> library(filelock)
> runOneTimeline <- function(iterSim, saveRaw) {
+ set.seed(0)
+ codeDir <- paste0(homeDir, "codes")
+ paramFileDir <- paste0(homeDir, "pa ..." ... [TRUNCATED]
> combIndex <- 1
> iterIndex <- 1
> homeDir <- paste0(getwd(), "/")
> modelName <- "had"
> saveAllRawData <- FALSE
> resultFinal <- runOneTimeline(iterIndex, saveAllRawData)
Gadget version 2.2.00-BETA running on b6cfeb53304d Thu Jan 14 23:38:59 2021
Starting Gadget from directory: /home/jovyan/flr-gadget/models/had
using data from directory: /home/jovyan/flr-gadget/models/had
Finished reading model data files, starting to run simulation
[1] "1 10"
[1] "had"
[1] "1978"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1979"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1980"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1981"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1982"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1983"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1984"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1985"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1986"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1987"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1988"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1989"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1990"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1991"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1992"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1993"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1994"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1995"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1996"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1997"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1998"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
[1] "had"
[1] "1999"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2000 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 40965968.475215"
[1] 40965968
Step is 89
Change fleet "future" - Step: 89 - Area: 1 with 9.5041e+06
Value before 0
Value after 9.5041e+06
Step is 90
Change fleet "future" - Step: 90 - Area: 1 with 1.43791e+07
Value before 0
Value after 1.43791e+07
Step is 91
Change fleet "future" - Step: 91 - Area: 1 with 1.22079e+07
Value before 0
Value after 1.22079e+07
Step is 92
Change fleet "future" - Step: 92 - Area: 1 with 4.87495e+06
Value before 0
Value after 4.87495e+06
[1] "Now running gadget for 2000"
[1] "Now inserting gadget data for 2000"
[1] "2000"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2001 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 32963416.916951"
[1] 32963417
Step is 93
Change fleet "future" - Step: 93 - Area: 1 with 7.64751e+06
Value before 0
Value after 7.64751e+06
Step is 94
Change fleet "future" - Step: 94 - Area: 1 with 1.15702e+07
Value before 0
Value after 1.15702e+07
Step is 95
Change fleet "future" - Step: 95 - Area: 1 with 9.8231e+06
Value before 0
Value after 9.8231e+06
Step is 96
Change fleet "future" - Step: 96 - Area: 1 with 3.92265e+06
Value before 0
Value after 3.92265e+06
[1] "Now running gadget for 2001"
[1] "Now inserting gadget data for 2001"
[1] "2001"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2002 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 44068125.3864817"
[1] 44068125
Step is 97
Change fleet "future" - Step: 97 - Area: 1 with 1.02238e+07
Value before 0
Value after 1.02238e+07
Step is 98
Change fleet "future" - Step: 98 - Area: 1 with 1.54679e+07
Value before 0
Value after 1.54679e+07
Step is 99
Change fleet "future" - Step: 99 - Area: 1 with 1.31323e+07
Value before 0
Value after 1.31323e+07
Step is 100
Change fleet "future" - Step: 100 - Area: 1 with 5.24411e+06
Value before 0
Value after 5.24411e+06
[1] "Now running gadget for 2002"
[1] "Now inserting gadget data for 2002"
[1] "2002"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2003 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 33883783.2674362"
