RNA-seq Pipelines¶
In [2]:
!date
#v9 for Mac
Thu Mar 6 14:31:03 PST 2014
IPlant Model : Ensembl Genome¶
Genome = Crassostrea_gigas.GCA_000297895.1.21.dna_rm.toplevel.fa
GTF = Crassostrea_gigas.GCA_000297895.1.21.gtf
Tophat
/usr/local2/sheldon/tophat_test.pl --align_reads 'serial' --mate-inner-dist '50' --file_query 'BiGillRNA_GACTAAGA_1.fastq' --file_query 'BiGoRNA_GTGTCTAC_1.fastq' --file_query2 'BiGillRNA_GACTAAGA_2.fastq' --file_query2 'BiGoRNA_GTGTCTAC_2.fastq' --library-type 'fr-unstranded' --min-anchor-length '8' --splice-mismatches '0' --min-intron-length '70' --max-intron-length '50000' --min-isoform-fraction '0.15' --max-multihits '20' --min-segment-intron '50' --user_annotation 'Crassostrea_gigas.GCA_000297895.1.21.gtf' --max-segment-intron '500000' --segment-mismatches '2' --segment-length '20' --num-threads '6' --user_database 'Crassostrea_gigas.GCA_000297895.1.21.dna_rm.toplevel.fa' --b2-sensitive --tophat_version '2.0.9' --bowtie_version '2.1.0' 1>
bedgraph code
/usr/local3/bin/bedtools-iplant-1.00/bedtools.pl genomecov -bg -split -ibam 'BiGoRNA_GTGTCTAC_1.bam' -g 'cgigas_E_genome_bt.tab' -output 'bedtools_genomecov_output'
/usr/local3/bin/bedtools-iplant-1.00/bedtools.pl genomecov -bg -split -ibam 'BiGillRNA_GACTAAGA_1.bam' -g 'cgigas_E_genome_bt.tab' -output 'bedtools_genomecov_output' 1> logs/condor-stdout-0 2>
In [ ]:
#making genome file
In [4]:
cd /Volumes/web/cnidarian/
/Volumes/web/cnidarian
In [6]:
!iget -t 8da35077-89d5-40c7-96cf-660458fec8fa '/iplant/home/sr320/coge_data/TopHat2-PE_BiGill_BiGo-2014-02-02-09-12-25.697/bam/BiGoRNA_GTGTCTAC_1.bam'
In [8]:
!samtools sort /Volumes/web/cnidarian/BiGoRNA_GTGTCTAC_1.bam /Volumes/web/cnidarian/BiGoRNA_GTGTCTAC_1.sorted
[bam_sort_core] merging from 18 files...
In [17]:
!head /Volumes/web/whale/ensembl/ftp.ensemblgenomes.org/pub/release-21/metazoa/fasta/crassostrea_gigas/dna/Crassostrea_gigas.GCA_000297895.1.21.dna_sm.genome.fa
>C12728 dna_sm:supercontig supercontig:GCA_000297895.1:C12728:1:200:1 TTTTTCTTATTTTTATTTGTACCAGTTAATCCTGTGAgccgcttttatgtctctttctgg ccgtttttatgtctctttctgTTGACTTTATTATTCTCTCATTTATGATTTAACATCTCA TATGAATTATTATGTGTATCTTGCATGGGATATTTTGCCACTTCGTGCCCATAAAAATCA ACACTTGTCTTTCGGTGTAT >C12722 dna_sm:supercontig supercontig:GCA_000297895.1:C12722:1:200:1 TAGGGACAGTGTCTATTGCATTAAGGTGAGTGACTGTTTGGGGTTAAACTTAAACAGGTA TGGATAGATTGAGTGTGTGAACATCCCTGCTCTATCTAATCTACGTGTTTTCTAACCTTT GATACAAAGTGTGCGGTCATTCCTGCCCTGTATCGCATTAATACAAGTGTGCAGTCATAC CTGCTTGTATTGGTGGTGGT
In [13]:
!perl -e '$count=0; $len=0; while(<>) {s/\r?\n//; s/\t/ /g; if (s/^>//) { if ($. != 1) {print "\n"} s/ |$/\t/; $count++; $_ .= "\t";} else {s/ //g; $len += length($_)} print $_;} print "\n"; warn "\nConverted $count FASTA records in $. lines to tabular format\nTotal sequence length: $len\n\n";' /Volumes/web/whale/ensembl/ftp.ensemblgenomes.org/pub/release-21/metazoa/fasta/crassostrea_gigas/dna/Crassostrea_gigas.GCA_000297895.1.21.dna_sm.genome.fa > /Volumes/web/cnidarian/cgigasgenome1.tab
Converted 7658 FASTA records in 9306685 lines to tabular format Total sequence length: 557717710
In [14]:
!perl -e '$col = 2;' -e 'while (<>) { s/\r?\n//; @F = split /\t/, $_; $len = length($F[$col]); print "$_\t$len\n" } warn "\nAdded column with length of column $col for $. lines.\n\n";' /Volumes/web/cnidarian/cgigasgenome1.tab > /Volumes/web/cnidarian/cgigasgenome2.tab
Added column with length of column 2 for 7658 lines.
In [24]:
!awk '{ print $1,$5 }' /Volumes/web/cnidarian/cgigasgenome2.tab > /Volumes/web/cnidarian/cgigasgenome3.tab
In [26]:
!tail /Volumes/web/cnidarian/cgigasgenome3.tab
scaffold77 1619719 scaffold337 1638316 scaffold86 1697160 scaffold1532 1715538 scaffold419 1725835 scaffold102 1727112 scaffold1024 1774716 scaffold150 1854615 scaffold1009 1861391 scaffold22 1964558
In [31]:
pwd
Out[31]:
u'/Volumes/web/cnidarian'
In [32]:
!head /Volumes/web/cnidarian/cgigasgenome3.tab
C12728 200 C12722 200 C12706 200 C12718 200 C12732 200 C12726 200 C12708 200 C12730 200 C12724 200 C12734 200
In [44]:
!/Volumes/Bay3/Software/bg/bedGraphToBigWig /Volumes/web/cnidarian/BiGoRNA_bg1_sorted.bedgraph /Volumes/web/cnidarian/cgigasgenome3.tab out.bw
Expecting 2 words line 4252 of /Volumes/web/cnidarian/cgigasgenome3.tab got 1
In [38]:
!head /Volumes/web/cnidarian/BiGoRNA_bg1.bedgraph
C12722 142 192 1 C12738 40 90 2 C12738 94 144 13 C12738 149 199 3 C12748 98 113 1 C12748 113 163 2 C12748 163 198 1 C12758 28 37 1 C12758 37 38 2 C12758 38 87 3
In [40]:
!sort -k1,1 -k2,2n /Volumes/web/cnidarian/BiGoRNA_bg1.bedgraph > /Volumes/web/cnidarian/BiGoRNA_bg1_sorted.bedgraph
In [37]:
!/Volumes/Bay3/Software/bg/bedGraphToBigWig
bedGraphToBigWig v 4 - Convert a bedGraph file to bigWig format.
usage:
bedGraphToBigWig in.bedGraph chrom.sizes out.bw
where in.bedGraph is a four column file in the format:
<chrom> <start> <end> <value>
and chrom.sizes is two column: <chromosome name> <size in bases>
and out.bw is the output indexed big wig file.
Use the script: fetchChromSizes to obtain the actual chrom.sizes information
from UCSC, please do not make up a chrom sizes from your own information.
The input bedGraph file must be sorted, use the unix sort command:
sort -k1,1 -k2,2n unsorted.bedGraph > sorted.bedGraph
options:
-blockSize=N - Number of items to bundle in r-tree. Default 256
-itemsPerSlot=N - Number of data points bundled at lowest level. Default 1024
-unc - If set, do not use compression.
Version 9¶
In [3]:
#make genome file
In [5]:
!head -2 /Volumes/web/cnidarian/oyster.v9.fa
>scaffold360 TATTCATATATCATTGAGAATGACAGTTTAAAACAGGATTTTTAATTGTGTTTAATAGGCGACCAACATTTAAGTGTCATTTGTTGAGTTATAAGCGAGTTAAAAAGCTTGTAGTTCTTCGCTATGGAAACAAAACTTTACATTTTGTTTACATTTCAGTTTTAGACCTCAAATGAATGTTTTTATCGTTAGGAACTGTTTATTTATGCTTTAAATTGATAAGAAGATTGACAAATCAGCTTGAAAAAGATTTTTTACTGGTGTATTGAACCCAGATGTA
In [6]:
!perl -e '$count=0; $len=0; while(<>) {s/\r?\n//; s/\t/ /g; if (s/^>//) { if ($. != 1) {print "\n"} s/ |$/\t/; $count++; $_ .= "\t";} else {s/ //g; $len += length($_)} print $_;} print "\n"; warn "\nConverted $count FASTA records in $. lines to tabular format\nTotal sequence length: $len\n\n";' /Volumes/web/cnidarian/oyster.v9.fa > /Volumes/web/cnidarian/cgigas_v9_genome01.tab
Converted 11969 FASTA records in 23938 lines to tabular format Total sequence length: 558601156
In [8]:
!head -1 /Volumes/web/cnidarian/cgigas_v9_genome01.tab
scaffold360 TATTCATATATCATTGAGAATGACAGTTTAAAACAGGATTTTTAATTGTGTTTAATAGGCGACCAACATTTAAGTGTCATTTGTTGAGTTATAAGCGAGTTAAAAAGCTTGTAGTTCTTCGCTATGGAAACAAAACTTTACATTTTGTTTACATTTCAGTTTTAGACCTCAAATGAATGTTTTTATCGTTAGGAACTGTTTATTTATGCTTTAAATTGATAAGAAGATTGACAAATCAGCTTGAAAAAGATTTTTTACTGGTGTATTGAACCCAGATGTA
In [9]:
!perl -e '$col = 2;' -e 'while (<>) { s/\r?\n//; @F = split /\t/, $_; $len = length($F[$col]); print "$_\t$len\n" } warn "\nAdded column with length of column $col for $. lines.\n\n";' /Volumes/web/cnidarian/cgigas_v9_genome01.tab > /Volumes/web/cnidarian/cgigas_v9_genome02.tab
Added column with length of column 2 for 11969 lines.
In [10]:
!head -2 /Volumes/web/cnidarian/cgigas_v9_genome02.tab
scaffold360 TATTCATATATCATTGAGAATGACAGTTTAAAACAGGATTTTTAATTGTGTTTAATAGGCGACCAACATTTAAGTGTCATTTGTTGAGTTATAAGCGAGTTAAAAAGCTTGTAGTTCTTCGCTATGGAAACAAAACTTTACATTTTGTTTACATTTCAGTTTTAGACCTCAAATGAATGTTTTTATCGTTAGGAACTGTTTATTTATGCTTTAAATTGATAAGAAGATTGACAAATCAGCTTGAAAAAGATTTTTTACTGGTGTATTGAACCCAGATGTA 280 scaffold18356 TTAAACTGGTACAACAGTATATCCAAGAGAAAAAGGACTTTATAAACAATTTAGAACAACATTGTGGGTCGGATCGGAATTCAAGAACACAGGATCCATTGATGGCTTCTACTATGAAGGGCGATACTACCGCTTGGGGTGACGTCAAATACACTCCGTCATCGACAAAATCTCCTGGATTGTATCCATTACAGGAATTGAAGAAATAACTTTCAATGTAAACAATTTACAAAGATATACATATCTTACGTGAATATCTGGCATGGAAACAACACCTACATGATAGAATAAGACAATATTTCCTACGATACATCCATGGGACATGAAGAAAGTGAAACAGTGTATATCCATATTTAAATTATTATTATAACCGTGTAATCCAAAATGAATTTTATTCCTTCTCATCAGTAAGTACACTGAAAATTGACTACTAAGAAGAGGAAAACACAGAAACGCTAGTTACAACCGATGACCGTTATGAACATAATGCGATTATTTCAGTGAACCGTGTATTAGTGATTTCCTATGTAGGAAGGATTAATATAATTTGCTTCCTATTAGTGTAAT 567
In [14]:
!awk '{ print $1,$3 }' /Volumes/web/cnidarian/cgigas_v9_genome02.tab > /Volumes/web/cnidarian/cgigas_v9_genome03.tab
In [15]:
!head -2 /Volumes/web/cnidarian/cgigas_v9_genome03.tab
scaffold360 280 scaffold18356 567
Running RNAseq2bedgraph on iplant with G3. Sequenced reads were generated from the female gonad of an individual of "G3" family in Crassostrea gigas.
data check in IGV¶
In [18]:
pwd
Out[18]:
u'/Volumes/web/cnidarian'
In [21]:
!iget -h
Usage: iget [-fIKPQrUvVT] [-n replNumber] [-N numThreads] [-X restartFile]
[-R resource] [--lfrestart lfRestartFile] [--retries count] [--purgec]
[--rlock] srcDataObj|srcCollection ... destLocalFile|destLocalDir
Usage : iget [-fIKPQUvVT] [-n replNumber] [-N numThreads] [-X restartFile]
[-R resource] [--lfrestart lfRestartFile] [--retries count] [--purgec]
[--rlock] srcDataObj|srcCollection
Usage : iget [-fIKPQUvVT] [-n replNumber] [-N numThreads] [-X restartFile]
[-R resource] [--lfrestart lfRestartFile] [--retries count] [--purgec]
[--rlock] srcDataObj ... -
Get data-objects or collections from irods space, either to the specified
local area or to the current working directory.
If the destLocalFile is '-', the files read from the server will be
written to the standard output (stdout). Similar to the UNIX 'cat'
command, multiple source files can be specified.
The -X option specifies that the restart option is on and the operation
is restartable. The restartFile input specifies a local file that contains
the restart info. If the restartFile does not exist, it will be created
and used for recording subsequent restart info. If it exists and is not
empty, the restart info contained in this file will be used to restart
the operation. Note that the operation is not restarted automatically
when it failed. Another iget -X run must be made to continue from where
it left off using the restart info. But the -X option can be used in
conjunction with the --retries option to automatically restart the operation
in case of failure. Also note that the restart operation only works for
uploading directories and the path input must be identical to the one
that generated the restart file
The --lfrestart option specifies that the large file restart option is on
and the lfRestartFile input specifies a local file that contains the restart
info. Currently, only files larger than 32 Mbytes will be restarted.
The --lfrestart option can be used together with the -X option to do large
file transfer restart as part of the overall collection download restart.
The -Q option specifies the use of the RBUDP transfer mechanism which uses
the UDP protocol for data transfer. The UDP protocol is very efficient
if the network is very robust with few packet losses. Two environment
variables - rbudpSendRate and rbudpPackSize are used to tune the RBUDP
data transfer. rbudpSendRate is used to throttle the send rate in
kbits/sec. The default rbudpSendRate is 600,000. rbudpPackSize is used
to set the packet size. The dafault rbudpPackSize is 8192. The -V option
can be used to show the loss rate of the transfer. If the lost rate is
more than a few %, the sendrate should be reduced.
The -T option will renew the socket connection between the client and
server after 10 minutes of connection. This gets around the problem of
sockets getting timed out by the firewall as reported by some users.
Options are:
-f force - write local files even it they exist already (overwrite them)
-I redirect connection - redirect the connection to connect directly
to the best (determiined by the first 10 data objects in the input
collection) resource server.
-K verify the checksum
-n replNumber - retrieve the copy with the specified replica number
-N numThreads - the number of thread to use for the transfer. A value of
0 means no threading. By default (-N option not used) the server
decides the number of threads to use.
--purgec Purge the staged cache copy after downloading a COMPOUND object
-P output the progress of the download.
-r recursive - retrieve subcollections
-R resource - the preferred resource
-T renew socket connection after 10 minutes
-Q use RBUDP (datagram) protocol for the data transfer
-v verbose
-V Very verbose
restartFile input specifies a local file that contains the restart info.
-X restartFile - specifies that the restart option is on and the
restartFile input specifies a local file that contains the restart info.
--retries count - Retry the iget in case of error. The 'count' input
specifies the number of times to retry. It must be used with the
-X option
--lfrestart lfRestartFile - specifies that the large file restart option is
on and the lfRestartFile input specifies a local file that contains
the restart info.
-t ticket - ticket (string) to use for ticket-based access.
--rlock - use advisory read lock for the download
-h this help
iRODS Version 3.2 October 2012 iget
In [26]:
!iget '/iplant/home/sr320/Cgigas_v9/Zhang/RNAseq2bedgraph_G3-2014-03-06-16-26-41.026/bedtools_genomecov_output' G3.bedgraph
In [27]:
!head /Users/sr320/Desktop/zG3_v9.bed
C1 4 6 1 C1 6 94 2 C1 94 96 1 C10015 21 23 5 C10015 23 26 18 C10015 26 28 19 C10015 28 39 24 C10015 39 43 25 C10015 43 61 28 C10015 61 111 31
Need to add a few columns? to get COGE to take it
In [28]:
!awk '{ print $1,$2,$3,"tophat",$4,"+" }' /Users/sr320/Desktop/zG3_v9.bed > /Volumes/web/cnidarian/zG3_v9.bed
In [29]:
!head /Volumes/web/cnidarian/zG3_v9.bed
C1 4 6 tophat 1 + C1 6 94 tophat 2 + C1 94 96 tophat 1 + C10015 21 23 tophat 5 + C10015 23 26 tophat 18 + C10015 26 28 tophat 19 + C10015 28 39 tophat 24 + C10015 39 43 tophat 25 + C10015 43 61 tophat 28 + C10015 61 111 tophat 31 +
Still haveing issues.
Again - streamline with Fgo http://goo.gl/jBS0mS¶
Step 1. unzip gz fastq files in Iplant
Step2. run RNASeq2Bedgraph in IPlant
Step3. rename using icommands
In [64]:
bgdir="/iplant/home/sr320/Cgigas_v9/Zhang/bgraph"
In [88]:
!ils {bgdir}
/iplant/home/sr320/Cgigas_v9/Zhang/bgraph: C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Fgo-2014-03-07-10-07-12.617 C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_G3-2014-03-06-16-26-41.026
In [80]:
folder="RNAseq2bedgraph_Fgo-2014-03-07-10-07-12.617"
id="Fgo"
In [91]:
!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}
!imv accepted_hits.bam z{id}_tophat.bam
!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph
!cd /Volumes/web/cnidarian/
!iget z{id}_th_genomecov.bedgraph
!iget z{id}_tophat.bam
!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes
!iput z{id}_th_genomecov.bedgraph.tdf
Mgo¶
In [1]:
bgdir="/iplant/home/sr320/Cgigas_v9/Zhang/bgraph"
!ils {bgdir}
/iplant/home/sr320/Cgigas_v9/Zhang/bgraph: C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Fgo-2014-03-07-10-07-12.617 C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_G3-2014-03-06-16-26-41.026 C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Mgo1.3-2014-03-07-14-06-07.430 C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Mgo-2014-03-07-14-03-33.677
In [5]:
folder="RNAseq2bedgraph_Mgo-2014-03-07-14-03-33.677"
id="Mgo"
In [6]:
!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}
!imv accepted_hits.bam z{id}_tophat.bam
!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph
!cd /Volumes/web/cnidarian/
!iget z{id}_th_genomecov.bedgraph
!iget z{id}_tophat.bam
!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes
!iput z{id}_th_genomecov.bedgraph.tdf
ERROR: getUtil: get error for ./zMgo_th_genomecov.bedgraph status = -312000 OVERWRITE_WITHOUT_FORCE_FLAG ERROR: getUtil: get error for ./zMgo_tophat.bam status = -312000 OVERWRITE_WITHOUT_FORCE_FLAG INFO [2014-03-08 06:12:16,923] [IgvTools.java:613] [main] toTDF. File = zMgo_th_genomecov.bedgraph toTDF. File = zMgo_th_genomecov.bedgraph INFO [2014-03-08 06:12:16,927] [IgvTools.java:614] [main] Max zoom = 7 Max zoom = 7 INFO [2014-03-08 06:12:16,927] [IgvTools.java:622] [main] Window functions: mean Window functions: mean INFO [2014-03-08 06:12:16,956] [GenomeManager.java:130] [main] Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes INFO [2014-03-08 06:12:17,328] [DirectoryManager.java:149] [main] IGV Directory: /Users/sr320/igv IGV Directory: /Users/sr320/igv INFO [2014-03-08 06:12:17,361] [GenomeManager.java:174] [main] Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03 Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03 INFO [2014-03-08 06:12:17,481] [Preprocessor.java:241] [main] Processing chromosome C1 Processing chromosome C1 INFO [2014-03-08 06:12:17,715] [Preprocessor.java:241] [main] Processing chromosome C10015 Processing chromosome C10015 INFO [2014-03-08 06:12:18,020] [Preprocessor.java:241] [main] Processing chromosome C10033 Processing chromosome C10033 INFO [2014-03-08 06:12:18,269] [Preprocessor.java:241] [main] Processing chromosome C10043 Processing chromosome C10043 INFO [2014-03-08 06:12:18,296] [Preprocessor.java:241] [main] Processing chromosome C10047 Processing chromosome C10047 INFO [2014-03-08 06:12:18,464] [Preprocessor.java:241] [main] Processing chromosome C10049 Processing chromosome C10049 INFO [2014-03-08 06:12:18,491] [Preprocessor.java:241] [main] Processing chromosome C10057 Processing chromosome C10057 INFO [2014-03-08 06:12:18,538] [Preprocessor.java:241] [main] Processing chromosome C1007 Processing chromosome C1007 INFO [2014-03-08 06:12:18,721] [Preprocessor.java:241] [main] Processing chromosome C10089 Processing chromosome C10089 INFO [2014-03-08 06:12:18,776] [Preprocessor.java:241] [main] Processing chromosome C10091 Processing chromosome C10091 INFO [2014-03-08 06:12:18,871] [Preprocessor.java:241] [main] Processing chromosome C10097 Processing chromosome C10097 INFO [2014-03-08 06:12:18,940] [Preprocessor.java:241] [main] Processing chromosome C10109 Processing chromosome C10109 INFO [2014-03-08 06:12:19,091] [Preprocessor.java:241] [main] Processing chromosome C10131 Processing chromosome C10131 INFO [2014-03-08 06:12:19,123] [Preprocessor.java:241] [main] Processing chromosome C10157 Processing chromosome C10157 INFO [2014-03-08 06:12:19,228] [Preprocessor.java:241] [main] Processing chromosome C10163 Processing chromosome C10163 INFO [2014-03-08 06:12:19,354] [Preprocessor.java:241] [main] Processing chromosome C10171 Processing chromosome C10171 INFO [2014-03-08 06:12:19,443] [Preprocessor.java:241] [main] Processing chromosome C10183 Processing chromosome C10183 INFO [2014-03-08 06:12:19,512] [Preprocessor.java:241] [main] Processing chromosome C10189 Processing chromosome C10189 INFO [2014-03-08 06:12:19,572] [Preprocessor.java:241] [main] Processing chromosome C10241 Processing chromosome C10241 INFO [2014-03-08 06:12:19,640] [Preprocessor.java:241] [main] Processing chromosome C10261 Processing chromosome C10261 INFO [2014-03-08 06:12:19,709] [Preprocessor.java:241] [main] Processing chromosome C10263 Processing chromosome C10263 INFO [2014-03-08 06:12:19,816] [Preprocessor.java:241] [main] Processing chromosome C10271 Processing chromosome C10271 INFO [2014-03-08 06:12:19,979] [Preprocessor.java:241] [main] Processing chromosome C1033 Processing chromosome C1033 INFO [2014-03-08 06:12:20,019] [Preprocessor.java:241] [main] Processing chromosome C10345 Processing chromosome C10345 INFO [2014-03-08 06:12:20,116] [Preprocessor.java:241] [main] Processing chromosome C10353 Processing chromosome C10353 INFO [2014-03-08 06:12:20,137] [Preprocessor.java:241] [main] Processing chromosome C10355 Processing chromosome C10355 INFO [2014-03-08 06:12:20,211] [Preprocessor.java:241] [main] Processing chromosome C10403 Processing chromosome C10403 INFO [2014-03-08 06:12:20,233] [Preprocessor.java:241] [main] Processing chromosome C10405 Processing chromosome C10405 INFO [2014-03-08 06:12:20,327] [Preprocessor.java:241] [main] Processing chromosome C10409 Processing chromosome C10409 INFO [2014-03-08 06:12:20,474] [Preprocessor.java:241] [main] Processing chromosome C10421 Processing chromosome C10421 INFO [2014-03-08 06:12:20,495] [Preprocessor.java:241] [main] Processing chromosome C10425 Processing chromosome C10425 INFO [2014-03-08 06:12:20,570] [Preprocessor.java:241] [main] Processing chromosome C10431 Processing chromosome C10431 INFO [2014-03-08 06:12:20,646] [Preprocessor.java:241] [main] Processing chromosome C10437 Processing chromosome C10437 INFO [2014-03-08 06:12:20,665] [Preprocessor.java:241] [main] Processing chromosome C10459 Processing chromosome C10459 INFO [2014-03-08 06:12:20,708] [Preprocessor.java:241] [main] Processing chromosome C1047 Processing chromosome C1047 INFO [2014-03-08 06:12:20,764] [Preprocessor.java:241] [main] Processing chromosome C10477 Processing chromosome C10477 INFO [2014-03-08 06:12:20,895] [Preprocessor.java:241] [main] Processing chromosome C10487 Processing chromosome C10487 INFO [2014-03-08 06:12:20,941] [Preprocessor.java:241] [main] Processing chromosome C10495 Processing chromosome C10495 INFO [2014-03-08 06:12:21,171] [Preprocessor.java:241] [main] Processing chromosome C10529 Processing chromosome C10529 INFO [2014-03-08 06:12:21,189] [Preprocessor.java:241] [main] Processing chromosome C10535 Processing chromosome C10535 INFO [2014-03-08 06:12:21,257] [Preprocessor.java:241] [main] Processing chromosome C10549 Processing chromosome C10549 INFO [2014-03-08 06:12:21,297] [Preprocessor.java:241] [main] Processing chromosome C1057 Processing chromosome C1057 INFO [2014-03-08 06:12:21,357] [Preprocessor.java:241] [main] Processing chromosome C10575 Processing chromosome C10575 INFO [2014-03-08 06:12:21,392] [Preprocessor.java:241] [main] Processing chromosome C10579 Processing chromosome C10579 INFO [2014-03-08 06:12:21,430] [Preprocessor.java:241] [main] Processing chromosome C10585 Processing chromosome C10585 INFO [2014-03-08 06:12:21,466] [Preprocessor.java:241] [main] Processing chromosome C10587 Processing chromosome C10587 INFO [2014-03-08 06:12:21,485] [Preprocessor.java:241] [main] Processing chromosome C10591 Processing chromosome C10591 INFO [2014-03-08 06:12:21,518] [Preprocessor.java:241] [main] Processing chromosome C10599 Processing chromosome C10599 INFO [2014-03-08 06:12:21,552] [Preprocessor.java:241] [main] Processing chromosome C10607 Processing chromosome C10607 INFO [2014-03-08 06:12:21,625] [Preprocessor.java:241] [main] Processing chromosome C10609 Processing chromosome C10609 INFO [2014-03-08 06:12:21,675] [Preprocessor.java:241] [main] Processing chromosome C10613 Processing chromosome C10613 INFO [2014-03-08 06:12:21,693] [Preprocessor.java:241] [main] Processing chromosome C10619 Processing chromosome C10619 INFO [2014-03-08 06:12:21,762] [Preprocessor.java:241] [main] Processing chromosome C10621 Processing chromosome C10621 INFO [2014-03-08 06:12:21,816] [Preprocessor.java:241] [main] Processing chromosome C10637 Processing chromosome C10637 INFO [2014-03-08 06:12:21,836] [Preprocessor.java:241] [main] Processing chromosome C10655 Processing chromosome C10655 INFO [2014-03-08 06:12:21,923] [Preprocessor.java:241] [main] Processing chromosome C10677 Processing chromosome C10677 INFO [2014-03-08 06:12:21,989] [Preprocessor.java:241] [main] Processing chromosome C10679 Processing chromosome C10679 INFO [2014-03-08 06:12:22,011] [Preprocessor.java:241] [main] Processing chromosome C10687 Processing chromosome C10687 INFO [2014-03-08 06:12:22,048] [Preprocessor.java:241] [main] Processing chromosome C10693 Processing chromosome C10693 INFO [2014-03-08 06:12:22,163] [Preprocessor.java:241] [main] Processing chromosome C10695 Processing chromosome C10695 INFO [2014-03-08 06:12:22,215] [Preprocessor.java:241] [main] Processing chromosome C10699 Processing chromosome C10699 INFO [2014-03-08 06:12:22,328] [Preprocessor.java:241] [main] Processing chromosome C10701 Processing chromosome C10701 INFO [2014-03-08 06:12:22,338] [Preprocessor.java:241] [main] Processing chromosome C10741 Processing chromosome C10741 INFO [2014-03-08 06:12:22,362] [Preprocessor.java:241] [main] Processing chromosome C10759 Processing chromosome C10759 INFO [2014-03-08 06:12:22,395] [Preprocessor.java:241] [main] Processing chromosome C10765 Processing chromosome C10765 INFO [2014-03-08 06:12:22,468] [Preprocessor.java:241] [main] Processing chromosome C10775 Processing chromosome C10775 INFO [2014-03-08 06:12:22,522] [Preprocessor.java:241] [main] Processing chromosome C10803 Processing chromosome C10803 INFO [2014-03-08 06:12:22,543] [Preprocessor.java:241] [main] Processing chromosome C1081 Processing chromosome C1081 INFO [2014-03-08 06:12:22,622] [Preprocessor.java:241] [main] Processing chromosome C10811 Processing chromosome C10811 INFO [2014-03-08 06:12:22,726] [Preprocessor.java:241] [main] Processing chromosome C10819 Processing chromosome C10819 INFO [2014-03-08 06:12:22,796] [Preprocessor.java:241] [main] Processing chromosome C10821 Processing chromosome C10821 INFO [2014-03-08 06:12:22,845] [Preprocessor.java:241] [main] Processing chromosome C10829 Processing chromosome C10829 INFO [2014-03-08 06:12:22,903] [Preprocessor.java:241] [main] Processing chromosome C10833 Processing chromosome C10833 INFO [2014-03-08 06:12:22,972] [Preprocessor.java:241] [main] Processing chromosome C10837 Processing chromosome C10837 INFO [2014-03-08 06:12:22,994] [Preprocessor.java:241] [main] Processing chromosome C10871 Processing chromosome C10871 INFO [2014-03-08 06:12:23,067] [Preprocessor.java:241] [main] Processing chromosome C10881 Processing chromosome C10881 INFO [2014-03-08 06:12:23,089] [Preprocessor.java:241] [main] Processing chromosome C10897 Processing chromosome C10897 INFO [2014-03-08 06:12:23,122] [Preprocessor.java:241] [main] Processing chromosome C10901 Processing chromosome C10901 INFO [2014-03-08 06:12:23,192] [Preprocessor.java:241] [main] Processing chromosome C10905 Processing chromosome C10905 INFO [2014-03-08 06:12:23,239] [Preprocessor.java:241] [main] Processing chromosome C10941 Processing chromosome C10941 INFO [2014-03-08 06:12:23,261] [Preprocessor.java:241] [main] Processing chromosome C10947 Processing chromosome C10947 INFO [2014-03-08 06:12:23,327] [Preprocessor.java:241] [main] Processing chromosome C1095 Processing chromosome C1095 INFO [2014-03-08 06:12:23,360] [Preprocessor.java:241] [main] Processing chromosome C10955 Processing chromosome C10955 INFO [2014-03-08 06:12:23,428] [Preprocessor.java:241] [main] Processing chromosome C10959 Processing chromosome C10959 INFO [2014-03-08 06:12:23,484] [Preprocessor.java:241] [main] Processing chromosome C10961 Processing chromosome C10961 INFO [2014-03-08 06:12:23,553] [Preprocessor.java:241] [main] Processing chromosome C10963 Processing chromosome C10963 INFO [2014-03-08 06:12:23,613] [Preprocessor.java:241] [main] Processing chromosome C10967 Processing chromosome C10967 INFO [2014-03-08 06:12:23,651] [Preprocessor.java:241] [main] Processing chromosome C10999 Processing chromosome C10999 INFO [2014-03-08 06:12:23,700] [Preprocessor.java:241] [main] Processing chromosome C11001 Processing chromosome C11001 INFO [2014-03-08 06:12:23,758] [Preprocessor.java:241] [main] Processing chromosome C11027 Processing chromosome C11027 INFO [2014-03-08 06:12:23,811] [Preprocessor.java:241] [main] Processing chromosome C11031 Processing chromosome C11031 INFO [2014-03-08 06:12:23,847] [Preprocessor.java:241] [main] Processing chromosome C11057 Processing chromosome C11057 INFO [2014-03-08 06:12:23,888] [Preprocessor.java:241] [main] Processing chromosome C11061 Processing chromosome C11061 INFO [2014-03-08 06:12:23,942] [Preprocessor.java:241] [main] Processing chromosome C11065 Processing chromosome C11065 INFO [2014-03-08 06:12:23,982] [Preprocessor.java:241] [main] Processing chromosome C11081 Processing chromosome C11081 INFO [2014-03-08 06:12:24,027] [Preprocessor.java:241] [main] Processing chromosome C11083 Processing chromosome C11083 INFO [2014-03-08 06:12:24,074] [Preprocessor.java:241] [main] Processing chromosome C11085 Processing chromosome C11085 INFO [2014-03-08 06:12:24,125] [Preprocessor.java:241] [main] Processing chromosome C11095 Processing chromosome C11095 INFO [2014-03-08 06:12:24,144] [Preprocessor.java:241] [main] Processing chromosome C11125 Processing chromosome C11125 INFO [2014-03-08 06:12:24,194] [Preprocessor.java:241] [main] Processing chromosome C1113 Processing chromosome C1113 INFO [2014-03-08 06:12:24,232] [Preprocessor.java:241] [main] Processing chromosome C11133 Processing chromosome C11133 INFO [2014-03-08 06:12:24,292] [Preprocessor.java:241] [main] Processing chromosome C11143 Processing chromosome C11143 INFO [2014-03-08 06:12:24,316] [Preprocessor.java:241] [main] Processing chromosome C11175 Processing chromosome C11175 INFO [2014-03-08 06:12:24,372] [Preprocessor.java:241] [main] Processing chromosome C11177 Processing chromosome C11177 INFO [2014-03-08 06:12:24,392] [Preprocessor.java:241] [main] Processing chromosome C11191 Processing chromosome C11191 INFO [2014-03-08 06:12:24,454] [Preprocessor.java:241] [main] Processing chromosome C11193 Processing chromosome C11193 INFO [2014-03-08 06:12:24,474] [Preprocessor.java:241] [main] Processing chromosome C11207 Processing chromosome C11207 INFO [2014-03-08 06:12:24,533] [Preprocessor.java:241] [main] Processing chromosome C11211 Processing chromosome C11211 INFO [2014-03-08 06:12:24,565] [Preprocessor.java:241] [main] Processing chromosome C11215 Processing chromosome C11215 INFO [2014-03-08 06:12:24,631] [Preprocessor.java:241] [main] Processing chromosome C11223 Processing chromosome C11223 INFO [2014-03-08 06:12:24,657] [Preprocessor.java:241] [main] Processing chromosome C11227 Processing chromosome C11227 INFO [2014-03-08 06:12:24,721] [Preprocessor.java:241] [main] Processing chromosome C1123 Processing chromosome C1123 INFO [2014-03-08 06:12:24,777] [Preprocessor.java:241] [main] Processing chromosome C11270 Processing chromosome C11270 INFO [2014-03-08 06:12:24,796] [Preprocessor.java:241] [main] Processing chromosome C11278 Processing chromosome C11278 INFO [2014-03-08 06:12:24,849] [Preprocessor.java:241] [main] Processing chromosome C11282 Processing chromosome C11282 INFO [2014-03-08 06:12:24,873] [Preprocessor.java:241] [main] Processing chromosome C11288 Processing chromosome C11288 INFO [2014-03-08 06:12:24,926] [Preprocessor.java:241] [main] Processing chromosome C11292 Processing chromosome C11292 INFO [2014-03-08 06:12:24,964] [Preprocessor.java:241] [main] Processing chromosome C11302 Processing chromosome C11302 INFO [2014-03-08 06:12:24,987] [Preprocessor.java:241] [main] Processing chromosome C11304 Processing chromosome C11304 INFO [2014-03-08 06:12:25,075] [Preprocessor.java:241] [main] Processing chromosome C11350 Processing chromosome C11350 INFO [2014-03-08 06:12:25,146] [Preprocessor.java:241] [main] Processing chromosome C11352 Processing chromosome C11352 INFO [2014-03-08 06:12:25,211] [Preprocessor.java:241] [main] Processing chromosome C11358 Processing chromosome C11358 INFO [2014-03-08 06:12:25,273] [Preprocessor.java:241] [main] Processing chromosome C11366 Processing chromosome C11366 INFO [2014-03-08 06:12:25,293] [Preprocessor.java:241] [main] Processing chromosome C11372 Processing chromosome C11372 INFO [2014-03-08 06:12:25,367] [Preprocessor.java:241] [main] Processing chromosome C11400 Processing chromosome C11400 INFO [2014-03-08 06:12:25,429] [Preprocessor.java:241] [main] Processing chromosome C11402 Processing chromosome C11402 INFO [2014-03-08 06:12:25,481] [Preprocessor.java:241] [main] Processing chromosome C11408 Processing chromosome C11408 INFO [2014-03-08 06:12:25,524] [Preprocessor.java:241] [main] Processing chromosome C11410 Processing chromosome C11410 INFO [2014-03-08 06:12:25,542] [Preprocessor.java:241] [main] Processing chromosome C11416 Processing chromosome C11416 INFO [2014-03-08 06:12:25,592] [Preprocessor.java:241] [main] Processing chromosome C11422 Processing chromosome C11422 INFO [2014-03-08 06:12:25,645] [Preprocessor.java:241] [main] Processing chromosome C11428 Processing chromosome C11428 INFO [2014-03-08 06:12:25,686] [Preprocessor.java:241] [main] Processing chromosome C11468 Processing chromosome C11468 INFO [2014-03-08 06:12:25,720] [Preprocessor.java:241] [main] Processing chromosome C11470 Processing chromosome C11470 INFO [2014-03-08 06:12:25,739] [Preprocessor.java:241] [main] Processing chromosome C11474 Processing chromosome C11474 INFO [2014-03-08 06:12:25,772] [Preprocessor.java:241] [main] Processing chromosome C11476 Processing chromosome C11476 INFO [2014-03-08 06:12:25,803] [Preprocessor.java:241] [main] Processing chromosome C11478 Processing chromosome C11478 INFO [2014-03-08 06:12:25,834] [Preprocessor.java:241] [main] Processing chromosome C11484 Processing chromosome C11484 INFO [2014-03-08 06:12:25,877] [Preprocessor.java:241] [main] Processing chromosome C11488 Processing chromosome C11488 INFO [2014-03-08 06:12:25,896] [Preprocessor.java:241] [main] Processing chromosome C11490 Processing chromosome C11490 INFO [2014-03-08 06:12:25,940] [Preprocessor.java:241] [main] Processing chromosome C11496 Processing chromosome C11496 INFO [2014-03-08 06:12:25,998] [Preprocessor.java:241] [main] Processing chromosome C11500 Processing chromosome C11500 INFO [2014-03-08 06:12:26,017] [Preprocessor.java:241] [main] Processing chromosome C1151 Processing chromosome C1151 INFO [2014-03-08 06:12:26,061] [Preprocessor.java:241] [main] Processing chromosome C11532 Processing chromosome C11532 INFO [2014-03-08 06:12:26,100] [Preprocessor.java:241] [main] Processing chromosome C11540 Processing chromosome C11540 INFO [2014-03-08 06:12:26,131] [Preprocessor.java:241] [main] Processing chromosome C1155 Processing chromosome C1155 INFO [2014-03-08 06:12:26,175] [Preprocessor.java:241] [main] Processing chromosome C11552 Processing chromosome C11552 INFO [2014-03-08 06:12:26,309] [Preprocessor.java:241] [main] Processing chromosome C11558 Processing chromosome C11558 INFO [2014-03-08 06:12:26,360] [Preprocessor.java:241] [main] Processing chromosome C11560 Processing chromosome C11560 INFO [2014-03-08 06:12:26,378] [Preprocessor.java:241] [main] Processing chromosome C11568 Processing chromosome C11568 INFO [2014-03-08 06:12:26,432] [Preprocessor.java:241] [main] Processing chromosome C1157 Processing chromosome C1157 INFO [2014-03-08 06:12:26,465] [Preprocessor.java:241] [main] Processing chromosome C11570 Processing chromosome C11570 INFO [2014-03-08 06:12:26,505] [Preprocessor.java:241] [main] Processing chromosome C11572 Processing chromosome C11572 INFO [2014-03-08 06:12:26,536] [Preprocessor.java:241] [main] Processing chromosome C11574 Processing chromosome C11574 INFO [2014-03-08 06:12:26,585] [Preprocessor.java:241] [main] Processing chromosome C1159 Processing chromosome C1159 INFO [2014-03-08 06:12:26,616] [Preprocessor.java:241] [main] Processing chromosome C1161 Processing chromosome C1161 INFO [2014-03-08 06:12:26,667] [Preprocessor.java:241] [main] Processing chromosome C11614 Processing chromosome C11614 INFO [2014-03-08 06:12:26,729] [Preprocessor.java:241] [main] Processing chromosome C11636 Processing chromosome C11636 INFO [2014-03-08 06:12:26,912] [Preprocessor.java:241] [main] Processing chromosome C11638 Processing chromosome C11638 INFO [2014-03-08 06:12:26,930] [Preprocessor.java:241] [main] Processing chromosome C11646 Processing chromosome C11646 INFO [2014-03-08 06:12:26,996] [Preprocessor.java:241] [main] Processing chromosome C1169 Processing chromosome C1169 INFO [2014-03-08 06:12:27,058] [Preprocessor.java:241] [main] Processing chromosome C11690 Processing chromosome C11690 INFO [2014-03-08 06:12:27,098] [Preprocessor.java:241] [main] Processing chromosome C11702 Processing chromosome C11702 INFO [2014-03-08 06:12:27,131] [Preprocessor.java:241] [main] Processing chromosome C11706 Processing chromosome C11706 INFO [2014-03-08 06:12:27,181] [Preprocessor.java:241] [main] Processing chromosome C11708 Processing chromosome C11708 INFO [2014-03-08 06:12:27,224] [Preprocessor.java:241] [main] Processing chromosome C11734 Processing chromosome C11734 INFO [2014-03-08 06:12:27,283] [Preprocessor.java:241] [main] Processing chromosome C1175 Processing chromosome C1175 INFO [2014-03-08 06:12:27,340] [Preprocessor.java:241] [main] Processing chromosome C11756 Processing chromosome C11756 INFO [2014-03-08 06:12:27,358] [Preprocessor.java:241] [main] Processing chromosome C11758 Processing chromosome C11758 INFO [2014-03-08 06:12:27,458] [Preprocessor.java:241] [main] Processing chromosome C11768 Processing chromosome C11768 INFO [2014-03-08 06:12:27,537] [Preprocessor.java:241] [main] Processing chromosome C1177 Processing chromosome C1177 INFO [2014-03-08 06:12:27,570] [Preprocessor.java:241] [main] Processing chromosome C11776 Processing chromosome C11776 INFO [2014-03-08 06:12:27,622] [Preprocessor.java:241] [main] Processing chromosome C11806 Processing chromosome C11806 INFO [2014-03-08 06:12:27,641] [Preprocessor.java:241] [main] Processing chromosome C11812 Processing chromosome C11812 INFO [2014-03-08 06:12:27,709] [Preprocessor.java:241] [main] Processing chromosome C11814 Processing chromosome C11814 INFO [2014-03-08 06:12:27,749] [Preprocessor.java:241] [main] Processing chromosome C11816 Processing chromosome C11816 INFO [2014-03-08 06:12:27,783] [Preprocessor.java:241] [main] Processing chromosome C11858 Processing chromosome C11858 INFO [2014-03-08 06:12:27,815] [Preprocessor.java:241] [main] Processing chromosome C11864 Processing chromosome C11864 INFO [2014-03-08 06:12:27,859] [Preprocessor.java:241] [main] Processing chromosome C11868 Processing chromosome C11868 INFO [2014-03-08 06:12:27,909] [Preprocessor.java:241] [main] Processing chromosome C11876 Processing chromosome C11876 INFO [2014-03-08 06:12:27,968] [Preprocessor.java:241] [main] Processing chromosome C11894 Processing chromosome C11894 INFO [2014-03-08 06:12:27,989] [Preprocessor.java:241] [main] Processing chromosome C11900 Processing chromosome C11900 INFO [2014-03-08 06:12:28,019] [Preprocessor.java:241] [main] Processing chromosome C11906 Processing chromosome C11906 INFO [2014-03-08 06:12:28,065] [Preprocessor.java:241] [main] Processing chromosome C1191 Processing chromosome C1191 INFO [2014-03-08 06:12:28,098] [Preprocessor.java:241] [main] Processing chromosome C11942 Processing chromosome C11942 INFO [2014-03-08 06:12:28,179] [Preprocessor.java:241] [main] Processing