0.6756445 0 0 0 0 0 0 0 7 0.5671488 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 2 3.8850191 3.8850191 3.7782097 3.9918284 3.7725882 3.7725882 0.1590013 3 10.6448677 10.6448677 10.5077236 10.7820117 10.5077236 10.7820117 0.2041589 4 4.8372839 4.8372839 4.2085491 5.4660186 4.2085491 5.4660186 0.9359634 5 1.8824122 1.8824122 1.5117956 2.2530288 1.5117956 2.2530288 0.5517168 6 0.6912928 0.6912928 0.5371233 0.8454622 0.5371233 0.8454622 0.2295037 7 0.6111702 0.6111702 0.5170787 0.7052617 0.5170787 0.7052617 0.1400689 cv 1 NaN 2 0.04092676 3 0.01917910 4 0.19348945 5 0.29309033 6 0.33199207 7 0.22918151 attr(,"nOtolithsRemoved") [1] 399 576 attr(,"nOtolithsTotal") [1] 2663 3059 attr(,"nWithDatras") [1] 15 18 attr(,"nWithoutDatras") [1] 3760 4219 attr(,"nFoundWithin") [1] 3545 4030 attr(,"nNotFoundWithin") [1] 230 207 [1] "Done with calculating point estimate:" [1] 0.0000000 3.2840880 10.5161319 5.0990000 1.9140373 0.6756445 0.5671488 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5024 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0138:684 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7801632 10.4440541 4.1672815 1.5264119 0.5586944 0.5053715 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:172:5025 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4049 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:GFR:WAH3:GOV:140:4050 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 4 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:NED:ENDN:GOV:42E830:305 in year 2015 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0039:2334 in year 2015 had more age observations of length 11 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1937 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0030:1938 in year 2015 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2039 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0031:2040 in year 2015 had more age observations of length 12 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 9 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2015:1:FRA:THA2:GOV:T0190:912 in year 2015 had more age observations of length 13 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 3.7850607 11.0111492 5.2438668 2.1379384 0.6788494 0.5698984 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 3.2840880 0 0 0 0 0 0 0 3 10.5161319 0 0 0 0 0 0 0 4 5.0990000 0 0 0 0 0 0 0 5 1.9140373 0 0 0 0 0 0 0 6 0.6756445 0 0 0 0 0 0 0 7 0.5671488 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.000000000 2 3.7826120 3.7826120 3.7802857 3.7849383 3.7801632 3.7801632 0.003463048 3 10.7276017 10.7276017 10.4582315 10.9969718 10.4582315 10.9969718 0.400996756 4 4.7055741 4.7055741 4.1941961 5.2169522 4.1941961 5.2169522 0.761260755 5 1.8321752 1.8321752 1.5417001 2.1226503 1.5417001 2.1226503 0.432414527 6 0.6187719 0.6187719 0.5616983 0.6758455 0.5616983 0.6758455 0.084962378 7 0.5376349 0.5376349 0.5069846 0.5682852 0.5069846 0.5682852 0.045627405 cv 1 NaN 2 0.0009155177 3 0.0373799074 4 0.1617785057 5 0.2360115623 6 0.1373080800 7 0.0848668940 attr(,"nOtolithsRemoved") [1] 9 16 attr(,"nOtolithsTotal") [1] 2663 2871 attr(,"nWithDatras") [1] 15 15 attr(,"nWithoutDatras") [1] 3760 4216 attr(,"nFoundWithin") [1] 3543 3921 attr(,"nNotFoundWithin") [1] 232 310 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4347526 4.0663071 6.1109569 2.7272565 0.9338732 0.6690504 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:925 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3962047 2.6018041 5.7928020 2.1418924 1.0077586 0.6076458 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.2876066 4.6509492 6.2265115 2.6050814 0.9719161 0.6577347 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4347526 0 0 0 0 0 0 0 3 4.0663071 0 0 0 0 0 0 0 4 6.1109569 0 0 0 0 0 0 0 5 2.7272565 0 0 0 