[1] 33883783
Step is 101
Change fleet "future" - Step: 101 - Area: 1 with 7.86104e+06
Value before 0
Value after 7.86104e+06
Step is 102
Change fleet "future" - Step: 102 - Area: 1 with 1.18932e+07
Value before 0
Value after 1.18932e+07
Step is 103
Change fleet "future" - Step: 103 - Area: 1 with 1.00974e+07
Value before 0
Value after 1.00974e+07
Step is 104
Change fleet "future" - Step: 104 - Area: 1 with 4.03217e+06
Value before 0
Value after 4.03217e+06
[1] "Now running gadget for 2003"
[1] "Now inserting gadget data for 2003"
[1] "2003"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2004 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 29529509.8597003"
[1] 29529510
Step is 105
Change fleet "future" - Step: 105 - Area: 1 with 6.85085e+06
Value before 0
Value after 6.85085e+06
Step is 106
Change fleet "future" - Step: 106 - Area: 1 with 1.03649e+07
Value before 0
Value after 1.03649e+07
Step is 107
Change fleet "future" - Step: 107 - Area: 1 with 8.79979e+06
Value before 0
Value after 8.79979e+06
Step is 108
Change fleet "future" - Step: 108 - Area: 1 with 3.51401e+06
Value before 0
Value after 3.51401e+06
[1] "Now running gadget for 2004"
[1] "Now inserting gadget data for 2004"
[1] "2004"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2005 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 29026452.5435172"
[1] 29026453
Step is 109
Change fleet "future" - Step: 109 - Area: 1 with 6.73414e+06
Value before 0
Value after 6.73414e+06
Step is 110
Change fleet "future" - Step: 110 - Area: 1 with 1.01883e+07
Value before 0
Value after 1.01883e+07
Step is 111
Change fleet "future" - Step: 111 - Area: 1 with 8.64988e+06
Value before 0
Value after 8.64988e+06
Step is 112
Change fleet "future" - Step: 112 - Area: 1 with 3.45415e+06
Value before 0
Value after 3.45415e+06
[1] "Now running gadget for 2005"
[1] "Now inserting gadget data for 2005"
[1] "2005"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2006 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 26367343.5448014"
[1] 26367344
Step is 113
Change fleet "future" - Step: 113 - Area: 1 with 6.11722e+06
Value before 0
Value after 6.11722e+06
Step is 114
Change fleet "future" - Step: 114 - Area: 1 with 9.25494e+06
Value before 0
Value after 9.25494e+06
Step is 115
Change fleet "future" - Step: 115 - Area: 1 with 7.85747e+06
Value before 0
Value after 7.85747e+06
Step is 116
Change fleet "future" - Step: 116 - Area: 1 with 3.13771e+06
Value before 0
Value after 3.13771e+06
[1] "Now running gadget for 2006"
[1] "Now inserting gadget data for 2006"
[1] "2006"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2007 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 27377185.0525068"
[1] 27377185
Step is 117
Change fleet "future" - Step: 117 - Area: 1 with 6.35151e+06
Value before 0
Value after 6.35151e+06
Step is 118
Change fleet "future" - Step: 118 - Area: 1 with 9.60939e+06
Value before 0
Value after 9.60939e+06
Step is 119
Change fleet "future" - Step: 119 - Area: 1 with 8.1584e+06
Value before 0
Value after 8.1584e+06
Step is 120
Change fleet "future" - Step: 120 - Area: 1 with 3.25789e+06
Value before 0
Value after 3.25789e+06
[1] "Now running gadget for 2007"
[1] "Now inserting gadget data for 2007"
[1] "2007"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2008 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 25733145.1560903"
[1] 25733145
Step is 121
Change fleet "future" - Step: 121 - Area: 1 with 5.97009e+06
Value before 0
Value after 5.97009e+06
Step is 122
Change fleet "future" - Step: 122 - Area: 1 with 9.03233e+06
Value before 0
Value after 9.03233e+06
Step is 123
Change fleet "future" - Step: 123 - Area: 1 with 7.66848e+06
Value before 0
Value after 7.66848e+06
Step is 124
Change fleet "future" - Step: 124 - Area: 1 with 3.06224e+06
Value before 0
Value after 3.06224e+06
[1] "Now running gadget for 2008"
[1] "Now inserting gadget data for 2008"