chromosome C11950 Processing chromosome C11950 INFO [2014-03-08 06:12:28,232] [Preprocessor.java:241] [main] Processing chromosome C11962 Processing chromosome C11962 INFO [2014-03-08 06:12:28,297] [Preprocessor.java:241] [main] Processing chromosome C11970 Processing chromosome C11970 INFO [2014-03-08 06:12:28,343] [Preprocessor.java:241] [main] Processing chromosome C12004 Processing chromosome C12004 INFO [2014-03-08 06:12:28,388] [Preprocessor.java:241] [main] Processing chromosome C12006 Processing chromosome C12006 INFO [2014-03-08 06:12:28,409] [Preprocessor.java:241] [main] Processing chromosome C12008 Processing chromosome C12008 INFO [2014-03-08 06:12:28,479] [Preprocessor.java:241] [main] Processing chromosome C12014 Processing chromosome C12014 INFO [2014-03-08 06:12:28,500] [Preprocessor.java:241] [main] Processing chromosome C12032 Processing chromosome C12032 INFO [2014-03-08 06:12:28,533] [Preprocessor.java:241] [main] Processing chromosome C12034 Processing chromosome C12034 INFO [2014-03-08 06:12:28,594] [Preprocessor.java:241] [main] Processing chromosome C1205 Processing chromosome C1205 INFO [2014-03-08 06:12:28,656] [Preprocessor.java:241] [main] Processing chromosome C12054 Processing chromosome C12054 INFO [2014-03-08 06:12:28,674] [Preprocessor.java:241] [main] Processing chromosome C12056 Processing chromosome C12056 INFO [2014-03-08 06:12:28,730] [Preprocessor.java:241] [main] Processing chromosome C12058 Processing chromosome C12058 INFO [2014-03-08 06:12:28,776] [Preprocessor.java:241] [main] Processing chromosome C12062 Processing chromosome C12062 INFO [2014-03-08 06:12:28,832] [Preprocessor.java:241] [main] Processing chromosome C12064 Processing chromosome C12064 INFO [2014-03-08 06:12:28,851] [Preprocessor.java:241] [main] Processing chromosome C12066 Processing chromosome C12066 INFO [2014-03-08 06:12:28,901] [Preprocessor.java:241] [main] Processing chromosome C12068 Processing chromosome C12068 INFO [2014-03-08 06:12:28,951] [Preprocessor.java:241] [main] Processing chromosome C1207 Processing chromosome C1207 INFO [2014-03-08 06:12:29,016] [Preprocessor.java:241] [main] Processing chromosome C12106 Processing chromosome C12106 INFO [2014-03-08 06:12:29,036] [Preprocessor.java:241] [main] Processing chromosome C12108 Processing chromosome C12108 INFO [2014-03-08 06:12:29,107] [Preprocessor.java:241] [main] Processing chromosome C12110 Processing chromosome C12110 INFO [2014-03-08 06:12:29,148] [Preprocessor.java:241] [main] Processing chromosome C12122 Processing chromosome C12122 INFO [2014-03-08 06:12:29,170] [Preprocessor.java:241] [main] Processing chromosome C12146 Processing chromosome C12146 INFO [2014-03-08 06:12:29,201] [Preprocessor.java:241] [main] Processing chromosome C12152 Processing chromosome C12152 INFO [2014-03-08 06:12:29,230] [Preprocessor.java:241] [main] Processing chromosome C12166 Processing chromosome C12166 INFO [2014-03-08 06:12:29,262] [Preprocessor.java:241] [main] Processing chromosome C12206 Processing chromosome C12206 INFO [2014-03-08 06:12:29,331] [Preprocessor.java:241] [main] Processing chromosome C12216 Processing chromosome C12216 INFO [2014-03-08 06:12:29,387] [Preprocessor.java:241] [main] Processing chromosome C12220 Processing chromosome C12220 INFO [2014-03-08 06:12:29,434] [Preprocessor.java:241] [main] Processing chromosome C12252 Processing chromosome C12252 INFO [2014-03-08 06:12:29,500] [Preprocessor.java:241] [main] Processing chromosome C12264 Processing chromosome C12264 INFO [2014-03-08 06:12:29,532] [Preprocessor.java:241] [main] Processing chromosome C12274 Processing chromosome C12274 INFO [2014-03-08 06:12:29,564] [Preprocessor.java:241] [main] Processing chromosome C12282 Processing chromosome C12282 INFO [2014-03-08 06:12:29,585] [Preprocessor.java:241] [main] Processing chromosome C12298 Processing chromosome C12298 INFO [2014-03-08 06:12:29,646] [Preprocessor.java:241] [main] Processing chromosome C12314 Processing chromosome C12314 INFO [2014-03-08 06:12:29,663] [Preprocessor.java:241] [main] Processing chromosome C12316 Processing chromosome C12316 INFO [2014-03-08 06:12:29,723] [Preprocessor.java:241] [main] Processing chromosome C12320 Processing chromosome C12320 INFO [2014-03-08 06:12:29,758] [Preprocessor.java:241] [main] Processing chromosome C12324 Processing chromosome C12324 INFO [2014-03-08 06:12:29,776] [Preprocessor.java:241] [main] Processing chromosome C12328 Processing chromosome C12328 INFO [2014-03-08 06:12:29,823] [Preprocessor.java:241] [main] Processing chromosome C12366 Processing chromosome C12366 INFO [2014-03-08 06:12:29,846] [Preprocessor.java:241] [main] Processing chromosome C12368 Processing chromosome C12368 INFO [2014-03-08 06:12:29,885] [Preprocessor.java:241] [main] Processing chromosome C12376 Processing chromosome C12376 INFO [2014-03-08 06:12:29,935] [Preprocessor.java:241] [main] Processing chromosome C12382 Processing chromosome C12382 INFO [2014-03-08 06:12:30,003] [Preprocessor.java:241] [main] Processing chromosome C12386 Processing chromosome C12386 INFO [2014-03-08 06:12:30,053] [Preprocessor.java:241] [main] Processing chromosome C12388 Processing chromosome C12388 INFO [2014-03-08 06:12:30,089] [Preprocessor.java:241] [main] Processing chromosome C12390 Processing chromosome C12390 INFO [2014-03-08 06:12:30,146] [Preprocessor.java:241] [main] Processing chromosome C12392 Processing chromosome C12392 INFO [2014-03-08 06:12:30,167] [Preprocessor.java:241] [main] Processing chromosome C12412 Processing chromosome C12412 INFO [2014-03-08 06:12:30,212] [Preprocessor.java:241] [main] Processing chromosome C12420 Processing chromosome C12420 INFO [2014-03-08 06:12:30,263] [Preprocessor.java:241] [main] Processing chromosome C12426 Processing chromosome C12426 INFO [2014-03-08 06:12:30,306] [Preprocessor.java:241] [main] Processing chromosome C12428 Processing chromosome C12428 INFO [2014-03-08 06:12:30,355] [Preprocessor.java:241] [main] Processing chromosome C12430 Processing chromosome C12430 INFO [2014-03-08 06:12:30,381] [Preprocessor.java:241] [main] Processing chromosome C12438 Processing chromosome C12438 INFO [2014-03-08 06:12:30,415] [Preprocessor.java:241] [main] Processing chromosome C12478 Processing chromosome C12478 INFO [2014-03-08 06:12:30,470] [Preprocessor.java:241] [main] Processing chromosome C12480 Processing chromosome C12480 INFO [2014-03-08 06:12:30,496] [Preprocessor.java:241] [main] Processing chromosome C12484 Processing chromosome C12484 INFO [2014-03-08 06:12:30,557] [Preprocessor.java:241] [main] Processing chromosome C12492 Processing chromosome C12492 INFO [2014-03-08 06:12:30,637] [Preprocessor.java:241] [main] Processing chromosome C12494 Processing chromosome C12494 INFO [2014-03-08 06:12:30,698] [Preprocessor.java:241] [main] Processing chromosome C12504 Processing chromosome C12504 INFO [2014-03-08 06:12:30,764] [Preprocessor.java:241] [main] Processing chromosome C12506 Processing chromosome C12506 INFO [2014-03-08 06:12:30,803] [Preprocessor.java:241] [main] Processing chromosome C12508 Processing chromosome C12508 INFO [2014-03-08 06:12:30,833] [Preprocessor.java:241] [main] Processing chromosome C12534 Processing chromosome C12534 INFO [2014-03-08 06:12:30,876] [Preprocessor.java:241] [main] Processing chromosome C12538 Processing chromosome C12538 INFO [2014-03-08 06:12:30,935] [Preprocessor.java:241] [main] Processing chromosome C12540 Processing chromosome C12540 INFO [2014-03-08 06:12:30,991] [Preprocessor.java:241] [main] Processing chromosome C12542 Processing chromosome C12542 INFO [2014-03-08 06:12:31,045] [Preprocessor.java:241] [main] Processing chromosome C12548 Processing chromosome C12548 INFO [2014-03-08 06:12:31,094] [Preprocessor.java:241] [main] Processing chromosome C12558 Processing chromosome C12558 INFO [2014-03-08 06:12:31,136] [Preprocessor.java:241] [main] Processing chromosome C12584 Processing chromosome C12584 INFO [2014-03-08 06:12:31,189] [Preprocessor.java:241] [main] Processing chromosome C12590 Processing chromosome C12590 INFO [2014-03-08 06:12:31,232] [Preprocessor.java:241] [main] Processing chromosome C12592 Processing chromosome C12592 INFO [2014-03-08 06:12:31,249] [Preprocessor.java:241] [main] Processing chromosome C12618 Processing chromosome C12618 INFO [2014-03-08 06:12:31,313] [Preprocessor.java:241] [main] Processing chromosome C12622 Processing chromosome C12622 INFO [2014-03-08 06:12:31,342] [Preprocessor.java:241] [main] Processing chromosome C12658 Processing chromosome C12658 INFO [2014-03-08 06:12:31,375] [Preprocessor.java:241] [main] Processing chromosome C12660 Processing chromosome C12660 INFO [2014-03-08 06:12:31,413] [Preprocessor.java:241] [main] Processing chromosome C12662 Processing chromosome C12662 INFO [2014-03-08 06:12:31,471] [Preprocessor.java:241] [main] Processing chromosome C12670 Processing chromosome C12670 INFO [2014-03-08 06:12:31,488] [Preprocessor.java:241] [main] Processing chromosome C12682 Processing chromosome C12682 INFO [2014-03-08 06:12:31,528] [Preprocessor.java:241] [main] Processing chromosome C12708 Processing chromosome C12708 INFO [2014-03-08 06:12:31,558] [Preprocessor.java:241] [main] Processing chromosome C12718 Processing chromosome C12718 INFO [2014-03-08 06:12:31,577] [Preprocessor.java:241] [main] Processing chromosome C12722 Processing chromosome C12722 INFO [2014-03-08 06:12:31,616] [Preprocessor.java:241] [main] Processing chromosome C12724 Processing chromosome C12724 INFO [2014-03-08 06:12:31,658] [Preprocessor.java:241] [main] Processing chromosome C12738 Processing chromosome C12738 INFO [2014-03-08 06:12:31,700] [Preprocessor.java:241] [main] Processing chromosome C12748 Processing chromosome C12748 INFO [2014-03-08 06:12:31,738] [Preprocessor.java:241] [main] Processing chromosome C12758 Processing chromosome C12758 INFO [2014-03-08 06:12:31,809] [Preprocessor.java:241] [main] Processing chromosome C12760 Processing chromosome C12760 INFO [2014-03-08 06:12:31,853] [Preprocessor.java:241] [main] Processing chromosome C12764 Processing chromosome C12764 INFO [2014-03-08 06:12:31,907] [Preprocessor.java:241] [main] Processing chromosome C12778 Processing chromosome C12778 INFO [2014-03-08 06:12:31,924] [Preprocessor.java:241] [main] Processing chromosome C12786 Processing chromosome C12786 INFO [2014-03-08 06:12:31,951] [Preprocessor.java:241] [main] Processing chromosome C12798 Processing chromosome C12798 INFO [2014-03-08 06:12:32,009] [Preprocessor.java:241] [main] Processing chromosome C12814 Processing chromosome C12814 INFO [2014-03-08 06:12:32,056] [Preprocessor.java:241] [main] Processing chromosome C12828 Processing chromosome C12828 INFO [2014-03-08 06:12:32,076] [Preprocessor.java:241] [main] Processing chromosome C12830 Processing chromosome C12830 INFO [2014-03-08 06:12:32,132] [Preprocessor.java:241] [main] Processing chromosome C12832 Processing chromosome C12832 INFO [2014-03-08 06:12:32,150] [Preprocessor.java:241] [main] Processing chromosome C12838 Processing chromosome C12838 INFO [2014-03-08 06:12:32,216] [Preprocessor.java:241] [main] Processing chromosome C12840 Processing chromosome C12840 INFO [2014-03-08 06:12:32,240] [Preprocessor.java:241] [main] Processing chromosome C12848 Processing chromosome C12848 INFO [2014-03-08 06:12:32,280] [Preprocessor.java:241] [main] Processing chromosome C12882 Processing chromosome C12882 INFO [2014-03-08 06:12:32,340] [Preprocessor.java:241] [main] Processing chromosome C12906 Processing chromosome C12906 INFO [2014-03-08 06:12:32,359] [Preprocessor.java:241] [main] Processing chromosome C12916 Processing chromosome C12916 INFO [2014-03-08 06:12:32,424] [Preprocessor.java:241] [main] Processing chromosome C12928 Processing chromosome C12928 INFO [2014-03-08 06:12:32,457] [Preprocessor.java:241] [main] Processing chromosome C12930 Processing chromosome C12930 INFO [2014-03-08 06:12:32,512] [Preprocessor.java:241] [main] Processing chromosome C12932 Processing chromosome C12932 INFO [2014-03-08 06:12:32,568] [Preprocessor.java:241] [main] Processing chromosome C12934 Processing chromosome C12934 INFO [2014-03-08 06:12:32,623] [Preprocessor.java:241] [main] Processing chromosome C12938 Processing chromosome C12938 INFO [2014-03-08 06:12:32,679] [Preprocessor.java:241] [main] Processing chromosome C12970 Processing chromosome C12970 INFO [2014-03-08 06:12:32,743] [Preprocessor.java:241] [main] Processing chromosome C12972 Processing chromosome C12972 INFO [2014-03-08 06:12:32,801] [Preprocessor.java:241] [main] Processing chromosome C12974 Processing chromosome C12974 INFO [2014-03-08 06:12:32,849] [Preprocessor.java:241] [main] Processing chromosome C12984 Processing chromosome C12984 INFO [2014-03-08 06:12:32,869] [Preprocessor.java:241] [main] Processing chromosome C13016 Processing chromosome C13016 INFO [2014-03-08 06:12:32,897] [Preprocessor.java:241] [main] Processing chromosome C13020 Processing chromosome C13020 INFO [2014-03-08 06:12:32,959] [Preprocessor.java:241] [main] Processing chromosome C13026 Processing chromosome C13026 INFO [2014-03-08 06:12:33,012] [Preprocessor.java:241] [main] Processing chromosome C13028 Processing chromosome C13028 INFO [2014-03-08 06:12:33,074] [Preprocessor.java:241] [main] Processing chromosome C1305 Processing chromosome C1305 INFO [2014-03-08 06:12:33,134] [Preprocessor.java:241] [main] Processing chromosome C13050 Processing chromosome C13050 INFO [2014-03-08 06:12:33,151] [Preprocessor.java:241] [main] Processing chromosome C13052 Processing chromosome C13052 INFO [2014-03-08 06:12:33,228] [Preprocessor.java:241] [main] Processing chromosome C13054 Processing chromosome C13054 INFO [2014-03-08 06:12:33,260] [Preprocessor.java:241] [main] Processing chromosome C13080 Processing chromosome C13080 INFO [2014-03-08 06:12:33,294] [Preprocessor.java:241] [main] Processing chromosome C13094 Processing chromosome C13094 INFO [2014-03-08 06:12:33,320] [Preprocessor.java:241] [main] Processing chromosome C13098 Processing chromosome C13098 INFO [2014-03-08 06:12:33,390] [Preprocessor.java:241] [main] Processing chromosome C13134 Processing chromosome C13134 INFO [2014-03-08 06:12:33,430] [Preprocessor.java:241] [main] Processing chromosome C13136 Processing chromosome C13136 INFO [2014-03-08 06:12:33,477] [Preprocessor.java:241] [main] Processing chromosome C13140 Processing chromosome C13140 INFO [2014-03-08 06:12:33,527] [Preprocessor.java:241] [main] Processing chromosome C13156 Processing chromosome C13156 INFO [2014-03-08 06:12:33,588] [Preprocessor.java:241] [main] Processing chromosome C13164 Processing chromosome C13164 INFO [2014-03-08 06:12:33,605] [Preprocessor.java:241] [main] Processing chromosome C13178 Processing chromosome C13178 INFO [2014-03-08 06:12:33,644] [Preprocessor.java:241] [main] Processing chromosome C13180 Processing chromosome C13180 INFO [2014-03-08 06:12:33,660] [Preprocessor.java:241] [main] Processing chromosome C13186 Processing chromosome C13186 INFO [2014-03-08 06:12:33,700] [Preprocessor.java:241] [main] Processing chromosome C1319 Processing chromosome C1319 INFO [2014-03-08 06:12:33,731] [Preprocessor.java:241] [main] Processing chromosome C13208 Processing chromosome C13208 INFO [2014-03-08 06:12:33,767] [Preprocessor.java:241] [main] Processing chromosome C13218 Processing chromosome C13218 INFO [2014-03-08 06:12:33,815] [Preprocessor.java:241] [main] Processing chromosome C13260 Processing chromosome C13260 INFO [2014-03-08 06:12:33,833] [Preprocessor.java:241] [main] Processing chromosome C13266 Processing chromosome C13266 INFO [2014-03-08 06:12:33,875] [Preprocessor.java:241] [main] Processing chromosome C13268 Processing chromosome C13268 INFO [2014-03-08 06:12:33,935] [Preprocessor.java:241] [main] Processing chromosome C13320 Processing chromosome C13320 INFO [2014-03-08 06:12:33,998] [Preprocessor.java:241] [main] Processing chromosome C13324 Processing chromosome C13324 INFO [2014-03-08 06:12:34,041] [Preprocessor.java:241] [main] Processing chromosome C13326 Processing chromosome C13326 INFO [2014-03-08 06:12:34,087] [Preprocessor.java:241] [main] Processing chromosome C13328 Processing chromosome C13328 INFO [2014-03-08 06:12:34,146] [Preprocessor.java:241] [main] Processing chromosome C13346 Processing chromosome C13346 INFO [2014-03-08 06:12:34,166] [Preprocessor.java:241] [main] Processing chromosome C13370 Processing chromosome C13370 INFO [2014-03-08 06:12:34,205] [Preprocessor.java:241] [main] Processing chromosome C13396 Processing chromosome C13396 INFO [2014-03-08 06:12:34,245] [Preprocessor.java:241] [main] Processing chromosome C13406 Processing chromosome C13406 INFO [2014-03-08 06:12:34,313] [Preprocessor.java:241] [main] Processing chromosome C13424 Processing chromosome C13424 INFO [2014-03-08 06:12:34,332] [Preprocessor.java:241] [main] Processing chromosome C13440 Processing chromosome C13440 INFO [2014-03-08 06:12:34,401] [Preprocessor.java:241] [main] Processing chromosome C13460 Processing chromosome C13460 INFO [2014-03-08 06:12:34,420] [Preprocessor.java:241] [main] Processing chromosome C13462 Processing chromosome C13462 INFO [2014-03-08 06:12:34,461] [Preprocessor.java:241] [main] Processing chromosome C13466 Processing chromosome C13466 INFO [2014-03-08 06:12:34,478] [Preprocessor.java:241] [main] Processing chromosome C13508 Processing chromosome C13508 INFO [2014-03-08 06:12:34,556] [Preprocessor.java:241] [main] Processing chromosome C13512 Processing chromosome C13512 INFO [2014-03-08 06:12:34,610] [Preprocessor.java:241] [main] Processing chromosome C13528 Processing chromosome C13528 INFO [2014-03-08 06:12:34,671] [Preprocessor.java:241] [main] Processing chromosome C13532 Processing chromosome C13532 INFO [2014-03-08 06:12:34,742] [Preprocessor.java:241] [main] Processing chromosome C13552 Processing chromosome C13552 INFO [2014-03-08 06:12:34,798] [Preprocessor.java:241] [main] Processing chromosome C13584 Processing chromosome C13584 INFO [2014-03-08 06:12:34,875] [Preprocessor.java:241] [main] Processing chromosome C13590 Processing chromosome C13590 INFO [2014-03-08 06:12:34,919] [Preprocessor.java:241] [main] Processing chromosome C13592 Processing chromosome C13592 INFO [2014-03-08 06:12:35,000] [Preprocessor.java:241] [main] Processing chromosome C13600 Processing chromosome C13600 INFO [2014-03-08 06:12:35,024] [Preprocessor.java:241] [main] Processing chromosome C13614 Processing chromosome C13614 INFO [2014-03-08 06:12:35,099] [Preprocessor.java:241] [main] Processing chromosome C13652 Processing chromosome C13652 INFO [2014-03-08 06:12:35,127] [Preprocessor.java:241] [main] Processing chromosome C13654 Processing chromosome C13654 INFO [2014-03-08 06:12:35,168] [Preprocessor.java:241] [main] Processing chromosome C13666 Processing chromosome C13666 INFO [2014-03-08 06:12:35,205] [Preprocessor.java:241] [main] Processing chromosome C13690 Processing chromosome C13690 INFO [2014-03-08 06:12:35,267] [Preprocessor.java:241] [main] Processing chromosome C13716 Processing chromosome C13716 INFO [2014-03-08 06:12:35,283] [Preprocessor.java:241] [main] Processing chromosome C1373 Processing chromosome C1373 INFO [2014-03-08 06:12:35,328] [Preprocessor.java:241] [main] Processing chromosome C13732 Processing chromosome C13732 INFO [2014-03-08 06:12:35,390] [Preprocessor.java:241] [main] Processing chromosome C13786 Processing chromosome C13786 INFO [2014-03-08 06:12:35,440] [Preprocessor.java:241] [main] Processing chromosome C13810 Processing chromosome C13810 INFO [2014-03-08 06:12:35,507] [Preprocessor.java:241] [main] Processing chromosome C13834 Processing chromosome C13834 INFO [2014-03-08 06:12:35,525] [Preprocessor.java:241] [main] Processing chromosome C13854 Processing chromosome C13854 INFO [2014-03-08 06:12:35,588] [Preprocessor.java:241] [main] Processing chromosome C13860 Processing chromosome C13860 INFO [2014-03-08 06:12:35,605] [Preprocessor.java:241] [main] Processing chromosome C13868 Processing chromosome C13868 INFO [2014-03-08 06:12:35,664] [Preprocessor.java:241] [main] Processing chromosome C13874 Processing chromosome C13874 INFO [2014-03-08 06:12:35,681] [Preprocessor.java:241] [main] Processing chromosome C13878 Processing chromosome C13878 INFO [2014-03-08 06:12:35,758] [Preprocessor.java:241] [main] Processing chromosome C13888 Processing chromosome C13888 INFO [2014-03-08 06:12:35,816] [Preprocessor.java:241] [main] Processing chromosome C1389 Processing chromosome C1389 INFO [2014-03-08 06:12:35,877] [Preprocessor.java:241] [main] Processing chromosome C13904 Processing chromosome C13904 INFO [2014-03-08 06:12:35,899] [Preprocessor.java:241] [main] Processing chromosome C13908 Processing chromosome C13908 INFO [2014-03-08 06:12:35,938] [Preprocessor.java:241] [main] Processing chromosome C13916 Processing chromosome C13916 INFO [2014-03-08 06:12:36,003] [Preprocessor.java:241] [main] Processing chromosome C13930 Processing chromosome C13930 INFO [2014-03-08 06:12:36,040] [Preprocessor.java:241] [main] Processing chromosome C13940 Processing chromosome C13940 INFO [2014-03-08 06:12:36,084] [Preprocessor.java:241] [main] Processing chromosome C13950 Processing chromosome C13950 INFO [2014-03-08 06:12:36,117] [Preprocessor.java:241] [main] Processing chromosome C13992 Processing chromosome C13992 INFO [2014-03-08 06:12:36,143] [Preprocessor.java:241] [main] Processing chromosome C14008 Processing chromosome C14008 INFO [2014-03-08 06:12:36,169] [Preprocessor.java:241] [main] Processing chromosome C14022 Processing chromosome C14022 INFO [2014-03-08 06:12:36,227] [Preprocessor.java:241] [main] Processing chromosome C14066 Processing chromosome C14066 INFO [2014-03-08 06:12:36,261] [Preprocessor.java:241] [main] Processing chromosome C14086 Processing chromosome C14086 INFO [2014-03-08 06:12:36,279] [Preprocessor.java:241] [main] Processing chromosome C14104 Processing chromosome C14104 INFO [2014-03-08 06:12:36,354] [Preprocessor.java:241] [main] Processing chromosome C14108 Processing chromosome C14108 INFO [2014-03-08 06:12:36,396] [Preprocessor.java:241] [main] Processing chromosome C14128 Processing chromosome C14128 INFO [2014-03-08 06:12:36,440] [Preprocessor.java:241] [main] Processing chromosome C14162 Processing chromosome C14162 INFO [2014-03-08 06:12:36,480] [Preprocessor.java:241] [main] Processing chromosome C14170 Processing chromosome C14170 INFO [2014-03-08 06:12:36,496] [Preprocessor.java:241] [main] Processing chromosome C14184 Processing chromosome C14184 INFO [2014-03-08 06:12:36,566] [Preprocessor.java:241] [main] Processing chromosome C14186 Processing chromosome C14186 INFO [2014-03-08 06:12:36,627] [Preprocessor.java:241] [main] Processing chromosome C14214 Processing chromosome C14214 INFO [2014-03-08 06:12:36,679] [Preprocessor.java:241] [main] Processing chromosome C14226 Processing chromosome C14226 INFO [2014-03-08 06:12:36,718] [Preprocessor.java:241] [main] Processing chromosome C14228 Processing chromosome C14228 INFO [2014-03-08 06:12:36,745] [Preprocessor.java:241] [main] Processing chromosome C14248 Processing chromosome C14248 INFO [2014-03-08 06:12:36,799] [Preprocessor.java:241] [main] Processing chromosome C14276 Processing chromosome C14276 INFO [2014-03-08 06:12:36,815] [Preprocessor.java:241] [main] Processing chromosome C14282 Processing chromosome C14282 INFO [2014-03-08 06:12:36,871] [Preprocessor.java:241] [main] Processing chromosome C14304 Processing chromosome C14304 INFO [2014-03-08 06:12:36,887] [Preprocessor.java:241] [main] Processing chromosome C14326 Processing chromosome C14326 INFO [2014-03-08 06:12:36,934] [Preprocessor.java:241] [main] Processing chromosome C14340 Processing chromosome C14340 INFO [2014-03-08 06:12:37,003] [Preprocessor.java:241] [main] Processing chromosome C14362 Processing chromosome C14362 INFO [2014-03-08 06:12:37,077] [Preprocessor.java:241] [main] Processing chromosome C14366 Processing chromosome C14366 INFO [2014-03-08 06:12:37,106] [Preprocessor.java:241] [main] Processing chromosome C14378 Processing chromosome C14378 INFO [2014-03-08 06:12:37,131] [Preprocessor.java:241] [main] Processing chromosome C14386 Processing chromosome C14386 INFO [2014-03-08 06:12:37,201] [Preprocessor.java:241] [main] Processing chromosome C14400 Processing chromosome C14400 INFO [2014-03-08 06:12:37,263] [Preprocessor.java:241] [main] Processing chromosome C14418 Processing chromosome C14418 INFO [2014-03-08 06:12:37,328] [Preprocessor.java:241] [main] Processing chromosome C14424 Processing chromosome C14424 INFO [2014-03-08 06:12:37,390] [Preprocessor.java:241] [main] Processing chromosome C14432 Processing chromosome C14432 INFO [2014-03-08 06:12:37,462] [Preprocessor.java:241] [main] Processing chromosome C14434 Processing chromosome C14434 INFO [2014-03-08 06:12:37,520] [Preprocessor.java:241] [main] Processing chromosome C14446 Processing chromosome C14446 INFO [2014-03-08 06:12:37,574] [Preprocessor.java:241] [main] Processing chromosome C14450 Processing chromosome C14450 INFO [2014-03-08 06:12:37,616] [Preprocessor.java:241] [main] Processing chromosome C14454 Processing chromosome C14454 INFO [2014-03-08 06:12:37,632] [Preprocessor.java:241] [main] Processing chromosome C14468 Processing chromosome C14468 INFO [2014-03-08 06:12:37,695] [Preprocessor.java:241] [main] Processing chromosome C14478 Processing chromosome C14478 INFO [2014-03-08 06:12:37,712] [Preprocessor.java:241] [main] Processing chromosome C14484 Processing chromosome C14484 INFO [2014-03-08 06:12:37,764] [Preprocessor.java:241] [main] Processing chromosome C14486 Processing chromosome C14486 INFO [2014-03-08 06:12:37,784] [Preprocessor.java:241] [main] Processing chromosome C14498 Processing chromosome C14498 INFO [2014-03-08 06:12:37,843] [Preprocessor.java:241] [main] Processing chromosome C14510 Processing chromosome C14510 INFO [2014-03-08 06:12:37,881] [Preprocessor.java:241] [main] Processing chromosome C14520 Processing chromosome C14520 INFO [2014-03-08 06:12:37,918] [Preprocessor.java:241] [main] Processing chromosome C14528 Processing chromosome C14528 INFO [2014-03-08 06:12:37,957] [Preprocessor.java:241] [main] Processing chromosome C14542 Processing chromosome C14542 INFO [2014-03-08 06:12:38,001] [Preprocessor.java:241] [main] Processing chromosome C14546 Processing chromosome C14546 INFO [2014-03-08 06:12:38,022] [Preprocessor.java:241] [main] Processing chromosome C14560 Processing chromosome C14560 INFO [2014-03-08 06:12:38,086] [Preprocessor.java:241] [main] Processing chromosome C14566 Processing chromosome C14566 INFO [2014-03-08 06:12:38,140] [Preprocessor.java:241] [main] Processing chromosome C14568 Processing chromosome C14568 INFO [2014-03-08 06:12:38,196] [Preprocessor.java:241] [main] Processing chromosome C14588 Processing chromosome C14588 INFO [2014-03-08 06:12:38,224] [Preprocessor.java:241] [main] Processing chromosome C14614 Processing chromosome C14614 INFO [2014-03-08 06:12:38,281] [Preprocessor.java:241] [main] Processing chromosome C14626 Processing chromosome C14626 INFO [2014-03-08 06:12:38,294] [Preprocessor.java:241] [main] Processing chromosome C14636 Processing chromosome C14636 INFO [2014-03-08 06:12:38,342] [Preprocessor.java:241] [main] Processing chromosome C14638 Processing chromosome C14638 INFO [2014-03-08 06:12:38,378] [Preprocessor.java:241] [main] Processing chromosome C14652 Processing chromosome C14652 INFO [2014-03-08 06:12:38,399] [Preprocessor.java:241] [main] Processing chromosome C14668 Processing chromosome C14668 INFO [2014-03-08 06:12:38,435] [Preprocessor.java:241] [main] Processing chromosome C14678 Processing chromosome C14678 INFO [2014-03-08 06:12:38,451] [Preprocessor.java:241] [main] Processing chromosome C14686 Processing chromosome C14686 INFO [2014-03-08 06:12:38,470] [Preprocessor.java:241] [main] Processing chromosome C14692 Processing chromosome C14692 INFO [2014-03-08 06:12:38,521] [Preprocessor.java:241] [main] Processing chromosome C14702 Processing chromosome C14702 INFO [2014-03-08 06:12:38,544] [Preprocessor.java:241] [main] Processing chromosome C14704 Processing chromosome C14704 INFO [2014-03-08 06:12:38,557] [Preprocessor.java:241] [main] Processing chromosome C14706 Processing chromosome C14706 INFO [2014-03-08 06:12:38,623] [Preprocessor.java:241] [main] Processing chromosome C14716 Processing chromosome C14716 INFO [2014-03-08 06:12:38,636] [Preprocessor.java:241] [main] Processing chromosome C14718 Processing chromosome C14718 INFO [2014-03-08 06:12:38,656] [Preprocessor.java:241] [main] Processing chromosome C14724 Processing chromosome C14724 INFO [2014-03-08 06:12:38,717] [Preprocessor.java:241] [main] Processing chromosome C14734 Processing chromosome C14734 INFO [2014-03-08 06:12:38,776] [Preprocessor.java:241] [main] Processing chromosome C14744 Processing chromosome C14744 INFO [2014-03-08 06:12:38,842] [Preprocessor.java:241] [main] Processing chromosome C14746 Processing chromosome C14746 INFO [2014-03-08 06:12:38,880] [Preprocessor.java:241] [main] Processing chromosome C14774 Processing chromosome C14774 INFO [2014-03-08 06:12:38,916] [Preprocessor.java:241] [main] Processing chromosome C14782 Processing chromosome C14782 INFO [2014-03-08 06:12:38,966] [Preprocessor.java:241] [main] Processing chromosome C14788 Processing chromosome C14788 INFO [2014-03-08 06:12:39,026] [Preprocessor.java:241] [main] Processing chromosome C14790 Processing chromosome C14790 INFO [2014-03-08 06:12:39,091] [Preprocessor.java:241] [main] Processing chromosome C14800 Processing chromosome C14800 INFO [2014-03-08 06:12:39,130] [Preprocessor.java:241] [main] Processing chromosome C14818 Processing chromosome C14818 INFO [2014-03-08 06:12:39,210] [Preprocessor.java:241] [main] Processing chromosome C14822 Processing chromosome C14822 INFO [2014-03-08 06:12:39,243] [Preprocessor.java:241] [main] Processing chromosome C14832 Processing chromosome C14832 INFO [2014-03-08 06:12:39,299] [Preprocessor.java:241] [main] Processing chromosome C14848 Processing chromosome C14848 INFO [2014-03-08 06:12:39,369] [Preprocessor.java:241] [main] Processing chromosome C14852 Processing chromosome C14852 INFO [2014-03-08 06:12:39,411] [Preprocessor.java:241] [main] Processing chromosome C14858 Processing chromosome C14858 INFO [2014-03-08 06:12:39,471] [Preprocessor.java:241] [main] Processing chromosome C14868 Processing chromosome C14868 INFO [2014-03-08 06:12:39,535] [Preprocessor.java:241] [main] Processing chromosome C14880 Processing chromosome C14880 INFO [2014-03-08 06:12:39,609] [Preprocessor.java:241] [main] Processing chromosome C14902 Processing chromosome C14902 INFO [2014-03-08 06:12:39,687] [Preprocessor.java:241] [main] Processing chromosome C14906 Processing chromosome C14906 INFO [2014-03-08 06:12:39,744] [Preprocessor.java:241] [main] Processing chromosome C14910 Processing chromosome C14910 INFO [2014-03-08 06:12:39,797] [Preprocessor.java:241] [main] Processing chromosome C14924 Processing chromosome C14924 INFO [2014-03-08 06:12:39,830] [Preprocessor.java:241] [main] Processing chromosome C14940 Processing chromosome C14940 INFO [2014-03-08 06:12:39,879] [Preprocessor.java:241] [main] Processing chromosome C14942 Processing chromosome C14942 INFO [2014-03-08 06:12:39,895] [Preprocessor.java:241] [main] Processing chromosome C14944 Processing chromosome C14944 INFO [2014-03-08 06:12:39,938] [Preprocessor.java:241] [main] Processing chromosome C14946 Processing chromosome C14946 INFO [2014-03-08 06:12:39,989] [Preprocessor.java:241] [main] Processing chromosome C14952 Processing chromosome C14952 INFO [2014-03-08 06:12:40,002] [Preprocessor.java:241] [main] Processing chromosome C14958 Processing chromosome C14958 INFO [2014-03-08 06:12:40,056] [Preprocessor.java:241] [main] Processing chromosome C14966 Processing chromosome C14966 INFO [2014-03-08 06:12:40,078] [Preprocessor.java:241] [main] Processing chromosome C14984 Processing chromosome C14984 INFO [2014-03-08 06:12:40,132] [Preprocessor.java:241] [main] Processing chromosome C15006 Processing chromosome C15006 INFO [2014-03-08 06:12:40,169] [Preprocessor.java:241] [main] Processing chromosome C15022 Processing chromosome C15022 INFO [2014-03-08 06:12:40,213] [Preprocessor.java:241] [main] Processing chromosome C15024 Processing chromosome C15024 INFO [2014-03-08 06:12:40,264] [Preprocessor.java:241] [main] Processing chromosome C1503 Processing chromosome C1503 INFO [2014-03-08 06:12:40,326] [Preprocessor.java:241] [main] Processing chromosome C15064 Processing chromosome C15064 INFO [2014-03-08 06:12:40,393] [Preprocessor.java:241] [main] Processing chromosome C15086 Processing chromosome C15086 INFO [2014-03-08 06:12:40,410] [Preprocessor.java:241] [main] Processing chromosome C15112 Processing chromosome C15112 INFO [2014-03-08 06:12:40,447] [Preprocessor.java:241] [main] Processing chromosome C15138 Processing chromosome C15138 INFO [2014-03-08 06:12:40,473] [Preprocessor.java:241] [main] Processing chromosome C15142 Processing chromosome C15142 INFO [2014-03-08 06:12:40,505] [Preprocessor.java:241] [main] Processing chromosome C15154 Processing chromosome C15154 INFO [2014-03-08 06:12:40,526] [Preprocessor.java:241] [main] Processing chromosome C15160 Processing chromosome C15160 INFO [2014-03-08 06:12:40,533] [Preprocessor.java:241] [main] Processing chromosome C15162 Processing chromosome C15162 INFO [2014-03-08 06:12:40,564] [Preprocessor.java:241] [main] Processing chromosome C15164 Processing chromosome C15164 INFO [2014-03-08 06:12:40,577] [Preprocessor.java:241] [main] Processing chromosome C15180 Processing chromosome C15180 INFO [2014-03-08 06:12:40,636] [Preprocessor.java:241] [main] Processing chromosome C15188 Processing chromosome C15188 INFO [2014-03-08 06:12:40,692] [Preprocessor.java:241] [main] Processing chromosome C15202 Processing chromosome C15202 INFO [2014-03-08 06:12:40,723] [Preprocessor.java:241] [main] Processing chromosome C15240 Processing chromosome C15240 INFO [2014-03-08 06:12:40,760] [Preprocessor.java:241] [main] Processing chromosome C15242 Processing chromosome C15242 INFO [2014-03-08 06:12:40,810] [Preprocessor.java:241] [main] Processing chromosome C15260 Processing chromosome C15260 INFO [2014-03-08 06:12:40,874] [Preprocessor.java:241] [main] Processing chromosome C15276 Processing chromosome C15276 INFO [2014-03-08 06:12:40,887] [Preprocessor.java:241] [main] Processing chromosome C1531 Processing chromosome C1531 INFO [2014-03-08 06:12:40,952] [Preprocessor.java:241] [main] Processing chromosome C15324 Processing chromosome C15324 INFO [2014-03-08 06:12:40,989] [Preprocessor.java:241] [main] Processing chromosome C15334 Processing chromosome C15334 INFO [2014-03-08 06:12:41,002] [Preprocessor.java:241] [main] Processing chromosome C15338 Processing chromosome C15338 INFO [2014-03-08 06:12:41,031] [Preprocessor.java:241] [main] Processing chromosome C15340 Processing chromosome C15340 INFO [2014-03-08 06:12:41,085] [Preprocessor.java:241] [main] Processing chromosome C15342 Processing chromosome C15342 INFO [2014-03-08 06:12:41,099] [Preprocessor.java:241] [main] Processing chromosome C15346 Processing chromosome C15346 INFO [2014-03-08 06:12:41,143] [Preprocessor.java:241] [main] Processing chromosome C15348 Processing chromosome C15348 INFO [2014-03-08 06:12:41,156] [Preprocessor.java:241] [main] Processing chromosome C1535 Processing chromosome C1535 INFO [2014-03-08 06:12:41,194] [Preprocessor.java:241] [main] Processing chromosome C15352 Processing chromosome C15352 INFO [2014-03-08 06:12:41,226] [Preprocessor.java:241] [main] Processing chromosome C15386 Processing chromosome C15386 INFO [2014-03-08 06:12:41,277] [Preprocessor.java:241] [main] Processing chromosome C15404 Processing chromosome C15404 INFO [2014-03-08 06:12:41,317] [Preprocessor.java:241] [main] Processing chromosome C15424 Processing chromosome C15424 INFO [2014-03-08 06:12:41,329] [Preprocessor.java:241] [main] Processing chromosome C15430 Processing chromosome C15430 INFO [2014-03-08 06:12:41,366] [Preprocessor.java:241] [main] Processing chromosome C15436 Processing chromosome C15436 INFO [2014-03-08 06:12:41,379] [Preprocessor.java:241] [main] Processing chromosome C15440 Processing chromosome C15440 INFO [2014-03-08 06:12:41,431] [Preprocessor.java:241] [main] Processing chromosome C15448 Processing chromosome C15448 INFO [2014-03-08 06:12:41,482] [Preprocessor.java:241] [main] Processing chromosome C15458 Processing chromosome C15458 INFO [2014-03-08 06:12:41,499] [Preprocessor.java:241] [main] Processing chromosome C15460 Processing chromosome C15460 INFO [2014-03-08 06:12:41,543] [Preprocessor.java:241] [main] Processing chromosome C15462 Processing chromosome C15462 INFO [2014-03-08 06:12:41,555] [Preprocessor.java:241] [main] Processing chromosome C15466 Processing chromosome C15466 INFO [2014-03-08 06:12:41,621] [Preprocessor.java:241] [main] Processing chromosome C15498 Processing chromosome C15498 INFO [2014-03-08 06:12:41,682] [Preprocessor.java:241] [main] Processing chromosome C15520 Processing chromosome C15520 INFO [2014-03-08 06:12:41,705] [Preprocessor.java:241] [main] Processing chromosome C15522 Processing chromosome C15522 INFO [2014-03-08 06:12:41,757] [Preprocessor.java:241] [main] Processing chromosome C1553 Processing chromosome C1553 INFO [2014-03-08 06:12:41,789] [Preprocessor.java:241] [main] Processing chromosome C15538 Processing chromosome C15538 INFO [2014-03-08 06:12:41,862] [Preprocessor.java:241] [main] Processing chromosome C15544 Processing chromosome C15544 INFO [2014-03-08 06:12:41,910] [Preprocessor.java:241] [main] Processing chromosome C15552 Processing chromosome C15552 INFO [2014-03-08 06:12:41,966] [Preprocessor.java:241] [main] Processing chromosome C15560 Processing chromosome C15560 INFO [2014-03-08 06:12:42,028] [Preprocessor.java:241] [main] Processing chromosome C15568 Processing chromosome C15568 INFO [2014-03-08 06:12:42,078] [Preprocessor.java:241] [main] Processing chromosome C15592 Processing chromosome C15592 INFO [2014-03-08 06:12:42,135] [Preprocessor.java:241] [main] Processing chromosome C15646 Processing chromosome C15646 INFO [2014-03-08 06:12:42,194] [Preprocessor.java:241] [main] Processing chromosome C15662 Processing chromosome C15662 INFO [2014-03-08 06:12:42,206] [Preprocessor.java:241] [main] Processing chromosome C15678 Processing chromosome C15678 INFO [2014-03-08 06:12:42,259] [Preprocessor.java:241] [main] Processing chromosome C15686 Processing chromosome C15686 INFO [2014-03-08 06:12:42,272] [Preprocessor.java:241] [main] Processing chromosome C15696 Processing chromosome C15696 INFO [2014-03-08 06:12:42,303] [Preprocessor.java:241] [main] Processing chromosome C15720 Processing chromosome C15720 INFO [2014-03-08 06:12:42,364] [Preprocessor.java:241] [main] Processing chromosome C15740 Processing chromosome C15740 INFO [2014-03-08 06:12:42,375] [Preprocessor.java:241] [main] Processing chromosome C15750 Processing chromosome C15750 INFO [2014-03-08 06:12:42,421] [Preprocessor.java:241] [main] Processing chromosome C15766 Processing chromosome C15766 INFO [2014-03-08 06:12:42,507] [Preprocessor.java:241] [main] Processing chromosome C15768 Processing chromosome C15768 INFO [2014-03-08 06:12:42,518] [Preprocessor.java:241] [main] Processing chromosome C15788 Processing chromosome C15788 INFO [2014-03-08 06:12:42,536] [Preprocessor.java:241] [main] Processing chromosome C15798 Processing chromosome C15798 INFO [2014-03-08 06:12:42,597] [Preprocessor.java:241] [main] Processing chromosome C15816 Processing chromosome C15816 INFO [2014-03-08 06:12:42,655] [Preprocessor.java:241] [main] Processing chromosome C15818 Processing chromosome C15818 INFO [2014-03-08 06:12:42,683] [Preprocessor.java:241] [main] Processing chromosome C15838 Processing chromosome C15838 INFO [2014-03-08 06:12:42,709] [Preprocessor.java:241] [main] Processing chromosome C15846 Processing chromosome C15846 INFO [2014-03-08 06:12:42,733] [Preprocessor.java:241] [main] Processing chromosome C15848 Processing chromosome C15848 INFO [2014-03-08 06:12:42,786] [Preprocessor.java:241] [main] Processing chromosome C15860 Processing chromosome C15860 INFO [2014-03-08 06:12:42,817] [Preprocessor.java:241] [main] Processing chromosome C15892 Processing chromosome C15892 INFO [2014-03-08 06:12:42,853] [Preprocessor.java:241] [main] Processing chromosome C15894 Processing chromosome C15894 INFO [2014-03-08 06:12:42,908] [Preprocessor.java:241] [main] Processing chromosome C15902 Processing chromosome C15902 INFO [2014-03-08 06:12:42,940] [Preprocessor.java:241] [main] Processing chromosome C15904 Processing chromosome C15904 INFO [2014-03-08 06:12:42,995] [Preprocessor.java:241] [main] Processing chromosome C15922 Processing chromosome C15922 INFO [2014-03-08 06:12:43,012] [Preprocessor.java:241] [main] Processing chromosome C15932 Processing chromosome C15932 INFO [2014-03-08 06:12:43,074] [Preprocessor.java:241] [main] Processing chromosome C15934 Processing chromosome C15934 INFO [2014-03-08 06:12:43,121] [Preprocessor.java:241] [main] Processing chromosome C15952 Processing chromosome C15952 INFO [2014-03-08 06:12:43,188] [Preprocessor.java:241] [main] Processing chromosome C15982 Processing chromosome C15982 INFO [2014-03-08 06:12:43,236] [Preprocessor.java:241] [main] Processing chromosome C15992 Processing chromosome C15992 INFO [2014-03-08 06:12:43,299] [Preprocessor.java:241] [main] Processing chromosome C15994 Processing chromosome C15994 INFO [2014-03-08 06:12:43,358] [Preprocessor.java:241] [main] Processing chromosome C16002 Processing chromosome C16002 INFO [2014-03-08 06:12:43,417] [Preprocessor.java:241] [main] Processing chromosome C16004 Processing chromosome C16004 INFO [2014-03-08 06:12:43,445] [Preprocessor.java:241] [main] Processing chromosome C16010 Processing chromosome C16010 INFO [2014-03-08 06:12:43,457] [Preprocessor.java:241] [main] Processing chromosome C16014 Processing chromosome C16014 INFO [2014-03-08 06:12:43,483] [Preprocessor.java:241] [main] Processing chromosome C16022 Processing chromosome C16022 INFO [2014-03-08 06:12:43,537] [Preprocessor.java:241] [main] Processing chromosome C16024 Processing chromosome C16024 INFO [2014-03-08 06:12:43,557] [Preprocessor.java:241] [main] Processing chromosome C16042 Processing chromosome C16042 INFO [2014-03-08 06:12:43,621] [Preprocessor.java:241] [main] Processing chromosome C16058 Processing chromosome C16058 INFO [2014-03-08 06:12:43,673] [Preprocessor.java:241] [main] Processing chromosome C16062 Processing chromosome C16062 INFO [2014-03-08 06:12:43,696] [Preprocessor.java:241] [main] Processing chromosome C16066 Processing chromosome C16066 INFO [2014-03-08 06:12:43,744] [Preprocessor.java:241] [main] Processing chromosome C16070 Processing chromosome C16070 INFO [2014-03-08 06:12:43,767] [Preprocessor.java:241] [main] Processing chromosome C16084 Processing chromosome C16084 INFO [2014-03-08 06:12:43,781] [Preprocessor.java:241] [main] Processing chromosome C16088 Processing chromosome C16088 INFO [2014-03-08 06:12:43,815] [Preprocessor.java:241] [main] Processing chromosome C16094 Processing chromosome C16094 INFO [2014-03-08 06:12:43,825] [Preprocessor.java:241] [main] Processing chromosome C16102 Processing chromosome C16102 INFO [2014-03-08 06:12:43,883] [Preprocessor.java:241] [main] Processing chromosome C16106 Processing chromosome C16106 INFO [2014-03-08 06:12:43,895] [Preprocessor.java:241] [main] Processing chromosome C16108 Processing chromosome C16108 INFO [2014-03-08 06:12:43,912] [Preprocessor.java:241] [main] Processing chromosome C16110 Processing chromosome C16110 INFO [2014-03-08 06:12:43,954] [Preprocessor.java:241] [main] Processing chromosome C16144 Processing chromosome C16144 INFO [2014-03-08 06:12:44,002] [Preprocessor.java:241] [main] Processing chromosome C1619 Processing chromosome C1619 INFO [2014-03-08 06:12:44,103] [Preprocessor.java:241] [main] Processing chromosome C16192 Processing chromosome C16192 INFO [2014-03-08 06:12:44,157] [Preprocessor.java:241] [main] Processing chromosome C16204 Processing chromosome C16204 INFO [2014-03-08 06:12:44,214] [Preprocessor.java:241] [main] Processing chromosome C16208 Processing chromosome C16208 INFO [2014-03-08 06:12:44,230] [Preprocessor.java:241] [main] Processing chromosome C16218 Processing chromosome C16218 INFO [2014-03-08 06:12:44,263] [Preprocessor.java:241] [main] Processing chromosome C1623 Processing chromosome C1623 INFO [2014-03-08 06:12:44,322] [Preprocessor.java:241] [main] Processing chromosome C16244 Processing chromosome C16244 INFO [2014-03-08 06:12:44,342] [Preprocessor.java:241] [main] Processing chromosome C16250 Processing chromosome C16250 INFO [2014-03-08 06:12:44,404] [Preprocessor.java:241] [main] Processing chromosome C16262 Processing chromosome C16262 INFO [2014-03-08 06:12:44,448] [Preprocessor.java:241] [main] Processing chromosome C16280 Processing chromosome C16280 INFO [2014-03-08 06:12:44,477] [Preprocessor.java:241] [main] Processing chromosome C16296 Processing chromosome C16296 INFO [2014-03-08 06:12:44,520] [Preprocessor.java:241] [main] Processing chromosome C16312 Processing chromosome C16312 INFO [2014-03-08 06:12:44,544] [Preprocessor.java:241] [main] Processing chromosome C16318 Processing chromosome C16318 INFO [2014-03-08 06:12:44,556] [Preprocessor.java:241] [main] Processing chromosome C16338 Processing chromosome C16338 INFO [2014-03-08 06:12:44,659] [Preprocessor.java:241] [main] Processing chromosome C16390 Processing chromosome C16390 INFO [2014-03-08 06:12:44,730] [Preprocessor.java:241] [main] Processing chromosome C16392 Processing chromosome C16392 INFO [2014-03-08 06:12:44,769] [Preprocessor.java:241] [main] Processing chromosome C16400 Processing chromosome C16400 INFO [2014-03-08 06:12:44,822] [Preprocessor.java:241] [main] Processing chromosome C16404 Processing chromosome C16404 INFO [2014-03-08 06:12:44,842] [Preprocessor.java:241] [main] Processing chromosome C16420 Processing chromosome C16420 INFO [2014-03-08 06:12:44,888] [Preprocessor.java:241] [main] Processing chromosome C16434 Processing chromosome C16434 INFO [2014-03-08 06:12:44,922] [Preprocessor.java:241] [main] Processing chromosome C16446 Processing chromosome C16446 INFO [2014-03-08 06:12:44,946] [Preprocessor.java:241] [main] Processing chromosome C16458 Processing chromosome C16458 INFO [2014-03-08 06:12:45,003] [Preprocessor.java:241] [main] Processing chromosome C16486 Processing chromosome C16486 INFO [2014-03-08 06:12:45,043] [Preprocessor.java:241] [main] Processing chromosome C16492 Processing chromosome C16492 INFO [2014-03-08 06:12:45,053] [Preprocessor.java:241] [main] Processing chromosome C16512 Processing chromosome C16512 INFO [2014-03-08 06:12:45,106] [Preprocessor.java:241] [main] Processing chromosome C16516 Processing chromosome C16516 INFO [2014-03-08 06:12:45,133] [Preprocessor.java:241] [main] Processing chromosome C16520 Processing chromosome C16520 INFO [2014-03-08 06:12:45,193] [Preprocessor.java:241] [main] Processing chromosome C16540 Processing chromosome C16540 INFO [2014-03-08 06:12:45,230] [Preprocessor.java:241] [main] Processing chromosome C16542 Processing chromosome C16542 INFO [2014-03-08 06:12:45,258] [Preprocessor.java:241] [main] Processing chromosome C16554 Processing chromosome C16554 INFO [2014-03-08 06:12:45,319] [Preprocessor.java:241] [main] Processing chromosome C16556 Processing chromosome C16556 INFO [2014-03-08 06:12:45,363] [Preprocessor.java:241] [main] Processing chromosome C16558 Processing chromosome C16558 INFO [2014-03-08 06:12:45,387] [Preprocessor.java:241] [main] Processing chromosome C16564 Processing chromosome C16564 INFO [2014-03-08 06:12:45,424] [Preprocessor.java:241] [main] Processing chromosome C16566 Processing chromosome C16566 INFO [2014-03-08 06:12:45,441] [Preprocessor.java:241] [main] Processing chromosome C16582 Processing chromosome C16582 INFO [2014-03-08 06:12:45,493] [Preprocessor.java:241] [main] Processing chromosome C16586 Processing chromosome C16586 INFO [2014-03-08 06:12:45,517] [Preprocessor.java:241] [main] Processing chromosome C16604 Processing chromosome C16604 INFO [2014-03-08 06:12:45,537] [Preprocessor.java:241] [main] Processing chromosome C16606 Processing chromosome C16606 INFO [2014-03-08 06:12:45,593] [Preprocessor.java:241] [main] Processing chromosome C16608 Processing chromosome C16608 INFO [2014-03-08 06:12:45,614] [Preprocessor.java:241] [main] Processing chromosome C1661 Processing chromosome C1661 INFO [2014-03-08 06:12:45,682] [Preprocessor.java:241] [main] Processing chromosome C16612 Processing chromosome C16612 INFO [2014-03-08 06:12:45,693] [Preprocessor.java:241] [main] Processing chromosome C16622 Processing chromosome C16622 INFO [2014-03-08 06:12:45,727] [Preprocessor.java:241] [main] Processing chromosome C16636 Processing chromosome C16636 INFO [2014-03-08 06:12:45,783] [Preprocessor.java:241] [main] Processing chromosome C16650 Processing chromosome C16650 INFO [2014-03-08 06:12:45,793] [Preprocessor.java:241] [main] Processing chromosome C16666 Processing chromosome C16666 INFO [2014-03-08 06:12:45,808] [Preprocessor.java:241] [main] Processing chromosome C16700 Processing chromosome C16700 INFO [2014-03-08 06:12:45,864] [Preprocessor.java:241] [main] Processing chromosome C16710 Processing chromosome C16710 INFO [2014-03-08 06:12:45,915] [Preprocessor.java:241] [main] Processing chromosome C16760 Processing chromosome C16760 INFO [2014-03-08 06:12:45,986] [Preprocessor.java:241] [main] Processing chromosome C16766 Processing chromosome C16766 INFO [2014-03-08 06:12:46,002] [Preprocessor.java:241] [main] Processing chromosome C16786 Processing chromosome C16786 INFO [2014-03-08 06:12:46,063] [Preprocessor.java:241] [main] Processing chromosome C16796 Processing chromosome C16796 INFO [2014-03-08 06:12:46,074] [Preprocessor.java:241] [main] Processing chromosome C16798 Processing chromosome C16798 INFO [2014-03-08 06:12:46,136] [Preprocessor.java:241] [main] Processing chromosome C16820 Processing chromosome C16820 INFO [2014-03-08 06:12:46,169] [Preprocessor.java:241] [main] Processing chromosome C16854 Processing chromosome C16854 INFO [2014-03-08 06:12:46,215] [Preprocessor.java:241] [main] Processing chromosome C16864 Processing chromosome C16864 INFO [2014-03-08 06:12:46,249] [Preprocessor.java:241] [main] Processing chromosome C16870 Processing chromosome C16870 INFO [2014-03-08 06:12:46,294] [Preprocessor.java:241] [main] Processing chromosome C16902 Processing chromosome C16902 INFO [2014-03-08 06:12:46,333] [Preprocessor.java:241] [main] Processing chromosome C16936 Processing chromosome C16936 INFO [2014-03-08 06:12:46,393] [Preprocessor.java:241] [main] Processing chromosome C16948 Processing chromosome C16948 INFO [2014-03-08 06:12:46,416] [Preprocessor.java:241] [main] Processing chromosome C16958 Processing chromosome C16958 INFO [2014-03-08 06:12:46,433] [Preprocessor.java:241] [main] Processing chromosome C16982 Processing chromosome C16982 INFO [2014-03-08 06:12:46,442] [Preprocessor.java:241] [main] Processing chromosome C17000 Processing chromosome C17000 INFO [2014-03-08 06:12:46,463] [Preprocessor.java:241] [main] Processing chromosome C17016 Processing chromosome C17016 INFO [2014-03-08 06:12:46,496] [Preprocessor.java:241] [main] Processing chromosome C17028 Processing chromosome C17028 INFO [2014-03-08 06:12:46,541] [Preprocessor.java:241] [main] Processing chromosome C17036 Processing chromosome C17036 INFO [2014-03-08 06:12:46,562] [Preprocessor.java:241] [main] Processing chromosome C17038 Processing chromosome C17038 INFO [2014-03-08 06:12:46,576] [Preprocessor.java:241] [main] Processing chromosome C17044 Processing chromosome C17044 INFO [2014-03-08 06:12:46,592] [Preprocessor.java:241] [main] Processing chromosome C17052 Processing chromosome C17052 INFO [2014-03-08 06:12:46,644] [Preprocessor.java:241] [main] Processing chromosome C17056 Processing chromosome C17056 INFO [2014-03-08 06:12:46,690] [Preprocessor.java:241] [main] Processing chromosome C17064 Processing chromosome C17064 INFO [2014-03-08 06:12:46,728] [Preprocessor.java:241] [main] Processing chromosome C17076 Processing chromosome C17076 INFO [2014-03-08 06:12:46,751] [Preprocessor.java:241] [main] Processing chromosome C17082 Processing chromosome C17082 INFO [2014-03-08 06:12:46,759] [Preprocessor.java:241] [main] Processing chromosome C17098 Processing chromosome C17098 INFO [2014-03-08 06:12:46,794] [Preprocessor.java:241] [main] Processing chromosome C17100 Processing chromosome C17100 INFO [2014-03-08 06:12:46,867] [Preprocessor.java:241] [main] Processing chromosome C17102 Processing chromosome C17102 INFO [2014-03-08 06:12:46,915] [Preprocessor.java:241] [main] Processing chromosome C17108 Processing chromosome C17108 INFO [2014-03-08 06:12:46,959] [Preprocessor.java:241] [main] Processing chromosome C17130 Processing chromosome C17130 INFO [2014-03-08 06:12:46,979] [Preprocessor.java:241] [main] Processing chromosome C17134 Processing chromosome C17134 INFO [2014-03-08 06:12:47,035] [Preprocessor.java:241] [main] Processing chromosome C17150 Processing chromosome C17150 INFO [2014-03-08 06:12:47,061] [Preprocessor.java:241] [main] Processing chromosome C17158 Processing chromosome C17158 INFO [2014-03-08 06:12:47,117] [Preprocessor.java:241] [main] Processing chromosome C17170 Processing chromosome C17170 INFO [2014-03-08 06:12:47,137] [Preprocessor.java:241] [main] Processing chromosome C17178 Processing chromosome C17178 INFO [2014-03-08 06:12:47,157] [Preprocessor.java:241] [main] Processing chromosome C17186 Processing chromosome C17186 INFO [2014-03-08 06:12:47,190] [Preprocessor.java:241] [main] Processing chromosome C17212 Processing chromosome C17212 INFO [2014-03-08 06:12:47,219] [Preprocessor.java:241] [main] Processing chromosome C17244 Processing chromosome C17244 INFO [2014-03-08 06:12:47,241] [Preprocessor.java:241] [main] Processing chromosome C17262 Processing chromosome C17262 INFO [2014-03-08 06:12:47,271] [Preprocessor.java:241] [main] Processing chromosome C17274 Processing chromosome C17274 INFO [2014-03-08 06:12:47,306] [Preprocessor.java:241] [main] Processing chromosome C17316 Processing chromosome C17316 INFO [2014-03-08 06:12:47,352] [Preprocessor.java:241] [main] Processing chromosome C17332 Processing chromosome C17332 INFO [2014-03-08 06:12:47,387] [Preprocessor.java:241] [main] Processing chromosome C17348 Processing chromosome C17348 INFO [2014-03-08 06:12:47,401] [Preprocessor.java:241] [main] Processing chromosome C17358 Processing chromosome C17358 INFO [2014-03-08 06:12:47,466] [Preprocessor.java:241] [main] Processing chromosome C17362 Processing chromosome C17362 INFO [2014-03-08 06:12:47,481] [Preprocessor.java:241] [main] Processing chromosome C17376 Processing chromosome C17376 INFO [2014-03-08 06:12:47,522] [Preprocessor.java:241] [main] Processing chromosome C17394 Processing chromosome C17394 INFO [2014-03-08 06:12:47,542] [Preprocessor.java:241] [main] Processing chromosome C17398 Processing chromosome C17398 INFO [2014-03-08 06:12:47,550] [Preprocessor.java:241] [main] Processing chromosome C17402 Processing chromosome C17402 INFO [2014-03-08 06:12:47,611] [Preprocessor.java:241] [main] Processing chromosome C17426 Processing chromosome C17426 INFO [2014-03-08 06:12:47,633] [Preprocessor.java:241] [main] Processing chromosome C17438 Processing chromosome C17438 INFO [2014-03-08 06:12:47,647] [Preprocessor.java:241] [main] Processing chromosome C17472 Processing chromosome C17472 INFO [2014-03-08 06:12:47,699] [Preprocessor.java:241] [main] Processing chromosome C17476 Processing chromosome C17476 INFO [2014-03-08 06:12:47,739] [Preprocessor.java:241] [main] Processing chromosome C17486 Processing chromosome C17486 INFO [2014-03-08 06:12:47,772] [Preprocessor.java:241] [main] Processing chromosome C17494 Processing chromosome C17494 INFO [2014-03-08 06:12:47,836] [Preprocessor.java:241] [main] Processing chromosome C17514 Processing chromosome C17514 INFO [2014-03-08 06:12:47,930] [Preprocessor.java:241] [main] Processing chromosome C17516 Processing chromosome C17516 INFO [2014-03-08 06:12:47,946] [Preprocessor.java:241] [main] Processing chromosome C17526 Processing chromosome C17526 INFO [2014-03-08 06:12:47,992] [Preprocessor.java:241] [main] Processing chromosome C17540 Processing chromosome C17540 INFO [2014-03-08 06:12:48,025] [Preprocessor.java:241] [main] Processing chromosome C17556 Processing chromosome C17556 INFO [2014-03-08 06:12:48,065] [Preprocessor.java:241] [main] Processing chromosome C17574 Processing chromosome C17574 INFO [2014-03-08 06:12:48,119] [Preprocessor.java:241] [main] Processing chromosome C17580 Processing chromosome C17580 INFO [2014-03-08 06:12:48,177] [Preprocessor.java:241] [main] Processing chromosome C17588 Processing chromosome C17588 INFO [2014-03-08 06:12:48,190] [Preprocessor.java:241] [main] Processing chromosome C17602 Processing chromosome C17602 INFO [2014-03-08 06:12:48,211] [Preprocessor.java:241] [main] Processing chromosome C17604 Processing chromosome C17604 INFO [2014-03-08 06:12:48,244] [Preprocessor.java:241] [main] Processing chromosome C17608 Processing chromosome C17608 INFO [2014-03-08 06:12:48,271] [Preprocessor.java:241] [main] Processing chromosome C17630 Processing chromosome C17630 INFO [2014-03-08 06:12:48,296] [Preprocessor.java:241] [main] Processing chromosome C17636 Processing chromosome C17636 INFO [2014-03-08 06:12:48,343] [Preprocessor.java:241] [main] Processing chromosome C17660 Processing chromosome C17660 INFO [2014-03-08 06:12:48,370] [Preprocessor.java:241] [main] Processing chromosome C17662 Processing chromosome C17662 INFO [2014-03-08 06:12:48,396] [Preprocessor.java:241] [main] Processing chromosome C17664 Processing chromosome C17664 INFO [2014-03-08 06:12:48,405] [Preprocessor.java:241] [main] Processing chromosome C17678 Processing chromosome C17678 INFO [2014-03-08 06:12:48,447] [Preprocessor.java:241] [main] Processing chromosome C17682 Processing chromosome C17682 INFO [2014-03-08 06:12:48,454] [Preprocessor.java:241] [main] Processing chromosome C17684 Processing chromosome C17684 INFO [2014-03-08 06:12:48,485] [Preprocessor.java:241] [main] Processing chromosome C17700 Processing chromosome C17700 INFO [2014-03-08 06:12:48,493] [Preprocessor.java:241] [main] Processing chromosome C17710 Processing chromosome C17710 INFO [2014-03-08 06:12:48,514] [Preprocessor.java:241] [main] Processing chromosome C17730 Processing chromosome C17730 INFO [2014-03-08 06:12:48,534] [Preprocessor.java:241] [main] Processing chromosome C17734 Processing chromosome C17734 INFO [2014-03-08 06:12:48,547] [Preprocessor.java:241] [main] Processing chromosome C17738 Processing chromosome C17738 INFO [2014-03-08 06:12:48,599] [Preprocessor.java:241] [main] Processing chromosome C17746 Processing chromosome C17746 INFO [2014-03-08 06:12:48,656] [Preprocessor.java:241] [main] Processing chromosome C17748 Processing chromosome C17748 INFO [2014-03-08 06:12:48,671] [Preprocessor.java:241] [main] Processing chromosome C17762 Processing chromosome C17762 INFO [2014-03-08 06:12:48,713] [Preprocessor.java:241] [main] Processing chromosome C17770 Processing chromosome C17770 INFO [2014-03-08 06:12:48,735] [Preprocessor.java:241] [main] Processing chromosome C17772 Processing chromosome C17772 INFO [2014-03-08 06:12:48,743] [Preprocessor.java:241] [main] Processing chromosome C17786 Processing chromosome C17786 INFO [2014-03-08 06:12:48,771] [Preprocessor.java:241] [main] Processing chromosome C17794 Processing chromosome C17794 INFO [2014-03-08 06:12:48,798] [Preprocessor.java:241] [main] Processing chromosome C1781 Processing chromosome C1781 INFO [2014-03-08 06:12:48,851] [Preprocessor.java:241] [main] Processing chromosome C17814 Processing chromosome C17814 INFO [2014-03-08 06:12:48,883] [Preprocessor.java:241] [main] Processing chromosome C17840 Processing chromosome C17840 INFO [2014-03-08 06:12:48,898] [Preprocessor.java:241] [main] Processing chromosome C17852 Processing chromosome C17852 INFO [2014-03-08 06:12:48,914] [Preprocessor.java:241] [main] Processing chromosome C17854 Processing chromosome C17854 INFO [2014-03-08 06:12:48,922] [Preprocessor.java:241] [main] Processing chromosome C17888 Processing chromosome C17888 INFO [2014-03-08 06:12:48,989] [Preprocessor.java:241] [main] Processing chromosome C1789 Processing chromosome C1789 INFO [2014-03-08 06:12:49,048] [Preprocessor.java:241] [main] Processing chromosome C17896 Processing chromosome C17896 INFO [2014-03-08 06:12:49,068] [Preprocessor.java:241] [main] Processing chromosome C17906 Processing chromosome C17906 INFO [2014-03-08 06:12:49,089] [Preprocessor.java:241] [main] Processing chromosome C17940 Processing chromosome C17940 INFO [2014-03-08 06:12:49,137] [Preprocessor.java:241] [main] Processing chromosome C17944 Processing chromosome C17944 INFO [2014-03-08 06:12:49,153] [Preprocessor.java:241] [main] Processing chromosome C17946 Processing chromosome C17946 INFO [2014-03-08 06:12:49,168] [Preprocessor.java:241] [main] Processing chromosome C1795 Processing chromosome C1795 INFO [2014-03-08 06:12:49,199] [Preprocessor.java:241] [main] Processing chromosome C17950 Processing chromosome C17950 INFO [2014-03-08 06:12:49,244] [Preprocessor.java:241] [main] Processing chromosome C17960 Processing chromosome C17960 INFO [2014-03-08 06:12:49,295] [Preprocessor.java:241] [main] Processing chromosome C17998 Processing chromosome C17998 INFO [2014-03-08 06:12:49,348] [Preprocessor.java:241] [main] Processing chromosome C18004 Processing chromosome C18004 INFO [2014-03-08 06:12:49,373] [Preprocessor.java:241] [main] Processing chromosome C18008 Processing chromosome C18008 INFO [2014-03-08 06:12:49,415] [Preprocessor.java:241] [main] Processing chromosome C18010 Processing chromosome C18010 INFO [2014-03-08 06:12:49,422] [Preprocessor.java:241] [main] Processing chromosome C18046 Processing chromosome C18046 INFO [2014-03-08 06:12:49,439] [Preprocessor.java:241] [main] Processing chromosome C18050 Processing chromosome C18050 INFO [2014-03-08 06:12:49,499] [Preprocessor.java:241] [main] Processing chromosome C18054 Processing chromosome C18054 INFO [2014-03-08 06:12:49,556] [Preprocessor.java:241] [main] Processing chromosome C181 Processing chromosome C181 INFO [2014-03-08 06:12:49,612] [Preprocessor.java:241] [main] Processing chromosome C18104 Processing chromosome C18104 INFO [2014-03-08 06:12:49,645] [Preprocessor.java:241] [main] Processing chromosome C18108 Processing chromosome C18108 INFO [2014-03-08 06:12:49,685] [Preprocessor.java:241] [main] Processing chromosome C18122 Processing chromosome C18122 INFO [2014-03-08 06:12:49,739] [Preprocessor.java:241] [main] Processing chromosome C18128 Processing chromosome C18128 INFO [2014-03-08 06:12:49,796] [Preprocessor.java:241] [main] Processing chromosome C18130 Processing chromosome C18130 INFO [2014-03-08 06:12:49,805] [Preprocessor.java:241] [main] Processing chromosome C18136 Processing chromosome C18136 INFO [2014-03-08 06:12:49,871] [Preprocessor.java:241] [main] Processing chromosome C18168 Processing chromosome C18168 INFO [2014-03-08 06:12:49,891] [Preprocessor.java:241] [main] Processing chromosome C18184 Processing chromosome C18184 INFO [2014-03-08 06:12:49,941] [Preprocessor.java:241] [main] Processing chromosome C18226 Processing chromosome C18226 INFO [2014-03-08 06:12:49,970] [Preprocessor.java:241] [main] Processing chromosome C18238 Processing chromosome C18238 INFO [2014-03-08 06:12:50,007] [Preprocessor.java:241] [main] Processing chromosome C18244 Processing chromosome C18244 INFO [2014-03-08 06:12:50,078] [Preprocessor.java:241] [main] Processing chromosome C18254 Processing chromosome C18254 INFO [2014-03-08 06:12:50,120] [Preprocessor.java:241] [main] Processing chromosome C18256 Processing chromosome C18256 INFO [2014-03-08 06:12:50,141] [Preprocessor.java:241] [main] Processing chromosome C18278 Processing chromosome C18278 INFO [2014-03-08 06:12:50,205] [Preprocessor.java:241] [main] Processing chromosome C18288 Processing chromosome C18288 INFO [2014-03-08 06:12:50,272] [Preprocessor.java:241] [main] Processing chromosome C18316 Processing chromosome C18316 INFO [2014-03-08 06:12:50,285] [Preprocessor.java:241] [main] Processing chromosome C1833 Processing chromosome C1833 INFO [2014-03-08 06:12:50,344] [Preprocessor.java:241] [main] Processing chromosome C18334 Processing chromosome C18334 INFO [2014-03-08 06:12:50,352] [Preprocessor.java:241] [main] Processing chromosome C18346 Processing chromosome C18346 INFO [2014-03-08 06:12:50,405] [Preprocessor.java:241] [main] Processing chromosome C18366 Processing chromosome C18366 INFO [2014-03-08 06:12:50,420] [Preprocessor.java:241] [main] Processing chromosome C18378 Processing chromosome C18378 INFO [2014-03-08 06:12:50,427] [Preprocessor.java:241] [main] Processing chromosome C18394 Processing chromosome C18394 INFO [2014-03-08 06:12:50,445] [Preprocessor.java:241] [main] Processing chromosome C18398 Processing chromosome C18398 INFO [2014-03-08 06:12:50,482] [Preprocessor.java:241] [main] Processing chromosome C18414 Processing chromosome C18414 INFO [2014-03-08 06:12:50,523] [Preprocessor.java:241] [main] Processing chromosome C18418 Processing chromosome C18418 INFO [2014-03-08 06:12:50,538] [Preprocessor.java:241] [main] Processing chromosome C18428 Processing chromosome C18428 INFO [2014-03-08 06:12:50,598] [Preprocessor.java:241] [main] Processing chromosome C1843 Processing chromosome C1843 INFO [2014-03-08 06:12:50,660] [Preprocessor.java:241] [main] Processing chromosome C18430 Processing chromosome C18430 INFO [2014-03-08 06:12:50,684] [Preprocessor.java:241] [main] Processing chromosome C18434 Processing chromosome C18434 INFO [2014-03-08 06:12:50,711] [Preprocessor.java:241] [main] Processing chromosome C18446 Processing chromosome C18446 INFO [2014-03-08 06:12:50,733] [Preprocessor.java:241] [main] Processing chromosome C18448 Processing chromosome C18448 INFO [2014-03-08 06:12:50,764] [Preprocessor.java:241] [main] Processing chromosome C18450 Processing chromosome C18450 INFO [2014-03-08 06:12:50,789] [Preprocessor.java:241] [main] Processing chromosome C18492 Processing chromosome C18492 INFO [2014-03-08 06:12:50,813] [Preprocessor.java:241] [main] Processing chromosome C18508 Processing chromosome C18508 INFO [2014-03-08 06:12:50,863] [Preprocessor.java:241] [main] Processing chromosome C18522 Processing chromosome C18522 INFO [2014-03-08 06:12:50,881] [Preprocessor.java:241] [main] Processing chromosome C18538 Processing chromosome C18538 INFO [2014-03-08 06:12:50,936] [Preprocessor.java:241] [main] Processing chromosome C18546 Processing chromosome C18546 INFO [2014-03-08 06:12:50,987] [Preprocessor.java:241] [main] Processing chromosome C18548 Processing chromosome C18548 INFO [2014-03-08 06:12:51,000] [Preprocessor.java:241] [main] Processing chromosome C18572 Processing chromosome C18572 INFO [2014-03-08 06:12:51,017] [Preprocessor.java:241] [main] Processing chromosome C18578 Processing chromosome C18578 INFO [2014-03-08 06:12:51,059] [Preprocessor.java:241] [main] Processing chromosome C18580 Processing chromosome C18580 INFO [2014-03-08 06:12:51,102] [Preprocessor.java:241] [main] Processing chromosome C18600 Processing chromosome C18600 INFO [2014-03-08 06:12:51,161] [Preprocessor.java:241] [main] Processing chromosome C1861 Processing chromosome C1861 INFO [2014-03-08 06:12:51,196] [Preprocessor.java:241] [main] Processing chromosome C18638 Processing chromosome C18638 INFO [2014-03-08 06:12:51,255] [Preprocessor.java:241] [main] Processing chromosome C18652 Processing chromosome C18652 INFO [2014-03-08 06:12:51,318] [Preprocessor.java:241] [main] Processing chromosome C18664 Processing chromosome C18664 INFO [2014-03-08 06:12:51,326] [Preprocessor.java:241] [main] Processing chromosome C18674 Processing chromosome C18674 INFO [2014-03-08 06:12:51,378] [Preprocessor.java:241] [main] Processing chromosome C18682 Processing chromosome C18682 INFO [2014-03-08 06:12:51,392] [Preprocessor.java:241] [main] Processing chromosome C18688 Processing chromosome C18688 INFO [2014-03-08 06:12:51,439] [Preprocessor.java:241] [main] Processing chromosome C18692 Processing chromosome C18692 INFO [2014-03-08 06:12:51,449] [Preprocessor.java:241] [main] Processing chromosome C18708 Processing chromosome C18708 INFO [2014-03-08 06:12:51,501] [Preprocessor.java:241] [main] Processing chromosome C18722 Processing chromosome C18722 INFO [2014-03-08 06:12:51,524] [Preprocessor.java:241] [main] Processing chromosome C18726 Processing chromosome C18726 INFO [2014-03-08 06:12:51,540] [Preprocessor.java:241] [main] Processing chromosome C18728 Processing chromosome C18728 INFO [2014-03-08 06:12:51,554] [Preprocessor.java:241] [main] Processing chromosome C18736 Processing chromosome C18736 INFO [2014-03-08 06:12:51,562] [Preprocessor.java:241] [main] Processing chromosome C18744 Processing chromosome C18744 INFO [2014-03-08 06:12:51,593] [Preprocessor.java:241] [main] Processing chromosome C18752 Processing chromosome C18752 INFO [2014-03-08 06:12:51,603] [Preprocessor.java:241] [main] Processing chromosome C18758 Processing chromosome C18758 INFO [2014-03-08 06:12:51,654] [Preprocessor.java:241] [main] Processing chromosome C18772 Processing chromosome C18772 INFO [2014-03-08 06:12:51,672] [Preprocessor.java:241] [main] Processing chromosome C18774 Processing chromosome C18774 INFO [2014-03-08 06:12:51,730] [Preprocessor.java:241] [main] Processing chromosome C18792 Processing chromosome C18792 INFO [2014-03-08 06:12:51,769] [Preprocessor.java:241] [main] Processing chromosome C18802 Processing chromosome C18802 INFO [2014-03-08 06:12:51,776] [Preprocessor.java:241] [main] Processing chromosome C18810 Processing chromosome C18810 INFO [2014-03-08 06:12:51,791] [Preprocessor.java:241] [main] Processing chromosome C18824 Processing chromosome C18824 INFO [2014-03-08 06:12:51,805] [Preprocessor.java:241] [main] Processing chromosome C18832 Processing chromosome C18832 INFO [2014-03-08 06:12:51,857] [Preprocessor.java:241] [main] Processing chromosome C18836 Processing chromosome C18836 INFO [2014-03-08 06:12:51,869] [Preprocessor.java:241] [main] Processing chromosome C18850 Processing chromosome C18850 INFO [2014-03-08 06:12:51,894] [Preprocessor.java:241] [main] Processing chromosome C18858 Processing chromosome C18858 INFO [2014-03-08 06:12:51,915] [Preprocessor.java:241] [main] Processing chromosome C18860 Processing chromosome C18860 INFO [2014-03-08 06:12:51,963] [Preprocessor.java:241] [main] Processing chromosome C18862 Processing chromosome C18862 INFO [2014-03-08 06:12:51,993] [Preprocessor.java:241] [main] Processing chromosome C1887 Processing chromosome C1887 INFO [2014-03-08 06:12:52,055] [Preprocessor.java:241] [main] Processing chromosome C18884 Processing chromosome C18884 INFO [2014-03-08 06:12:52,062] [Preprocessor.java:241] [main] Processing chromosome C18924 Processing chromosome C18924 INFO [2014-03-08 06:12:52,098] [Preprocessor.java:241] [main] Processing chromosome C18938 Processing chromosome C18938 INFO [2014-03-08 06:12:52,167] [Preprocessor.java:241] [main] Processing chromosome C18950 Processing chromosome C18950 INFO [2014-03-08 06:12:52,190] [Preprocessor.java:241] [main] Processing chromosome C18952 Processing chromosome C18952 INFO [2014-03-08 06:12:52,200] [Preprocessor.java:241] [main] Processing chromosome C18966 Processing chromosome C18966 INFO [2014-03-08 06:12:52,213] [Preprocessor.java:241] [main] Processing chromosome C18968 Processing chromosome C18968 INFO [2014-03-08 06:12:52,253] [Preprocessor.java:241] [main] Processing chromosome C18974 Processing chromosome C18974 INFO [2014-03-08 06:12:52,280] [Preprocessor.java:241] [main] Processing chromosome C18976 Processing chromosome C18976 INFO [2014-03-08 06:12:52,332] [Preprocessor.java:241] [main] Processing chromosome C18996 Processing chromosome C18996 INFO [2014-03-08 06:12:52,354] [Preprocessor.java:241] [main] Processing chromosome C19008 Processing chromosome C19008 INFO [2014-03-08 06:12:52,374] [Preprocessor.java:241] [main] Processing chromosome C19018 Processing chromosome C19018 INFO [2014-03-08 06:12:52,426] [Preprocessor.java:241] [main] Processing chromosome C19028 Processing chromosome C19028 INFO [2014-03-08 06:12:52,454] [Preprocessor.java:241] [main] Processing chromosome C19042 Processing chromosome C19042 INFO [2014-03-08 06:12:52,512] [Preprocessor.java:241] [main] Processing chromosome C19058 Processing chromosome C19058 INFO [2014-03-08 06:12:52,525] [Preprocessor.java:241] [main] Processing chromosome C19072 Processing chromosome C19072 INFO [2014-03-08 06:12:52,549] [Preprocessor.java:241] [main] Processing chromosome C19082 Processing chromosome C19082 INFO [2014-03-08 06:12:52,571] [Preprocessor.java:241] [main] Processing chromosome C19094 Processing chromosome C19094 INFO [2014-03-08 06:12:52,578] [Preprocessor.java:241] [main] Processing chromosome C19100 Processing chromosome C19100 INFO [2014-03-08 06:12:52,627] [Preprocessor.java:241] [main] Processing chromosome C19108 Processing chromosome C19108 INFO [2014-03-08 06:12:52,674] [Preprocessor.java:241] [main] Processing chromosome C19112 Processing chromosome C19112 INFO [2014-03-08 06:12:52,686] [Preprocessor.java:241] [main] Processing chromosome C19122 Processing chromosome C19122 INFO [2014-03-08 06:12:52,698] [Preprocessor.java:241] [main] Processing chromosome C19142 Processing chromosome C19142 INFO [2014-03-08 06:12:52,731] [Preprocessor.java:241] [main] Processing chromosome C19148 Processing chromosome C19148 INFO [2014-03-08 06:12:52,785] [Preprocessor.java:241] [main] Processing chromosome C19160 Processing chromosome C19160 INFO [2014-03-08 06:12:52,792] [Preprocessor.java:241] [main] Processing chromosome C19162 Processing chromosome C19162 INFO [2014-03-08 06:12:52,805] [Preprocessor.java:241] [main] Processing chromosome C19178 Processing chromosome C19178 INFO [2014-03-08 06:12:52,821] [Preprocessor.java:241] [main] Processing chromosome C19194 Processing chromosome C19194 INFO [2014-03-08 06:12:52,874] [Preprocessor.java:241] [main] Processing chromosome C19200 Processing chromosome C19200 INFO [2014-03-08 06:12:52,915] [Preprocessor.java:241] [main] Processing chromosome C19204 Processing chromosome C19204 INFO [2014-03-08 06:12:52,941] [Preprocessor.java:241] [main] Processing chromosome C19224 Processing chromosome C19224 INFO [2014-03-08 06:12:52,966] [Preprocessor.java:241] [main] Processing chromosome C19228 Processing chromosome C19228 INFO [2014-03-08 06:12:53,014] [Preprocessor.java:241] [main] Processing chromosome C19242 Processing chromosome C19242 INFO [2014-03-08 06:12:53,061] [Preprocessor.java:241] [main] Processing chromosome C19250 Processing chromosome C19250 INFO [2014-03-08 06:12:53,097] [Preprocessor.java:241] [main] Processing chromosome C19260 Processing chromosome C19260 INFO [2014-03-08 06:12:53,109] [Preprocessor.java:241] [main] Processing chromosome C19270 Processing chromosome C19270 INFO [2014-03-08 06:12:53,120] [Preprocessor.java:241] [main] Processing chromosome C19276 Processing chromosome C19276 INFO [2014-03-08 06:12:53,134] [Preprocessor.java:241] [main] Processing chromosome C19288 Processing chromosome C19288 INFO [2014-03-08 06:12:53,182] [Preprocessor.java:241] [main] Processing chromosome C19298 Processing chromosome C19298 INFO [2014-03-08 06:12:53,193] [Preprocessor.java:241] [main] Processing chromosome C19300 Processing chromosome C19300 INFO [2014-03-08 06:12:53,245] [Preprocessor.java:241] [main] Processing chromosome C19308 Processing chromosome C19308 INFO [2014-03-08 06:12:53,275] [Preprocessor.java:241] [main] Processing chromosome C19314 Processing chromosome C19314 INFO [2014-03-08 06:12:53,316] [Preprocessor.java:241] [main] Processing chromosome C19336 Processing chromosome C19336 INFO [2014-03-08 06:12:53,336] [Preprocessor.java:241] [main] Processing chromosome C19340 Processing chromosome C19340 INFO [2014-03-08 06:12:53,394] [Preprocessor.java:241] [main] Processing chromosome C19344 Processing chromosome C19344 INFO [2014-03-08 06:12:53,413] [Preprocessor.java:241] [main] Processing chromosome