0 0 0 0 6 0.9338732 0 0 0 0 0 0 0 7 0.6690504 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.3419056 1.3419056 1.2903215 1.3934897 1.3962047 1.3962047 0.07679045 3 3.6263766 3.6263766 2.6530327 4.5997205 2.6530327 4.5997205 1.44896440 4 6.0096567 6.0096567 5.8036448 6.2156687 5.8036448 6.2156687 0.30667888 5 2.3734869 2.3734869 2.1534721 2.5935017 2.6050814 2.6050814 0.32752409 6 0.9898374 0.9898374 0.9728121 1.0068626 0.9719161 0.9719161 0.02534450 7 0.6326902 0.6326902 0.6088980 0.6564825 0.6577347 0.6577347 0.03541825 cv 1 NaN 2 0.05722493 3 0.39956258 4 0.05103101 5 0.13799279 6 0.02560471 7 0.05598039 attr(,"nOtolithsRemoved") [1] 496 667 attr(,"nOtolithsTotal") [1] 1831 2138 attr(,"nWithDatras") [1] 17 13 attr(,"nWithoutDatras") [1] 2372 3369 attr(,"nFoundWithin") [1] 2331 3320 attr(,"nNotFoundWithin") [1] 58 62 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4347526 4.0663071 6.1109569 2.7272565 0.9338732 0.6690504 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:925 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3981322 2.6709080 5.7553937 2.2291776 0.8506080 0.6438881 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3709513 3.2255938 6.5513213 2.0534422 0.8647168 0.5513649 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4347526 0 0 0 0 0 0 0 3 4.0663071 0 0 0 0 0 0 0 4 6.1109569 0 0 0 0 0 0 0 5 2.7272565 0 0 0 0 0 0 0 6 0.9338732 0 0 0 0 0 0 0 7 0.6690504 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.000000000 2 1.3845418 1.3845418 1.3716309 1.3974527 1.3981322 1.3981322 0.019219760 3 2.9482509 2.9482509 2.6847751 3.2117266 3.2255938 3.2255938 0.392222075 4 6.1533575 6.1533575 5.7752919 6.5314231 5.7752919 6.5314231 0.562805775 5 2.1413099 2.1413099 2.0578356 2.2247842 2.2291776 2.2291776 0.124263710 6 0.8576624 0.8576624 0.8509607 0.8643641 0.8647168 0.8647168 0.009976447 7 0.5976265 0.5976265 0.5536780 0.6415750 0.6438881 0.6438881 0.065423721 cv 1 NaN 2 0.01388168 3 0.13303552 4 0.09146320 5 0.05803163 6 0.01163214 7 0.10947259 attr(,"nOtolithsRemoved") [1] 303 404 attr(,"nOtolithsTotal") [1] 1831 1940 attr(,"nWithDatras") [1] 17 13 attr(,"nWithoutDatras") [1] 2372 2697 attr(,"nFoundWithin") [1] 2331 2664 attr(,"nNotFoundWithin") [1] 58 46 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4347526 4.0663071 6.1109569 2.7272565 0.9338732 0.6690504 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:925 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.4050924 2.6514593 5.7012316 2.1626708 0.9833733 0.6442802 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:927 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.1917233 3.6918628 6.0259854 1.9901905 0.8055054 0.4333076 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4347526 0 0 0 0 0 0 0 3 4.0663071 0 0 0 0 0 0 0 4 6.1109569 0 0 0 0 0 0 0 5 2.7272565 0 0 0 0 0 0 0 6 0.9338732 0 0 0 0 0 0 0 7 0.6690504 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 2 1.2984078 1.2984078 1.1970575 1.3997581 1.4050924 1.4050924 0.1508747 3 3.1716611 3.1716611 2.6774694 3.6658527 3.6918628 3.6918628 0.7356763 4 5.8636085 5.8636085 5.7093504 6.0178665 6.0259854 6.0259854 0.2296356 5 2.0764307 2.0764307 1.9945025 2.1583588 2.1626708 2.1626708 0.1219620 6 0.8944393 0.8944393 0.8099521 0.9789266 0.8099521 0.9789266 0.1257716 7 0.5387939 0.5387939 0.4385819 0.6390059 0.6442802 0.6442802 0.1491802 cv 1 NaN 2 0.11619979 3 0.23195301 4 0.03916285 5 0.05873636 6 0.14061503 7 0.27687796 attr(,"nOtolithsRemoved") [1] 196 234 attr(,"nOtolithsTotal") [1] 1831 1919 attr(,"nWithDatras") [1] 17 11 attr(,"nWithoutDatras") [1] 2372 2940 attr(,"nFoundWithin") [1] 2331 2864 attr(,"nNotFoundWithin") [1] 58 87 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4347526 4.0663071 6.1109569 2.7272565 0.9338732 0.6690504 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:925 