[1] "2008"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2009 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 24936462.2861008"
[1] 24936462
Step is 125
Change fleet "future" - Step: 125 - Area: 1 with 5.78526e+06
Value before 0
Value after 5.78526e+06
Step is 126
Change fleet "future" - Step: 126 - Area: 1 with 8.7527e+06
Value before 0
Value after 8.7527e+06
Step is 127
Change fleet "future" - Step: 127 - Area: 1 with 7.43107e+06
Value before 0
Value after 7.43107e+06
Step is 128
Change fleet "future" - Step: 128 - Area: 1 with 2.96744e+06
Value before 0
Value after 2.96744e+06
[1] "Now running gadget for 2009"
[1] "Now inserting gadget data for 2009"
[1] "2009"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2010 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 25580201.9294413"
[1] 25580202
Step is 129
Change fleet "future" - Step: 129 - Area: 1 with 5.93461e+06
Value before 0
Value after 5.93461e+06
Step is 130
Change fleet "future" - Step: 130 - Area: 1 with 8.97865e+06
Value before 0
Value after 8.97865e+06
Step is 131
Change fleet "future" - Step: 131 - Area: 1 with 7.6229e+06
Value before 0
Value after 7.6229e+06
Step is 132
Change fleet "future" - Step: 132 - Area: 1 with 3.04404e+06
Value before 0
Value after 3.04404e+06
[1] "Now running gadget for 2010"
[1] "Now inserting gadget data for 2010"
[1] "2010"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2011 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 24675251.9285416"
[1] 24675252
Step is 133
Change fleet "future" - Step: 133 - Area: 1 with 5.72466e+06
Value before 0
Value after 5.72466e+06
Step is 134
Change fleet "future" - Step: 134 - Area: 1 with 8.66101e+06
Value before 0
Value after 8.66101e+06
Step is 135
Change fleet "future" - Step: 135 - Area: 1 with 7.35323e+06
Value before 0
Value after 7.35323e+06
Step is 136
Change fleet "future" - Step: 136 - Area: 1 with 2.93635e+06
Value before 0
Value after 2.93635e+06
[1] "Now running gadget for 2011"
[1] "Now inserting gadget data for 2011"
[1] "2011"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2012 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 27894054.2317623"
[1] 27894054
Step is 137
Change fleet "future" - Step: 137 - Area: 1 with 6.47142e+06
Value before 0
Value after 6.47142e+06
Step is 138
Change fleet "future" - Step: 138 - Area: 1 with 9.79081e+06
Value before 0
Value after 9.79081e+06
Step is 139
Change fleet "future" - Step: 139 - Area: 1 with 8.31243e+06
Value before 0
Value after 8.31243e+06
Step is 140
Change fleet "future" - Step: 140 - Area: 1 with 3.31939e+06
Value before 0
Value after 3.31939e+06
[1] "Now running gadget for 2012"
[1] "Now inserting gadget data for 2012"
[1] "2012"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2013 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 27669785.8232061"
[1] 27669786
Step is 141
Change fleet "future" - Step: 141 - Area: 1 with 6.41939e+06
Value before 0
Value after 6.41939e+06
Step is 142
Change fleet "future" - Step: 142 - Area: 1 with 9.71209e+06
Value before 0
Value after 9.71209e+06
Step is 143
Change fleet "future" - Step: 143 - Area: 1 with 8.2456e+06
Value before 0
Value after 8.2456e+06
Step is 144
Change fleet "future" - Step: 144 - Area: 1 with 3.2927e+06
Value before 0
Value after 3.2927e+06
[1] "Now running gadget for 2013"
[1] "Now inserting gadget data for 2013"
[1] "2013"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2014 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 26508079.7113661"
[1] 26508080
Step is 145
Change fleet "future" - Step: 145 - Area: 1 with 6.14987e+06
Value before 0
Value after 6.14987e+06
Step is 146
Change fleet "future" - Step: 146 - Area: 1 with 9.30434e+06
Value before 0
Value after 9.30434e+06
Step is 147
Change fleet "future" - Step: 147 - Area: 1 with 7.89941e+06
Value before 0
Value after 7.89941e+06
Step is 148
Change fleet "future" - Step: 148 - Area: 1 with 3.15446e+06
Value before 0
Value after 3.15446e+06
[1] "Now running gadget for 2014"
[1] "Now inserting gadget data for 2014"