C19348 Processing chromosome C19348 INFO [2014-03-08 06:12:53,448] [Preprocessor.java:241] [main] Processing chromosome C19356 Processing chromosome C19356 INFO [2014-03-08 06:12:53,489] [Preprocessor.java:241] [main] Processing chromosome C19382 Processing chromosome C19382 INFO [2014-03-08 06:12:53,532] [Preprocessor.java:241] [main] Processing chromosome C19386 Processing chromosome C19386 INFO [2014-03-08 06:12:53,566] [Preprocessor.java:241] [main] Processing chromosome C19392 Processing chromosome C19392 INFO [2014-03-08 06:12:53,608] [Preprocessor.java:241] [main] Processing chromosome C19396 Processing chromosome C19396 INFO [2014-03-08 06:12:53,639] [Preprocessor.java:241] [main] Processing chromosome C19410 Processing chromosome C19410 INFO [2014-03-08 06:12:53,669] [Preprocessor.java:241] [main] Processing chromosome C19416 Processing chromosome C19416 INFO [2014-03-08 06:12:53,705] [Preprocessor.java:241] [main] Processing chromosome C19450 Processing chromosome C19450 INFO [2014-03-08 06:12:53,711] [Preprocessor.java:241] [main] Processing chromosome C19460 Processing chromosome C19460 INFO [2014-03-08 06:12:53,729] [Preprocessor.java:241] [main] Processing chromosome C19472 Processing chromosome C19472 INFO [2014-03-08 06:12:53,770] [Preprocessor.java:241] [main] Processing chromosome C19480 Processing chromosome C19480 INFO [2014-03-08 06:12:53,794] [Preprocessor.java:241] [main] Processing chromosome C19494 Processing chromosome C19494 INFO [2014-03-08 06:12:53,837] [Preprocessor.java:241] [main] Processing chromosome C19496 Processing chromosome C19496 INFO [2014-03-08 06:12:53,861] [Preprocessor.java:241] [main] Processing chromosome C19500 Processing chromosome C19500 INFO [2014-03-08 06:12:53,878] [Preprocessor.java:241] [main] Processing chromosome C19510 Processing chromosome C19510 INFO [2014-03-08 06:12:53,901] [Preprocessor.java:241] [main] Processing chromosome C19516 Processing chromosome C19516 INFO [2014-03-08 06:12:53,925] [Preprocessor.java:241] [main] Processing chromosome C19522 Processing chromosome C19522 INFO [2014-03-08 06:12:53,942] [Preprocessor.java:241] [main] Processing chromosome C19532 Processing chromosome C19532 INFO [2014-03-08 06:12:53,980] [Preprocessor.java:241] [main] Processing chromosome C19556 Processing chromosome C19556 INFO [2014-03-08 06:12:54,007] [Preprocessor.java:241] [main] Processing chromosome C19560 Processing chromosome C19560 INFO [2014-03-08 06:12:54,013] [Preprocessor.java:241] [main] Processing chromosome C19570 Processing chromosome C19570 INFO [2014-03-08 06:12:54,040] [Preprocessor.java:241] [main] Processing chromosome C19572 Processing chromosome C19572 INFO [2014-03-08 06:12:54,072] [Preprocessor.java:241] [main] Processing chromosome C19576 Processing chromosome C19576 INFO [2014-03-08 06:12:54,085] [Preprocessor.java:241] [main] Processing chromosome C19582 Processing chromosome C19582 INFO [2014-03-08 06:12:54,138] [Preprocessor.java:241] [main] Processing chromosome C19584 Processing chromosome C19584 INFO [2014-03-08 06:12:54,144] [Preprocessor.java:241] [main] Processing chromosome C19586 Processing chromosome C19586 INFO [2014-03-08 06:12:54,190] [Preprocessor.java:241] [main] Processing chromosome C19594 Processing chromosome C19594 INFO [2014-03-08 06:12:54,204] [Preprocessor.java:241] [main] Processing chromosome C19600 Processing chromosome C19600 INFO [2014-03-08 06:12:54,212] [Preprocessor.java:241] [main] Processing chromosome C19602 Processing chromosome C19602 INFO [2014-03-08 06:12:54,244] [Preprocessor.java:241] [main] Processing chromosome C19612 Processing chromosome C19612 INFO [2014-03-08 06:12:54,293] [Preprocessor.java:241] [main] Processing chromosome C19622 Processing chromosome C19622 INFO [2014-03-08 06:12:54,337] [Preprocessor.java:241] [main] Processing chromosome C19626 Processing chromosome C19626 INFO [2014-03-08 06:12:54,371] [Preprocessor.java:241] [main] Processing chromosome C19628 Processing chromosome C19628 INFO [2014-03-08 06:12:54,377] [Preprocessor.java:241] [main] Processing chromosome C19630 Processing chromosome C19630 INFO [2014-03-08 06:12:54,428] [Preprocessor.java:241] [main] Processing chromosome C19636 Processing chromosome C19636 INFO [2014-03-08 06:12:54,456] [Preprocessor.java:241] [main] Processing chromosome C19642 Processing chromosome C19642 INFO [2014-03-08 06:12:54,508] [Preprocessor.java:241] [main] Processing chromosome C19648 Processing chromosome C19648 INFO [2014-03-08 06:12:54,552] [Preprocessor.java:241] [main] Processing chromosome C19658 Processing chromosome C19658 INFO [2014-03-08 06:12:54,600] [Preprocessor.java:241] [main] Processing chromosome C19660 Processing chromosome C19660 INFO [2014-03-08 06:12:54,638] [Preprocessor.java:241] [main] Processing chromosome C19672 Processing chromosome C19672 INFO [2014-03-08 06:12:54,675] [Preprocessor.java:241] [main] Processing chromosome C19680 Processing chromosome C19680 INFO [2014-03-08 06:12:54,721] [Preprocessor.java:241] [main] Processing chromosome C19682 Processing chromosome C19682 INFO [2014-03-08 06:12:54,766] [Preprocessor.java:241] [main] Processing chromosome C19686 Processing chromosome C19686 INFO [2014-03-08 06:12:54,782] [Preprocessor.java:241] [main] Processing chromosome C19688 Processing chromosome C19688 INFO [2014-03-08 06:12:54,787] [Preprocessor.java:241] [main] Processing chromosome C19702 Processing chromosome C19702 INFO [2014-03-08 06:12:54,804] [Preprocessor.java:241] [main] Processing chromosome C19708 Processing chromosome C19708 INFO [2014-03-08 06:12:54,817] [Preprocessor.java:241] [main] Processing chromosome C19718 Processing chromosome C19718 INFO [2014-03-08 06:12:54,853] [Preprocessor.java:241] [main] Processing chromosome C19722 Processing chromosome C19722 INFO [2014-03-08 06:12:54,892] [Preprocessor.java:241] [main] Processing chromosome C19750 Processing chromosome C19750 INFO [2014-03-08 06:12:54,957] [Preprocessor.java:241] [main] Processing chromosome C19764 Processing chromosome C19764 INFO [2014-03-08 06:12:54,993] [Preprocessor.java:241] [main] Processing chromosome C19768 Processing chromosome C19768 INFO [2014-03-08 06:12:55,002] [Preprocessor.java:241] [main] Processing chromosome C19770 Processing chromosome C19770 INFO [2014-03-08 06:12:55,070] [Preprocessor.java:241] [main] Processing chromosome C19774 Processing chromosome C19774 INFO [2014-03-08 06:12:55,080] [Preprocessor.java:241] [main] Processing chromosome C19776 Processing chromosome C19776 INFO [2014-03-08 06:12:55,106] [Preprocessor.java:241] [main] Processing chromosome C19780 Processing chromosome C19780 INFO [2014-03-08 06:12:55,148] [Preprocessor.java:241] [main] Processing chromosome C19782 Processing chromosome C19782 INFO [2014-03-08 06:12:55,179] [Preprocessor.java:241] [main] Processing chromosome C19784 Processing chromosome C19784 INFO [2014-03-08 06:12:55,219] [Preprocessor.java:241] [main] Processing chromosome C19786 Processing chromosome C19786 INFO [2014-03-08 06:12:55,230] [Preprocessor.java:241] [main] Processing chromosome C19812 Processing chromosome C19812 INFO [2014-03-08 06:12:55,257] [Preprocessor.java:241] [main] Processing chromosome C19814 Processing chromosome C19814 INFO [2014-03-08 06:12:55,265] [Preprocessor.java:241] [main] Processing chromosome C19822 Processing chromosome C19822 INFO [2014-03-08 06:12:55,284] [Preprocessor.java:241] [main] Processing chromosome C19824 Processing chromosome C19824 INFO [2014-03-08 06:12:55,319] [Preprocessor.java:241] [main] Processing chromosome C19830 Processing chromosome C19830 INFO [2014-03-08 06:12:55,361] [Preprocessor.java:241] [main] Processing chromosome C19838 Processing chromosome C19838 INFO [2014-03-08 06:12:55,384] [Preprocessor.java:241] [main] Processing chromosome C19842 Processing chromosome C19842 INFO [2014-03-08 06:12:55,443] [Preprocessor.java:241] [main] Processing chromosome C19850 Processing chromosome C19850 INFO [2014-03-08 06:12:55,461] [Preprocessor.java:241] [main] Processing chromosome C19868 Processing chromosome C19868 INFO [2014-03-08 06:12:55,487] [Preprocessor.java:241] [main] Processing chromosome C19902 Processing chromosome C19902 INFO [2014-03-08 06:12:55,545] [Preprocessor.java:241] [main] Processing chromosome C19914 Processing chromosome C19914 INFO [2014-03-08 06:12:55,555] [Preprocessor.java:241] [main] Processing chromosome C19916 Processing chromosome C19916 INFO [2014-03-08 06:12:55,585] [Preprocessor.java:241] [main] Processing chromosome C19962 Processing chromosome C19962 INFO [2014-03-08 06:12:55,618] [Preprocessor.java:241] [main] Processing chromosome C19966 Processing chromosome C19966 INFO [2014-03-08 06:12:55,623] [Preprocessor.java:241] [main] Processing chromosome C19968 Processing chromosome C19968 INFO [2014-03-08 06:12:55,640] [Preprocessor.java:241] [main] Processing chromosome C19972 Processing chromosome C19972 INFO [2014-03-08 06:12:55,680] [Preprocessor.java:241] [main] Processing chromosome C19974 Processing chromosome C19974 INFO [2014-03-08 06:12:55,688] [Preprocessor.java:241] [main] Processing chromosome C19976 Processing chromosome C19976 INFO [2014-03-08 06:12:55,695] [Preprocessor.java:241] [main] Processing chromosome C19984 Processing chromosome C19984 INFO [2014-03-08 06:12:55,751] [Preprocessor.java:241] [main] Processing chromosome C19990 Processing chromosome C19990 INFO [2014-03-08 06:12:55,814] [Preprocessor.java:241] [main] Processing chromosome C19996 Processing chromosome C19996 INFO [2014-03-08 06:12:55,838] [Preprocessor.java:241] [main] Processing chromosome C20004 Processing chromosome C20004 INFO [2014-03-08 06:12:55,856] [Preprocessor.java:241] [main] Processing chromosome C20010 Processing chromosome C20010 INFO [2014-03-08 06:12:55,863] [Preprocessor.java:241] [main] Processing chromosome C20012 Processing chromosome C20012 INFO [2014-03-08 06:12:55,876] [Preprocessor.java:241] [main] Processing chromosome C20014 Processing chromosome C20014 INFO [2014-03-08 06:12:55,903] [Preprocessor.java:241] [main] Processing chromosome C20018 Processing chromosome C20018 INFO [2014-03-08 06:12:55,960] [Preprocessor.java:241] [main] Processing chromosome C20052 Processing chromosome C20052 INFO [2014-03-08 06:12:55,974] [Preprocessor.java:241] [main] Processing chromosome C20054 Processing chromosome C20054 INFO [2014-03-08 06:12:56,000] [Preprocessor.java:241] [main] Processing chromosome C20056 Processing chromosome C20056 INFO [2014-03-08 06:12:56,062] [Preprocessor.java:241] [main] Processing chromosome C20060 Processing chromosome C20060 INFO [2014-03-08 06:12:56,085] [Preprocessor.java:241] [main] Processing chromosome C20080 Processing chromosome C20080 INFO [2014-03-08 06:12:56,096] [Preprocessor.java:241] [main] Processing chromosome C20084 Processing chromosome C20084 INFO [2014-03-08 06:12:56,111] [Preprocessor.java:241] [main] Processing chromosome C20088 Processing chromosome C20088 INFO [2014-03-08 06:12:56,148] [Preprocessor.java:241] [main] Processing chromosome C20090 Processing chromosome C20090 INFO [2014-03-08 06:12:56,187] [Preprocessor.java:241] [main] Processing chromosome C20094 Processing chromosome C20094 INFO [2014-03-08 06:12:56,211] [Preprocessor.java:241] [main] Processing chromosome C20102 Processing chromosome C20102 INFO [2014-03-08 06:12:56,252] [Preprocessor.java:241] [main] Processing chromosome C20104 Processing chromosome C20104 INFO [2014-03-08 06:12:56,258] [Preprocessor.java:241] [main] Processing chromosome C20108 Processing chromosome C20108 INFO [2014-03-08 06:12:56,279] [Preprocessor.java:241] [main] Processing chromosome C2011 Processing chromosome C2011 INFO [2014-03-08 06:12:56,309] [Preprocessor.java:241] [main] Processing chromosome C20116 Processing chromosome C20116 INFO [2014-03-08 06:12:56,337] [Preprocessor.java:241] [main] Processing chromosome C2013 Processing chromosome C2013 INFO [2014-03-08 06:12:56,390] [Preprocessor.java:241] [main] Processing chromosome C20170 Processing chromosome C20170 INFO [2014-03-08 06:12:56,419] [Preprocessor.java:241] [main] Processing chromosome C20174 Processing chromosome C20174 INFO [2014-03-08 06:12:56,437] [Preprocessor.java:241] [main] Processing chromosome C20176 Processing chromosome C20176 INFO [2014-03-08 06:12:56,460] [Preprocessor.java:241] [main] Processing chromosome C20186 Processing chromosome C20186 INFO [2014-03-08 06:12:56,475] [Preprocessor.java:241] [main] Processing chromosome C20188 Processing chromosome C20188 INFO [2014-03-08 06:12:56,520] [Preprocessor.java:241] [main] Processing chromosome C20192 Processing chromosome C20192 INFO [2014-03-08 06:12:56,548] [Preprocessor.java:241] [main] Processing chromosome C20198 Processing chromosome C20198 INFO [2014-03-08 06:12:56,598] [Preprocessor.java:241] [main] Processing chromosome C20210 Processing chromosome C20210 INFO [2014-03-08 06:12:56,614] [Preprocessor.java:241] [main] Processing chromosome C20224 Processing chromosome C20224 INFO [2014-03-08 06:12:56,640] [Preprocessor.java:241] [main] Processing chromosome C20238 Processing chromosome C20238 INFO [2014-03-08 06:12:56,706] [Preprocessor.java:241] [main] Processing chromosome C20244 Processing chromosome C20244 INFO [2014-03-08 06:12:56,753] [Preprocessor.java:241] [main] Processing chromosome C20248 Processing chromosome C20248 INFO [2014-03-08 06:12:56,773] [Preprocessor.java:241] [main] Processing chromosome C20250 Processing chromosome C20250 INFO [2014-03-08 06:12:56,779] [Preprocessor.java:241] [main] Processing chromosome C20252 Processing chromosome C20252 INFO [2014-03-08 06:12:56,798] [Preprocessor.java:241] [main] Processing chromosome C20256 Processing chromosome C20256 INFO [2014-03-08 06:12:56,814] [Preprocessor.java:241] [main] Processing chromosome C20262 Processing chromosome C20262 INFO [2014-03-08 06:12:56,867] [Preprocessor.java:241] [main] Processing chromosome C20282 Processing chromosome C20282 INFO [2014-03-08 06:12:56,920] [Preprocessor.java:241] [main] Processing chromosome C20284 Processing chromosome C20284 INFO [2014-03-08 06:12:56,938] [Preprocessor.java:241] [main] Processing chromosome C20294 Processing chromosome C20294 INFO [2014-03-08 06:12:56,960] [Preprocessor.java:241] [main] Processing chromosome C20298 Processing chromosome C20298 INFO [2014-03-08 06:12:56,991] [Preprocessor.java:241] [main] Processing chromosome C20300 Processing chromosome C20300 INFO [2014-03-08 06:12:57,008] [Preprocessor.java:241] [main] Processing chromosome C20316 Processing chromosome C20316 INFO [2014-03-08 06:12:57,059] [Preprocessor.java:241] [main] Processing chromosome C20318 Processing chromosome C20318 INFO [2014-03-08 06:12:57,073] [Preprocessor.java:241] [main] Processing chromosome C20322 Processing chromosome C20322 INFO [2014-03-08 06:12:57,127] [Preprocessor.java:241] [main] Processing chromosome C20332 Processing chromosome C20332 INFO [2014-03-08 06:12:57,177] [Preprocessor.java:241] [main] Processing chromosome C20334 Processing chromosome C20334 INFO [2014-03-08 06:12:57,208] [Preprocessor.java:241] [main] Processing chromosome C20350 Processing chromosome C20350 INFO [2014-03-08 06:12:57,255] [Preprocessor.java:241] [main] Processing chromosome C20360 Processing chromosome C20360 INFO [2014-03-08 06:12:57,272] [Preprocessor.java:241] [main] Processing chromosome C20364 Processing chromosome C20364 INFO [2014-03-08 06:12:57,318] [Preprocessor.java:241] [main] Processing chromosome C20366 Processing chromosome C20366 INFO [2014-03-08 06:12:57,350] [Preprocessor.java:241] [main] Processing chromosome C20368 Processing chromosome C20368 INFO [2014-03-08 06:12:57,396] [Preprocessor.java:241] [main] Processing chromosome C20374 Processing chromosome C20374 INFO [2014-03-08 06:12:57,411] [Preprocessor.java:241] [main] Processing chromosome C20378 Processing chromosome C20378 INFO [2014-03-08 06:12:57,419] [Preprocessor.java:241] [main] Processing chromosome C20380 Processing chromosome C20380 INFO [2014-03-08 06:12:57,423] [Preprocessor.java:241] [main] Processing chromosome C20390 Processing chromosome C20390 INFO [2014-03-08 06:12:57,471] [Preprocessor.java:241] [main] Processing chromosome C20392 Processing chromosome C20392 INFO [2014-03-08 06:12:57,500] [Preprocessor.java:241] [main] Processing chromosome C20398 Processing chromosome C20398 INFO [2014-03-08 06:12:57,516] [Preprocessor.java:241] [main] Processing chromosome C20400 Processing chromosome C20400 INFO [2014-03-08 06:12:57,560] [Preprocessor.java:241] [main] Processing chromosome C20406 Processing chromosome C20406 INFO [2014-03-08 06:12:57,567] [Preprocessor.java:241] [main] Processing chromosome C2041 Processing chromosome C2041 INFO [2014-03-08 06:12:57,600] [Preprocessor.java:241] [main] Processing chromosome C20410 Processing chromosome C20410 INFO [2014-03-08 06:12:57,632] [Preprocessor.java:241] [main] Processing chromosome C20412 Processing chromosome C20412 INFO [2014-03-08 06:12:57,663] [Preprocessor.java:241] [main] Processing chromosome C20422 Processing chromosome C20422 INFO [2014-03-08 06:12:57,695] [Preprocessor.java:241] [main] Processing chromosome C20426 Processing chromosome C20426 INFO [2014-03-08 06:12:57,753] [Preprocessor.java:241] [main] Processing chromosome C20430 Processing chromosome C20430 INFO [2014-03-08 06:12:57,795] [Preprocessor.java:241] [main] Processing chromosome C20434 Processing chromosome C20434 INFO [2014-03-08 06:12:57,809] [Preprocessor.java:241] [main] Processing chromosome C20446 Processing chromosome C20446 INFO [2014-03-08 06:12:57,843] [Preprocessor.java:241] [main] Processing chromosome C20450 Processing chromosome C20450 INFO [2014-03-08 06:12:57,866] [Preprocessor.java:241] [main] Processing chromosome C20462 Processing chromosome C20462 INFO [2014-03-08 06:12:57,898] [Preprocessor.java:241] [main] Processing chromosome C20470 Processing chromosome C20470 INFO [2014-03-08 06:12:57,936] [Preprocessor.java:241] [main] Processing chromosome C20474 Processing chromosome C20474 INFO [2014-03-08 06:12:57,965] [Preprocessor.java:241] [main] Processing chromosome C20476 Processing chromosome C20476 INFO [2014-03-08 06:12:57,996] [Preprocessor.java:241] [main] Processing chromosome C20478 Processing chromosome C20478 INFO [2014-03-08 06:12:58,001] [Preprocessor.java:241] [main] Processing chromosome C20480 Processing chromosome C20480 INFO [2014-03-08 06:12:58,055] [Preprocessor.java:241] [main] Processing chromosome C20482 Processing chromosome C20482 INFO [2014-03-08 06:12:58,121] [Preprocessor.java:241] [main] Processing chromosome C20484 Processing chromosome C20484 INFO [2014-03-08 06:12:58,156] [Preprocessor.java:241] [main] Processing chromosome C20522 Processing chromosome C20522 INFO [2014-03-08 06:12:58,187] [Preprocessor.java:241] [main] Processing chromosome C20524 Processing chromosome C20524 INFO [2014-03-08 06:12:58,234] [Preprocessor.java:241] [main] Processing chromosome C20532 Processing chromosome C20532 INFO [2014-03-08 06:12:58,249] [Preprocessor.java:241] [main] Processing chromosome C20538 Processing chromosome C20538 INFO [2014-03-08 06:12:58,268] [Preprocessor.java:241] [main] Processing chromosome C20544 Processing chromosome C20544 INFO [2014-03-08 06:12:58,309] [Preprocessor.java:241] [main] Processing chromosome C20546 Processing chromosome C20546 INFO [2014-03-08 06:12:58,325] [Preprocessor.java:241] [main] Processing chromosome C20550 Processing chromosome C20550 INFO [2014-03-08 06:12:58,360] [Preprocessor.java:241] [main] Processing chromosome C20552 Processing chromosome C20552 INFO [2014-03-08 06:12:58,396] [Preprocessor.java:241] [main] Processing chromosome C20574 Processing chromosome C20574 INFO [2014-03-08 06:12:58,405] [Preprocessor.java:241] [main] Processing chromosome C20576 Processing chromosome C20576 INFO [2014-03-08 06:12:58,452] [Preprocessor.java:241] [main] Processing chromosome C20578 Processing chromosome C20578 INFO [2014-03-08 06:12:58,473] [Preprocessor.java:241] [main] Processing chromosome C20582 Processing chromosome C20582 INFO [2014-03-08 06:12:58,512] [Preprocessor.java:241] [main] Processing chromosome C20586 Processing chromosome C20586 INFO [2014-03-08 06:12:58,558] [Preprocessor.java:241] [main] Processing chromosome C20594 Processing chromosome C20594 INFO [2014-03-08 06:12:58,601] [Preprocessor.java:241] [main] Processing chromosome C20610 Processing chromosome C20610 INFO [2014-03-08 06:12:58,618] [Preprocessor.java:241] [main] Processing chromosome C20614 Processing chromosome C20614 INFO [2014-03-08 06:12:58,684] [Preprocessor.java:241] [main] Processing chromosome C20626 Processing chromosome C20626 INFO [2014-03-08 06:12:58,742] [Preprocessor.java:241] [main] Processing chromosome C20630 Processing chromosome C20630 INFO [2014-03-08 06:12:58,769] [Preprocessor.java:241] [main] Processing chromosome C20636 Processing chromosome C20636 INFO [2014-03-08 06:12:58,774] [Preprocessor.java:241] [main] Processing chromosome C20640 Processing chromosome C20640 INFO [2014-03-08 06:12:58,789] [Preprocessor.java:241] [main] Processing chromosome C20642 Processing chromosome C20642 INFO [2014-03-08 06:12:58,813] [Preprocessor.java:241] [main] Processing chromosome C20644 Processing chromosome C20644 INFO [2014-03-08 06:12:58,832] [Preprocessor.java:241] [main] Processing chromosome C20646 Processing chromosome C20646 INFO [2014-03-08 06:12:58,861] [Preprocessor.java:241] [main] Processing chromosome C20652 Processing chromosome C20652 INFO [2014-03-08 06:12:58,874] [Preprocessor.java:241] [main] Processing chromosome C20654 Processing chromosome C20654 INFO [2014-03-08 06:12:58,895] [Preprocessor.java:241] [main] Processing chromosome C20664 Processing chromosome C20664 INFO [2014-03-08 06:12:58,917] [Preprocessor.java:241] [main] Processing chromosome C2067 Processing chromosome C2067 INFO [2014-03-08 06:12:58,974] [Preprocessor.java:241] [main] Processing chromosome C20676 Processing chromosome C20676 INFO [2014-03-08 06:12:58,980] [Preprocessor.java:241] [main] Processing chromosome C20680 Processing chromosome C20680 INFO [2014-03-08 06:12:59,000] [Preprocessor.java:241] [main] Processing chromosome C20688 Processing chromosome C20688 INFO [2014-03-08 06:12:59,029] [Preprocessor.java:241] [main] Processing chromosome C20692 Processing chromosome C20692 INFO [2014-03-08 06:12:59,054] [Preprocessor.java:241] [main] Processing chromosome C20694 Processing chromosome C20694 INFO [2014-03-08 06:12:59,076] [Preprocessor.java:241] [main] Processing chromosome C20704 Processing chromosome C20704 INFO [2014-03-08 06:12:59,116] [Preprocessor.java:241] [main] Processing chromosome C2071 Processing chromosome C2071 INFO [2014-03-08 06:12:59,175] [Preprocessor.java:241] [main] Processing chromosome C20716 Processing chromosome C20716 INFO [2014-03-08 06:12:59,189] [Preprocessor.java:241] [main] Processing chromosome C20720 Processing chromosome C20720 INFO [2014-03-08 06:12:59,202] [Preprocessor.java:241] [main] Processing chromosome C20740 Processing chromosome C20740 INFO [2014-03-08 06:12:59,232] [Preprocessor.java:241] [main] Processing chromosome C20754 Processing chromosome C20754 INFO [2014-03-08 06:12:59,264] [Preprocessor.java:241] [main] Processing chromosome C20756 Processing chromosome C20756 INFO [2014-03-08 06:12:59,321] [Preprocessor.java:241] [main] Processing chromosome C20760 Processing chromosome C20760 INFO [2014-03-08 06:12:59,360] [Preprocessor.java:241] [main] Processing chromosome C20764 Processing chromosome C20764 INFO [2014-03-08 06:12:59,383] [Preprocessor.java:241] [main] Processing chromosome C20766 Processing chromosome C20766 INFO [2014-03-08 06:12:59,401] [Preprocessor.java:241] [main] Processing chromosome C20768 Processing chromosome C20768 INFO [2014-03-08 06:12:59,418] [Preprocessor.java:241] [main] Processing chromosome C20774 Processing chromosome C20774 INFO [2014-03-08 06:12:59,431] [Preprocessor.java:241] [main] Processing chromosome C20782 Processing chromosome C20782 INFO [2014-03-08 06:12:59,451] [Preprocessor.java:241] [main] Processing chromosome C20790 Processing chromosome C20790 INFO [2014-03-08 06:12:59,510] [Preprocessor.java:241] [main] Processing chromosome C20808 Processing chromosome C20808 INFO [2014-03-08 06:12:59,515] [Preprocessor.java:241] [main] Processing chromosome C20828 Processing chromosome C20828 INFO [2014-03-08 06:12:59,526] [Preprocessor.java:241] [main] Processing chromosome C20848 Processing chromosome C20848 INFO [2014-03-08 06:12:59,549] [Preprocessor.java:241] [main] Processing chromosome C20858 Processing chromosome C20858 INFO [2014-03-08 06:12:59,596] [Preprocessor.java:241] [main] Processing chromosome C2087 Processing chromosome C2087 INFO [2014-03-08 06:12:59,628] [Preprocessor.java:241] [main] Processing chromosome C20870 Processing chromosome C20870 INFO [2014-03-08 06:12:59,666] [Preprocessor.java:241] [main] Processing chromosome C20874 Processing chromosome C20874 INFO [2014-03-08 06:12:59,694] [Preprocessor.java:241] [main] Processing chromosome C20884 Processing chromosome C20884 INFO [2014-03-08 06:12:59,738] [Preprocessor.java:241] [main] Processing chromosome C20888 Processing chromosome C20888 INFO [2014-03-08 06:12:59,778] [Preprocessor.java:241] [main] Processing chromosome C2089 Processing chromosome C2089 INFO [2014-03-08 06:12:59,814] [Preprocessor.java:241] [main] Processing chromosome C20900 Processing chromosome C20900 INFO [2014-03-08 06:12:59,874] [Preprocessor.java:241] [main] Processing chromosome C20906 Processing chromosome C20906 INFO [2014-03-08 06:12:59,941] [Preprocessor.java:241] [main] Processing chromosome C20916 Processing chromosome C20916 INFO [2014-03-08 06:13:00,004] [Preprocessor.java:241] [main] Processing chromosome C20920 Processing chromosome C20920 INFO [2014-03-08 06:13:00,015] [Preprocessor.java:241] [main] Processing chromosome C20928 Processing chromosome C20928 INFO [2014-03-08 06:13:00,021] [Preprocessor.java:241] [main] Processing chromosome C20942 Processing chromosome C20942 INFO [2014-03-08 06:13:00,039] [Preprocessor.java:241] [main] Processing chromosome C20946 Processing chromosome C20946 INFO [2014-03-08 06:13:00,064] [Preprocessor.java:241] [main] Processing chromosome C20948 Processing chromosome C20948 INFO [2014-03-08 06:13:00,087] [Preprocessor.java:241] [main] Processing chromosome C20986 Processing chromosome C20986 INFO [2014-03-08 06:13:00,099] [Preprocessor.java:241] [main] Processing chromosome C21000 Processing chromosome C21000 INFO [2014-03-08 06:13:00,148] [Preprocessor.java:241] [main] Processing chromosome C21008 Processing chromosome C21008 INFO [2014-03-08 06:13:00,181] [Preprocessor.java:241] [main] Processing chromosome C21012 Processing chromosome C21012 INFO [2014-03-08 06:13:00,214] [Preprocessor.java:241] [main] Processing chromosome C21018 Processing chromosome C21018 INFO [2014-03-08 06:13:00,232] [Preprocessor.java:241] [main] Processing chromosome C21032 Processing chromosome C21032 INFO [2014-03-08 06:13:00,254] [Preprocessor.java:241] [main] Processing chromosome C21036 Processing chromosome C21036 INFO [2014-03-08 06:13:00,279] [Preprocessor.java:241] [main] Processing chromosome C21038 Processing chromosome C21038 INFO [2014-03-08 06:13:00,311] [Preprocessor.java:241] [main] Processing chromosome C21046 Processing chromosome C21046 INFO [2014-03-08 06:13:00,336] [Preprocessor.java:241] [main] Processing chromosome C21050 Processing chromosome C21050 INFO [2014-03-08 06:13:00,347] [Preprocessor.java:241] [main] Processing chromosome C21060 Processing chromosome C21060 INFO [2014-03-08 06:13:00,383] [Preprocessor.java:241] [main] Processing chromosome C21062 Processing chromosome C21062 INFO [2014-03-08 06:13:00,395] [Preprocessor.java:241] [main] Processing chromosome C21064 Processing chromosome C21064 INFO [2014-03-08 06:13:00,424] [Preprocessor.java:241] [main] Processing chromosome C21072 Processing chromosome C21072 INFO [2014-03-08 06:13:00,445] [Preprocessor.java:241] [main] Processing chromosome C21094 Processing chromosome C21094 INFO [2014-03-08 06:13:00,504] [Preprocessor.java:241] [main] Processing chromosome C21096 Processing chromosome C21096 INFO [2014-03-08 06:13:00,517] [Preprocessor.java:241] [main] Processing chromosome C21102 Processing chromosome C21102 INFO [2014-03-08 06:13:00,541] [Preprocessor.java:241] [main] Processing chromosome C21104 Processing chromosome C21104 INFO [2014-03-08 06:13:00,545] [Preprocessor.java:241] [main] Processing chromosome C21108 Processing chromosome C21108 INFO [2014-03-08 06:13:00,576] [Preprocessor.java:241] [main] Processing chromosome C21120 Processing chromosome C21120 INFO [2014-03-08 06:13:00,592] [Preprocessor.java:241] [main] Processing chromosome C21122 Processing chromosome C21122 INFO [2014-03-08 06:13:00,604] [Preprocessor.java:241] [main] Processing chromosome C21128 Processing chromosome C21128 INFO [2014-03-08 06:13:00,638] [Preprocessor.java:241] [main] Processing chromosome C21130 Processing chromosome C21130 INFO [2014-03-08 06:13:00,657] [Preprocessor.java:241] [main] Processing chromosome C21134 Processing chromosome C21134 INFO [2014-03-08 06:13:00,663] [Preprocessor.java:241] [main] Processing chromosome C21144 Processing chromosome C21144 INFO [2014-03-08 06:13:00,688] [Preprocessor.java:241] [main] Processing chromosome C21154 Processing chromosome C21154 INFO [2014-03-08 06:13:00,702] [Preprocessor.java:241] [main] Processing chromosome C21156 Processing chromosome C21156 INFO [2014-03-08 06:13:00,741] [Preprocessor.java:241] [main] Processing chromosome C21160 Processing chromosome C21160 INFO [2014-03-08 06:13:00,774] [Preprocessor.java:241] [main] Processing chromosome C21170 Processing chromosome C21170 INFO [2014-03-08 06:13:00,813] [Preprocessor.java:241] [main] Processing chromosome C21176 Processing chromosome C21176 INFO [2014-03-08 06:13:00,872] [Preprocessor.java:241] [main] Processing chromosome C21178 Processing chromosome C21178 INFO [2014-03-08 06:13:00,905] [Preprocessor.java:241] [main] Processing chromosome C21186 Processing chromosome C21186 INFO [2014-03-08 06:13:00,912] [Preprocessor.java:241] [main] Processing chromosome C21188 Processing chromosome C21188 INFO [2014-03-08 06:13:00,959] [Preprocessor.java:241] [main] Processing chromosome C21194 Processing chromosome C21194 INFO [2014-03-08 06:13:00,964] [Preprocessor.java:241] [main] Processing chromosome C21218 Processing chromosome C21218 INFO [2014-03-08 06:13:00,973] [Preprocessor.java:241] [main] Processing chromosome C21226 Processing chromosome C21226 INFO [2014-03-08 06:13:01,003] [Preprocessor.java:241] [main] Processing chromosome C21236 Processing chromosome C21236 INFO [2014-03-08 06:13:01,036] [Preprocessor.java:241] [main] Processing chromosome C21238 Processing chromosome C21238 INFO [2014-03-08 06:13:01,051] [Preprocessor.java:241] [main] Processing chromosome C21256 Processing chromosome C21256 INFO [2014-03-08 06:13:01,074] [Preprocessor.java:241] [main] Processing chromosome C21260 Processing chromosome C21260 INFO [2014-03-08 06:13:01,114] [Preprocessor.java:241] [main] Processing chromosome C21278 Processing chromosome C21278 INFO [2014-03-08 06:13:01,130] [Preprocessor.java:241] [main] Processing chromosome C21282 Processing chromosome C21282 INFO [2014-03-08 06:13:01,148] [Preprocessor.java:241] [main] Processing chromosome C21286 Processing chromosome C21286 INFO [2014-03-08 06:13:01,209] [Preprocessor.java:241] [main] Processing chromosome C21292 Processing chromosome C21292 INFO [2014-03-08 06:13:01,211] [Preprocessor.java:241] [main] Processing chromosome C21298 Processing chromosome C21298 INFO [2014-03-08 06:13:01,232] [Preprocessor.java:241] [main] Processing chromosome C21304 Processing chromosome C21304 INFO [2014-03-08 06:13:01,246] [Preprocessor.java:241] [main] Processing chromosome C21306 Processing chromosome C21306 INFO [2014-03-08 06:13:01,257] [Preprocessor.java:241] [main] Processing chromosome C21308 Processing chromosome C21308 INFO [2014-03-08 06:13:01,285] [Preprocessor.java:241] [main] Processing chromosome C21310 Processing chromosome C21310 INFO [2014-03-08 06:13:01,303] [Preprocessor.java:241] [main] Processing chromosome C21312 Processing chromosome C21312 INFO [2014-03-08 06:13:01,356] [Preprocessor.java:241] [main] Processing chromosome C21314 Processing chromosome C21314 INFO [2014-03-08 06:13:01,363] [Preprocessor.java:241] [main] Processing chromosome C21324 Processing chromosome C21324 INFO [2014-03-08 06:13:01,376] [Preprocessor.java:241] [main] Processing chromosome C21330 Processing chromosome C21330 INFO [2014-03-08 06:13:01,391] [Preprocessor.java:241] [main] Processing chromosome C21336 Processing chromosome C21336 INFO [2014-03-08 06:13:01,442] [Preprocessor.java:241] [main] Processing chromosome C21340 Processing chromosome C21340 INFO [2014-03-08 06:13:01,448] [Preprocessor.java:241] [main] Processing chromosome C21346 Processing chromosome C21346 INFO [2014-03-08 06:13:01,480] [Preprocessor.java:241] [main] Processing chromosome C21354 Processing chromosome C21354 INFO [2014-03-08 06:13:01,490] [Preprocessor.java:241] [main] Processing chromosome C21356 Processing chromosome C21356 INFO [2014-03-08 06:13:01,504] [Preprocessor.java:241] [main] Processing chromosome C21372 Processing chromosome C21372 INFO [2014-03-08 06:13:01,520] [Preprocessor.java:241] [main] Processing chromosome C21374 Processing chromosome C21374 INFO [2014-03-08 06:13:01,570] [Preprocessor.java:241] [main] Processing chromosome C21378 Processing chromosome C21378 INFO [2014-03-08 06:13:01,605] [Preprocessor.java:241] [main] Processing chromosome C21380 Processing chromosome C21380 INFO [2014-03-08 06:13:01,651] [Preprocessor.java:241] [main] Processing chromosome C21386 Processing chromosome C21386 INFO [2014-03-08 06:13:01,673] [Preprocessor.java:241] [main] Processing chromosome C21404 Processing chromosome C21404 INFO [2014-03-08 06:13:01,679] [Preprocessor.java:241] [main] Processing chromosome C2141 Processing chromosome C2141 INFO [2014-03-08 06:13:01,709] [Preprocessor.java:241] [main] Processing chromosome C21418 Processing chromosome C21418 INFO [2014-03-08 06:13:01,750] [Preprocessor.java:241] [main] Processing chromosome C21438 Processing chromosome C21438 INFO [2014-03-08 06:13:01,765] [Preprocessor.java:241] [main] Processing chromosome C2145 Processing chromosome C2145 INFO [2014-03-08 06:13:01,820] [Preprocessor.java:241] [main] Processing chromosome C21454 Processing chromosome C21454 INFO [2014-03-08 06:13:01,848] [Preprocessor.java:241] [main] Processing chromosome C21460 Processing chromosome C21460 INFO [2014-03-08 06:13:01,876] [Preprocessor.java:241] [main] Processing chromosome C21474 Processing chromosome C21474 INFO [2014-03-08 06:13:01,936] [Preprocessor.java:241] [main] Processing chromosome C21484 Processing chromosome C21484 INFO [2014-03-08 06:13:01,976] [Preprocessor.java:241] [main] Processing chromosome C21494 Processing chromosome C21494 INFO [2014-03-08 06:13:01,984] [Preprocessor.java:241] [main] Processing chromosome C21500 Processing chromosome C21500 INFO [2014-03-08 06:13:02,020] [Preprocessor.java:241] [main] Processing chromosome C21502 Processing chromosome C21502 INFO [2014-03-08 06:13:02,071] [Preprocessor.java:241] [main] Processing chromosome C21504 Processing chromosome C21504 INFO [2014-03-08 06:13:02,081] [Preprocessor.java:241] [main] Processing chromosome C21508 Processing chromosome C21508 INFO [2014-03-08 06:13:02,106] [Preprocessor.java:241] [main] Processing chromosome C21516 Processing chromosome C21516 INFO [2014-03-08 06:13:02,144] [Preprocessor.java:241] [main] Processing chromosome C21518 Processing chromosome C21518 INFO [2014-03-08 06:13:02,151] [Preprocessor.java:241] [main] Processing chromosome C21544 Processing chromosome C21544 INFO [2014-03-08 06:13:02,159] [Preprocessor.java:241] [main] Processing chromosome C21548 Processing chromosome C21548 INFO [2014-03-08 06:13:02,200] [Preprocessor.java:241] [main] Processing chromosome C21550 Processing chromosome C21550 INFO [2014-03-08 06:13:02,222] [Preprocessor.java:241] [main] Processing chromosome C21554 Processing chromosome C21554 INFO [2014-03-08 06:13:02,261] [Preprocessor.java:241] [main] Processing chromosome C21558 Processing chromosome C21558 INFO [2014-03-08 06:13:02,270] [Preprocessor.java:241] [main] Processing chromosome C21560 Processing chromosome C21560 INFO [2014-03-08 06:13:02,276] [Preprocessor.java:241] [main] Processing chromosome C21564 Processing chromosome C21564 INFO [2014-03-08 06:13:02,280] [Preprocessor.java:241] [main] Processing chromosome C21566 Processing chromosome C21566 INFO [2014-03-08 06:13:02,300] [Preprocessor.java:241] [main] Processing chromosome C21572 Processing chromosome C21572 INFO [2014-03-08 06:13:02,353] [Preprocessor.java:241] [main] Processing chromosome C21578 Processing chromosome C21578 INFO [2014-03-08 06:13:02,362] [Preprocessor.java:241] [main] Processing chromosome C21582 Processing chromosome C21582 INFO [2014-03-08 06:13:02,367] [Preprocessor.java:241] [main] Processing chromosome C21586 Processing chromosome C21586 INFO [2014-03-08 06:13:02,387] [Preprocessor.java:241] [main] Processing chromosome C21588 Processing chromosome C21588 INFO [2014-03-08 06:13:02,436] [Preprocessor.java:241] [main] Processing chromosome C21590 Processing chromosome C21590 INFO [2014-03-08 06:13:02,489] [Preprocessor.java:241] [main] Processing chromosome C21596 Processing chromosome C21596 INFO [2014-03-08 06:13:02,510] [Preprocessor.java:241] [main] Processing chromosome C21610 Processing chromosome C21610 INFO [2014-03-08 06:13:02,531] [Preprocessor.java:241] [main] Processing chromosome C21614 Processing chromosome C21614 INFO [2014-03-08 06:13:02,556] [Preprocessor.java:241] [main] Processing chromosome C21616 Processing chromosome C21616 INFO [2014-03-08 06:13:02,577] [Preprocessor.java:241] [main] Processing chromosome C21622 Processing chromosome C21622 INFO [2014-03-08 06:13:02,608] [Preprocessor.java:241] [main] Processing chromosome C21624 Processing chromosome C21624 INFO [2014-03-08 06:13:02,630] [Preprocessor.java:241] [main] Processing chromosome C21634 Processing chromosome C21634 INFO [2014-03-08 