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.4050924 2.6554706 5.6981703 2.2526827 0.9341123 0.6025792 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4311 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.5806631 3.6962759 6.2483661 2.1468327 0.8952676 0.5893831 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4347526 0 0 0 0 0 0 0 3 4.0663071 0 0 0 0 0 0 0 4 6.1109569 0 0 0 0 0 0 0 5 2.7272565 0 0 0 0 0 0 0 6 0.9338732 0 0 0 0 0 0 0 7 0.6690504 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.4928777 1.4928777 1.4094816 1.5762738 1.4094816 1.5762738 0.12414722 3 3.1758733 3.1758733 2.6814908 3.6702558 3.6962759 3.6962759 0.73596048 4 5.9732682 5.9732682 5.7119252 6.2346112 5.7119252 6.2346112 0.38904712 5 2.1997577 2.1997577 2.1494789 2.2500364 2.2526827 2.2526827 0.07484723 6 0.9146900 0.9146900 0.8962387 0.9331412 0.8962387 0.9331412 0.02746741 7 0.5959812 0.5959812 0.5897130 0.6022493 0.6025792 0.6025792 0.00933106 cv 1 NaN 2 0.08315967 3 0.23173484 4 0.06513137 5 0.03402522 6 0.03002920 7 0.01565664 attr(,"nOtolithsRemoved") [1] 137 121 attr(,"nOtolithsTotal") [1] 1831 1840 attr(,"nWithDatras") [1] 17 13 attr(,"nWithoutDatras") [1] 2372 2683 attr(,"nFoundWithin") [1] 2331 2613 attr(,"nNotFoundWithin") [1] 58 83 [1] "Done with calculating point estimate:" [1] 0.0000000 1.4347526 4.0663071 6.1109569 2.7272565 0.9338732 0.6690504 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 13 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:GFR:WAH3:GOV:223:4312 in year 2016 had more age observations of length 14 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:925 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.3981322 2.5910514 5.7317603 2.2439484 0.9416064 0.6416089 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2627 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:NED:ENDN:GOV:41E726:2628 in year 2016 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2016:1:SWE:DANS:GOV:23:924 in year 2016 had more age observations of length 14 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 1.5331476 3.9817038 5.9330538 2.3943595 0.9263473 0.5123618 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0 0 0 0 0 0 0 2 1.4347526 0 0 0 0 0 0 0 3 4.0663071 0 0 0 0 0 0 0 4 6.1109569 0 0 0 0 0 0 0 5 2.7272565 0 0 0 0 0 0 0 6 0.9338732 0 0 0 0 0 0 0 7 0.6690504 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.00000000 2 1.4656399 1.4656399 1.4015076 1.5297722 1.4015076 1.5297722 0.09547029 3 3.2863776 3.2863776 2.6258177 3.9469375 3.9817038 3.9817038 0.98333974 4 5.8324070 5.8324070 5.7367926 5.9280214 5.9330538 5.9330538 0.14233598 5 2.3191540 2.3191540 2.2477087 2.3905992 2.3943595 2.3943595 0.10635665 6 0.9339769 0.9339769 0.9267288 0.9412249 0.9267288 0.9412249 0.01078977 7 0.5769854 0.5769854 0.5155930 0.6383777 0.6416089 0.6416089 0.09139146 cv 1 NaN 2 0.06513898 3 0.29921691 4 0.02440433 5 0.04586011 6 0.01155250 7 0.15839477 attr(,"nOtolithsRemoved") [1] 4 3 attr(,"nOtolithsTotal") [1] 1831 2072 attr(,"nWithDatras") [1] 17 11 attr(,"nWithoutDatras") [1] 2372 3193 attr(,"nFoundWithin") [1] 2333 3146 attr(,"nNotFoundWithin") [1] 56 58 [1] "Done with calculating point estimate:" [1] 0.000000 8.839867 2.352294 3.202627 3.138568 1.458154 0.825623 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.371536 2.304649 3.148588 2.837696 1.349196 1.190566 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:479 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.0000000 8.9044333 2.1570688 2.9475278 2.5790608 1.3794486 0.4081546 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0 0 0 0 0 0 0 2 8.839867 0 0 0 0 0 0 0 3 2.352294 0 0 0 0 0 0 0 4 3.202627 0 0 0 0 0 0 0 5 3.138568 0 0 0 0 0 0 0 6 1.458154 0 0 0 0 0 0 0 7 0.825623 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.0000000 