[1] "2014"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2015 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 27006548.5878172"
[1] 27006549
Step is 149
Change fleet "future" - Step: 149 - Area: 1 with 6.26552e+06
Value before 0
Value after 6.26552e+06
Step is 150
Change fleet "future" - Step: 150 - Area: 1 with 9.4793e+06
Value before 0
Value after 9.4793e+06
Step is 151
Change fleet "future" - Step: 151 - Area: 1 with 8.04795e+06
Value before 0
Value after 8.04795e+06
Step is 152
Change fleet "future" - Step: 152 - Area: 1 with 3.21378e+06
Value before 0
Value after 3.21378e+06
[1] "Now running gadget for 2015"
[1] "Now inserting gadget data for 2015"
[1] "2015"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2016 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 26257425.6911154"
[1] 26257426
Step is 153
Change fleet "future" - Step: 153 - Area: 1 with 6.09172e+06
Value before 0
Value after 6.09172e+06
Step is 154
Change fleet "future" - Step: 154 - Area: 1 with 9.21636e+06
Value before 0
Value after 9.21636e+06
Step is 155
Change fleet "future" - Step: 155 - Area: 1 with 7.82471e+06
Value before 0
Value after 7.82471e+06
Step is 156
Change fleet "future" - Step: 156 - Area: 1 with 3.12463e+06
Value before 0
Value after 3.12463e+06
[1] "Now running gadget for 2016"
[1] "Now inserting gadget data for 2016"
[1] "2016"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2017 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 26391350.8324064"
[1] 26391351
Step is 157
Change fleet "future" - Step: 157 - Area: 1 with 6.12279e+06
Value before 0
Value after 6.12279e+06
Step is 158
Change fleet "future" - Step: 158 - Area: 1 with 9.26336e+06
Value before 0
Value after 9.26336e+06
Step is 159
Change fleet "future" - Step: 159 - Area: 1 with 7.86462e+06
Value before 0
Value after 7.86462e+06
Step is 160
Change fleet "future" - Step: 160 - Area: 1 with 3.14057e+06
Value before 0
Value after 3.14057e+06
[1] "Now running gadget for 2017"
[1] "Now inserting gadget data for 2017"
[1] "2017"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2018 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 25546813.1836009"
[1] 25546813
Step is 161
Change fleet "future" - Step: 161 - Area: 1 with 5.92686e+06
Value before 0
Value after 5.92686e+06
Step is 162
Change fleet "future" - Step: 162 - Area: 1 with 8.96693e+06
Value before 0
Value after 8.96693e+06
Step is 163
Change fleet "future" - Step: 163 - Area: 1 with 7.61295e+06
Value before 0
Value after 7.61295e+06
Step is 164
Change fleet "future" - Step: 164 - Area: 1 with 3.04007e+06
Value before 0
Value after 3.04007e+06
[1] "Now running gadget for 2018"
[1] "Now inserting gadget data for 2018"
[1] "2018"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
2019 > [1] "Applying noise before SCAA"
[1] "For stock: had TAC is: 26242509.8428743"
[1] 26242510
Step is 165
Change fleet "future" - Step: 165 - Area: 1 with 6.08826e+06
Value before 0
Value after 6.08826e+06
Step is 166
Change fleet "future" - Step: 166 - Area: 1 with 9.21112e+06
Value before 0
Value after 9.21112e+06
Step is 167
Change fleet "future" - Step: 167 - Area: 1 with 7.82027e+06
Value before 0
Value after 7.82027e+06
Step is 168
Change fleet "future" - Step: 168 - Area: 1 with 3.12286e+06
Value before 0
Value after 3.12286e+06
[1] "Now running gadget for 2019"
[1] "Now inserting gadget data for 2019"
[1] "2019"
[1] "Iter: 1"
[1] "Putting into FLStock"
[1] "Area: 1"
[1] "Catches"
[1] "Landings"
[1] "Discards"
[1] "Stocks"
[1] "Surveys"
> outFileName <- paste0(homeDir, "/results-combination",
+ combIndex, ".rds")
> lck <- lock(paste0(outFileName, ".lock"))
> if (file.exists(outFileName)) {
+ allResults <- readRDS(outFileName)
+ } else {
+ allResults <- list()
+ }
> allResults[[iterIndex]] <- resultFinal
> stk.plot <- plot(FLStocks(stk.om = allResults[[iterIndex]]$mseResults$had$mse@stock,
+ stk.mp = allResults[[iterIndex]]$mseResults$had$sa.resul .... [TRUNCATED]
> stk.plot