06:13:02,641] [Preprocessor.java:241] [main] Processing chromosome C21636 Processing chromosome C21636 INFO [2014-03-08 06:13:02,662] [Preprocessor.java:241] [main] Processing chromosome C21638 Processing chromosome C21638 INFO [2014-03-08 06:13:02,672] [Preprocessor.java:241] [main] Processing chromosome C21650 Processing chromosome C21650 INFO [2014-03-08 06:13:02,686] [Preprocessor.java:241] [main] Processing chromosome C21652 Processing chromosome C21652 INFO [2014-03-08 06:13:02,715] [Preprocessor.java:241] [main] Processing chromosome C21654 Processing chromosome C21654 INFO [2014-03-08 06:13:02,766] [Preprocessor.java:241] [main] Processing chromosome C21670 Processing chromosome C21670 INFO [2014-03-08 06:13:02,770] [Preprocessor.java:241] [main] Processing chromosome C21684 Processing chromosome C21684 INFO [2014-03-08 06:13:02,789] [Preprocessor.java:241] [main] Processing chromosome C21694 Processing chromosome C21694 INFO [2014-03-08 06:13:02,820] [Preprocessor.java:241] [main] Processing chromosome C21696 Processing chromosome C21696 INFO [2014-03-08 06:13:02,855] [Preprocessor.java:241] [main] Processing chromosome C21702 Processing chromosome C21702 INFO [2014-03-08 06:13:02,900] [Preprocessor.java:241] [main] Processing chromosome C21710 Processing chromosome C21710 INFO [2014-03-08 06:13:02,922] [Preprocessor.java:241] [main] Processing chromosome C21716 Processing chromosome C21716 INFO [2014-03-08 06:13:02,948] [Preprocessor.java:241] [main] Processing chromosome C21720 Processing chromosome C21720 INFO [2014-03-08 06:13:02,977] [Preprocessor.java:241] [main] Processing chromosome C21722 Processing chromosome C21722 INFO [2014-03-08 06:13:03,030] [Preprocessor.java:241] [main] Processing chromosome C21724 Processing chromosome C21724 INFO [2014-03-08 06:13:03,050] [Preprocessor.java:241] [main] Processing chromosome C21728 Processing chromosome C21728 INFO [2014-03-08 06:13:03,065] [Preprocessor.java:241] [main] Processing chromosome C21730 Processing chromosome C21730 INFO [2014-03-08 06:13:03,102] [Preprocessor.java:241] [main] Processing chromosome C21750 Processing chromosome C21750 INFO [2014-03-08 06:13:03,112] [Preprocessor.java:241] [main] Processing chromosome C21764 Processing chromosome C21764 INFO [2014-03-08 06:13:03,156] [Preprocessor.java:241] [main] Processing chromosome C21766 Processing chromosome C21766 INFO [2014-03-08 06:13:03,167] [Preprocessor.java:241] [main] Processing chromosome C21780 Processing chromosome C21780 INFO [2014-03-08 06:13:03,179] [Preprocessor.java:241] [main] Processing chromosome C21782 Processing chromosome C21782 INFO [2014-03-08 06:13:03,184] [Preprocessor.java:241] [main] Processing chromosome C21784 Processing chromosome C21784 INFO [2014-03-08 06:13:03,199] [Preprocessor.java:241] [main] Processing chromosome C21790 Processing chromosome C21790 INFO [2014-03-08 06:13:03,213] [Preprocessor.java:241] [main] Processing chromosome C21792 Processing chromosome C21792 INFO [2014-03-08 06:13:03,237] [Preprocessor.java:241] [main] Processing chromosome C21796 Processing chromosome C21796 INFO [2014-03-08 06:13:03,268] [Preprocessor.java:241] [main] Processing chromosome C21802 Processing chromosome C21802 INFO [2014-03-08 06:13:03,287] [Preprocessor.java:241] [main] Processing chromosome C21804 Processing chromosome C21804 INFO [2014-03-08 06:13:03,293] [Preprocessor.java:241] [main] Processing chromosome C21812 Processing chromosome C21812 INFO [2014-03-08 06:13:03,297] [Preprocessor.java:241] [main] Processing chromosome C21820 Processing chromosome C21820 INFO [2014-03-08 06:13:03,313] [Preprocessor.java:241] [main] Processing chromosome C21834 Processing chromosome C21834 INFO [2014-03-08 06:13:03,324] [Preprocessor.java:241] [main] Processing chromosome C21840 Processing chromosome C21840 INFO [2014-03-08 06:13:03,328] [Preprocessor.java:241] [main] Processing chromosome C21848 Processing chromosome C21848 INFO [2014-03-08 06:13:03,333] [Preprocessor.java:241] [main] Processing chromosome C21852 Processing chromosome C21852 INFO [2014-03-08 06:13:03,344] [Preprocessor.java:241] [main] Processing chromosome C21854 Processing chromosome C21854 INFO [2014-03-08 06:13:03,372] [Preprocessor.java:241] [main] Processing chromosome C21858 Processing chromosome C21858 INFO [2014-03-08 06:13:03,380] [Preprocessor.java:241] [main] Processing chromosome C21862 Processing chromosome C21862 INFO [2014-03-08 06:13:03,485] [Preprocessor.java:241] [main] Processing chromosome C21868 Processing chromosome C21868 INFO [2014-03-08 06:13:03,493] [Preprocessor.java:241] [main] Processing chromosome C21870 Processing chromosome C21870 INFO [2014-03-08 06:13:03,501] [Preprocessor.java:241] [main] Processing chromosome C21884 Processing chromosome C21884 INFO [2014-03-08 06:13:03,517] [Preprocessor.java:241] [main] Processing chromosome C21892 Processing chromosome C21892 INFO [2014-03-08 06:13:03,559] [Preprocessor.java:241] [main] Processing chromosome C21896 Processing chromosome C21896 INFO [2014-03-08 06:13:03,566] [Preprocessor.java:241] [main] Processing chromosome C21924 Processing chromosome C21924 INFO [2014-03-08 06:13:03,625] [Preprocessor.java:241] [main] Processing chromosome C21942 Processing chromosome C21942 INFO [2014-03-08 06:13:03,650] [Preprocessor.java:241] [main] Processing chromosome C21944 Processing chromosome C21944 INFO [2014-03-08 06:13:03,704] [Preprocessor.java:241] [main] Processing chromosome C21956 Processing chromosome C21956 INFO [2014-03-08 06:13:03,716] [Preprocessor.java:241] [main] Processing chromosome C21988 Processing chromosome C21988 INFO [2014-03-08 06:13:03,720] [Preprocessor.java:241] [main] Processing chromosome C21994 Processing chromosome C21994 INFO [2014-03-08 06:13:03,750] [Preprocessor.java:241] [main] Processing chromosome C22000 Processing chromosome C22000 INFO [2014-03-08 06:13:03,770] [Preprocessor.java:241] [main] Processing chromosome C2201 Processing chromosome C2201 INFO [2014-03-08 06:13:03,835] [Preprocessor.java:241] [main] Processing chromosome C22010 Processing chromosome C22010 INFO [2014-03-08 06:13:03,847] [Preprocessor.java:241] [main] Processing chromosome C22012 Processing chromosome C22012 INFO [2014-03-08 06:13:03,866] [Preprocessor.java:241] [main] Processing chromosome C22018 Processing chromosome C22018 INFO [2014-03-08 06:13:03,874] [Preprocessor.java:241] [main] Processing chromosome C22020 Processing chromosome C22020 INFO [2014-03-08 06:13:03,900] [Preprocessor.java:241] [main] Processing chromosome C22028 Processing chromosome C22028 INFO [2014-03-08 06:13:03,905] [Preprocessor.java:241] [main] Processing chromosome C22032 Processing chromosome C22032 INFO [2014-03-08 06:13:03,913] [Preprocessor.java:241] [main] Processing chromosome C22036 Processing chromosome C22036 INFO [2014-03-08 06:13:03,940] [Preprocessor.java:241] [main] Processing chromosome C22046 Processing chromosome C22046 INFO [2014-03-08 06:13:03,961] [Preprocessor.java:241] [main] Processing chromosome C22048 Processing chromosome C22048 INFO [2014-03-08 06:13:03,968] [Preprocessor.java:241] [main] Processing chromosome C22056 Processing chromosome C22056 INFO [2014-03-08 06:13:03,974] [Preprocessor.java:241] [main] Processing chromosome C22058 Processing chromosome C22058 INFO [2014-03-08 06:13:03,995] [Preprocessor.java:241] [main] Processing chromosome C22060 Processing chromosome C22060 INFO [2014-03-08 06:13:04,030] [Preprocessor.java:241] [main] Processing chromosome C22074 Processing chromosome C22074 INFO [2014-03-08 06:13:04,051] [Preprocessor.java:241] [main] Processing chromosome C22084 Processing chromosome C22084 INFO [2014-03-08 06:13:04,064] [Preprocessor.java:241] [main] Processing chromosome C22092 Processing chromosome C22092 INFO [2014-03-08 06:13:04,087] [Preprocessor.java:241] [main] Processing chromosome C22094 Processing chromosome C22094 INFO [2014-03-08 06:13:04,094] [Preprocessor.java:241] [main] Processing chromosome C22096 Processing chromosome C22096 INFO [2014-03-08 06:13:04,115] [Preprocessor.java:241] [main] Processing chromosome C22100 Processing chromosome C22100 INFO [2014-03-08 06:13:04,134] [Preprocessor.java:241] [main] Processing chromosome C22106 Processing chromosome C22106 INFO [2014-03-08 06:13:04,147] [Preprocessor.java:241] [main] Processing chromosome C22110 Processing chromosome C22110 INFO [2014-03-08 06:13:04,174] [Preprocessor.java:241] [main] Processing chromosome C22112 Processing chromosome C22112 INFO [2014-03-08 06:13:04,227] [Preprocessor.java:241] [main] Processing chromosome C22114 Processing chromosome C22114 INFO [2014-03-08 06:13:04,258] [Preprocessor.java:241] [main] Processing chromosome C22118 Processing chromosome C22118 INFO [2014-03-08 06:13:04,277] [Preprocessor.java:241] [main] Processing chromosome C22120 Processing chromosome C22120 INFO [2014-03-08 06:13:04,295] [Preprocessor.java:241] [main] Processing chromosome C22124 Processing chromosome C22124 INFO [2014-03-08 06:13:04,299] [Preprocessor.java:241] [main] Processing chromosome C22130 Processing chromosome C22130 INFO [2014-03-08 06:13:04,313] [Preprocessor.java:241] [main] Processing chromosome C22136 Processing chromosome C22136 INFO [2014-03-08 06:13:04,342] [Preprocessor.java:241] [main] Processing chromosome C22138 Processing chromosome C22138 INFO [2014-03-08 06:13:04,361] [Preprocessor.java:241] [main] Processing chromosome C22140 Processing chromosome C22140 INFO [2014-03-08 06:13:04,382] [Preprocessor.java:241] [main] Processing chromosome C22142 Processing chromosome C22142 INFO [2014-03-08 06:13:04,423] [Preprocessor.java:241] [main] Processing chromosome C22146 Processing chromosome C22146 INFO [2014-03-08 06:13:04,441] [Preprocessor.java:241] [main] Processing chromosome C22148 Processing chromosome C22148 INFO [2014-03-08 06:13:04,455] [Preprocessor.java:241] [main] Processing chromosome C22164 Processing chromosome C22164 INFO [2014-03-08 06:13:04,494] [Preprocessor.java:241] [main] Processing chromosome C22168 Processing chromosome C22168 INFO [2014-03-08 06:13:04,514] [Preprocessor.java:241] [main] Processing chromosome C22174 Processing chromosome C22174 INFO [2014-03-08 06:13:04,546] [Preprocessor.java:241] [main] Processing chromosome C22192 Processing chromosome C22192 INFO [2014-03-08 06:13:04,591] [Preprocessor.java:241] [main] Processing chromosome C22194 Processing chromosome C22194 INFO [2014-03-08 06:13:04,611] [Preprocessor.java:241] [main] Processing chromosome C22198 Processing chromosome C22198 INFO [2014-03-08 06:13:04,622] [Preprocessor.java:241] [main] Processing chromosome C22202 Processing chromosome C22202 INFO [2014-03-08 06:13:04,644] [Preprocessor.java:241] [main] Processing chromosome C22208 Processing chromosome C22208 INFO [2014-03-08 06:13:04,663] [Preprocessor.java:241] [main] Processing chromosome C22216 Processing chromosome C22216 INFO [2014-03-08 06:13:04,673] [Preprocessor.java:241] [main] Processing chromosome C22220 Processing chromosome C22220 INFO [2014-03-08 06:13:04,693] [Preprocessor.java:241] [main] Processing chromosome C22232 Processing chromosome C22232 INFO [2014-03-08 06:13:04,719] [Preprocessor.java:241] [main] Processing chromosome C22242 Processing chromosome C22242 INFO [2014-03-08 06:13:04,741] [Preprocessor.java:241] [main] Processing chromosome C22248 Processing chromosome C22248 INFO [2014-03-08 06:13:04,791] [Preprocessor.java:241] [main] Processing chromosome C22264 Processing chromosome C22264 INFO [2014-03-08 06:13:04,820] [Preprocessor.java:241] [main] Processing chromosome C22268 Processing chromosome C22268 INFO [2014-03-08 06:13:04,849] [Preprocessor.java:241] [main] Processing chromosome C22274 Processing chromosome C22274 INFO [2014-03-08 06:13:04,896] [Preprocessor.java:241] [main] Processing chromosome C22276 Processing chromosome C22276 INFO [2014-03-08 06:13:04,912] [Preprocessor.java:241] [main] Processing chromosome C22280 Processing chromosome C22280 INFO [2014-03-08 06:13:04,952] [Preprocessor.java:241] [main] Processing chromosome C22284 Processing chromosome C22284 INFO [2014-03-08 06:13:04,963] [Preprocessor.java:241] [main] Processing chromosome C22290 Processing chromosome C22290 INFO [2014-03-08 06:13:04,997] [Preprocessor.java:241] [main] Processing chromosome C22294 Processing chromosome C22294 INFO [2014-03-08 06:13:05,040] [Preprocessor.java:241] [main] Processing chromosome C22298 Processing chromosome C22298 INFO [2014-03-08 06:13:05,043] [Preprocessor.java:241] [main] Processing chromosome C22302 Processing chromosome C22302 INFO [2014-03-08 06:13:05,061] [Preprocessor.java:241] [main] Processing chromosome C22304 Processing chromosome C22304 INFO [2014-03-08 06:13:05,080] [Preprocessor.java:241] [main] Processing chromosome C22310 Processing chromosome C22310 INFO [2014-03-08 06:13:05,089] [Preprocessor.java:241] [main] Processing chromosome C22322 Processing chromosome C22322 INFO [2014-03-08 06:13:05,097] [Preprocessor.java:241] [main] Processing chromosome C22324 Processing chromosome C22324 INFO [2014-03-08 06:13:05,142] [Preprocessor.java:241] [main] Processing chromosome C22326 Processing chromosome C22326 INFO [2014-03-08 06:13:05,160] [Preprocessor.java:241] [main] Processing chromosome C22330 Processing chromosome C22330 INFO [2014-03-08 06:13:05,163] [Preprocessor.java:241] [main] Processing chromosome C22340 Processing chromosome C22340 INFO [2014-03-08 06:13:05,204] [Preprocessor.java:241] [main] Processing chromosome C22344 Processing chromosome C22344 INFO [2014-03-08 06:13:05,239] [Preprocessor.java:241] [main] Processing chromosome C22346 Processing chromosome C22346 INFO [2014-03-08 06:13:05,259] [Preprocessor.java:241] [main] Processing chromosome C22360 Processing chromosome C22360 INFO [2014-03-08 06:13:05,270] [Preprocessor.java:241] [main] Processing chromosome C22368 Processing chromosome C22368 INFO [2014-03-08 06:13:05,328] [Preprocessor.java:241] [main] Processing chromosome C22382 Processing chromosome C22382 INFO [2014-03-08 06:13:05,343] [Preprocessor.java:241] [main] Processing chromosome C22384 Processing chromosome C22384 INFO [2014-03-08 06:13:05,353] [Preprocessor.java:241] [main] Processing chromosome C22386 Processing chromosome C22386 INFO [2014-03-08 06:13:05,367] [Preprocessor.java:241] [main] Processing chromosome C22388 Processing chromosome C22388 INFO [2014-03-08 06:13:05,396] [Preprocessor.java:241] [main] Processing chromosome C22390 Processing chromosome C22390 INFO [2014-03-08 06:13:05,448] [Preprocessor.java:241] [main] Processing chromosome C22400 Processing chromosome C22400 INFO [2014-03-08 06:13:05,453] [Preprocessor.java:241] [main] Processing chromosome C22406 Processing chromosome C22406 INFO [2014-03-08 06:13:05,501] [Preprocessor.java:241] [main] Processing chromosome C22414 Processing chromosome C22414 INFO [2014-03-08 06:13:05,524] [Preprocessor.java:241] [main] Processing chromosome C22422 Processing chromosome C22422 INFO [2014-03-08 06:13:05,569] [Preprocessor.java:241] [main] Processing chromosome C22424 Processing chromosome C22424 INFO [2014-03-08 06:13:05,587] [Preprocessor.java:241] [main] Processing chromosome C22440 Processing chromosome C22440 INFO [2014-03-08 06:13:05,606] [Preprocessor.java:241] [main] Processing chromosome C22444 Processing chromosome C22444 INFO [2014-03-08 06:13:05,622] [Preprocessor.java:241] [main] Processing chromosome C2245 Processing chromosome C2245 INFO [2014-03-08 06:13:05,654] [Preprocessor.java:241] [main] Processing chromosome C22452 Processing chromosome C22452 INFO [2014-03-08 06:13:05,694] [Preprocessor.java:241] [main] Processing chromosome C22456 Processing chromosome C22456 INFO [2014-03-08 06:13:05,728] [Preprocessor.java:241] [main] Processing chromosome C22458 Processing chromosome C22458 INFO [2014-03-08 06:13:05,793] [Preprocessor.java:241] [main] Processing chromosome C22468 Processing chromosome C22468 INFO [2014-03-08 06:13:05,817] [Preprocessor.java:241] [main] Processing chromosome C22470 Processing chromosome C22470 INFO [2014-03-08 06:13:05,846] [Preprocessor.java:241] [main] Processing chromosome C22484 Processing chromosome C22484 INFO [2014-03-08 06:13:05,849] [Preprocessor.java:241] [main] Processing chromosome C22486 Processing chromosome C22486 INFO [2014-03-08 06:13:05,856] [Preprocessor.java:241] [main] Processing chromosome C22492 Processing chromosome C22492 INFO [2014-03-08 06:13:05,878] [Preprocessor.java:241] [main] Processing chromosome C22494 Processing chromosome C22494 INFO [2014-03-08 06:13:05,922] [Preprocessor.java:241] [main] Processing chromosome C22500 Processing chromosome C22500 INFO [2014-03-08 06:13:05,932] [Preprocessor.java:241] [main] Processing chromosome C2251 Processing chromosome C2251 INFO [2014-03-08 06:13:06,004] [Preprocessor.java:241] [main] Processing chromosome C22514 Processing chromosome C22514 INFO [2014-03-08 06:13:06,052] [Preprocessor.java:241] [main] Processing chromosome C22516 Processing chromosome C22516 INFO [2014-03-08 06:13:06,084] [Preprocessor.java:241] [main] Processing chromosome C22518 Processing chromosome C22518 INFO [2014-03-08 06:13:06,118] [Preprocessor.java:241] [main] Processing chromosome C22520 Processing chromosome C22520 INFO [2014-03-08 06:13:06,123] [Preprocessor.java:241] [main] Processing chromosome C22524 Processing chromosome C22524 INFO [2014-03-08 06:13:06,152] [Preprocessor.java:241] [main] Processing chromosome C22536 Processing chromosome C22536 INFO [2014-03-08 06:13:06,170] [Preprocessor.java:241] [main] Processing chromosome C22538 Processing chromosome C22538 INFO [2014-03-08 06:13:06,191] [Preprocessor.java:241] [main] Processing chromosome C22542 Processing chromosome C22542 INFO [2014-03-08 06:13:06,208] [Preprocessor.java:241] [main] Processing chromosome C22546 Processing chromosome C22546 INFO [2014-03-08 06:13:06,237] [Preprocessor.java:241] [main] Processing chromosome C22552 Processing chromosome C22552 INFO [2014-03-08 06:13:06,247] [Preprocessor.java:241] [main] Processing chromosome C22558 Processing chromosome C22558 INFO [2014-03-08 06:13:06,284] [Preprocessor.java:241] [main] Processing chromosome C22566 Processing chromosome C22566 INFO [2014-03-08 06:13:06,307] [Preprocessor.java:241] [main] Processing chromosome C22576 Processing chromosome C22576 INFO [2014-03-08 06:13:06,311] [Preprocessor.java:241] [main] Processing chromosome C22584 Processing chromosome C22584 INFO [2014-03-08 06:13:06,339] [Preprocessor.java:241] [main] Processing chromosome C22586 Processing chromosome C22586 INFO [2014-03-08 06:13:06,362] [Preprocessor.java:241] [main] Processing chromosome C22594 Processing chromosome C22594 INFO [2014-03-08 06:13:06,398] [Preprocessor.java:241] [main] Processing chromosome C22598 Processing chromosome C22598 INFO [2014-03-08 06:13:06,461] [Preprocessor.java:241] [main] Processing chromosome C22600 Processing chromosome C22600 INFO [2014-03-08 06:13:06,477] [Preprocessor.java:241] [main] Processing chromosome C22602 Processing chromosome C22602 INFO [2014-03-08 06:13:06,526] [Preprocessor.java:241] [main] Processing chromosome C22610 Processing chromosome C22610 INFO [2014-03-08 06:13:06,547] [Preprocessor.java:241] [main] Processing chromosome C22614 Processing chromosome C22614 INFO [2014-03-08 06:13:06,569] [Preprocessor.java:241] [main] Processing chromosome C22622 Processing chromosome C22622 INFO [2014-03-08 06:13:06,603] [Preprocessor.java:241] [main] Processing chromosome C22624 Processing chromosome C22624 INFO [2014-03-08 06:13:06,630] [Preprocessor.java:241] [main] Processing chromosome C22626 Processing chromosome C22626 INFO [2014-03-08 06:13:06,651] [Preprocessor.java:241] [main] Processing chromosome C22628 Processing chromosome C22628 INFO [2014-03-08 06:13:06,710] [Preprocessor.java:241] [main] Processing chromosome C22632 Processing chromosome C22632 INFO [2014-03-08 06:13:06,724] [Preprocessor.java:241] [main] Processing chromosome C22636 Processing chromosome C22636 INFO [2014-03-08 06:13:06,730] [Preprocessor.java:241] [main] Processing chromosome C22638 Processing chromosome C22638 INFO [2014-03-08 06:13:06,761] [Preprocessor.java:241] [main] Processing chromosome C22640 Processing chromosome C22640 INFO [2014-03-08 06:13:06,776] [Preprocessor.java:241] [main] Processing chromosome C22644 Processing chromosome C22644 INFO [2014-03-08 06:13:06,786] [Preprocessor.java:241] [main] Processing chromosome C22648 Processing chromosome C22648 INFO [2014-03-08 06:13:06,826] [Preprocessor.java:241] [main] Processing chromosome C22662 Processing chromosome C22662 INFO [2014-03-08 06:13:06,850] [Preprocessor.java:241] [main] Processing chromosome C22666 Processing chromosome C22666 INFO [2014-03-08 06:13:06,881] [Preprocessor.java:241] [main] Processing chromosome C22668 Processing chromosome C22668 INFO [2014-03-08 06:13:06,897] [Preprocessor.java:241] [main] Processing chromosome C22676 Processing chromosome C22676 INFO [2014-03-08 06:13:06,915] [Preprocessor.java:241] [main] Processing chromosome C22678 Processing chromosome C22678 INFO [2014-03-08 06:13:06,931] [Preprocessor.java:241] [main] Processing chromosome C22682 Processing chromosome C22682 INFO [2014-03-08 06:13:06,949] [Preprocessor.java:241] [main] Processing chromosome C22704 Processing chromosome C22704 INFO [2014-03-08 06:13:06,957] [Preprocessor.java:241] [main] Processing chromosome C22708 Processing chromosome C22708 INFO [2014-03-08 06:13:06,996] [Preprocessor.java:241] [main] Processing chromosome C22710 Processing chromosome C22710 INFO [2014-03-08 06:13:07,000] [Preprocessor.java:241] [main] Processing chromosome C22712 Processing chromosome C22712 INFO [2014-03-08 06:13:07,065] [Preprocessor.java:241] [main] Processing chromosome C22714 Processing chromosome C22714 INFO [2014-03-08 06:13:07,075] [Preprocessor.java:241] [main] Processing chromosome C22722 Processing chromosome C22722 INFO [2014-03-08 06:13:07,094] [Preprocessor.java:241] [main] Processing chromosome C22728 Processing chromosome C22728 INFO [2014-03-08 06:13:07,113] [Preprocessor.java:241] [main] Processing chromosome C22732 Processing chromosome C22732 INFO [2014-03-08 06:13:07,124] [Preprocessor.java:241] [main] Processing chromosome C22734 Processing chromosome C22734 INFO [2014-03-08 06:13:07,132] [Preprocessor.java:241] [main] Processing chromosome C22748 Processing chromosome C22748 INFO [2014-03-08 06:13:07,153] [Preprocessor.java:241] [main] Processing chromosome C22750 Processing chromosome C22750 INFO [2014-03-08 06:13:07,168] [Preprocessor.java:241] [main] Processing chromosome C22754 Processing chromosome C22754 INFO [2014-03-08 06:13:07,184] [Preprocessor.java:241] [main] Processing chromosome C22758 Processing chromosome C22758 INFO [2014-03-08 06:13:07,195] [Preprocessor.java:241] [main] Processing chromosome C22772 Processing chromosome C22772 INFO [2014-03-08 06:13:07,205] [Preprocessor.java:241] [main] Processing chromosome C22778 Processing chromosome C22778 INFO [2014-03-08 06:13:07,237] [Preprocessor.java:241] [main] Processing chromosome C22784 Processing chromosome C22784 INFO [2014-03-08 06:13:07,263] [Preprocessor.java:241] [main] Processing chromosome C22790 Processing chromosome C22790 INFO [2014-03-08 06:13:07,307] [Preprocessor.java:241] [main] Processing chromosome C22794 Processing chromosome C22794 INFO [2014-03-08 06:13:07,332] [Preprocessor.java:241] [main] Processing chromosome C22798 Processing chromosome C22798 INFO [2014-03-08 06:13:07,355] [Preprocessor.java:241] [main] Processing chromosome C22800 Processing chromosome C22800 INFO [2014-03-08 06:13:07,375] [Preprocessor.java:241] [main] Processing chromosome C22802 Processing chromosome C22802 INFO [2014-03-08 06:13:07,390] [Preprocessor.java:241] [main] Processing chromosome C22804 Processing chromosome C22804 INFO [2014-03-08 06:13:07,431] [Preprocessor.java:241] [main] Processing chromosome C22810 Processing chromosome C22810 INFO [2014-03-08 06:13:07,456] [Preprocessor.java:241] [main] Processing chromosome C22822 Processing chromosome C22822 INFO [2014-03-08 06:13:07,482] [Preprocessor.java:241] [main] Processing chromosome C22824 Processing chromosome C22824 INFO [2014-03-08 06:13:07,513] [Preprocessor.java:241] [main] Processing chromosome C22842 Processing chromosome C22842 INFO [2014-03-08 06:13:07,558] [Preprocessor.java:241] [main] Processing chromosome C22844 Processing chromosome C22844 INFO [2014-03-08 06:13:07,586] [Preprocessor.java:241] [main] Processing chromosome C2285 Processing chromosome C2285 INFO [2014-03-08 06:13:07,657] [Preprocessor.java:241] [main] Processing chromosome C22856 Processing chromosome C22856 INFO [2014-03-08 06:13:07,691] [Preprocessor.java:241] [main] Processing chromosome C22862 Processing chromosome C22862 INFO [2014-03-08 06:13:07,729] [Preprocessor.java:241] [main] Processing chromosome C22866 Processing chromosome C22866 INFO [2014-03-08 06:13:07,757] [Preprocessor.java:241] [main] Processing chromosome C22868 Processing chromosome C22868 INFO [2014-03-08 06:13:07,782] [Preprocessor.java:241] [main] Processing chromosome C22870 Processing chromosome C22870 INFO [2014-03-08 06:13:07,855] [Preprocessor.java:241] [main] Processing chromosome C22888 Processing chromosome C22888 INFO [2014-03-08 06:13:07,907] [Preprocessor.java:241] [main] Processing chromosome C22890 Processing chromosome C22890 INFO [2014-03-08 06:13:07,915] [Preprocessor.java:241] [main] Processing chromosome C22892 Processing chromosome C22892 INFO [2014-03-08 06:13:07,956] [Preprocessor.java:241] [main] Processing chromosome C22894 Processing chromosome C22894 INFO [2014-03-08 06:13:07,965] [Preprocessor.java:241] [main] Processing chromosome C22902 Processing chromosome C22902 INFO [2014-03-08 06:13:07,970] [Preprocessor.java:241] [main] Processing chromosome C22910 Processing chromosome C22910 INFO [2014-03-08 06:13:07,981] [Preprocessor.java:241] [main] Processing chromosome C22926 Processing chromosome C22926 INFO [2014-03-08 06:13:08,044] [Preprocessor.java:241] [main] Processing chromosome C22928 Processing chromosome C22928 INFO [2014-03-08 06:13:08,055] [Preprocessor.java:241] [main] Processing chromosome C2293 Processing chromosome C2293 INFO [2014-03-08 06:13:08,090] [Preprocessor.java:241] [main] Processing chromosome C22940 Processing chromosome C22940 INFO [2014-03-08 06:13:08,144] [Preprocessor.java:241] [main] Processing chromosome C22944 Processing chromosome C22944 INFO [2014-03-08 06:13:08,164] [Preprocessor.java:241] [main] Processing chromosome C22948 Processing chromosome C22948 INFO [2014-03-08 06:13:08,192] [Preprocessor.java:241] [main] Processing chromosome C22958 Processing chromosome C22958 INFO [2014-03-08 06:13:08,240] [Preprocessor.java:241] [main] Processing chromosome C22968 Processing chromosome C22968 INFO [2014-03-08 06:13:08,261] [Preprocessor.java:241] [main] Processing chromosome C22972 Processing chromosome C22972 INFO [2014-03-08 06:13:08,311] [Preprocessor.java:241] [main] Processing chromosome C22978 Processing chromosome C22978 INFO [2014-03-08 06:13:08,340] [Preprocessor.java:241] [main] Processing chromosome C22980 Processing chromosome C22980 INFO [2014-03-08 06:13:08,368] [Preprocessor.java:241] [main] Processing chromosome C22982 Processing chromosome C22982 INFO [2014-03-08 06:13:08,390] [Preprocessor.java:241] [main] Processing chromosome C22990 Processing chromosome C22990 INFO [2014-03-08 06:13:08,433] [Preprocessor.java:241] [main] Processing chromosome C22994 Processing chromosome C22994 INFO [2014-03-08 06:13:08,459] [Preprocessor.java:241] [main] Processing chromosome C22996 Processing chromosome C22996 INFO [2014-03-08 06:13:08,500] [Preprocessor.java:241] [main] Processing chromosome C23000 Processing chromosome C23000 INFO [2014-03-08 06:13:08,532] [Preprocessor.java:241] [main] Processing chromosome C23010 Processing chromosome C23010 INFO [2014-03-08 06:13:08,579] [Preprocessor.java:241] [main] Processing chromosome C23016 Processing chromosome C23016 INFO [2014-03-08 06:13:08,595] [Preprocessor.java:241] [main] Processing chromosome C23024 Processing chromosome C23024 INFO [2014-03-08 06:13:08,629] [Preprocessor.java:241] [main] Processing chromosome C23030 Processing chromosome C23030 INFO [2014-03-08 06:13:08,667] [Preprocessor.java:241] [main] Processing chromosome C23036 Processing chromosome C23036 INFO [2014-03-08 06:13:08,696] [Preprocessor.java:241] [main] Processing chromosome C23040 Processing chromosome C23040 INFO [2014-03-08 06:13:08,705] [Preprocessor.java:241] [main] Processing chromosome C23042 Processing chromosome C23042 INFO [2014-03-08 06:13:08,710] [Preprocessor.java:241] [main] Processing chromosome C23048 Processing chromosome C23048 INFO [2014-03-08 06:13:08,722] [Preprocessor.java:241] [main] Processing chromosome C23080 Processing chromosome C23080 INFO [2014-03-08 06:13:08,739] [Preprocessor.java:241] [main] Processing chromosome C23092 Processing chromosome C23092 INFO [2014-03-08 06:13:08,752] [Preprocessor.java:241] [main] Processing chromosome C23096 Processing chromosome C23096 INFO [2014-03-08 06:13:08,789] [Preprocessor.java:241] [main] Processing chromosome C23098 Processing chromosome C23098 INFO [2014-03-08 06:13:08,820] [Preprocessor.java:241] [main] Processing chromosome C23102 Processing chromosome C23102 INFO [2014-03-08 06:13:08,847] [Preprocessor.java:241] [main] Processing chromosome C23104 Processing chromosome C23104 INFO [2014-03-08 06:13:08,878] [Preprocessor.java:241] [main] Processing chromosome C23106 Processing chromosome C23106 INFO [2014-03-08 06:13:08,886] [Preprocessor.java:241] [main] Processing chromosome C23110 Processing chromosome C23110 INFO [2014-03-08 06:13:08,961] [Preprocessor.java:241] [main] Processing chromosome C23116 Processing chromosome C23116 INFO [2014-03-08 06:13:08,976] [Preprocessor.java:241] [main] Processing chromosome C23120 Processing chromosome C23120 INFO [2014-03-08 06:13:08,981] [Preprocessor.java:241] [main] Processing chromosome C23124 Processing chromosome C23124 INFO [2014-03-08 06:13:08,997] [Preprocessor.java:241] [main] Processing chromosome C23144 Processing chromosome C23144 INFO [2014-03-08 06:13:09,003] [Preprocessor.java:241] [main] Processing chromosome C23154 Processing chromosome C23154 INFO [2014-03-08 06:13:09,020] [Preprocessor.java:241] [main] Processing chromosome C23158 Processing chromosome C23158 INFO [2014-03-08 06:13:09,053] [Preprocessor.java:241] [main] Processing chromosome C23162 Processing chromosome C23162 INFO [2014-03-08 06:13:09,085] [Preprocessor.java:241] [main] Processing chromosome C23166 Processing chromosome C23166 INFO [2014-03-08 06:13:09,088] [Preprocessor.java:241] [main] Processing chromosome C2317 Processing chromosome C2317 INFO [2014-03-08 06:13:09,120] [Preprocessor.java:241] [main] Processing chromosome C23172 Processing chromosome C23172 INFO [2014-03-08 06:13:09,169] [Preprocessor.java:241] [main] Processing chromosome C23180 Processing chromosome C23180 INFO [2014-03-08 06:13:09,222] [Preprocessor.java:241] [main] Processing chromosome C23182 Processing chromosome C23182 INFO [2014-03-08 06:13:09,243] [Preprocessor.java:241] [main] Processing chromosome C23192 Processing chromosome C23192 INFO [2014-03-08 06:13:09,276] [Preprocessor.java:241] [main] Processing chromosome C23196 Processing chromosome C23196 INFO [2014-03-08 06:13:09,295] [Preprocessor.java:241] [main] Processing chromosome C23210 Processing chromosome C23210 INFO [2014-03-08 06:13:09,301] [Preprocessor.java:241] [main] Processing chromosome C23214 Processing chromosome C23214 INFO [2014-03-08 06:13:09,357] [Preprocessor.java:241] [main] Processing chromosome C23220 Processing chromosome C23220 INFO [2014-03-08 06:13:09,369] [Preprocessor.java:241] [main] Processing chromosome C23222 Processing chromosome C23222 INFO [2014-03-08 06:13:09,377] [Preprocessor.java:241] [main] Processing chromosome C23230 Processing chromosome C23230 INFO [2014-03-08 06:13:09,433] [Preprocessor.java:241] [main] Processing chromosome C23232 Processing chromosome C23232 INFO [2014-03-08 06:13:09,469] [Preprocessor.java:241] [main] Processing chromosome C23238 Processing chromosome C23238 INFO [2014-03-08 06:13:09,483] [Preprocessor.java:241] [main] Processing chromosome C23248 Processing chromosome C23248 INFO [2014-03-08 06:13:09,504] [Preprocessor.java:241] [main] Processing chromosome C23254 Processing chromosome C23254 INFO [2014-03-08 06:13:09,519] [Preprocessor.java:241] [main] Processing chromosome C23256 Processing chromosome C23256 INFO [2014-03-08 06:13:09,545] [Preprocessor.java:241] [main] Processing chromosome C23258 Processing chromosome C23258 INFO [2014-03-08 06:13:09,553] [Preprocessor.java:241] [main] Processing chromosome C23264 Processing chromosome C23264 INFO [2014-03-08 06:13:09,599] [Preprocessor.java:241] [main] Processing chromosome C23272 Processing chromosome C23272 INFO [2014-03-08 06:13:09,639] [Preprocessor.java:241] [main] Processing chromosome C23274 Processing chromosome C23274 INFO [2014-03-08 06:13:09,645] [Preprocessor.java:241] [main] Processing chromosome C23276 Processing chromosome C23276 INFO [2014-03-08 06:13:09,667] [Preprocessor.java:241] [main] Processing chromosome C23278 Processing chromosome C23278 INFO [2014-03-08 06:13:09,678] [Preprocessor.java:241] [main] Processing chromosome C23298 Processing chromosome C23298 INFO [2014-03-08 06:13:09,705] [Preprocessor.java:241] [main] Processing chromosome C23316 Processing chromosome C23316 INFO [2014-03-08 06:13:09,742] [Preprocessor.java:241] [main] Processing chromosome C23328 Processing chromosome C23328 INFO [2014-03-08 06:13:09,756] [Preprocessor.java:241] [main] Processing chromosome C23330 Processing chromosome C23330 INFO [2014-03-08 06:13:09,775] [Preprocessor.java:241] [main] Processing chromosome C23338 Processing chromosome C23338 INFO [2014-03-08 06:13:09,804] [Preprocessor.java:241] [main] Processing chromosome C23360 Processing chromosome C23360 INFO [2014-03-08 06:13:09,832] [Preprocessor.java:241] [main] Processing chromosome C23362 Processing chromosome C23362 INFO [2014-03-08 06:13:09,896] [Preprocessor.java:241] [main] Processing chromosome C23366 Processing chromosome C23366 INFO [2014-03-08 06:13:09,963] [Preprocessor.java:241] [main] Processing chromosome C23370 Processing chromosome C23370 INFO [2014-03-08 06:13:10,007] [Preprocessor.java:241] [main] Processing chromosome C23372 Processing chromosome C23372 INFO [2014-03-08 06:13:10,045] [Preprocessor.java:241] [main] Processing chromosome C23378 Processing chromosome C23378 INFO [2014-03-08 06:13:10,052] [Preprocessor.java:241] [main] Processing chromosome C23390 Processing chromosome C23390 INFO [2014-03-08 06:13:10,065] [Preprocessor.java:241] [main] Processing chromosome C23400 Processing chromosome C23400 INFO [2014-03-08 06:13:10,101] [Preprocessor.java:241] [main] Processing chromosome C23422 Processing chromosome C23422 INFO [2014-03-08 06:13:10,116] [Preprocessor.java:241] [main] Processing chromosome C23424 Processing chromosome C23424 INFO [2014-03-08 06:13:10,141] [Preprocessor.java:241] [main] Processing chromosome C23426 Processing chromosome C23426 INFO [2014-03-08 06:13:10,162] [Preprocessor.java:241] [main] Processing chromosome C23428 Processing chromosome C23428 INFO [2014-03-08 06:13:10,191] [Preprocessor.java:241] [main] Processing chromosome C23432 Processing chromosome C23432 INFO [2014-03-08 06:13:10,228] [Preprocessor.java:241] [main] Processing chromosome C23438 Processing chromosome C23438 INFO [2014-03-08 06:13:10,244] [Preprocessor.java:241] [main] Processing chromosome C23440 Processing chromosome C23440 INFO [2014-03-08 06:13:10,250] [Preprocessor.java:241] [main] Processing chromosome C23442 Processing chromosome C23442 INFO [2014-03-08 06:13:10,272] [Preprocessor.java:241] [main] Processing chromosome C23444 Processing chromosome C23444 INFO [2014-03-08 06:13:10,300] [Preprocessor.java:241] [main] Processing chromosome C23446 Processing chromosome C23446 INFO [2014-03-08 06:13:10,313] [Preprocessor.java:241] [main] Processing chromosome C23452 Processing chromosome C23452 INFO [2014-03-08 06:13:10,316] [Preprocessor.java:241] [main] Processing chromosome C23454 Processing chromosome C23454 INFO [2014-03-08 06:13:10,337] [Preprocessor.java:241] [main] Processing chromosome C23460 Processing chromosome C23460 INFO [2014-03-08 06:13:10,368] [Preprocessor.java:241] [main] Processing chromosome C23468 Processing chromosome C23468 INFO [2014-03-08 06:13:10,382] [Preprocessor.java:241] [main] Processing chromosome C23470 Processing chromosome C23470 INFO [2014-03-08 06:13:10,415] [Preprocessor.java:241] [main] Processing chromosome C23472 Processing chromosome C23472 INFO [2014-03-08 06:13:10,424] [Preprocessor.java:241] [main] Processing chromosome C23482 Processing chromosome C23482 INFO [2014-03-08 06:13:10,436] [Preprocessor.java:241] [main] Processing chromosome C23484 Processing chromosome C23484 INFO [2014-03-08 06:13:10,447] [Preprocessor.java:241] [main] Processing chromosome C23490 Processing chromosome C23490 INFO [2014-03-08 06:13:10,452] [Preprocessor.java:241] [main] Processing chromosome C23492 Processing chromosome C23492 INFO [2014-03-08 06:13:10,471] [Preprocessor.java:241] [main] Processing chromosome C23494 Processing chromosome C23494 INFO [2014-03-08 06:13:10,494] [Preprocessor.java:241] [main] Processing chromosome C23498 Processing chromosome C23498 INFO [2014-03-08 06:13:10,533] [Preprocessor.java:241] [main] Processing chromosome C23500 Processing chromosome C23500 INFO [2014-03-08 06:13:10,571] [Preprocessor.java:241] [main] Processing chromosome C23502 Processing chromosome C23502 INFO [2014-03-08 06:13:10,574] [Preprocessor.java:241] [main] Processing chromosome C23512 Processing chromosome C23512 INFO [2014-03-08 06:13:10,578] [Preprocessor.java:241] [main] Processing chromosome C23514 Processing chromosome C23514 INFO [2014-03-08 06:13:10,604] [Preprocessor.java:241] [main] Processing chromosome C23530 Processing chromosome C23530 INFO [2014-03-08 06:13:10,611] [Preprocessor.java:241] [main] Processing chromosome C23564 Processing chromosome C23564 INFO [2014-03-08 06:13:10,638] [Preprocessor.java:241] [main] Processing chromosome