0.0000000 0.0000000 0.000000 0.0000000 0.000000 0.00000000 2 8.6379845 8.6379845 8.3848581 8.891111 8.3848581 8.891111 0.37681548 3 2.2308591 2.2308591 2.1607584 2.300960 2.3046493 2.304649 0.10435515 4 3.0480580 3.0480580 2.9525543 3.143562 3.1485883 3.148588 0.14217121 5 2.7083784 2.7083784 2.5855267 2.831230 2.8376960 2.837696 0.18288266 6 1.3643221 1.3643221 1.3499519 1.378692 1.3794486 1.379449 0.02139214 7 0.7993603 0.7993603 0.4277149 1.171006 0.4277149 1.171006 0.55324848 cv 1 NaN 2 0.04362308 3 0.04677801 4 0.04664321 5 0.06752478 6 0.01567969 7 0.69211401 attr(,"nOtolithsRemoved") [1] 804 713 attr(,"nOtolithsTotal") [1] 2546 2469 attr(,"nWithDatras") [1] 15 24 attr(,"nWithoutDatras") [1] 4192 3649 attr(,"nFoundWithin") [1] 4181 3638 attr(,"nNotFoundWithin") [1] 26 35 [1] "Done with calculating point estimate:" [1] 0.000000 8.839867 2.352294 3.202627 3.138568 1.458154 0.825623 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.369581 2.327636 3.057467 2.820785 1.338482 1.288279 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 9.816370 2.687629 4.299964 3.908265 1.307746 1.365307 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0 0 0 0 0 0 0 2 8.839867 0 0 0 0 0 0 0 3 2.352294 0 0 0 0 0 0 0 4 3.202627 0 0 0 0 0 0 0 5 3.138568 0 0 0 0 0 0 0 6 1.458154 0 0 0 0 0 0 0 7 0.825623 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd cv 1 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.00000000 NaN 2 9.092976 9.092976 8.405751 9.780201 8.405751 9.780201 1.02303422 0.11250819 3 2.507632 2.507632 2.336636 2.678629 2.336636 2.678629 0.25455373 0.10151158 4 3.678716 3.678716 3.088530 4.268901 3.088530 4.268901 0.87857769 0.23882729 5 3.364525 3.364525 2.847972 3.881078 2.847972 3.881078 0.76896450 0.22855070 6 1.323114 1.323114 1.308515 1.337714 1.338482 1.338482 0.02173347 0.01642600 7 1.326793 1.326793 1.290205 1.363381 1.288279 1.288279 0.05446677 0.04105144 attr(,"nOtolithsRemoved") [1] 513 524 attr(,"nOtolithsTotal") [1] 2546 2660 attr(,"nWithDatras") [1] 15 32 attr(,"nWithoutDatras") [1] 4192 5090 attr(,"nFoundWithin") [1] 4181 5073 attr(,"nNotFoundWithin") [1] 26 48 [1] "Done with calculating point estimate:" [1] 0.000000 8.839867 2.352294 3.202627 3.138568 1.458154 0.825623 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.370262 2.339074 2.964939 2.934455 1.443052 1.150449 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3121 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 9.330311 2.357974 3.353048 2.506827 1.435109 1.377171 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0 0 0 0 0 0 0 2 8.839867 0 0 0 0 0 0 0 3 2.352294 0 0 0 0 0 0 0 4 3.202627 0 0 0 0 0 0 0 5 3.138568 0 0 0 0 0 0 0 6 1.458154 0 0 0 0 0 0 0 7 0.825623 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000000 2 8.850286 8.850286 8.394263 9.306310 8.394263 9.306310 0.678857509 3 2.348524 2.348524 2.339547 2.357501 2.339547 2.357501 0.013363960 4 3.158994 3.158994 2.974642 3.343346 2.974642 3.343346 0.274434850 5 2.720641 2.720641 2.517518 2.923764 2.934455 2.934455 0.302378641 6 1.439081 1.439081 1.435307 1.442854 1.443052 1.443052 0.005616955 7 1.263810 1.263810 1.156117 1.371503 1.150449 1.150449 0.160317219 cv 1 NaN 2 0.076704580 3 0.005690365 4 0.086874141 5 0.111142426 6 0.003903156 7 0.126852314 attr(,"nOtolithsRemoved") [1] 328 285 attr(,"nOtolithsTotal") [1] 2546 2578 attr(,"nWithDatras") [1] 14 14 attr(,"nWithoutDatras") [1] 4193 4623 attr(,"nFoundWithin") [1] 4181 4611 attr(,"nNotFoundWithin") [1] 26 26 [1] "Done with calculating point estimate:" [1] 0.000000 8.839867 2.352294 3.202627 3.138568 1.458154 0.825623 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.360981 2.325980 3.165845 2.761886 1.340727 1.246811 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3781 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1223 