C23566 Processing chromosome C23566 INFO [2014-03-08 06:13:10,652] [Preprocessor.java:241] [main] Processing chromosome C23570 Processing chromosome C23570 INFO [2014-03-08 06:13:10,672] [Preprocessor.java:241] [main] Processing chromosome C23572 Processing chromosome C23572 INFO [2014-03-08 06:13:10,691] [Preprocessor.java:241] [main] Processing chromosome C23580 Processing chromosome C23580 INFO [2014-03-08 06:13:10,726] [Preprocessor.java:241] [main] Processing chromosome C23582 Processing chromosome C23582 INFO [2014-03-08 06:13:10,750] [Preprocessor.java:241] [main] Processing chromosome C23586 Processing chromosome C23586 INFO [2014-03-08 06:13:10,780] [Preprocessor.java:241] [main] Processing chromosome C23592 Processing chromosome C23592 INFO [2014-03-08 06:13:10,809] [Preprocessor.java:241] [main] Processing chromosome C23594 Processing chromosome C23594 INFO [2014-03-08 06:13:10,830] [Preprocessor.java:241] [main] Processing chromosome C23608 Processing chromosome C23608 INFO [2014-03-08 06:13:10,839] [Preprocessor.java:241] [main] Processing chromosome C23616 Processing chromosome C23616 INFO [2014-03-08 06:13:10,868] [Preprocessor.java:241] [main] Processing chromosome C23638 Processing chromosome C23638 INFO [2014-03-08 06:13:10,944] [Preprocessor.java:241] [main] Processing chromosome C23642 Processing chromosome C23642 INFO [2014-03-08 06:13:10,989] [Preprocessor.java:241] [main] Processing chromosome C23648 Processing chromosome C23648 INFO [2014-03-08 06:13:11,016] [Preprocessor.java:241] [main] Processing chromosome C23662 Processing chromosome C23662 INFO [2014-03-08 06:13:11,023] [Preprocessor.java:241] [main] Processing chromosome C23676 Processing chromosome C23676 INFO [2014-03-08 06:13:11,044] [Preprocessor.java:241] [main] Processing chromosome C23682 Processing chromosome C23682 INFO [2014-03-08 06:13:11,058] [Preprocessor.java:241] [main] Processing chromosome C23690 Processing chromosome C23690 INFO [2014-03-08 06:13:11,064] [Preprocessor.java:241] [main] Processing chromosome C23700 Processing chromosome C23700 INFO [2014-03-08 06:13:11,069] [Preprocessor.java:241] [main] Processing chromosome C23702 Processing chromosome C23702 INFO [2014-03-08 06:13:11,095] [Preprocessor.java:241] [main] Processing chromosome C23714 Processing chromosome C23714 INFO [2014-03-08 06:13:11,100] [Preprocessor.java:241] [main] Processing chromosome C23716 Processing chromosome C23716 INFO [2014-03-08 06:13:11,137] [Preprocessor.java:241] [main] Processing chromosome C23726 Processing chromosome C23726 INFO [2014-03-08 06:13:11,140] [Preprocessor.java:241] [main] Processing chromosome C23732 Processing chromosome C23732 INFO [2014-03-08 06:13:11,151] [Preprocessor.java:241] [main] Processing chromosome C23734 Processing chromosome C23734 INFO [2014-03-08 06:13:11,198] [Preprocessor.java:241] [main] Processing chromosome C23742 Processing chromosome C23742 INFO [2014-03-08 06:13:11,217] [Preprocessor.java:241] [main] Processing chromosome C23744 Processing chromosome C23744 INFO [2014-03-08 06:13:11,266] [Preprocessor.java:241] [main] Processing chromosome C23756 Processing chromosome C23756 INFO [2014-03-08 06:13:11,319] [Preprocessor.java:241] [main] Processing chromosome C23760 Processing chromosome C23760 INFO [2014-03-08 06:13:11,396] [Preprocessor.java:241] [main] Processing chromosome C23762 Processing chromosome C23762 INFO [2014-03-08 06:13:11,436] [Preprocessor.java:241] [main] Processing chromosome C23772 Processing chromosome C23772 INFO [2014-03-08 06:13:11,473] [Preprocessor.java:241] [main] Processing chromosome C23776 Processing chromosome C23776 INFO [2014-03-08 06:13:11,479] [Preprocessor.java:241] [main] Processing chromosome C23778 Processing chromosome C23778 INFO [2014-03-08 06:13:11,537] [Preprocessor.java:241] [main] Processing chromosome C23786 Processing chromosome C23786 INFO [2014-03-08 06:13:11,549] [Preprocessor.java:241] [main] Processing chromosome C23796 Processing chromosome C23796 INFO [2014-03-08 06:13:11,580] [Preprocessor.java:241] [main] Processing chromosome C23800 Processing chromosome C23800 INFO [2014-03-08 06:13:11,588] [Preprocessor.java:241] [main] Processing chromosome C23804 Processing chromosome C23804 INFO [2014-03-08 06:13:11,593] [Preprocessor.java:241] [main] Processing chromosome C23808 Processing chromosome C23808 INFO [2014-03-08 06:13:11,598] [Preprocessor.java:241] [main] Processing chromosome C23812 Processing chromosome C23812 INFO [2014-03-08 06:13:11,627] [Preprocessor.java:241] [main] Processing chromosome C23818 Processing chromosome C23818 INFO [2014-03-08 06:13:11,670] [Preprocessor.java:241] [main] Processing chromosome C23822 Processing chromosome C23822 INFO [2014-03-08 06:13:11,710] [Preprocessor.java:241] [main] Processing chromosome C23828 Processing chromosome C23828 INFO [2014-03-08 06:13:11,741] [Preprocessor.java:241] [main] Processing chromosome C23836 Processing chromosome C23836 INFO [2014-03-08 06:13:11,802] [Preprocessor.java:241] [main] Processing chromosome C23838 Processing chromosome C23838 INFO [2014-03-08 06:13:11,815] [Preprocessor.java:241] [main] Processing chromosome C23856 Processing chromosome C23856 INFO [2014-03-08 06:13:11,821] [Preprocessor.java:241] [main] Processing chromosome C23858 Processing chromosome C23858 INFO [2014-03-08 06:13:11,843] [Preprocessor.java:241] [main] Processing chromosome C23860 Processing chromosome C23860 INFO [2014-03-08 06:13:11,866] [Preprocessor.java:241] [main] Processing chromosome C23866 Processing chromosome C23866 INFO [2014-03-08 06:13:11,869] [Preprocessor.java:241] [main] Processing chromosome C23868 Processing chromosome C23868 INFO [2014-03-08 06:13:11,923] [Preprocessor.java:241] [main] Processing chromosome C23882 Processing chromosome C23882 INFO [2014-03-08 06:13:11,946] [Preprocessor.java:241] [main] Processing chromosome C23886 Processing chromosome C23886 INFO [2014-03-08 06:13:11,978] [Preprocessor.java:241] [main] Processing chromosome C23890 Processing chromosome C23890 INFO [2014-03-08 06:13:12,014] [Preprocessor.java:241] [main] Processing chromosome C23896 Processing chromosome C23896 INFO [2014-03-08 06:13:12,052] [Preprocessor.java:241] [main] Processing chromosome C23900 Processing chromosome C23900 INFO [2014-03-08 06:13:12,074] [Preprocessor.java:241] [main] Processing chromosome C23904 Processing chromosome C23904 INFO [2014-03-08 06:13:12,078] [Preprocessor.java:241] [main] Processing chromosome C23908 Processing chromosome C23908 INFO [2014-03-08 06:13:12,083] [Preprocessor.java:241] [main] Processing chromosome C23922 Processing chromosome C23922 INFO [2014-03-08 06:13:12,100] [Preprocessor.java:241] [main] Processing chromosome C23926 Processing chromosome C23926 INFO [2014-03-08 06:13:12,115] [Preprocessor.java:241] [main] Processing chromosome C23930 Processing chromosome C23930 INFO [2014-03-08 06:13:12,151] [Preprocessor.java:241] [main] Processing chromosome C23944 Processing chromosome C23944 INFO [2014-03-08 06:13:12,161] [Preprocessor.java:241] [main] Processing chromosome C23946 Processing chromosome C23946 INFO [2014-03-08 06:13:12,173] [Preprocessor.java:241] [main] Processing chromosome C23956 Processing chromosome C23956 INFO [2014-03-08 06:13:12,191] [Preprocessor.java:241] [main] Processing chromosome C23968 Processing chromosome C23968 INFO [2014-03-08 06:13:12,198] [Preprocessor.java:241] [main] Processing chromosome C23974 Processing chromosome C23974 INFO [2014-03-08 06:13:12,206] [Preprocessor.java:241] [main] Processing chromosome C24000 Processing chromosome C24000 INFO [2014-03-08 06:13:12,235] [Preprocessor.java:241] [main] Processing chromosome C24008 Processing chromosome C24008 INFO [2014-03-08 06:13:12,281] [Preprocessor.java:241] [main] Processing chromosome C24014 Processing chromosome C24014 INFO [2014-03-08 06:13:12,288] [Preprocessor.java:241] [main] Processing chromosome C24020 Processing chromosome C24020 INFO [2014-03-08 06:13:12,317] [Preprocessor.java:241] [main] Processing chromosome C24022 Processing chromosome C24022 INFO [2014-03-08 06:13:12,330] [Preprocessor.java:241] [main] Processing chromosome C24024 Processing chromosome C24024 INFO [2014-03-08 06:13:12,360] [Preprocessor.java:241] [main] Processing chromosome C24030 Processing chromosome C24030 INFO [2014-03-08 06:13:12,389] [Preprocessor.java:241] [main] Processing chromosome C24036 Processing chromosome C24036 INFO [2014-03-08 06:13:12,431] [Preprocessor.java:241] [main] Processing chromosome C24042 Processing chromosome C24042 INFO [2014-03-08 06:13:12,453] [Preprocessor.java:241] [main] Processing chromosome C24044 Processing chromosome C24044 INFO [2014-03-08 06:13:12,459] [Preprocessor.java:241] [main] Processing chromosome C24052 Processing chromosome C24052 INFO [2014-03-08 06:13:12,492] [Preprocessor.java:241] [main] Processing chromosome C24068 Processing chromosome C24068 INFO [2014-03-08 06:13:12,532] [Preprocessor.java:241] [main] Processing chromosome C24074 Processing chromosome C24074 INFO [2014-03-08 06:13:12,547] [Preprocessor.java:241] [main] Processing chromosome C24090 Processing chromosome C24090 INFO [2014-03-08 06:13:12,582] [Preprocessor.java:241] [main] Processing chromosome C24098 Processing chromosome C24098 INFO [2014-03-08 06:13:12,589] [Preprocessor.java:241] [main] Processing chromosome C24112 Processing chromosome C24112 INFO [2014-03-08 06:13:12,603] [Preprocessor.java:241] [main] Processing chromosome C24114 Processing chromosome C24114 INFO [2014-03-08 06:13:12,625] [Preprocessor.java:241] [main] Processing chromosome C24118 Processing chromosome C24118 INFO [2014-03-08 06:13:12,652] [Preprocessor.java:241] [main] Processing chromosome C24128 Processing chromosome C24128 INFO [2014-03-08 06:13:12,676] [Preprocessor.java:241] [main] Processing chromosome C24134 Processing chromosome C24134 INFO [2014-03-08 06:13:12,686] [Preprocessor.java:241] [main] Processing chromosome C24138 Processing chromosome C24138 INFO [2014-03-08 06:13:12,691] [Preprocessor.java:241] [main] Processing chromosome C24148 Processing chromosome C24148 INFO [2014-03-08 06:13:12,701] [Preprocessor.java:241] [main] Processing chromosome C24156 Processing chromosome C24156 INFO [2014-03-08 06:13:12,710] [Preprocessor.java:241] [main] Processing chromosome C24158 Processing chromosome C24158 INFO [2014-03-08 06:13:12,735] [Preprocessor.java:241] [main] Processing chromosome C24160 Processing chromosome C24160 INFO [2014-03-08 06:13:12,763] [Preprocessor.java:241] [main] Processing chromosome C24184 Processing chromosome C24184 INFO [2014-03-08 06:13:12,787] [Preprocessor.java:241] [main] Processing chromosome C24196 Processing chromosome C24196 INFO [2014-03-08 06:13:12,807] [Preprocessor.java:241] [main] Processing chromosome C24204 Processing chromosome C24204 INFO [2014-03-08 06:13:12,811] [Preprocessor.java:241] [main] Processing chromosome C24224 Processing chromosome C24224 INFO [2014-03-08 06:13:12,846] [Preprocessor.java:241] [main] Processing chromosome C24226 Processing chromosome C24226 INFO [2014-03-08 06:13:12,862] [Preprocessor.java:241] [main] Processing chromosome C24232 Processing chromosome C24232 INFO [2014-03-08 06:13:12,896] [Preprocessor.java:241] [main] Processing chromosome C24242 Processing chromosome C24242 INFO [2014-03-08 06:13:12,908] [Preprocessor.java:241] [main] Processing chromosome C24244 Processing chromosome C24244 INFO [2014-03-08 06:13:12,942] [Preprocessor.java:241] [main] Processing chromosome C24248 Processing chromosome C24248 INFO [2014-03-08 06:13:12,953] [Preprocessor.java:241] [main] Processing chromosome C24252 Processing chromosome C24252 INFO [2014-03-08 06:13:12,973] [Preprocessor.java:241] [main] Processing chromosome C24254 Processing chromosome C24254 INFO [2014-03-08 06:13:12,986] [Preprocessor.java:241] [main] Processing chromosome C24270 Processing chromosome C24270 INFO [2014-03-08 06:13:13,019] [Preprocessor.java:241] [main] Processing chromosome C24274 Processing chromosome C24274 INFO [2014-03-08 06:13:13,037] [Preprocessor.java:241] [main] Processing chromosome C24276 Processing chromosome C24276 INFO [2014-03-08 06:13:13,084] [Preprocessor.java:241] [main] Processing chromosome C24280 Processing chromosome C24280 INFO [2014-03-08 06:13:13,116] [Preprocessor.java:241] [main] Processing chromosome C24292 Processing chromosome C24292 INFO [2014-03-08 06:13:13,140] [Preprocessor.java:241] [main] Processing chromosome C24294 Processing chromosome C24294 INFO [2014-03-08 06:13:13,150] [Preprocessor.java:241] [main] Processing chromosome C24316 Processing chromosome C24316 INFO [2014-03-08 06:13:13,195] [Preprocessor.java:241] [main] Processing chromosome C24318 Processing chromosome C24318 INFO [2014-03-08 06:13:13,201] [Preprocessor.java:241] [main] Processing chromosome C24320 Processing chromosome C24320 INFO [2014-03-08 06:13:13,210] [Preprocessor.java:241] [main] Processing chromosome C24328 Processing chromosome C24328 INFO [2014-03-08 06:13:13,222] [Preprocessor.java:241] [main] Processing chromosome C24334 Processing chromosome C24334 INFO [2014-03-08 06:13:13,247] [Preprocessor.java:241] [main] Processing chromosome C24342 Processing chromosome C24342 INFO [2014-03-08 06:13:13,258] [Preprocessor.java:241] [main] Processing chromosome C24346 Processing chromosome C24346 INFO [2014-03-08 06:13:13,294] [Preprocessor.java:241] [main] Processing chromosome C24380 Processing chromosome C24380 INFO [2014-03-08 06:13:13,308] [Preprocessor.java:241] [main] Processing chromosome C24384 Processing chromosome C24384 INFO [2014-03-08 06:13:13,319] [Preprocessor.java:241] [main] Processing chromosome C24398 Processing chromosome C24398 INFO [2014-03-08 06:13:13,372] [Preprocessor.java:241] [main] Processing chromosome C24400 Processing chromosome C24400 INFO [2014-03-08 06:13:13,416] [Preprocessor.java:241] [main] Processing chromosome C24418 Processing chromosome C24418 INFO [2014-03-08 06:13:13,429] [Preprocessor.java:241] [main] Processing chromosome C24420 Processing chromosome C24420 INFO [2014-03-08 06:13:13,443] [Preprocessor.java:241] [main] Processing chromosome C24426 Processing chromosome C24426 INFO [2014-03-08 06:13:13,449] [Preprocessor.java:241] [main] Processing chromosome C24428 Processing chromosome C24428 INFO [2014-03-08 06:13:13,488] [Preprocessor.java:241] [main] Processing chromosome C24432 Processing chromosome C24432 INFO [2014-03-08 06:13:13,512] [Preprocessor.java:241] [main] Processing chromosome C24436 Processing chromosome C24436 INFO [2014-03-08 06:13:13,529] [Preprocessor.java:241] [main] Processing chromosome C24438 Processing chromosome C24438 INFO [2014-03-08 06:13:13,553] [Preprocessor.java:241] [main] Processing chromosome C24440 Processing chromosome C24440 INFO [2014-03-08 06:13:13,574] [Preprocessor.java:241] [main] Processing chromosome C24442 Processing chromosome C24442 INFO [2014-03-08 06:13:13,617] [Preprocessor.java:241] [main] Processing chromosome C24446 Processing chromosome C24446 INFO [2014-03-08 06:13:13,622] [Preprocessor.java:241] [main] Processing chromosome C24450 Processing chromosome C24450 INFO [2014-03-08 06:13:13,657] [Preprocessor.java:241] [main] Processing chromosome C24454 Processing chromosome C24454 INFO [2014-03-08 06:13:13,766] [Preprocessor.java:241] [main] Processing chromosome C24456 Processing chromosome C24456 INFO [2014-03-08 06:13:13,773] [Preprocessor.java:241] [main] Processing chromosome C24464 Processing chromosome C24464 INFO [2014-03-08 06:13:13,807] [Preprocessor.java:241] [main] Processing chromosome C24478 Processing chromosome C24478 INFO [2014-03-08 06:13:13,828] [Preprocessor.java:241] [main] Processing chromosome C24494 Processing chromosome C24494 INFO [2014-03-08 06:13:13,842] [Preprocessor.java:241] [main] Processing chromosome C24498 Processing chromosome C24498 INFO [2014-03-08 06:13:13,863] [Preprocessor.java:241] [main] Processing chromosome C24514 Processing chromosome C24514 INFO [2014-03-08 06:13:13,888] [Preprocessor.java:241] [main] Processing chromosome C24516 Processing chromosome C24516 INFO [2014-03-08 06:13:13,895] [Preprocessor.java:241] [main] Processing chromosome C24520 Processing chromosome C24520 INFO [2014-03-08 06:13:13,932] [Preprocessor.java:241] [main] Processing chromosome C24524 Processing chromosome C24524 INFO [2014-03-08 06:13:13,948] [Preprocessor.java:241] [main] Processing chromosome C24530 Processing chromosome C24530 INFO [2014-03-08 06:13:13,953] [Preprocessor.java:241] [main] Processing chromosome C24536 Processing chromosome C24536 INFO [2014-03-08 06:13:13,962] [Preprocessor.java:241] [main] Processing chromosome C24538 Processing chromosome C24538 INFO [2014-03-08 06:13:13,966] [Preprocessor.java:241] [main] Processing chromosome C24556 Processing chromosome C24556 INFO [2014-03-08 06:13:13,975] [Preprocessor.java:241] [main] Processing chromosome C24562 Processing chromosome C24562 INFO [2014-03-08 06:13:14,025] [Preprocessor.java:241] [main] Processing chromosome C24564 Processing chromosome C24564 INFO [2014-03-08 06:13:14,046] [Preprocessor.java:241] [main] Processing chromosome C24566 Processing chromosome C24566 INFO [2014-03-08 06:13:14,082] [Preprocessor.java:241] [main] Processing chromosome C24570 Processing chromosome C24570 INFO [2014-03-08 06:13:14,129] [Preprocessor.java:241] [main] Processing chromosome C24580 Processing chromosome C24580 INFO [2014-03-08 06:13:14,138] [Preprocessor.java:241] [main] Processing chromosome C24588 Processing chromosome C24588 INFO [2014-03-08 06:13:14,141] [Preprocessor.java:241] [main] Processing chromosome C2459 Processing chromosome C2459 INFO [2014-03-08 06:13:14,173] [Preprocessor.java:241] [main] Processing chromosome C24590 Processing chromosome C24590 INFO [2014-03-08 06:13:14,218] [Preprocessor.java:241] [main] Processing chromosome C24604 Processing chromosome C24604 INFO [2014-03-08 06:13:14,222] [Preprocessor.java:241] [main] Processing chromosome C24608 Processing chromosome C24608 INFO [2014-03-08 06:13:14,271] [Preprocessor.java:241] [main] Processing chromosome C24616 Processing chromosome C24616 INFO [2014-03-08 06:13:14,293] [Preprocessor.java:241] [main] Processing chromosome C24628 Processing chromosome C24628 INFO [2014-03-08 06:13:14,334] [Preprocessor.java:241] [main] Processing chromosome C24632 Processing chromosome C24632 INFO [2014-03-08 06:13:14,355] [Preprocessor.java:241] [main] Processing chromosome C24634 Processing chromosome C24634 INFO [2014-03-08 06:13:14,385] [Preprocessor.java:241] [main] Processing chromosome C24640 Processing chromosome C24640 INFO [2014-03-08 06:13:14,389] [Preprocessor.java:241] [main] Processing chromosome C24642 Processing chromosome C24642 INFO [2014-03-08 06:13:14,400] [Preprocessor.java:241] [main] Processing chromosome C24650 Processing chromosome C24650 INFO [2014-03-08 06:13:14,409] [Preprocessor.java:241] [main] Processing chromosome C24654 Processing chromosome C24654 INFO [2014-03-08 06:13:14,425] [Preprocessor.java:241] [main] Processing chromosome C24658 Processing chromosome C24658 INFO [2014-03-08 06:13:14,429] [Preprocessor.java:241] [main] Processing chromosome C24672 Processing chromosome C24672 INFO [2014-03-08 06:13:14,443] [Preprocessor.java:241] [main] Processing chromosome C24676 Processing chromosome C24676 INFO [2014-03-08 06:13:14,477] [Preprocessor.java:241] [main] Processing chromosome C24678 Processing chromosome C24678 INFO [2014-03-08 06:13:14,507] [Preprocessor.java:241] [main] Processing chromosome C24682 Processing chromosome C24682 INFO [2014-03-08 06:13:14,512] [Preprocessor.java:241] [main] Processing chromosome C24686 Processing chromosome C24686 INFO [2014-03-08 06:13:14,531] [Preprocessor.java:241] [main] Processing chromosome C2469 Processing chromosome C2469 INFO [2014-03-08 06:13:14,561] [Preprocessor.java:241] [main] Processing chromosome C24698 Processing chromosome C24698 INFO [2014-03-08 06:13:14,593] [Preprocessor.java:241] [main] Processing chromosome C24704 Processing chromosome C24704 INFO [2014-03-08 06:13:14,607] [Preprocessor.java:241] [main] Processing chromosome C24710 Processing chromosome C24710 INFO [2014-03-08 06:13:14,630] [Preprocessor.java:241] [main] Processing chromosome C24718 Processing chromosome C24718 INFO [2014-03-08 06:13:14,674] [Preprocessor.java:241] [main] Processing chromosome C24724 Processing chromosome C24724 INFO [2014-03-08 06:13:14,703] [Preprocessor.java:241] [main] Processing chromosome C24726 Processing chromosome C24726 INFO [2014-03-08 06:13:14,709] [Preprocessor.java:241] [main] Processing chromosome C24734 Processing chromosome C24734 INFO [2014-03-08 06:13:14,736] [Preprocessor.java:241] [main] Processing chromosome C24740 Processing chromosome C24740 INFO [2014-03-08 06:13:14,749] [Preprocessor.java:241] [main] Processing chromosome C24744 Processing chromosome C24744 INFO [2014-03-08 06:13:14,765] [Preprocessor.java:241] [main] Processing chromosome C24748 Processing chromosome C24748 INFO [2014-03-08 06:13:14,786] [Preprocessor.java:241] [main] Processing chromosome C24750 Processing chromosome C24750 INFO [2014-03-08 06:13:14,813] [Preprocessor.java:241] [main] Processing chromosome C24756 Processing chromosome C24756 INFO [2014-03-08 06:13:14,818] [Preprocessor.java:241] [main] Processing chromosome C24758 Processing chromosome C24758 INFO [2014-03-08 06:13:14,841] [Preprocessor.java:241] [main] Processing chromosome C24766 Processing chromosome C24766 INFO [2014-03-08 06:13:14,849] [Preprocessor.java:241] [main] Processing chromosome C24778 Processing chromosome C24778 INFO [2014-03-08 06:13:14,852] [Preprocessor.java:241] [main] Processing chromosome C2479 Processing chromosome C2479 INFO [2014-03-08 06:13:14,926] [Preprocessor.java:241] [main] Processing chromosome C24790 Processing chromosome C24790 INFO [2014-03-08 06:13:14,973] [Preprocessor.java:241] [main] Processing chromosome C24804 Processing chromosome C24804 INFO [2014-03-08 06:13:15,017] [Preprocessor.java:241] [main] Processing chromosome C24814 Processing chromosome C24814 INFO [2014-03-08 06:13:15,038] [Preprocessor.java:241] [main] Processing chromosome C24818 Processing chromosome C24818 INFO [2014-03-08 06:13:15,086] [Preprocessor.java:241] [main] Processing chromosome C24820 Processing chromosome C24820 INFO [2014-03-08 06:13:15,103] [Preprocessor.java:241] [main] Processing chromosome C24824 Processing chromosome C24824 INFO [2014-03-08 06:13:15,154] [Preprocessor.java:241] [main] Processing chromosome C24826 Processing chromosome C24826 INFO [2014-03-08 06:13:15,198] [Preprocessor.java:241] [main] Processing chromosome C24828 Processing chromosome C24828 INFO [2014-03-08 06:13:15,214] [Preprocessor.java:241] [main] Processing chromosome C24850 Processing chromosome C24850 INFO [2014-03-08 06:13:15,226] [Preprocessor.java:241] [main] Processing chromosome C24862 Processing chromosome C24862 INFO [2014-03-08 06:13:15,248] [Preprocessor.java:241] [main] Processing chromosome C24868 Processing chromosome C24868 INFO [2014-03-08 06:13:15,280] [Preprocessor.java:241] [main] Processing chromosome C24874 Processing chromosome C24874 INFO [2014-03-08 06:13:15,321] [Preprocessor.java:241] [main] Processing chromosome C24888 Processing chromosome C24888 INFO [2014-03-08 06:13:15,357] [Preprocessor.java:241] [main] Processing chromosome C24892 Processing chromosome C24892 INFO [2014-03-08 06:13:15,361] [Preprocessor.java:241] [main] Processing chromosome C24900 Processing chromosome C24900 INFO [2014-03-08 06:13:15,363] [Preprocessor.java:241] [main] Processing chromosome C24902 Processing chromosome C24902 INFO [2014-03-08 06:13:15,376] [Preprocessor.java:241] [main] Processing chromosome C24910 Processing chromosome C24910 INFO [2014-03-08 06:13:15,400] [Preprocessor.java:241] [main] Processing chromosome C24914 Processing chromosome C24914 INFO [2014-03-08 06:13:15,406] [Preprocessor.java:241] [main] Processing chromosome C24916 Processing chromosome C24916 INFO [2014-03-08 06:13:15,473] [Preprocessor.java:241] [main] Processing chromosome C24920 Processing chromosome C24920 INFO [2014-03-08 06:13:15,479] [Preprocessor.java:241] [main] Processing chromosome C24932 Processing chromosome C24932 INFO [2014-03-08 06:13:15,508] [Preprocessor.java:241] [main] Processing chromosome C24934 Processing chromosome C24934 INFO [2014-03-08 06:13:15,540] [Preprocessor.java:241] [main] Processing chromosome C24942 Processing chromosome C24942 INFO [2014-03-08 06:13:15,566] [Preprocessor.java:241] [main] Processing chromosome C24952 Processing chromosome C24952 INFO [2014-03-08 06:13:15,612] [Preprocessor.java:241] [main] Processing chromosome C24954 Processing chromosome C24954 INFO [2014-03-08 06:13:15,616] [Preprocessor.java:241] [main] Processing chromosome C24960 Processing chromosome C24960 INFO [2014-03-08 06:13:15,649] [Preprocessor.java:241] [main] Processing chromosome C24962 Processing chromosome C24962 INFO [2014-03-08 06:13:15,683] [Preprocessor.java:241] [main] Processing chromosome C24964 Processing chromosome C24964 INFO [2014-03-08 06:13:15,696] [Preprocessor.java:241] [main] Processing chromosome C24966 Processing chromosome C24966 INFO [2014-03-08 06:13:15,715] [Preprocessor.java:241] [main] Processing chromosome C2497 Processing chromosome C2497 INFO [2014-03-08 06:13:15,772] [Preprocessor.java:241] [main] Processing chromosome C24974 Processing chromosome C24974 INFO [2014-03-08 06:13:15,796] [Preprocessor.java:241] [main] Processing chromosome C24984 Processing chromosome C24984 INFO [2014-03-08 06:13:15,826] [Preprocessor.java:241] [main] Processing chromosome C24994 Processing chromosome C24994 INFO [2014-03-08 06:13:15,890] [Preprocessor.java:241] [main] Processing chromosome C25 Processing chromosome C25 INFO [2014-03-08 06:13:15,923] [Preprocessor.java:241] [main] Processing chromosome C25014 Processing chromosome C25014 INFO [2014-03-08 06:13:15,951] [Preprocessor.java:241] [main] Processing chromosome C25026 Processing chromosome C25026 INFO [2014-03-08 06:13:15,973] [Preprocessor.java:241] [main] Processing chromosome C25032 Processing chromosome C25032 INFO [2014-03-08 06:13:15,985] [Preprocessor.java:241] [main] Processing chromosome C25038 Processing chromosome C25038 INFO [2014-03-08 06:13:15,988] [Preprocessor.java:241] [main] Processing chromosome C25042 Processing chromosome C25042 INFO [2014-03-08 06:13:15,991] [Preprocessor.java:241] [main] Processing chromosome C25050 Processing chromosome C25050 INFO [2014-03-08 06:13:15,996] [Preprocessor.java:241] [main] Processing chromosome C25052 Processing chromosome C25052 INFO [2014-03-08 06:13:16,001] [Preprocessor.java:241] [main] Processing chromosome C25054 Processing chromosome C25054 INFO [2014-03-08 06:13:16,184] [Preprocessor.java:241] [main] Processing chromosome C25064 Processing chromosome C25064 INFO [2014-03-08 06:13:16,191] [Preprocessor.java:241] [main] Processing chromosome C25066 Processing chromosome C25066 INFO [2014-03-08 06:13:16,204] [Preprocessor.java:241] [main] Processing chromosome C25074 Processing chromosome C25074 INFO [2014-03-08 06:13:16,217] [Preprocessor.java:241] [main] Processing chromosome C25084 Processing chromosome C25084 INFO [2014-03-08 06:13:16,222] [Preprocessor.java:241] [main] Processing chromosome C25088 Processing chromosome C25088 INFO [2014-03-08 06:13:16,225] [Preprocessor.java:241] [main] Processing chromosome C25096 Processing chromosome C25096 INFO [2014-03-08 06:13:16,236] [Preprocessor.java:241] [main] Processing chromosome C25102 Processing chromosome C25102 INFO [2014-03-08 06:13:16,267] [Preprocessor.java:241] [main] Processing chromosome C25106 Processing chromosome C25106 INFO [2014-03-08 06:13:16,332] [Preprocessor.java:241] [main] Processing chromosome C25108 Processing chromosome C25108 INFO [2014-03-08 06:13:16,368] [Preprocessor.java:241] [main] Processing chromosome C25116 Processing chromosome C25116 INFO [2014-03-08 06:13:16,401] [Preprocessor.java:241] [main] Processing chromosome C25118 Processing chromosome C25118 INFO [2014-03-08 06:13:16,404] [Preprocessor.java:241] [main] Processing chromosome C25124 Processing chromosome C25124 INFO [2014-03-08 06:13:16,427] [Preprocessor.java:241] [main] Processing chromosome C25126 Processing chromosome C25126 INFO [2014-03-08 06:13:16,432] [Preprocessor.java:241] [main] Processing chromosome C25140 Processing chromosome C25140 INFO [2014-03-08 06:13:16,446] [Preprocessor.java:241] [main] Processing chromosome C25178 Processing chromosome C25178 INFO [2014-03-08 06:13:16,494] [Preprocessor.java:241] [main] Processing chromosome C25180 Processing chromosome C25180 INFO [2014-03-08 06:13:16,525] [Preprocessor.java:241] [main] Processing chromosome C25184 Processing chromosome C25184 INFO [2014-03-08 06:13:16,530] [Preprocessor.java:241] [main] Processing chromosome C25190 Processing chromosome C25190 INFO [2014-03-08 06:13:16,532] [Preprocessor.java:241] [main] Processing chromosome C25196 Processing chromosome C25196 INFO [2014-03-08 06:13:16,545] [Preprocessor.java:241] [main] Processing chromosome C25206 Processing chromosome C25206 INFO [2014-03-08 06:13:16,556] [Preprocessor.java:241] [main] Processing chromosome C25214 Processing chromosome C25214 INFO [2014-03-08 06:13:16,567] [Preprocessor.java:241] [main] Processing chromosome C25218 Processing chromosome C25218 INFO [2014-03-08 06:13:16,579] [Preprocessor.java:241] [main] Processing chromosome C25228 Processing chromosome C25228 INFO [2014-03-08 06:13:16,598] [Preprocessor.java:241] [main] Processing chromosome C25230 Processing chromosome C25230 INFO [2014-03-08 06:13:16,630] [Preprocessor.java:241] [main] Processing chromosome C25248 Processing chromosome C25248 INFO [2014-03-08 06:13:16,638] [Preprocessor.java:241] [main] Processing chromosome C25274 Processing chromosome C25274 INFO [2014-03-08 06:13:16,649] [Preprocessor.java:241] [main] Processing chromosome C25290 Processing chromosome C25290 INFO [2014-03-08 06:13:16,690] [Preprocessor.java:241] [main] Processing chromosome C25298 Processing chromosome C25298 INFO [2014-03-08 06:13:16,710] [Preprocessor.java:241] [main] Processing chromosome C25310 Processing chromosome C25310 INFO [2014-03-08 06:13:16,742] [Preprocessor.java:241] [main] Processing chromosome C25314 Processing chromosome C25314 INFO [2014-03-08 06:13:16,772] [Preprocessor.java:241] [main] Processing chromosome C25324 Processing chromosome C25324 INFO [2014-03-08 06:13:16,780] [Preprocessor.java:241] [main] Processing chromosome C25328 Processing chromosome C25328 INFO [2014-03-08 06:13:16,803] [Preprocessor.java:241] [main] Processing chromosome C2533 Processing chromosome C2533 INFO [2014-03-08 06:13:16,858] [Preprocessor.java:241] [main] Processing chromosome C25334 Processing chromosome C25334 INFO [2014-03-08 06:13:16,865] [Preprocessor.java:241] [main] Processing chromosome C25336 Processing chromosome C25336 INFO [2014-03-08 06:13:16,870] [Preprocessor.java:241] [main] Processing chromosome C25344 Processing chromosome C25344 INFO [2014-03-08 06:13:16,888] [Preprocessor.java:241] [main] Processing chromosome C25346 Processing chromosome C25346 INFO [2014-03-08 06:13:16,898] [Preprocessor.java:241] [main] Processing chromosome C25352 Processing chromosome C25352 INFO [2014-03-08 06:13:16,912] [Preprocessor.java:241] [main] Processing chromosome C25360 Processing chromosome C25360 INFO [2014-03-08 06:13:16,939] [Preprocessor.java:241] [main] Processing chromosome C25384 Processing chromosome C25384 INFO [2014-03-08 06:13:16,948] [Preprocessor.java:241] [main] Processing chromosome C25394 Processing chromosome C25394 INFO [2014-03-08 06:13:16,966] [Preprocessor.java:241] [main] Processing chromosome C25404 Processing chromosome C25404 INFO [2014-03-08 06:13:16,978] [Preprocessor.java:241] [main] Processing chromosome C2541 Processing chromosome C2541 INFO [2014-03-08 06:13:17,010] [Preprocessor.java:241] [main] Processing chromosome C25414 Processing chromosome C25414 INFO [2014-03-08 06:13:17,040] [Preprocessor.java:241] [main] Processing chromosome C25418 Processing chromosome C25418 INFO [2014-03-08 06:13:17,053] [Preprocessor.java:241] [main] Processing chromosome C25420 Processing chromosome C25420 INFO [2014-03-08 06:13:17,082] [Preprocessor.java:241] [main] Processing chromosome C25424 Processing chromosome C25424 INFO [2014-03-08 06:13:17,093] [Preprocessor.java:241] [main] Processing chromosome C2543 Processing chromosome C2543 INFO [2014-03-08 06:13:17,154] [Preprocessor.java:241] [main] Processing chromosome C25444 Processing chromosome C25444 INFO [2014-03-08 06:13:17,157] [Preprocessor.java:241] [main] Processing chromosome C25448 Processing chromosome C25448 INFO [2014-03-08 06:13:17,189] [Preprocessor.java:241] [main] Processing chromosome C2545 Processing chromosome C2545 INFO [2014-03-08 06:13:17,296] [Preprocessor.java:241] [main] Processing chromosome C25456 Processing chromosome C25456 INFO [2014-03-08 06:13:17,304] [Preprocessor.java:241] [main] Processing chromosome C25466 Processing chromosome C25466 INFO [2014-03-08 06:13:17,316] [Preprocessor.java:241] [main] Processing chromosome C25468 Processing chromosome C25468 INFO [2014-03-08 06:13:17,326] [Preprocessor.java:241] [main] Processing chromosome C25470 Processing chromosome C25470 INFO [2014-03-08 06:13:17,349] [Preprocessor.java:241] [main] Processing chromosome C25494 Processing chromosome C25494 INFO [2014-03-08 06:13:17,369] [Preprocessor.java:241] [main] Processing chromosome C25496 Processing chromosome C25496 INFO [2014-03-08 06:13:17,375] [Preprocessor.java:241] [main] Processing chromosome C25498 Processing chromosome C25498 INFO [2014-03-08 06:13:17,402] [Preprocessor.java:241] [main] Processing chromosome C25504 Processing chromosome C25504 INFO [2014-03-08 06:13:17,435] [Preprocessor.java:241] [main] Processing chromosome C25528 Processing chromosome C25528 INFO [2014-03-08 06:13:17,473] [Preprocessor.java:241] [main] Processing chromosome C25540 Processing chromosome C25540 INFO [2014-03-08 06:13:17,493] [Preprocessor.java:241] [main] Processing chromosome C25542 Processing chromosome C25542 INFO [2014-03-08 06:13:17,508] [Preprocessor.java:241] [main] Processing chromosome C25544 Processing chromosome C25544 INFO [2014-03-08 06:13:17,521] [Preprocessor.java:241] [main] Processing chromosome C25546 Processing chromosome C25546 INFO [2014-03-08 06:13:17,538] [Preprocessor.java:241] [main] Processing chromosome C25550 Processing chromosome C25550 INFO [2014-03-08 06:13:17,572] [Preprocessor.java:241] [main] Processing chromosome C25556 Processing chromosome C25556 INFO [2014-03-08 06:13:17,575] [Preprocessor.java:241] [main] Processing chromosome C25558 Processing chromosome C25558 INFO [2014-03-08 06:13:17,596] [Preprocessor.java:241] [main] Processing chromosome C25564 Processing chromosome C25564 INFO [2014-03-08 06:13:17,623] [Preprocessor.java:241] [main] Processing chromosome C25572 Processing chromosome C25572 INFO [2014-03-08 06:13:17,632] [Preprocessor.java:241] [main] Processing chromosome C25580 Processing chromosome C25580 INFO [2014-03-08 06:13:17,665] [Preprocessor.java:241] [main] Processing chromosome C25592 Processing chromosome C25592 INFO [2014-03-08 06:13:17,677] [Preprocessor.java:241] [main] Processing chromosome C25596 Processing chromosome C25596 INFO [2014-03-08 06:13:17,692] [Preprocessor.java:241] [main] Processing chromosome C25612 Processing chromosome C25612 INFO [2014-03-08 06:13:17,698] [Preprocessor.java:241] [main] Processing chromosome C25614 Processing chromosome C25614 INFO [2014-03-08 06:13:17,706] [Preprocessor.java:241] [main] Processing chromosome C25620 Processing chromosome C25620 INFO [2014-03-08 06:13:17,727] [Preprocessor.java:241] [main] Processing chromosome C25630 Processing chromosome C25630 INFO [2014-03-08 06:13:17,748] [Preprocessor.java:241] [main] Processing chromosome C25634 Processing chromosome C25634 INFO [2014-03-08 06:13:17,778] [Preprocessor.java:241] [main] Processing chromosome C25644 Processing chromosome C25644 INFO [2014-03-08 06:13:17,832] [Preprocessor.java:241] [main] Processing chromosome C25648 Processing chromosome C25648 INFO [2014-03-08 06:13:17,854] [Preprocessor.java:241] [main] Processing chromosome C25652 Processing chromosome C25652 INFO [2014-03-08 06:13:17,861] [Preprocessor.java:241] [main] Processing chromosome C25654 Processing chromosome C25654 INFO [2014-03-08 06:13:17,885] [Preprocessor.java:241] [main] Processing chromosome C25662 Processing chromosome C25662 INFO [2014-03-08 06:13:17,888] [Preprocessor.java:241] [main] Processing chromosome C25670 Processing chromosome C25670 INFO [2014-03-08 06:13:17,895] [Preprocessor.java:241] [main] Processing chromosome C25676 Processing chromosome C25676 INFO [2014-03-08 06:13:17,904] [Preprocessor.java:241] [main] Processing chromosome C25678 Processing chromosome C25678 INFO [2014-03-08 06:13:17,922] [Preprocessor.java:241] [main] Processing chromosome C25698 Processing chromosome C25698 INFO [2014-03-08 06:13:17,954] [Preprocessor.java:241] [main] Processing chromosome C25706 Processing chromosome C25706 INFO [2014-03-08 06:13:17,963] [Preprocessor.java:241] [main] Processing chromosome C25708 Processing chromosome C25708 INFO [2014-03-08 06:13:17,974] [Preprocessor.java:241] [main] Processing chromosome C25722 Processing chromosome C25722 INFO [2014-03-08 06:13:17,999] [Preprocessor.java:241] [main] Processing chromosome C25730 Processing chromosome C25730 INFO [2014-03-08 06:13:18,003] [Preprocessor.java:241] [main] Processing chromosome C25734 Processing chromosome C25734 INFO [2014-03-08 06:13:18,031] [Preprocessor.java:241] [main] Processing chromosome C25740 Processing chromosome C25740 INFO [2014-03-08 06:13:18,058] [Preprocessor.java:241] [main] Processing chromosome C25744 Processing chromosome C25744 INFO [2014-03-08 06:13:18,092] [Preprocessor.java:241] [main] Processing chromosome C25748 Processing chromosome C25748 INFO [2014-03-08 06:13:18,098] [Preprocessor.java:241] [main] Processing chromosome C25752 Processing chromosome C25752 INFO [2014-03-08 06:13:18,109] [Preprocessor.java:241] [main] Processing chromosome C25756 Processing chromosome C25756 INFO [2014-03-08 