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:479 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 9.814863 2.123886 3.033260 3.383843 1.517086 1.372045 $WithFullData mCPUE bootstrapMean median Q025 Q975 BiasCQ025 BiasCQ075 sd 1 0.000000 0 0 0 0 0 0 0 2 8.839867 0 0 0 0 0 0 0 3 2.352294 0 0 0 0 0 0 0 4 3.202627 0 0 0 0 0 0 0 5 3.138568 0 0 0 0 0 0 0 6 1.458154 0 0 0 0 0 0 0 7 0.825623 0 0 0 0 0 0 0 $mCPUE mean median Q025 Q975 BiasCQ025 BiasCQ075 sd cv 1 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.00000000 NaN 2 9.087922 9.087922 8.397329 9.778516 8.397329 9.778516 1.02804922 0.11312258 3 2.224933 2.224933 2.128938 2.320928 2.325980 2.325980 0.14290201 0.06422756 4 3.099553 3.099553 3.036574 3.162531 3.165845 3.165845 0.09375214 0.03024699 5 3.072864 3.072864 2.777435 3.368294 2.777435 3.368294 0.43978978 0.14312047 6 1.428907 1.428907 1.345136 1.512677 1.345136 1.512677 0.12470506 0.08727307 7 1.309428 1.309428 1.249942 1.368914 1.246811 1.246811 0.08855358 0.06762768 attr(,"nOtolithsRemoved") [1] 222 225 attr(,"nOtolithsTotal") [1] 2546 2616 attr(,"nWithDatras") [1] 14 22 attr(,"nWithoutDatras") [1] 4193 4686 attr(,"nFoundWithin") [1] 4181 4666 attr(,"nNotFoundWithin") [1] 26 42 [1] "Done with calculating point estimate:" [1] 0.000000 8.839867 2.352294 3.202627 3.138568 1.458154 0.825623 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 1"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4060 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:241 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2519 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:478 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:4710 in year 2017 had more age observations of length 6 than lenght observations.”
[1] "Done with simulation 1:" [1] 0.000000 8.370262 2.303997 3.192951 2.690888 1.420057 1.224076 [1] "Information about progress in otholit removal simulation: " [1] "Simulation 2"
Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:127:4061 in year 2017 had more age observations of length 10 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:GFR:WAH3:GOV:116:3782 in year 2017 had more age observations of length 15 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40F212:1222 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0047:242 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E825:2520 in year 2017 had more age observations of length 5 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:NED:TRI2:GOV:40E931:3122 in year 2017 had more age observations of length 6 than lenght observations.” Warning message in sampleCAHaul(obsThisHaul, lengthDivision, samplesWithinEachIntervall, : “Haul with ID 2017:1:FRA:THA2:GOV:V0103:479 in year 2017 had more age observations of length 6 than lenght observations.”
#Resample different number of hauls and ages.
bootstrapProcedure = "datrasHLstratifiedCA"
ALKprocedure = "datras"
dl=5
yearSpan = 2015:2018
quarters = c(1,3)
Nspan = c(50,75,100,200,300,400,500)
sampleOtolithSpan = c(1,5)
for(quarter in quarters){
for(year in yearSpan){
dat = readIBTSData(survey = "NS-IBTS", year = year, quarter = quarter,species = species)
for(N in Nspan) {
for(samplesWithinEachIntervall in sampleOtolithSpan){
set.seed(1455)
lengthDivision = c(seq(0,max(round(dat$ca_hh$LngtCm),round(dat$hl_hh$LngtCm)) + 2*dl,by = dl))
mCPUEStratifiedHL = CPUEnorthSea(species = species, year = year, quarter = quarter,dat = dat,
bootstrapProcedure = bootstrapProcedure, B = n, ALKprocedure = ALKprocedure,
onlySimulate = TRUE,nSimHauls = N,samplesWithinEachIntervall = samplesWithinEachIntervall)
#saveRDS(mCPUEStratifiedHL, file = paste("results/resamplingNandotoliths/resampleCodDl",dl,"N",N,"year",year,"Q",quarter,"n", n,ALKprocedure,samplesWithinEachIntervall, sep= ""))
print(mCPUEStratifiedHL)
}
}
}
}