06:13:18,123] [Preprocessor.java:241] [main] Processing chromosome C25758 Processing chromosome C25758 INFO [2014-03-08 06:13:18,149] [Preprocessor.java:241] [main] Processing chromosome C25762 Processing chromosome C25762 INFO [2014-03-08 06:13:18,179] [Preprocessor.java:241] [main] Processing chromosome C25766 Processing chromosome C25766 INFO [2014-03-08 06:13:18,183] [Preprocessor.java:241] [main] Processing chromosome C25778 Processing chromosome C25778 INFO [2014-03-08 06:13:18,192] [Preprocessor.java:241] [main] Processing chromosome C25780 Processing chromosome C25780 INFO [2014-03-08 06:13:18,196] [Preprocessor.java:241] [main] Processing chromosome C25792 Processing chromosome C25792 INFO [2014-03-08 06:13:18,233] [Preprocessor.java:241] [main] Processing chromosome C25804 Processing chromosome C25804 INFO [2014-03-08 06:13:18,269] [Preprocessor.java:241] [main] Processing chromosome C25818 Processing chromosome C25818 INFO [2014-03-08 06:13:18,290] [Preprocessor.java:241] [main] Processing chromosome C25820 Processing chromosome C25820 INFO [2014-03-08 06:13:18,293] [Preprocessor.java:241] [main] Processing chromosome C25822 Processing chromosome C25822 INFO [2014-03-08 06:13:18,317] [Preprocessor.java:241] [main] Processing chromosome C25826 Processing chromosome C25826 INFO [2014-03-08 06:13:18,332] [Preprocessor.java:241] [main] Processing chromosome C25828 Processing chromosome C25828 INFO [2014-03-08 06:13:18,379] [Preprocessor.java:241] [main] Processing chromosome C2583 Processing chromosome C2583 INFO [2014-03-08 06:13:18,411] [Preprocessor.java:241] [main] Processing chromosome C25834 Processing chromosome C25834 INFO [2014-03-08 06:13:18,472] [Preprocessor.java:241] [main] Processing chromosome C25838 Processing chromosome C25838 INFO [2014-03-08 06:13:18,480] [Preprocessor.java:241] [main] Processing chromosome C25858 Processing chromosome C25858 INFO [2014-03-08 06:13:18,495] [Preprocessor.java:241] [main] Processing chromosome C25860 Processing chromosome C25860 INFO [2014-03-08 06:13:18,498] [Preprocessor.java:241] [main] Processing chromosome C25864 Processing chromosome C25864 INFO [2014-03-08 06:13:18,520] [Preprocessor.java:241] [main] Processing chromosome C25866 Processing chromosome C25866 INFO [2014-03-08 06:13:18,542] [Preprocessor.java:241] [main] Processing chromosome C25876 Processing chromosome C25876 INFO [2014-03-08 06:13:18,586] [Preprocessor.java:241] [main] Processing chromosome C25882 Processing chromosome C25882 INFO [2014-03-08 06:13:18,590] [Preprocessor.java:241] [main] Processing chromosome C25896 Processing chromosome C25896 INFO [2014-03-08 06:13:18,630] [Preprocessor.java:241] [main] Processing chromosome C25898 Processing chromosome C25898 INFO [2014-03-08 06:13:18,654] [Preprocessor.java:241] [main] Processing chromosome C25900 Processing chromosome C25900 INFO [2014-03-08 06:13:18,659] [Preprocessor.java:241] [main] Processing chromosome C25912 Processing chromosome C25912 INFO [2014-03-08 06:13:18,693] [Preprocessor.java:241] [main] Processing chromosome C25928 Processing chromosome C25928 INFO [2014-03-08 06:13:18,720] [Preprocessor.java:241] [main] Processing chromosome C25930 Processing chromosome C25930 INFO [2014-03-08 06:13:18,730] [Preprocessor.java:241] [main] Processing chromosome C25932 Processing chromosome C25932 INFO [2014-03-08 06:13:18,773] [Preprocessor.java:241] [main] Processing chromosome C25940 Processing chromosome C25940 INFO [2014-03-08 06:13:18,823] [Preprocessor.java:241] [main] Processing chromosome C25946 Processing chromosome C25946 INFO [2014-03-08 06:13:18,831] [Preprocessor.java:241] [main] Processing chromosome C25954 Processing chromosome C25954 INFO [2014-03-08 06:13:18,851] [Preprocessor.java:241] [main] Processing chromosome C25962 Processing chromosome C25962 INFO [2014-03-08 06:13:18,871] [Preprocessor.java:241] [main] Processing chromosome C25966 Processing chromosome C25966 INFO [2014-03-08 06:13:18,890] [Preprocessor.java:241] [main] Processing chromosome C25968 Processing chromosome C25968 INFO [2014-03-08 06:13:18,940] [Preprocessor.java:241] [main] Processing chromosome C25970 Processing chromosome C25970 INFO [2014-03-08 06:13:18,957] [Preprocessor.java:241] [main] Processing chromosome C25972 Processing chromosome C25972 INFO [2014-03-08 06:13:18,969] [Preprocessor.java:241] [main] Processing chromosome C25980 Processing chromosome C25980 INFO [2014-03-08 06:13:19,025] [Preprocessor.java:241] [main] Processing chromosome C25990 Processing chromosome C25990 INFO [2014-03-08 06:13:19,057] [Preprocessor.java:241] [main] Processing chromosome C25998 Processing chromosome C25998 INFO [2014-03-08 06:13:19,095] [Preprocessor.java:241] [main] Processing chromosome C26002 Processing chromosome C26002 INFO [2014-03-08 06:13:19,119] [Preprocessor.java:241] [main] Processing chromosome C26004 Processing chromosome C26004 INFO [2014-03-08 06:13:19,156] [Preprocessor.java:241] [main] Processing chromosome C26010 Processing chromosome C26010 INFO [2014-03-08 06:13:19,165] [Preprocessor.java:241] [main] Processing chromosome C26018 Processing chromosome C26018 INFO [2014-03-08 06:13:19,179] [Preprocessor.java:241] [main] Processing chromosome C26032 Processing chromosome C26032 INFO [2014-03-08 06:13:19,198] [Preprocessor.java:241] [main] Processing chromosome C26040 Processing chromosome C26040 INFO [2014-03-08 06:13:19,221] [Preprocessor.java:241] [main] Processing chromosome C26054 Processing chromosome C26054 INFO [2014-03-08 06:13:19,239] [Preprocessor.java:241] [main] Processing chromosome C26066 Processing chromosome C26066 INFO [2014-03-08 06:13:19,251] [Preprocessor.java:241] [main] Processing chromosome C26070 Processing chromosome C26070 INFO [2014-03-08 06:13:19,257] [Preprocessor.java:241] [main] Processing chromosome C26078 Processing chromosome C26078 INFO [2014-03-08 06:13:19,286] [Preprocessor.java:241] [main] Processing chromosome C26082 Processing chromosome C26082 INFO [2014-03-08 06:13:19,311] [Preprocessor.java:241] [main] Processing chromosome C26084 Processing chromosome C26084 INFO [2014-03-08 06:13:19,336] [Preprocessor.java:241] [main] Processing chromosome C26088 Processing chromosome C26088 INFO [2014-03-08 06:13:19,343] [Preprocessor.java:241] [main] Processing chromosome C26094 Processing chromosome C26094 INFO [2014-03-08 06:13:19,345] [Preprocessor.java:241] [main] Processing chromosome C26096 Processing chromosome C26096 INFO [2014-03-08 06:13:19,353] [Preprocessor.java:241] [main] Processing chromosome C26102 Processing chromosome C26102 INFO [2014-03-08 06:13:19,390] [Preprocessor.java:241] [main] Processing chromosome C26108 Processing chromosome C26108 INFO [2014-03-08 06:13:19,415] [Preprocessor.java:241] [main] Processing chromosome C26118 Processing chromosome C26118 INFO [2014-03-08 06:13:19,443] [Preprocessor.java:241] [main] Processing chromosome C26122 Processing chromosome C26122 INFO [2014-03-08 06:13:19,446] [Preprocessor.java:241] [main] Processing chromosome C26128 Processing chromosome C26128 INFO [2014-03-08 06:13:19,456] [Preprocessor.java:241] [main] Processing chromosome C26134 Processing chromosome C26134 INFO [2014-03-08 06:13:19,583] [Preprocessor.java:241] [main] Processing chromosome C26140 Processing chromosome C26140 INFO [2014-03-08 06:13:19,599] [Preprocessor.java:241] [main] Processing chromosome C26148 Processing chromosome C26148 INFO [2014-03-08 06:13:19,633] [Preprocessor.java:241] [main] Processing chromosome C26150 Processing chromosome C26150 INFO [2014-03-08 06:13:19,646] [Preprocessor.java:241] [main] Processing chromosome C26152 Processing chromosome C26152 INFO [2014-03-08 06:13:19,649] [Preprocessor.java:241] [main] Processing chromosome C26154 Processing chromosome C26154 INFO [2014-03-08 06:13:19,652] [Preprocessor.java:241] [main] Processing chromosome C26156 Processing chromosome C26156 INFO [2014-03-08 06:13:19,666] [Preprocessor.java:241] [main] Processing chromosome C26168 Processing chromosome C26168 INFO [2014-03-08 06:13:19,710] [Preprocessor.java:241] [main] Processing chromosome C26170 Processing chromosome C26170 INFO [2014-03-08 06:13:19,715] [Preprocessor.java:241] [main] Processing chromosome C26174 Processing chromosome C26174 INFO [2014-03-08 06:13:19,718] [Preprocessor.java:241] [main] Processing chromosome C26180 Processing chromosome C26180 INFO [2014-03-08 06:13:19,727] [Preprocessor.java:241] [main] Processing chromosome C26184 Processing chromosome C26184 INFO [2014-03-08 06:13:19,744] [Preprocessor.java:241] [main] Processing chromosome C26190 Processing chromosome C26190 INFO [2014-03-08 06:13:19,753] [Preprocessor.java:241] [main] Processing chromosome C26192 Processing chromosome C26192 INFO [2014-03-08 06:13:19,798] [Preprocessor.java:241] [main] Processing chromosome C26196 Processing chromosome C26196 INFO [2014-03-08 06:13:19,812] [Preprocessor.java:241] [main] Processing chromosome C26198 Processing chromosome C26198 INFO [2014-03-08 06:13:19,832] [Preprocessor.java:241] [main] Processing chromosome C26204 Processing chromosome C26204 INFO [2014-03-08 06:13:19,836] [Preprocessor.java:241] [main] Processing chromosome C26206 Processing chromosome C26206 INFO [2014-03-08 06:13:19,852] [Preprocessor.java:241] [main] Processing chromosome C26212 Processing chromosome C26212 INFO [2014-03-08 06:13:19,881] [Preprocessor.java:241] [main] Processing chromosome C26226 Processing chromosome C26226 INFO [2014-03-08 06:13:19,890] [Preprocessor.java:241] [main] Processing chromosome C26228 Processing chromosome C26228 INFO [2014-03-08 06:13:19,905] [Preprocessor.java:241] [main] Processing chromosome C26230 Processing chromosome C26230 INFO [2014-03-08 06:13:19,921] [Preprocessor.java:241] [main] Processing chromosome C26236 Processing chromosome C26236 INFO [2014-03-08 06:13:19,931] [Preprocessor.java:241] [main] Processing chromosome C26238 Processing chromosome C26238 INFO [2014-03-08 06:13:19,940] [Preprocessor.java:241] [main] Processing chromosome C26240 Processing chromosome C26240 INFO [2014-03-08 06:13:19,959] [Preprocessor.java:241] [main] Processing chromosome C26244 Processing chromosome C26244 INFO [2014-03-08 06:13:19,987] [Preprocessor.java:241] [main] Processing chromosome C26246 Processing chromosome C26246 INFO [2014-03-08 06:13:20,005] [Preprocessor.java:241] [main] Processing chromosome C26256 Processing chromosome C26256 INFO [2014-03-08 06:13:20,014] [Preprocessor.java:241] [main] Processing chromosome C26262 Processing chromosome C26262 INFO [2014-03-08 06:13:20,017] [Preprocessor.java:241] [main] Processing chromosome C26268 Processing chromosome C26268 INFO [2014-03-08 06:13:20,057] [Preprocessor.java:241] [main] Processing chromosome C26276 Processing chromosome C26276 INFO [2014-03-08 06:13:20,087] [Preprocessor.java:241] [main] Processing chromosome C26278 Processing chromosome C26278 INFO [2014-03-08 06:13:20,091] [Preprocessor.java:241] [main] Processing chromosome C26292 Processing chromosome C26292 INFO [2014-03-08 06:13:20,135] [Preprocessor.java:241] [main] Processing chromosome C26302 Processing chromosome C26302 INFO [2014-03-08 06:13:20,138] [Preprocessor.java:241] [main] Processing chromosome C26306 Processing chromosome C26306 INFO [2014-03-08 06:13:20,173] [Preprocessor.java:241] [main] Processing chromosome C26312 Processing chromosome C26312 INFO [2014-03-08 06:13:20,185] [Preprocessor.java:241] [main] Processing chromosome C26318 Processing chromosome C26318 INFO [2014-03-08 06:13:20,205] [Preprocessor.java:241] [main] Processing chromosome C26320 Processing chromosome C26320 INFO [2014-03-08 06:13:20,218] [Preprocessor.java:241] [main] Processing chromosome C26336 Processing chromosome C26336 INFO [2014-03-08 06:13:20,232] [Preprocessor.java:241] [main] Processing chromosome C26338 Processing chromosome C26338 INFO [2014-03-08 06:13:20,236] [Preprocessor.java:241] [main] Processing chromosome C26342 Processing chromosome C26342 INFO [2014-03-08 06:13:20,255] [Preprocessor.java:241] [main] Processing chromosome C26344 Processing chromosome C26344 INFO [2014-03-08 06:13:20,259] [Preprocessor.java:241] [main] Processing chromosome C26352 Processing chromosome C26352 INFO [2014-03-08 06:13:20,261] [Preprocessor.java:241] [main] Processing chromosome C26354 Processing chromosome C26354 INFO [2014-03-08 06:13:20,278] [Preprocessor.java:241] [main] Processing chromosome C26356 Processing chromosome C26356 INFO [2014-03-08 06:13:20,281] [Preprocessor.java:241] [main] Processing chromosome C26370 Processing chromosome C26370 INFO [2014-03-08 06:13:20,288] [Preprocessor.java:241] [main] Processing chromosome C26372 Processing chromosome C26372 INFO [2014-03-08 06:13:20,294] [Preprocessor.java:241] [main] Processing chromosome C26374 Processing chromosome C26374 INFO [2014-03-08 06:13:20,304] [Preprocessor.java:241] [main] Processing chromosome C26384 Processing chromosome C26384 INFO [2014-03-08 06:13:20,322] [Preprocessor.java:241] [main] Processing chromosome C26390 Processing chromosome C26390 INFO [2014-03-08 06:13:20,356] [Preprocessor.java:241] [main] Processing chromosome C26394 Processing chromosome C26394 INFO [2014-03-08 06:13:20,363] [Preprocessor.java:241] [main] Processing chromosome C26402 Processing chromosome C26402 INFO [2014-03-08 06:13:20,377] [Preprocessor.java:241] [main] Processing chromosome C26416 Processing chromosome C26416 INFO [2014-03-08 06:13:20,387] [Preprocessor.java:241] [main] Processing chromosome C26422 Processing chromosome C26422 INFO [2014-03-08 06:13:20,402] [Preprocessor.java:241] [main] Processing chromosome C26426 Processing chromosome C26426 INFO [2014-03-08 06:13:20,414] [Preprocessor.java:241] [main] Processing chromosome C26430 Processing chromosome C26430 INFO [2014-03-08 06:13:20,422] [Preprocessor.java:241] [main] Processing chromosome C26440 Processing chromosome C26440 INFO [2014-03-08 06:13:20,430] [Preprocessor.java:241] [main] Processing chromosome C26448 Processing chromosome C26448 INFO [2014-03-08 06:13:20,444] [Preprocessor.java:241] [main] Processing chromosome C26452 Processing chromosome C26452 INFO [2014-03-08 06:13:20,465] [Preprocessor.java:241] [main] Processing chromosome C26454 Processing chromosome C26454 INFO [2014-03-08 06:13:20,508] [Preprocessor.java:241] [main] Processing chromosome C26458 Processing chromosome C26458 INFO [2014-03-08 06:13:20,523] [Preprocessor.java:241] [main] Processing chromosome C26460 Processing chromosome C26460 INFO [2014-03-08 06:13:20,538] [Preprocessor.java:241] [main] Processing chromosome C26466 Processing chromosome C26466 INFO [2014-03-08 06:13:20,557] [Preprocessor.java:241] [main] Processing chromosome C26468 Processing chromosome C26468 INFO [2014-03-08 06:13:20,560] [Preprocessor.java:241] [main] Processing chromosome C26472 Processing chromosome C26472 INFO [2014-03-08 06:13:20,569] [Preprocessor.java:241] [main] Processing chromosome C26474 Processing chromosome C26474 INFO [2014-03-08 06:13:20,581] [Preprocessor.java:241] [main] Processing chromosome C26482 Processing chromosome C26482 INFO [2014-03-08 06:13:20,590] [Preprocessor.java:241] [main] Processing chromosome C26486 Processing chromosome C26486 INFO [2014-03-08 06:13:20,616] [Preprocessor.java:241] [main] Processing chromosome C26492 Processing chromosome C26492 INFO [2014-03-08 06:13:20,637] [Preprocessor.java:241] [main] Processing chromosome C26500 Processing chromosome C26500 INFO [2014-03-08 06:13:20,660] [Preprocessor.java:241] [main] Processing chromosome C26506 Processing chromosome C26506 INFO [2014-03-08 06:13:20,697] [Preprocessor.java:241] [main] Processing chromosome C26508 Processing chromosome C26508 INFO [2014-03-08 06:13:20,723] [Preprocessor.java:241] [main] Processing chromosome C26516 Processing chromosome C26516 INFO [2014-03-08 06:13:20,764] [Preprocessor.java:241] [main] Processing chromosome C26518 Processing chromosome C26518 INFO [2014-03-08 06:13:20,772] [Preprocessor.java:241] [main] Processing chromosome C26522 Processing chromosome C26522 INFO [2014-03-08 06:13:20,807] [Preprocessor.java:241] [main] Processing chromosome C26526 Processing chromosome C26526 INFO [2014-03-08 06:13:20,830] [Preprocessor.java:241] [main] Processing chromosome C26532 Processing chromosome C26532 INFO [2014-03-08 06:13:20,853] [Preprocessor.java:241] [main] Processing chromosome C26534 Processing chromosome C26534 INFO [2014-03-08 06:13:20,879] [Preprocessor.java:241] [main] Processing chromosome C26536 Processing chromosome C26536 INFO [2014-03-08 06:13:20,935] [Preprocessor.java:241] [main] Processing chromosome C26550 Processing chromosome C26550 INFO [2014-03-08 06:13:20,945] [Preprocessor.java:241] [main] Processing chromosome C26552 Processing chromosome C26552 INFO [2014-03-08 06:13:20,950] [Preprocessor.java:241] [main] Processing chromosome C26556 Processing chromosome C26556 INFO [2014-03-08 06:13:20,955] [Preprocessor.java:241] [main] Processing chromosome C26562 Processing chromosome C26562 INFO [2014-03-08 06:13:20,978] [Preprocessor.java:241] [main] Processing chromosome C26566 Processing chromosome C26566 INFO [2014-03-08 06:13:20,999] [Preprocessor.java:241] [main] Processing chromosome C26568 Processing chromosome C26568 INFO [2014-03-08 06:13:21,038] [Preprocessor.java:241] [main] Processing chromosome C26570 Processing chromosome C26570 INFO [2014-03-08 06:13:21,051] [Preprocessor.java:241] [main] Processing chromosome C26574 Processing chromosome C26574 INFO [2014-03-08 06:13:21,054] [Preprocessor.java:241] [main] Processing chromosome C26578 Processing chromosome C26578 INFO [2014-03-08 06:13:21,097] [Preprocessor.java:241] [main] Processing chromosome C26582 Processing chromosome C26582 INFO [2014-03-08 06:13:21,105] [Preprocessor.java:241] [main] Processing chromosome C26584 Processing chromosome C26584 INFO [2014-03-08 06:13:21,141] [Preprocessor.java:241] [main] Processing chromosome C26602 Processing chromosome C26602 INFO [2014-03-08 06:13:21,156] [Preprocessor.java:241] [main] Processing chromosome C26606 Processing chromosome C26606 INFO [2014-03-08 06:13:21,161] [Preprocessor.java:241] [main] Processing chromosome C26612 Processing chromosome C26612 INFO [2014-03-08 06:13:21,181] [Preprocessor.java:241] [main] Processing chromosome C26614 Processing chromosome C26614 INFO [2014-03-08 06:13:21,203] [Preprocessor.java:241] [main] Processing chromosome C26620 Processing chromosome C26620 INFO [2014-03-08 06:13:21,208] [Preprocessor.java:241] [main] Processing chromosome C26624 Processing chromosome C26624 INFO [2014-03-08 06:13:21,230] [Preprocessor.java:241] [main] Processing chromosome C26628 Processing chromosome C26628 INFO [2014-03-08 06:13:21,236] [Preprocessor.java:241] [main] Processing chromosome C26640 Processing chromosome C26640 INFO [2014-03-08 06:13:21,251] [Preprocessor.java:241] [main] Processing chromosome C26646 Processing chromosome C26646 INFO [2014-03-08 06:13:21,265] [Preprocessor.java:241] [main] Processing chromosome C26654 Processing chromosome C26654 INFO [2014-03-08 06:13:21,293] [Preprocessor.java:241] [main] Processing chromosome C26660 Processing chromosome C26660 INFO [2014-03-08 06:13:21,298] [Preprocessor.java:241] [main] Processing chromosome C26666 Processing chromosome C26666 INFO [2014-03-08 06:13:21,307] [Preprocessor.java:241] [main] Processing chromosome C26674 Processing chromosome C26674 INFO [2014-03-08 06:13:21,344] [Preprocessor.java:241] [main] Processing chromosome C26684 Processing chromosome C26684 INFO [2014-03-08 06:13:21,366] [Preprocessor.java:241] [main] Processing chromosome C26688 Processing chromosome C26688 INFO [2014-03-08 06:13:21,384] [Preprocessor.java:241] [main] Processing chromosome C26692 Processing chromosome C26692 INFO [2014-03-08 06:13:21,396] [Preprocessor.java:241] [main] Processing chromosome C26708 Processing chromosome C26708 INFO [2014-03-08 06:13:21,407] [Preprocessor.java:241] [main] Processing chromosome C26712 Processing chromosome C26712 INFO [2014-03-08 06:13:21,432] [Preprocessor.java:241] [main] Processing chromosome C26722 Processing chromosome C26722 INFO [2014-03-08 06:13:21,447] [Preprocessor.java:241] [main] Processing chromosome C26726 Processing chromosome C26726 INFO [2014-03-08 06:13:21,457] [Preprocessor.java:241] [main] Processing chromosome C26728 Processing chromosome C26728 INFO [2014-03-08 06:13:21,468] [Preprocessor.java:241] [main] Processing chromosome C26738 Processing chromosome C26738 INFO [2014-03-08 06:13:21,484] [Preprocessor.java:241] [main] Processing chromosome C26740 Processing chromosome C26740 INFO [2014-03-08 06:13:21,504] [Preprocessor.java:241] [main] Processing chromosome C26742 Processing chromosome C26742 INFO [2014-03-08 06:13:21,535] [Preprocessor.java:241] [main] Processing chromosome C26762 Processing chromosome C26762 INFO [2014-03-08 06:13:21,550] [Preprocessor.java:241] [main] Processing chromosome C26774 Processing chromosome C26774 INFO [2014-03-08 06:13:21,554] [Preprocessor.java:241] [main] Processing chromosome C26784 Processing chromosome C26784 INFO [2014-03-08 06:13:21,556] [Preprocessor.java:241] [main] Processing chromosome C26812 Processing chromosome C26812 INFO [2014-03-08 06:13:21,595] [Preprocessor.java:241] [main] Processing chromosome C26820 Processing chromosome C26820 INFO [2014-03-08 06:13:21,640] [Preprocessor.java:241] [main] Processing chromosome C26824 Processing chromosome C26824 INFO [2014-03-08 06:13:21,660] [Preprocessor.java:241] [main] Processing chromosome C26828 Processing chromosome C26828 INFO [2014-03-08 06:13:21,668] [Preprocessor.java:241] [main] Processing chromosome C26838 Processing chromosome C26838 INFO [2014-03-08 06:13:21,689] [Preprocessor.java:241] [main] Processing chromosome C26844 Processing chromosome C26844 INFO [2014-03-08 06:13:21,715] [Preprocessor.java:241] [main] Processing chromosome C26852 Processing chromosome C26852 INFO [2014-03-08 06:13:21,724] [Preprocessor.java:241] [main] Processing chromosome C26862 Processing chromosome C26862 INFO [2014-03-08 06:13:21,745] [Preprocessor.java:241] [main] Processing chromosome C26866 Processing chromosome C26866 INFO [2014-03-08 06:13:21,771] [Preprocessor.java:241] [main] Processing chromosome C26872 Processing chromosome C26872 INFO [2014-03-08 06:13:21,790] [Preprocessor.java:241] [main] Processing chromosome C26878 Processing chromosome C26878 INFO [2014-03-08 06:13:21,796] [Preprocessor.java:241] [main] Processing chromosome C26888 Processing chromosome C26888 INFO [2014-03-08 06:13:21,805] [Preprocessor.java:241] [main] Processing chromosome C26890 Processing chromosome C26890 INFO [2014-03-08 06:13:21,827] [Preprocessor.java:241] [main] Processing chromosome C26900 Processing chromosome C26900 INFO [2014-03-08 06:13:21,833] [Preprocessor.java:241] [main] Processing chromosome C26918 Processing chromosome C26918 INFO [2014-03-08 06:13:21,845] [Preprocessor.java:241] [main] Processing chromosome C26920 Processing chromosome C26920 INFO [2014-03-08 06:13:21,853] [Preprocessor.java:241] [main] Processing chromosome C26932 Processing chromosome C26932 INFO [2014-03-08 06:13:21,868] [Preprocessor.java:241] [main] Processing chromosome C26934 Processing chromosome C26934 INFO [2014-03-08 06:13:21,886] [Preprocessor.java:241] [main] Processing chromosome C26936 Processing chromosome C26936 INFO [2014-03-08 06:13:21,944] [Preprocessor.java:241] [main] Processing chromosome C26938 Processing chromosome C26938 INFO [2014-03-08 06:13:21,982] [Preprocessor.java:241] [main] Processing chromosome C26942 Processing chromosome C26942 INFO [2014-03-08 06:13:22,024] [Preprocessor.java:241] [main] Processing chromosome C26948 Processing chromosome C26948 INFO [2014-03-08 06:13:22,044] [Preprocessor.java:241] [main] Processing chromosome C26958 Processing chromosome C26958 INFO [2014-03-08 06:13:22,047] [Preprocessor.java:241] [main] Processing chromosome C26960 Processing chromosome C26960 INFO [2014-03-08 06:13:22,053] [Preprocessor.java:241] [main] Processing chromosome C26966 Processing chromosome C26966 INFO [2014-03-08 06:13:22,112] [Preprocessor.java:241] [main] Processing chromosome C26976 Processing chromosome C26976 INFO [2014-03-08 06:13:22,140] [Preprocessor.java:241] [main] Processing chromosome C26978 Processing chromosome C26978 INFO [2014-03-08 06:13:22,149] [Preprocessor.java:241] [main] Processing chromosome C26982 Processing chromosome C26982 INFO [2014-03-08 06:13:22,163] [Preprocessor.java:241] [main] Processing chromosome C26986 Processing chromosome C26986 INFO [2014-03-08 06:13:22,166] [Preprocessor.java:241] [main] Processing chromosome C26992 Processing chromosome C26992 INFO [2014-03-08 06:13:22,187] [Preprocessor.java:241] [main] Processing chromosome C26998 Processing chromosome C26998 INFO [2014-03-08 06:13:22,192] [Preprocessor.java:241] [main] Processing chromosome C27 Processing chromosome C27 INFO [2014-03-08 06:13:22,222] [Preprocessor.java:241] [main] Processing chromosome C2701 Processing chromosome C2701 INFO [2014-03-08 06:13:22,272] [Preprocessor.java:241] [main] Processing chromosome C27016 Processing chromosome C27016 INFO [2014-03-08 06:13:22,350] [Preprocessor.java:241] [main] Processing chromosome C27020 Processing chromosome C27020 INFO [2014-03-08 06:13:22,366] [Preprocessor.java:241] [main] Processing chromosome C27026 Processing chromosome C27026 INFO [2014-03-08 06:13:22,377] [Preprocessor.java:241] [main] Processing chromosome C27038 Processing chromosome C27038 INFO [2014-03-08 06:13:22,388] [Preprocessor.java:241] [main] Processing chromosome C27052 Processing chromosome C27052 INFO [2014-03-08 06:13:22,392] [Preprocessor.java:241] [main] Processing chromosome C27054 Processing chromosome C27054 INFO [2014-03-08 06:13:22,402] [Preprocessor.java:241] [main] Processing chromosome C27058 Processing chromosome C27058 INFO [2014-03-08 06:13:22,404] [Preprocessor.java:241] [main] Processing chromosome C27066 Processing chromosome C27066 INFO [2014-03-08 06:13:22,427] [Preprocessor.java:241] [main] Processing chromosome C27086 Processing chromosome C27086 INFO [2014-03-08 06:13:22,436] [Preprocessor.java:241] [main] Processing chromosome C27092 Processing chromosome C27092 INFO [2014-03-08 06:13:22,443] [Preprocessor.java:241] [main] Processing chromosome C27100 Processing chromosome C27100 INFO [2014-03-08 06:13:22,449] [Preprocessor.java:241] [main] Processing chromosome C27102 Processing chromosome C27102 INFO [2014-03-08 06:13:22,451] [Preprocessor.java:241] [main] Processing chromosome C27106 Processing chromosome C27106 INFO [2014-03-08 06:13:22,463] [Preprocessor.java:241] [main] Processing chromosome C27116 Processing chromosome C27116 INFO [2014-03-08 06:13:22,487] [Preprocessor.java:241] [main] Processing chromosome C27118 Processing chromosome C27118 INFO [2014-03-08 06:13:22,503] [Preprocessor.java:241] [main] Processing chromosome C27132 Processing chromosome C27132 INFO [2014-03-08 06:13:22,521] [Preprocessor.java:241] [main] Processing chromosome C27154 Processing chromosome C27154 INFO [2014-03-08 06:13:22,534] [Preprocessor.java:241] [main] Processing chromosome C27158 Processing chromosome C27158 INFO [2014-03-08 06:13:22,542] [Preprocessor.java:241] [main] Processing chromosome C27160 Processing chromosome C27160 INFO [2014-03-08 06:13:22,551] [Preprocessor.java:241] [main] Processing chromosome C27162 Processing chromosome C27162 INFO [2014-03-08 06:13:22,574] [Preprocessor.java:241] [main] Processing chromosome C27168 Processing chromosome C27168 INFO [2014-03-08 06:13:22,607] [Preprocessor.java:241] [main] Processing chromosome C27176 Processing chromosome C27176 INFO [2014-03-08 06:13:22,627] [Preprocessor.java:241] [main] Processing chromosome C27178 Processing chromosome C27178 INFO [2014-03-08 06:13:22,644] [Preprocessor.java:241] [main] Processing chromosome C27196 Processing chromosome C27196 INFO [2014-03-08 06:13:22,652] [Preprocessor.java:241] [main] Processing chromosome C27210 Processing chromosome C27210 INFO [2014-03-08 06:13:22,667] [Preprocessor.java:241] [main] Processing chromosome C27218 Processing chromosome C27218 INFO [2014-03-08 06:13:22,696] [Preprocessor.java:241] [main] Processing chromosome C27230 Processing chromosome C27230 INFO [2014-03-08 06:13:22,711] [Preprocessor.java:241] [main] Processing chromosome C27242 Processing chromosome C27242 INFO [2014-03-08 06:13:22,743] [Preprocessor.java:241] [main] Processing chromosome C27244 Processing chromosome C27244 INFO [2014-03-08 06:13:22,761] [Preprocessor.java:241] [main] Processing chromosome C27258 Processing chromosome C27258 INFO [2014-03-08 06:13:22,766] [Preprocessor.java:241] [main] Processing chromosome C27268 Processing chromosome C27268 INFO [2014-03-08 06:13:22,778] [Preprocessor.java:241] [main] Processing chromosome C2727 Processing chromosome C2727 INFO [2014-03-08 06:13:22,809] [Preprocessor.java:241] [main] Processing chromosome C27272 Processing chromosome C27272 INFO [2014-03-08 06:13:22,834] [Preprocessor.java:241] [main] Processing chromosome C27276 Processing chromosome C27276 INFO [2014-03-08 06:13:22,870] [Preprocessor.java:241] [main] Processing chromosome C27282 Processing chromosome C27282 INFO [2014-03-08 06:13:22,884] [Preprocessor.java:241] [main] Processing chromosome C27284 Processing chromosome C27284 INFO [2014-03-08 06:13:22,902] [Preprocessor.java:241] [main] Processing chromosome C27296 Processing chromosome C27296 INFO [2014-03-08 06:13:22,911] [Preprocessor.java:241] [main] Processing chromosome C27304 Processing chromosome C27304 INFO [2014-03-08 06:13:22,917] [Preprocessor.java:241] [main] Processing chromosome C27310 Processing chromosome C27310 INFO [2014-03-08 06:13:22,935] [Preprocessor.java:241] [main] Processing chromosome C27314 Processing chromosome C27314 INFO [2014-03-08 06:13:22,953] [Preprocessor.java:241] [main] Processing chromosome C27320 Processing chromosome C27320 INFO [2014-03-08 06:13:22,961] [Preprocessor.java:241] [main] Processing chromosome C27342 Processing chromosome C27342 INFO [2014-03-08 06:13:22,978] [Preprocessor.java:241] [main] Processing chromosome C27356 Processing chromosome C27356 INFO [2014-03-08 06:13:22,985] [Preprocessor.java:241] [main] Processing chromosome C27358 Processing chromosome C27358 INFO [2014-03-08 06:13:22,993] [Preprocessor.java:241] [main] Processing chromosome C27360 Processing chromosome C27360 INFO [2014-03-08 06:13:23,022] [Preprocessor.java:241] [main] Processing chromosome C27364 Processing chromosome C27364 INFO [2014-03-08 06:13:23,036] [Preprocessor.java:241] [main] Processing chromosome C2737 Processing chromosome C2737 INFO [2014-03-08 06:13:23,067] [Preprocessor.java:241] [main] Processing chromosome C27378 Processing chromosome C27378 INFO [2014-03-08 06:13:23,092] [Preprocessor.java:241] [main] Processing chromosome C27386 Processing chromosome C27386 INFO [2014-03-08 06:13:23,105] [Preprocessor.java:241] [main] Processing chromosome C27394 Processing chromosome C27394 INFO [2014-03-08 06:13:23,124] [Preprocessor.java:241] [main] Processing chromosome C27400 Processing chromosome C27400 INFO [2014-03-08 06:13:23,130] [Preprocessor.java:241] [main] Processing chromosome C27410 Processing chromosome C27410 INFO [2014-03-08 06:13:23,151] [Preprocessor.java:241] [main] Processing chromosome C27412 Processing chromosome C27412 INFO [2014-03-08 06:13:23,166] [Preprocessor.java:241] [main] Processing chromosome C27428 Processing chromosome C27428 INFO [2014-03-08 06:13:23,177] [Preprocessor.java:241] [main] Processing chromosome C2743 Processing chromosome C2743 INFO [2014-03-08 06:13:23,236] [Preprocessor.java:241] [main] Processing chromosome C27432 Processing chromosome C27432 INFO [2014-03-08 06:13:23,243] [Preprocessor.java:241] [main] Processing chromosome C27444 Processing chromosome C27444 INFO [2014-03-08 06:13:23,259] [Preprocessor.java:241] [main] Processing chromosome C27446 Processing chromosome C27446 INFO [2014-03-08 06:13:23,272] [Preprocessor.java:241] [main] Processing chromosome C27452 Processing chromosome C27452 INFO [2014-03-08 06:13:23,299] [Preprocessor.java:241] [main] Processing chromosome C27460 Processing chromosome C27460 INFO [2014-03-08 06:13:23,305] [Preprocessor.java:241] [main] Processing chromosome C27462 Processing chromosome C27462 INFO [2014-03-08 06:13:23,314] [Preprocessor.java:241] [main] Processing chromosome C27478 Processing chromosome C27478 INFO [2014-03-08 06:13:23,330] [Preprocessor.java:241] [main] Processing chromosome C27480 Processing chromosome C27480 INFO [2014-03-08 06:13:23,349] [Preprocessor.java:241] [main] Processing chromosome C27482 Processing chromosome C27482 INFO [2014-03-08 06:13:23,351] [Preprocessor.java:241] [main] Processing chromosome C27498 Processing chromosome C27498 INFO [2014-03-08 06:13:23,367] [Preprocessor.java:241] [main] Processing chromosome C27500 Processing chromosome C27500 INFO [2014-03-08 06:13:23,394] [Preprocessor.java:241] [main] Processing chromosome C27510 Processing chromosome C27510 INFO [2014-03-08 06:13:23,402] [Preprocessor.java:241] [main] Processing chromosome C27526 Processing chromosome C27526 INFO [2014-03-08 06:13:23,420] [Preprocessor.java:241] [main] Processing chromosome C27530 Processing chromosome C27530 INFO [2014-03-08 06:13:23,443] [Preprocessor.java:241] [main] Processing chromosome C27552 Processing chromosome C27552 INFO [2014-03-08 06:13:23,451] [Preprocessor.java:241] [main] Processing chromosome C27556 Processing chromosome C27556 INFO [2014-03-08 06:13:23,460] [Preprocessor.java:241] [main] Processing chromosome C27558 Processing chromosome C27558 INFO [2014-03-08 06:13:23,467] [Preprocessor.java:241] [main] Processing chromosome C27566 Processing chromosome C27566 INFO [2014-03-08 06:13:23,494] [Preprocessor.java:241] [main] Processing chromosome C27570 Processing chromosome C27570 INFO [2014-03-08 06:13:23,510] [Preprocessor.java:241] [main] Processing chromosome C27578 Processing chromosome C27578 INFO [2014-03-08 06:13:23,515] [Preprocessor.java:241] [main] Processing chromosome C27580 Processing chromosome C27580 INFO [2014-03-08 06:13:23,517] [Preprocessor.java:241] [main] Processing chromosome C2761 Processing chromosome C2761 INFO [2014-03-08 06:13:23,571] [Preprocessor.java:241] [main] Processing chromosome C27612 Processing chromosome C27612 INFO [2014-03-08 06:13:23,588] [Preprocessor.java:241] [main] Processing chromosome C27614 Processing chromosome C27614 INFO [2014-03-08 06:13:23,599] [Preprocessor.java:241] [main] Processing chromosome C27630 Processing chromosome C27630 INFO [2014-03-08 06:13:23,618] [Preprocessor.java:241] [main] Processing chromosome C27638 Processing chromosome C27638 INFO [2014-03-08 06:13:23,635] [Preprocessor.java:241] [main] Processing chromosome C27640 Processing chromosome C27640 INFO [2014-03-08 06:13:23,646] [Preprocessor.java:241] [main] Processing chromosome C27644 Processing chromosome C27644 INFO [2014-03-08 06:13:23,685] [Preprocessor.java:241] [main] Processing chromosome C2765 Processing chromosome C2765 INFO [2014-03-08 06:13:23,741] [Preprocessor.java:241] [main] Processing chromosome C27668 Processing chromosome C27668 INFO [2014-03-08 06:13:23,762] [Preprocessor.java:241] [main] Processing chromosome C27688 Processing chromosome C27688 INFO [2014-03-08 06:13:23,788] [Preprocessor.java:241] [main] Processing chromosome C27692 Processing chromosome C27692 INFO [2014-03-08 06:13:23,795] [Preprocessor.java:241] [main] Processing chromosome C27694 Processing chromosome C27694 INFO [2014-03-08 06:13:23,811] [Preprocessor.java:241] [main] Processing chromosome C27696 Processing chromosome C27696 INFO [2014-03-08 06:13:23,824] [Preprocessor.java:241] [main] Processing chromosome C27698 Processing chromosome C27698 INFO [2014-03-08 06:13:23,857] [Preprocessor.java:241] [main] Processing chromosome C27700 Processing chromosome C27700 INFO [2014-03-08 06:13:23,869] [Preprocessor.java:241] [main] Processing chromosome C27706 Processing chromosome C27706 INFO [2014-03-08 06:13:23,875] [Preprocessor.java:241] [main] Processing chromosome C27712 Processing chromosome C27712 INFO [2014-03-08 06:13:23,896] [Preprocessor.java:241] [main] Processing chromosome C27718 Processing chromosome C27718 INFO [2014-03-08 06:13:23,933] [Preprocessor.java:241] [main] Processing chromosome C27722 Processing chromosome C27722 INFO [2014-03-08 06:13:23,939] [Preprocessor.java:241] [main] Processing chromosome C27726 Processing chromosome C27726 INFO [2014-03-08 06:13:23,943] [Preprocessor.java:241] [main] Processing chromosome C27732 Processing chromosome C27732 INFO [2014-03-08 06:13:23,946] [Preprocessor.java:241] [main] Processing chromosome C27742 Processing chromosome C27742 INFO [2014-03-08 06:13:23,971] [Preprocessor.java:241] [main] Processing chromosome C27746 Processing chromosome C27746 INFO [2014-03-08 06:13:23,994] [Preprocessor.java:241] [main] Processing chromosome C27748 Processing chromosome C27748 INFO [2014-03-08 06:13:23,998] [Preprocessor.java:241] [main] Processing chromosome C27754 Processing chromosome C27754 INFO [2014-03-08 06:13:24,011] [Preprocessor.java:241] [main] Processing chromosome C27762 Processing chromosome C27762 INFO [2014-03-08 06:13:24,027] [Preprocessor.java:241] [main] Processing chromosome C27770 Processing chromosome C27770 INFO [2014-03-08 06:13:24,050] [Preprocessor.java:241] [main] Processing chromosome C27778 Processing chromosome C27778 INFO [2014-03-08 06:13:24,054] [Preprocessor.java:241] [main] Processing chromosome C27784 Processing chromosome C27784 INFO [2014-03-08 06:13:24,090] [Preprocessor.java:241] [main] Processing chromosome C27792 Processing chromosome C27792 INFO [2014-03-08 06:13:24,098] [Preprocessor.java:241] [main] Processing chromosome C27794 Processing chromosome C27794 INFO [2014-03-08 06:13:24,103] [Preprocessor.java:241] [main] Processing chromosome C27812 Processing chromosome C27812 INFO [2014-03-08 06:13:24,137] [Preprocessor.java:241] [main] Processing chromosome C27816 Processing chromosome C27816 INFO [2014-03-08 06:13:24,145] [Preprocessor.java:241] [main] Processing chromosome C27830 Processing chromosome C27830 INFO [2014-03-08 06:13:24,151] [Preprocessor.java:241] [main] Processing chromosome C27836 Processing chromosome C27836 INFO [2014-03-08 06:13:24,156] [Preprocessor.java:241] [main] Processing chromosome C27850 Processing chromosome C27850 INFO [2014-03-08 06:13:24,169] [Preprocessor.java:241] [main] Processing chromosome C27874 Processing chromosome C27874 INFO [2014-03-08 06:13:24,188] [Preprocessor.java:241] [main] Processing chromosome C27882 Processing chromosome C27882 INFO [2014-03-08 06:13:24,196] [Preprocessor.java:241] [main] Processing chromosome C2789 Processing chromosome C2789 INFO [2014-03-08 06:13:24,250] [Preprocessor.java:241] [main] Processing chromosome C27902 Processing chromosome C27902 INFO [2014-03-08 06:13:24,252] [Preprocessor.java:241] [main] Processing chromosome C27928 Processing chromosome C27928 INFO [2014-03-08 06:13:24,258] [Preprocessor.java:241] [main] Processing chromosome C2793 Processing chromosome C2793 INFO [2014-03-08 06:13:24,288] [Preprocessor.java:241] [main] Processing chromosome C27944 Processing chromosome C27944 INFO [2014-03-08 06:13:24,330] [Preprocessor.java:241] [main] Processing chromosome C27954 Processing chromosome C27954 INFO [2014-03-08 06:13:24,348] [Preprocessor.java:241] [main] Processing chromosome C27962 Processing chromosome C27962 INFO [2014-03-08 06:13:24,366] [Preprocessor.java:241] [main] Processing chromosome C27964 Processing chromosome C27964 INFO [2014-03-08 06:13:24,380] [Preprocessor.java:241] [main] Processing chromosome C27966 Processing chromosome C27966 INFO [2014-03-08 06:13:24,388] [Preprocessor.java:241] [main] Processing chromosome C27984 Processing chromosome C27984 INFO [2014-03-08 06:13:24,391] [Preprocessor.java:241] [main] Processing chromosome C28002 Processing chromosome C28002 INFO [2014-03-08 06:13:24,402] [Preprocessor.java:241] [main] Processing chromosome C28004 Processing chromosome C28004 INFO [2014-03-08 06:13:24,423] [Preprocessor.java:241] [main] Processing chromosome C28006 Processing chromosome C28006 INFO [2014-03-08 06:13:24,433] [Preprocessor.java:241] [main] Processing chromosome C28016 Processing chromosome C28016 INFO [2014-03-08 06:13:24,451] [Preprocessor.java:241] [main] Processing chromosome C28026 Processing chromosome C28026 INFO [2014-03-08 06:13:24,457] [Preprocessor.java:241] [main] Processing chromosome C28030 Processing chromosome C28030 INFO [2014-03-08 06:13:24,465] [Preprocessor.java:241] [main] Processing chromosome C28036 Processing chromosome C28036 INFO [2014-03-08 06:13:24,486] [Preprocessor.java:241] [main] Processing chromosome C28044 Processing chromosome C28044 INFO [2014-03-08 06:13:24,525] [Preprocessor.java:241] [main] Processing chromosome C28062 Processing chromosome C28062 INFO [2014-03-08 06:13:24,537] [Preprocessor.java:241] [main] Processing chromosome C28064 Processing chromosome C28064 INFO [2014-03-08 06:13:24,586] [Preprocessor.java:241] [main] Processing chromosome C28070 Processing chromosome C28070 INFO [2014-03-08 06:13:24,617] [Preprocessor.java:241] [main] Processing chromosome C28076 Processing chromosome C28076 INFO [2014-03-08 06:13:24,632] [Preprocessor.java:241] [main] Processing chromosome C28082 Processing chromosome C28082 INFO [2014-03-08 06:13:24,655] [Preprocessor.java:241] [main] Processing chromosome C28090 Processing chromosome C28090 INFO [2014-03-08 06:13:24,690] [Preprocessor.java:241] [main] Processing chromosome C28108 Processing chromosome C28108 INFO [2014-03-08 06:13:24,699] [Preprocessor.java:241] [main] Processing chromosome C28120 Processing chromosome C28120 INFO [2014-03-08 06:13:24,709] [Preprocessor.java:241] [main] Processing chromosome C28132 Processing chromosome C28132 INFO [2014-03-08 06:13:24,721] [Preprocessor.java:241] [main] Processing chromosome C28144 Processing chromosome C28144 INFO [2014-03-08 06:13:24,743] [Preprocessor.java:241] [main] Processing chromosome C28150 Processing chromosome C28150 INFO [2014-03-08 06:13:24,749] [Preprocessor.java:241] [main] Processing chromosome C28152 Processing chromosome C28152 INFO [2014-03-08 06:13:24,756] [Preprocessor.java:241] [main] Processing chromosome C28168 Processing chromosome C28168 INFO [2014-03-08 06:13:24,769] [Preprocessor.java:241] [main] Processing chromosome C28170 Processing chromosome C28170 INFO [2014-03-08 06:13:24,783] [Preprocessor.java:241] [main] Processing chromosome C28184 Processing chromosome C28184 INFO [2014-03-08 06:13:24,802] [Preprocessor.java:241] [main] Processing chromosome C28190 Processing chromosome C28190 INFO [2014-03-08 06:13:24,836] [Preprocessor.java:241] [main] Processing chromosome C28194 Processing chromosome C28194 INFO [2014-03-08 06:13:24,843] [Preprocessor.java:241] [main] Processing chromosome C28206 Processing chromosome C28206 INFO [2014-03-08 06:13:24,856] [Preprocessor.java:241] [main] Processing chromosome C28216 Processing chromosome C28216 INFO [2014-03-08 06:13:24,869] [Preprocessor.java:241] [main] Processing chromosome C28218 Processing chromosome C28218 INFO [2014-03-08 06:13:24,892] [Preprocessor.java:241] [main] Processing chromosome C28224 Processing chromosome C28224 INFO [2014-03-08 06:13:24,904] [Preprocessor.java:241] [main] Processing chromosome C28230 Processing chromosome C28230 INFO [2014-03-08 06:13:24,926] [Preprocessor.java:241] [main] Processing chromosome C28242 Processing chromosome C28242 INFO [2014-03-08 06:13:24,956] [Preprocessor.java:241] [main] Processing chromosome C28246 Processing chromosome C28246 INFO [2014-03-08 06:13:24,984] [Preprocessor.java:241] [main] Processing chromosome C28254 Processing chromosome C28254 INFO [2014-03-08 06:13:25,020] [Preprocessor.java:241] [main] Processing chromosome C28256 Processing chromosome C28256 INFO [2014-03-08 06:13:25,032] [Preprocessor.java:241] [main] Processing chromosome C28258 Processing chromosome C28258 INFO [2014-03-08 06:13:25,058] [Preprocessor.java:241] [main] Processing chromosome C28260 Processing chromosome C28260 INFO [2014-03-08 06:13:25,094] [Preprocessor.java:241] [main] Processing chromosome C28272 Processing chromosome C28272 INFO [2014-03-08 06:13:25,116] [Preprocessor.java:241] [main] Processing chromosome C28282 Processing chromosome C28282 INFO [2014-03-08 06:13:25,130] [Preprocessor.java:241] [main] Processing chromosome C28286 Processing chromosome C28286 INFO [2014-03-08 06:13:25,147] [Preprocessor.java:241] [main] Processing chromosome C28296 Processing chromosome C28296 INFO [2014-03-08 06:13:25,169] [Preprocessor.java:241] [main] Processing chromosome C28298 Processing chromosome C28298 INFO [2014-03-08 06:13:25,183] [Preprocessor.java:241] [main] Processing chromosome C28306 Processing chromosome C28306 INFO [2014-03-08 06:13:25,212] [Preprocessor.java:241] [main] Processing chromosome C28310 Processing chromosome C28310 INFO [2014-03-08 06:13:25,221] [Preprocessor.java:241] [main] Processing chromosome C28316 Processing chromosome C28316 INFO [2014-03-08 06:13:25,224] [Preprocessor.java:241] [main] Processing chromosome C28328 Processing chromosome C28328 INFO [2014-03-08 06:13:25,232] [Preprocessor.java:241] [main] Processing chromosome C28340 Processing chromosome C28340 INFO [2014-03-08 06:13:25,248] [Preprocessor.java:241] [main] Processing chromosome C28348 Processing chromosome C28348 INFO [2014-03-08 06:13:25,269] [Preprocessor.java:241] [main] Processing chromosome C28350 Processing chromosome C28350 INFO [2014-03-08 06:13:25,279] [Preprocessor.java:241] [main] Processing chromosome C28358 Processing chromosome C28358 INFO [2014-03-08 06:13:25,281] [Preprocessor.java:241] [main] Processing chromosome C28362 Processing chromosome C28362 INFO [2014-03-08 06:13:25,302] [Preprocessor.java:241] [main] Processing chromosome C28364 Processing chromosome C28364 INFO [2014-03-08 06:13:25,312] [Preprocessor.java:241] [main] Processing chromosome C28366 Processing chromosome C28366 INFO [2014-03-08 06:13:25,318] [Preprocessor.java:241] [main] Processing chromosome C28382 Processing chromosome C28382 INFO [2014-03-08 06:13:25,329] [Preprocessor.java:241] [main] Processing chromosome C28398 Processing chromosome C28398 INFO [2014-03-08 06:13:25,378] [Preprocessor.java:241] [main] Processing chromosome C28408 Processing chromosome C28408 INFO [2014-03-08 06:13:25,391] [Preprocessor.java:241] [main] Processing chromosome C28414 Processing chromosome C28414 INFO [2014-03-08 06:13:25,401] [Preprocessor.java:241] [main] Processing chromosome C28420 Processing chromosome C28420 INFO [2014-03-08 06:13:25,408] [Preprocessor.java:241] [main] Processing chromosome C28426 Processing chromosome C28426 INFO [2014-03-08 06:13:25,437] [Preprocessor.java:241] [main] Processing chromosome C28430 Processing chromosome C28430 INFO [2014-03-08 06:13:25,461] [Preprocessor.java:241] [main] Processing chromosome C28432 Processing chromosome C28432 INFO [2014-03-08 06:13:25,471] [Preprocessor.java:241] [main] Processing chromosome C28444 Processing chromosome C28444 INFO [2014-03-08 06:13:25,486] [Preprocessor.java:241] [main] Processing chromosome C28450 Processing chromosome C28450 INFO [2014-03-08 06:13:25,490] [Preprocessor.java:241] [main] Processing chromosome C28454 Processing chromosome C28454 INFO [2014-03-08 06:13:25,519] [Preprocessor.java:241] [main] Processing chromosome C28462 Processing chromosome C28462 INFO [2014-03-08 06:13:25,539] [Preprocessor.java:241] [main] Processing chromosome C28468 Processing chromosome C28468 INFO [2014-03-08 06:13:25,564] [Preprocessor.java:241] [main] Processing chromosome C28470 Processing chromosome C28470 INFO [2014-03-08 06:13:25,569] [Preprocessor.java:241] [main] Processing chromosome C28472 Processing chromosome C28472 INFO [2014-03-08 06:13:25,587] [Preprocessor.java:241] [main] Processing chromosome C28476 Processing chromosome C28476 INFO [2014-03-08 06:13:25,590] [Preprocessor.java:241] [main] Processing chromosome C28486 Processing chromosome C28486 INFO [2014-03-08 06:13:25,595] [Preprocessor.java:241] [main] Processing chromosome C28498 Processing chromosome C28498 INFO [2014-03-08 06:13:25,614] [Preprocessor.java:241] [main] Processing chromosome C28502 Processing chromosome C28502 INFO [2014-03-08 06:13:25,618] [Preprocessor.java:241] [main] Processing chromosome C28506 Processing chromosome C28506 INFO [2014-03-08 06:13:25,631] [Preprocessor.java:241] [main] Processing chromosome C28510 Processing chromosome C28510 INFO [2014-03-08 06:13:25,640] [Preprocessor.java:241] [main] Processing chromosome C28512 Processing chromosome C28512 INFO [2014-03-08 06:13:25,667] [Preprocessor.java:241] [main] Processing chromosome C28514 Processing chromosome C28514 INFO [2014-03-08 06:13:25,702] [Preprocessor.java:241] [main] Processing chromosome C28522 Processing chromosome C28522 INFO [2014-03-08 06:13:25,718] [Preprocessor.java:241] [main] Processing chromosome C28526 Processing chromosome C28526 INFO [2014-03-08 06:13:25,730] [Preprocessor.java:241] [main] Processing chromosome C28534 Processing chromosome C28534 INFO [2014-03-08 06:13:25,759] [Preprocessor.java:241] [main] Processing chromosome C28536 Processing chromosome C28536 INFO [2014-03-08 06:13:25,813] [Preprocessor.java:241] [main] Processing chromosome C28540 Processing chromosome C28540 INFO [2014-03-08 06:13:25,832] [Preprocessor.java:241] [main] Processing chromosome C28542 Processing chromosome C28542 INFO [2014-03-08 06:13:25,835] [Preprocessor.java:241] [main] Processing chromosome C28544 Processing chromosome C28544 INFO [2014-03-08 06:13:25,870] [Preprocessor.java:241] [main] Processing chromosome C28546 Processing chromosome C28546 INFO [2014-03-08 06:13:25,887] [Preprocessor.java:241] [main] Processing chromosome C28550 Processing chromosome C28550 INFO [2014-03-08 06:13:25,895] [Preprocessor.java:241] [main] Processing chromosome C28554 Processing chromosome C28554 INFO [2014-03-08 06:13:25,901] [Preprocessor.java:241] [main] Processing chromosome C28574 Processing chromosome C28574 INFO [2014-03-08 06:13:25,904] [Preprocessor.java:241] [main] Processing chromosome C28582 Processing chromosome C28582 INFO [2014-03-08 06:13:25,910] [Preprocessor.java:241] [main] Processing chromosome C28588 Processing chromosome C28588 INFO [2014-03-08 06:13:25,921] [Preprocessor.java:241] [main] Processing chromosome C28592 Processing chromosome C28592 INFO [2014-03-08 06:13:25,939] [Preprocessor.java:241] [main] Processing chromosome C28594 Processing chromosome C28594 INFO [2014-03-08 06:13:25,958] [Preprocessor.java:241] [main] Processing chromosome C28602 Processing chromosome C28602 INFO [2014-03-08 06:13:25,968] [Preprocessor.java:241] [main] Processing chromosome C28618 Processing chromosome C28618 INFO [2014-03-08 06:13:25,982] [Preprocessor.java:241] [main] Processing chromosome C28622 Processing chromosome C28622 INFO [2014-03-08 06:13:26,012] [Preprocessor.java:241] [main] Processing chromosome C28626 Processing chromosome C28626 INFO [2014-03-08 06:13:26,023] [Preprocessor.java:241] [main] Processing chromosome C28628 Processing chromosome C28628 INFO [2014-03-08 06:13:26,035] [Preprocessor.java:241] [main] Processing chromosome C28632 Processing chromosome C28632 INFO [2014-03-08 06:13:26,048] [Preprocessor.java:241] [main] Processing chromosome C28644 Processing chromosome C28644 INFO [2014-03-08 06:13:26,067] [Preprocessor.java:241] [main] Processing chromosome C28652 Processing chromosome C28652 INFO [2014-03-08 06:13:26,080] [Preprocessor.java:241] [main] Processing chromosome C28654 Processing chromosome C28654 INFO [2014-03-08 06:13:26,089] [Preprocessor.java:241] [main] Processing chromosome C28656 Processing chromosome C28656 INFO [2014-03-08 06:13:26,109] [Preprocessor.java:241] [main] Processing chromosome C28666 Processing chromosome C28666 INFO [2014-03-08 06:13:26,130] [Preprocessor.java:241] [main] Processing chromosome C28678 Processing chromosome C28678 INFO [2014-03-08 06:13:26,158] [Preprocessor.java:241] [main] Processing chromosome C28684 Processing chromosome C28684 INFO [2014-03-08 06:13:26,176] [Preprocessor.java:241] [main] Processing chromosome C28702 Processing chromosome C28702 INFO [2014-03-08 06:13:26,183] [Preprocessor.java:241] [main] Processing chromosome C28704 Processing chromosome C28704 INFO [2014-03-08 06:13:26,195] [Preprocessor.java:241] [main] Processing chromosome C28708 Processing chromosome C28708 INFO [2014-03-08 06:13:26,238] [Preprocessor.java:241] [main] Processing chromosome C28716 Processing chromosome C28716 INFO [2014-03-08 06:13:26,252] [Preprocessor.java:241] [main] Processing chromosome C28718 Processing chromosome C28718 INFO [2014-03-08 06:13:26,263] [Preprocessor.java:241] [main] Processing chromosome C28722 Processing chromosome C28722 INFO [2014-03-08 06:13:26,282] [Preprocessor.java:241] [main] Processing chromosome C28726 Processing chromosome C28726 INFO [2014-03-08 06:13:26,291] [Preprocessor.java:241] [main] Processing chromosome C28728 Processing chromosome C28728 INFO [2014-03-08 06:13:26,297] [Preprocessor.java:241] [main] Processing chromosome C28732 Processing chromosome C28732 INFO [2014-03-08 06:13:26,313] [Preprocessor.java:241] [main] Processing chromosome C28734 Processing chromosome C28734 INFO [2014-03-08 06:13:26,319] [Preprocessor.java:241] [main] Processing chromosome C28736 Processing chromosome C28736 INFO [2014-03-08 06:13:26,351] [Preprocessor.java:241] [main] Processing chromosome C28748 Processing chromosome C28748 INFO [2014-03-08 06:13:26,355] [Preprocessor.java:241] [main] Processing chromosome C28752 Processing chromosome C28752 INFO [2014-03-08 06:13:26,370] [Preprocessor.java:241] [main] Processing chromosome C28760 Processing chromosome C28760 INFO [2014-03-08 06:13:26,400] [Preprocessor.java:241] [main] Processing chromosome C28766 Processing chromosome C28766 INFO [2014-03-08 06:13:26,427] [Preprocessor.java:241] [main] Processing chromosome C2877 Processing chromosome C2877 INFO [2014-03-08 06:13:26,458] [Preprocessor.java:241] [main] Processing chromosome C28772 Processing chromosome C28772 INFO [2014-03-08 06:13:26,494] [Preprocessor.java:241] [main] Processing chromosome C28784 Processing chromosome C28784 INFO [2014-03-08 06:13:26,496] [Preprocessor.java:241] [main] Processing chromosome C28800 Processing chromosome C28800 INFO [2014-03-08 06:13:26,512] [Preprocessor.java:241] [main] Processing chromosome C28802 Processing chromosome C28802 INFO [2014-03-08 06:13:26,531] [Preprocessor.java:241] [main] Processing chromosome C28806 Processing chromosome C28806 INFO [2014-03-08 06:13:26,549] [Preprocessor.java:241] [main] Processing chromosome C28808 Processing chromosome C28808 INFO [2014-03-08 06:13:26,555] [Preprocessor.java:241] [main] Processing chromosome C28816 Processing chromosome C28816 INFO [2014-03-08 06:13:26,575] [Preprocessor.java:241] [main] Processing chromosome C28830 Processing chromosome C28830 INFO [2014-03-08 06:13:26,583] [Preprocessor.java:241] [main] Processing chromosome C28836 Processing chromosome C28836 INFO [2014-03-08 06:13:26,598] [Preprocessor.java:241] [main] Processing chromosome C28838 Processing chromosome C28838 INFO [2014-03-08 06:13:26,616] [Preprocessor.java:241] [main] Processing chromosome C28840 Processing chromosome C28840 INFO [2014-03-08 06:13:26,629] [Preprocessor.java:241] [main] Processing chromosome C28846 Processing chromosome C28846 INFO [2014-03-08 06:13:26,647] [Preprocessor.java:241] [main] Processing chromosome C28850 Processing chromosome C28850 INFO [2014-03-08 06:13:26,664] [Preprocessor.java:241] [main] Processing chromosome C28852 Processing chromosome C28852 INFO [2014-03-08 06:13:26,677] [Preprocessor.java:241] [main] Processing chromosome C28858 Processing chromosome C28858 INFO [2014-03-08 06:13:26,683] [Preprocessor.java:241] [main] Processing chromosome C28864 Processing chromosome C28864 INFO [2014-03-08 06:13:26,693] [Preprocessor.java:241] [main] Processing chromosome C28876 Processing chromosome C28876 INFO [2014-03-08 06:13:26,702] [Preprocessor.java:241] [main] Processing chromosome C28884 Processing chromosome C28884 INFO [2014-03-08 06:13:26,707] [Preprocessor.java:241] [main] Processing chromosome C28898 Processing chromosome C28898 INFO [2014-03-08 06:13:26,717] [Preprocessor.java:241] [main] Processing chromosome C28902 Processing chromosome C28902 INFO [2014-03-08 06:13:26,725] [Preprocessor.java:241] [main] Processing chromosome C28906 Processing chromosome C28906 INFO [2014-03-08 06:13:26,733] [Preprocessor.java:241] [main] Processing chromosome C28910 Processing chromosome C28910 INFO [2014-03-08 06:13:26,746] [Preprocessor.java:241] [main] Processing chromosome C28916 Processing chromosome C28916 INFO [2014-03-08 06:13:26,753] [Preprocessor.java:241] [main] Processing chromosome C28934 Processing chromosome C28934 INFO [2014-03-08 06:13:26,761] [Preprocessor.java:241] [main] Processing chromosome C28952 Processing chromosome C28952 INFO [2014-03-08 06:13:26,778] [Preprocessor.java:241] [main] Processing chromosome C28958 Processing chromosome C28958 INFO [2014-03-08 06:13:26,782] [Preprocessor.java:241] [main] Processing chromosome C28974 Processing chromosome C28974 INFO [2014-03-08 06:13:26,812] [Preprocessor.java:241] [main] Processing chromosome C28982 Processing chromosome C28982 INFO [2014-03-08 06:13:26,832] [Preprocessor.java:241] [main] Processing chromosome C28990 Processing chromosome C28990 INFO [2014-03-08 06:13:26,856] [Preprocessor.java:241] [main] Processing chromosome C28992 Processing chromosome C28992 INFO [2014-03-08 06:13:26,887] [Preprocessor.java:241] [main] Processing chromosome C28996 Processing chromosome C28996 INFO [2014-03-08 06:13:26,905] [Preprocessor.java:241] [main] Processing chromosome C28998 Processing chromosome C28998 INFO [2014-03-08 06:13:26,930] [Preprocessor.java:241] [main] Processing chromosome C29006 Processing chromosome C29006 INFO [2014-03-08 06:13:26,936] [Preprocessor.java:241] [main] Processing chromosome C29008 Processing chromosome C29008 INFO [2014-03-08 06:13:26,952] [Preprocessor.java:241] [main] Processing chromosome C29010 Processing chromosome C29010 INFO [2014-03-08 06:13:26,966] [Preprocessor.java:241] [main] Processing chromosome C29022 Processing chromosome C29022 INFO [2014-03-08 06:13:26,971] [Preprocessor.java:241] [main] Processing chromosome C29030 Processing chromosome C29030 INFO [2014-03-08 06:13:26,975] [Preprocessor.java:241] [main] Processing chromosome C29038 Processing chromosome C29038 INFO [2014-03-08 06:13:26,981] [Preprocessor.java:241] [main] Processing chromosome C29044 Processing chromosome C29044 INFO [2014-03-08 06:13:26,985] [Preprocessor.java:241] [main] Processing chromosome C29048 Processing chromosome C29048 INFO [2014-03-08 06:13:27,008] [Preprocessor.java:241] [main] Processing chromosome C29050 Processing chromosome C29050 INFO [2014-03-08 06:13:27,019] [Preprocessor.java:241] [main] Processing chromosome C29052 Processing chromosome C29052 INFO [2014-03-08 06:13:27,040] [Preprocessor.java:241] [main] Processing chromosome C29066 Processing chromosome C29066 INFO [2014-03-08 06:13:27,053] [Preprocessor.java:241] [main] Processing chromosome C29070 Processing chromosome C29070 INFO [2014-03-08 06:13:27,071] [Preprocessor.java:241] [main] Processing chromosome C29072 Processing chromosome C29072 INFO [2014-03-08 06:13:27,074] [Preprocessor.java:241] [main] Processing chromosome C29084 Processing chromosome C29084 INFO [2014-03-08 06:13:27,078] [Preprocessor.java:241] [main] Processing chromosome C29100 Processing chromosome C29100 INFO [2014-03-08 06:13:27,099] [Preprocessor.java:241] [main] Processing chromosome C29106 Processing chromosome C29106 INFO [2014-03-08 06:13:27,102] [Preprocessor.java:241] [main] Processing chromosome C29108 Processing chromosome C29108 INFO [2014-03-08 06:13:27,104] [Preprocessor.java:241] [main] Processing chromosome C29110 Processing chromosome C29110 INFO [2014-03-08 06:13:27,116] [Preprocessor.java:241] [main] Processing chromosome C29112 Processing chromosome C29112 INFO [2014-03-08 06:13:27,131] [Preprocessor.java:241] [main] Processing chromosome C29114 Processing chromosome C29114 INFO [2014-03-08 06:13:27,141] [Preprocessor.java:241] [main] Processing chromosome C29122 Processing chromosome C29122 INFO [2014-03-08 06:13:27,144] [Preprocessor.java:241] [main] Processing chromosome C29132 Processing chromosome C29132 INFO [2014-03-08 06:13:27,158] [Preprocessor.java:241] [main] Processing chromosome C29134 Processing chromosome C29134 INFO [2014-03-08 06:13:27,173] [Preprocessor.java:241] [main] Processing chromosome C29144 Processing chromosome C29144 INFO [2014-03-08 06:13:27,195] [Preprocessor.java:241] [main] Processing chromosome C29154 Processing chromosome C29154 INFO [2014-03-08 06:13:27,197] [Preprocessor.java:241] [main] Processing chromosome C29164 Processing chromosome C29164 INFO [2014-03-08 06:13:27,217] [Preprocessor.java:241] [main] Processing chromosome C29168 Processing chromosome C29168 INFO [2014-03-08 06:13:27,253] [Preprocessor.java:241] [main] Processing chromosome C29170 Processing chromosome C29170 INFO [2014-03-08 06:13:27,257] [Preprocessor.java:241] [main] Processing chromosome C29178 Processing chromosome C29178 INFO [2014-03-08 06:13:27,271] [Preprocessor.java:241] [main] Processing chromosome C29184 Processing chromosome C29184 INFO [2014-03-08 06:13:27,278] [Preprocessor.java:241] [main] Processing chromosome C29186 Processing chromosome C29186 INFO [2014-03-08 06:13:27,313] [Preprocessor.java:241] [main] Processing chromosome C29188 Processing chromosome C29188 INFO [2014-03-08 06:13:27,331] [Preprocessor.java:241] [main] Processing chromosome C29192 Processing chromosome C29192 INFO [2014-03-08 06:13:27,338] [Preprocessor.java:241] [main] Processing chromosome C29194 Processing chromosome C29194 INFO [2014-03-08 06:13:27,345] [Preprocessor.java:241] [main] Processing chromosome C29202 Processing chromosome C29202 INFO [2014-03-08 06:13:27,347] [Preprocessor.java:241] [main] Processing chromosome C29208 Processing chromosome C29208 INFO [2014-03-08 06:13:27,366] [Preprocessor.java:241] [main] Processing chromosome C29214 Processing chromosome C29214 INFO [2014-03-08 06:13:27,369] [Preprocessor.java:241] [main] Processing chromosome C29222 Processing chromosome C29222 INFO [2014-03-08 06:13:27,381] [Preprocessor.java:241] [main] Processing chromosome C29224 Processing chromosome C29224 INFO [2014-03-08 06:13:27,385] [Preprocessor.java:241] [main] Processing chromosome C29238 Processing chromosome C29238 INFO [2014-03-08 06:13:27,390] [Preprocessor.java:241] [main] Processing chromosome C29242 Processing chromosome C29242 INFO [2014-03-08 06:13:27,403] [Preprocessor.java:241] [main] Processing chromosome C29244 Processing chromosome C29244 INFO [2014-03-08 06:13:27,423] [Preprocessor.java:241] [main] Processing chromosome C29246 Processing chromosome C29246 INFO [2014-03-08 06:13:27,433] [Preprocessor.java:241] [main] Processing chromosome C29248 Processing chromosome C29248 INFO [2014-03-08 06:13:27,443] [Preprocessor.java:241] [main] Processing chromosome C29254 Processing chromosome C29254 INFO [2014-03-08 06:13:27,460] [Preprocessor.java:241] [main] Processing chromosome C29258 Processing chromosome C29258 INFO [2014-03-08 06:13:27,478] [Preprocessor.java:241] [main] Processing chromosome C29260 Processing chromosome C29260 INFO [2014-03-08 06:13:27,488] [Preprocessor.java:241] [main] Processing chromosome C29272 Processing chromosome C29272 INFO [2014-03-08 06:13:27,490] [Preprocessor.java:241] [main] Processing chromosome C29274 Processing chromosome C29274 INFO [2014-03-08 06:13:27,507] [Preprocessor.java:241] [main] Processing chromosome C29280 Processing chromosome C29280 INFO [2014-03-08 06:13:27,529] [Preprocessor.java:241] [main] Processing chromosome C29290 Processing chromosome C29290 INFO [2014-03-08 06:13:27,531] [Preprocessor.java:241] [main] Processing chromosome C29294 Processing chromosome C29294 INFO [2014-03-08 06:13:27,560] [Preprocessor.java:241] [main] Processing chromosome C29298 Processing chromosome C29298 INFO [2014-03-08 06:13:27,584] [Preprocessor.java:241] [main] Processing chromosome C29300 Processing chromosome C29300 INFO [2014-03-08 06:13:27,601] [Preprocessor.java:241] [main] Processing chromosome C29308 Processing chromosome C29308 INFO [2014-03-08 06:13:27,608] [Preprocessor.java:241] [main] Processing chromosome C2931 Processing chromosome C2931 INFO [2014-03-08 06:13:27,665] [Preprocessor.java:241] [main] Processing chromosome C29320 Processing chromosome C29320 INFO [2014-03-08 06:13:27,687] [Preprocessor.java:241] [main] Processing chromosome C29322 Processing chromosome C29322 INFO [2014-03-08 06:13:27,702] [Preprocessor.java:241] [main] Processing chromosome C29340 Processing chromosome C29340 INFO [2014-03-08 06:13:27,708] [Preprocessor.java:241] [main] Processing chromosome C29344 Processing chromosome C29344 INFO [2014-03-08 06:13:27,716] [Preprocessor.java:241] [main] Processing chromosome C29346 Processing chromosome C29346 INFO [2014-03-08 06:13:27,738] [Preprocessor.java:241] [main] Processing chromosome C29348 Processing chromosome C29348 INFO [2014-03-08 06:13:27,744] [Preprocessor.java:241] [main] Processing chromosome C29354 Processing chromosome C29354 INFO [2014-03-08 06:13:27,751] [Preprocessor.java:241] [main] Processing chromosome C29356 Processing chromosome C29356 INFO [2014-03-08 06:13:27,764] [Preprocessor.java:241] [main] Processing chromosome C29362 Processing chromosome C29362 INFO [2014-03-08 06:13:27,776] [Preprocessor.java:241] [main] Processing chromosome C29364 Processing chromosome C29364 INFO [2014-03-08 06:13:27,787] [Preprocessor.java:241] [main] Processing chromosome C29368 Processing chromosome C29368 INFO [2014-03-08 06:13:27,819] [Preprocessor.java:241] [main] Processing chromosome C29380 Processing chromosome C29380 INFO [2014-03-08 06:13:27,831] [Preprocessor.java:241] [main] Processing chromosome C29388 Processing chromosome C29388 INFO [2014-03-08 06:13:27,851] [Preprocessor.java:241] [main] Processing chromosome C29394 Processing chromosome C29394 INFO [2014-03-08 06:13:27,873] [Preprocessor.java:241] [main] Processing chromosome C29398 Processing chromosome C29398 INFO [2014-03-08 06:13:27,886] [Preprocessor.java:241] [main] Processing chromosome C29400 Processing chromosome C29400 INFO [2014-03-08 06:13:27,895] [Preprocessor.java:241] [main] Processing chromosome C29408 Processing chromosome C29408 INFO [2014-03-08 06:13:27,901] [Preprocessor.java:241] [main] Processing chromosome C29410 Processing chromosome C29410 INFO [2014-03-08 06:13:27,928] [Preprocessor.java:241] [main] Processing chromosome C29414 Processing chromosome C29414 INFO [2014-03-08 06:13:27,937] [Preprocessor.java:241] [main] Processing chromosome C29416 Processing chromosome C29416 INFO [2014-03-08 06:13:27,941] [Preprocessor.java:241] [main] Processing chromosome C29424 Processing chromosome C29424 INFO [2014-03-08 06:13:27,954] [Preprocessor.java:241] [main] Processing chromosome C29428 Processing chromosome C29428 INFO [2014-03-08 06:13:27,968] [Preprocessor.java:241] [main] Processing chromosome C29432 Processing chromosome C29432 INFO [2014-03-08 06:13:28,017] [Preprocessor.java:241] [main] Processing chromosome C29438 Processing chromosome C29438 INFO [2014-03-08 06:13:28,025] [Preprocessor.java:241] [main] Processing chromosome C29444 Processing chromosome C29444 INFO [2014-03-08 06:13:28,051] [Preprocessor.java:241] [main] Processing chromosome C29446 Processing chromosome C29446 INFO [2014-03-08 06:13:28,069] [Preprocessor.java:241] [main] Processing chromosome C29450 Processing chromosome C29450 INFO [2014-03-08 06:13:28,088] [Preprocessor.java:241] [main] Processing chromosome C29458 Processing chromosome C29458 INFO [2014-03-08 06:13:28,109] [Preprocessor.java:241] [main] Processing chromosome C29472 Processing chromosome C29472 INFO [2014-03-08 06:13:28,115] [Preprocessor.java:241] [main] Processing chromosome C29474 Processing chromosome C29474 INFO [2014-03-08 06:13:28,141] [Preprocessor.java:241] [main] Processing chromosome C29494 Processing chromosome C29494 INFO [2014-03-08 06:13:28,152] [Preprocessor.java:241] [main] Processing chromosome C29498 Processing chromosome C29498 INFO [2014-03-08 06:13:28,158] [Preprocessor.java:241] [main] Processing chromosome C29506 Processing chromosome C29506 INFO [2014-03-08 06:13:28,168] [Preprocessor.java:241] [main] Processing chromosome C29510 Processing chromosome C29510 INFO [2014-03-08 06:13:28,174] [Preprocessor.java:241] [main] Processing chromosome C29516 Processing chromosome C29516 INFO [2014-03-08 06:13:28,176] [Preprocessor.java:241] [main] Processing chromosome C29518 Processing chromosome C29518 INFO [2014-03-08 06:13:28,185] [Preprocessor.java:241] [main] Processing chromosome C29524 Processing chromosome C29524 INFO [2014-03-08 06:13:28,188] [Preprocessor.java:241] [main] Processing chromosome C29526 Processing chromosome C29526 INFO [2014-03-08 06:13:28,200] [Preprocessor.java:241] [main] Processing chromosome C29530 Processing chromosome C29530 INFO [2014-03-08 06:13:28,216] [Preprocessor.java:241] [main] Processing chromosome C29538 Processing chromosome C29538 INFO [2014-03-08 06:13:28,239] [Preprocessor.java:241] [main] Processing chromosome C29540 Processing chromosome C29540 INFO [2014-03-08 06:13:28,255] [Preprocessor.java:241] [main] Processing chromosome C29542 Processing chromosome C29542 INFO [2014-03-08 06:13:28,257] [Preprocessor.java:241] [main] Processing chromosome C29544 Processing chromosome C29544 INFO [2014-03-08 06:13:28,262] [Preprocessor.java:241] [main] Processing chromosome C29548 Processing chromosome C29548 INFO [2014-03-08 06:13:28,270] [Preprocessor.java:241] [main] Processing chromosome C29554 Processing chromosome C29554 INFO [2014-03-08 06:13:28,288] [Preprocessor.java:241] [main] Processing chromosome C29558 Processing chromosome C29558 INFO [2014-03-08 06:13:28,293] [Preprocessor.java:241] [main] Processing chromosome C29566 Processing chromosome C29566 INFO [2014-03-08 06:13:28,296] [Preprocessor.java:241] [main] Processing chromosome C29572 Processing chromosome C29572 INFO [2014-03-08 06:13:28,304] [Preprocessor.java:241] [main] Processing chromosome C29576 Processing chromosome C29576 INFO [2014-03-08 06:13:28,322] [Preprocessor.java:241] [main] Processing chromosome C29582 Processing chromosome C29582 INFO [2014-03-08 06:13:28,327] [Preprocessor.java:241] [main] Processing chromosome C29584 Processing chromosome C29584 INFO [2014-03-08 06:13:28,359] [Preprocessor.java:241] [main] Processing chromosome C29612 Processing chromosome C29612 INFO [2014-03-08 06:13:28,372] [Preprocessor.java:241] [main] Processing chromosome C29614 Processing chromosome C29614 INFO [2014-03-08 06:13:28,389] [Preprocessor.java:241] [main] Processing chromosome C29618 Processing chromosome C29618 INFO [2014-03-08 06:13:28,402] [Preprocessor.java:241] [main] Processing chromosome C29620 Processing chromosome C29620 INFO [2014-03-08 06:13:28,418] [Preprocessor.java:241] [main] Processing chromosome C29624 Processing chromosome C29624 INFO [2014-03-08 06:13:28,435] [Preprocessor.java:241] [main] Processing chromosome C29632 Processing chromosome C29632 INFO [2014-03-08 06:13:28,446] [Preprocessor.java:241] [main] Processing chromosome C29634 Processing chromosome C29634 INFO [2014-03-08 06:13:28,474] [Preprocessor.java:241] [main] Processing chromosome C29638 Processing chromosome C29638 INFO [2014-03-08 06:13:28,490] [Preprocessor.java:241] [main] Processing chromosome C29642 Processing chromosome C29642 INFO [2014-03-08 06:13:28,502] [Preprocessor.java:241] [main] Processing chromosome C29644 Processing chromosome C29644 INFO [2014-03-08 06:13:28,519] [Preprocessor.java:241] [main] Processing chromosome C29662 Processing chromosome C29662 INFO [2014-03-08 06:13:28,570] [Preprocessor.java:241] [main] Processing chromosome C29664 Processing chromosome C29664 INFO [2014-03-08 06:13:28,573] [Preprocessor.java:241] [main] Processing chromosome C2967 Processing chromosome C2967 INFO [2014-03-08 06:13:28,636] [Preprocessor.java:241] [main] Processing chromosome C29670 Processing chromosome C29670 INFO [2014-03-08 06:13:28,642] [Preprocessor.java:241] [main] Processing chromosome C29678 Processing chromosome C29678 INFO [2014-03-08 06:13:28,650] [Preprocessor.java:241] [main] Processing chromosome C29680 Processing chromosome C29680 INFO [2014-03-08 06:13:28,652] [Preprocessor.java:241] [main] Processing chromosome C29682 Processing chromosome C29682 INFO [2014-03-08 06:13:28,660] [Preprocessor.java:241] [main] Processing chromosome C29704 Processing chromosome C29704 INFO [2014-03-08 06:13:28,669] [Preprocessor.java:241] [main] Processing chromosome C29722 Processing chromosome C29722 INFO [2014-03-08 06:13:28,698] [Preprocessor.java:241] [main] Processing chromosome C29724 Processing chromosome C29724 INFO [2014-03-08 06:13:28,701] [Preprocessor.java:241] [main] Processing chromosome C29730 Processing chromosome C29730 INFO [2014-03-08 06:13:28,707] [Preprocessor.java:241] [main] Processing chromosome C29734 Processing chromosome C29734 INFO [2014-03-08 06:13:28,719] [Preprocessor.java:241] [main] Processing chromosome C29736 Processing chromosome C29736 INFO [2014-03-08 06:13:28,725] [Preprocessor.java:241] [main] Processing chromosome C29750 Processing chromosome C29750 INFO [2014-03-08 06:13:28,749] [Preprocessor.java:241] [main] Processing chromosome C29758 Processing chromosome C29758 INFO [2014-03-08 06:13:28,779] [Preprocessor.java:241] [main] Processing chromosome C29764 Processing chromosome C29764 INFO [2014-03-08 06:13:28,794] [Preprocessor.java:241] [main] Processing chromosome C29766 Processing chromosome C29766 INFO [2014-03-08 06:13:28,812] [Preprocessor.java:241] [main] Processing chromosome C29768 Processing chromosome C29768 INFO [2014-03-08 06:13:28,819] [Preprocessor.java:241] [main] Processing chromosome C29774 Processing chromosome C29774 INFO [2014-03-08 06:13:28,835] [Preprocessor.java:241] [main] Processing chromosome C29784 Processing chromosome C29784 INFO [2014-03-08 06:13:28,854] [Preprocessor.java:241] [main] Processing chromosome C29786 Processing chromosome C29786 INFO [2014-03-08 06:13:28,860] [Preprocessor.java:241] [main] Processing chromosome C29788 Processing chromosome C29788 INFO [2014-03-08 06:13:28,876] [Preprocessor.java:241] [main] Processing chromosome C29798 Processing chromosome C29798 INFO [2014-03-08 06:13:28,912] [Preprocessor.java:241] [main] Processing chromosome C29820 Processing chromosome C29820 INFO [2014-03-08 06:13:28,918] [Preprocessor.java:241] [main] Processing chromosome C29848 Processing chromosome C29848 INFO [2014-03-08 06:13:28,929] [Preprocessor.java:241] [main] Processing chromosome C29854 Processing chromosome C29854 INFO [2014-03-08 06:13:28,932] [Preprocessor.java:241] [main] Processing chromosome C29876 Processing chromosome C29876 INFO [2014-03-08 06:13:28,946] [Preprocessor.java:241] [main] Processing chromosome C29878 Processing chromosome C29878 INFO [2014-03-08 06:13:28,978] [Preprocessor.java:241] [main] Processing chromosome C29882 Processing chromosome C29882 INFO [2014-03-08 06:13:28,994] [Preprocessor.java:241] [main] Processing chromosome C29898 Processing chromosome C29898 INFO [2014-03-08 06:13:29,009] [Preprocessor.java:241] [main] Processing chromosome C29902 Processing chromosome C29902 INFO [2014-03-08 06:13:29,035] [Preprocessor.java:241] [main] Processing chromosome C29904 Processing chromosome C29904 INFO [2014-03-08 06:13:29,049] [Preprocessor.java:241] [main] Processing chromosome C29908 Processing chromosome C29908 INFO [2014-03-08 06:13:29,057] [Preprocessor.java:241] [main] Processing chromosome C29914 Processing chromosome C29914 INFO [2014-03-08 06:13:29,063] [Preprocessor.java:241] [main] Processing chromosome C29928 Processing chromosome C29928 INFO [2014-03-08 06:13:29,070] [Preprocessor.java:241] [main] Processing chromosome C29936 Processing chromosome C29936 INFO [2014-03-08 06:13:29,084] [Preprocessor.java:241] [main] Processing chromosome C29942 Processing chromosome C29942 INFO [2014-03-08 06:13:29,120] [Preprocessor.java:241] [main] Processing chromosome C29946 Processing chromosome C29946 INFO [2014-03-08 06:13:29,134] [Preprocessor.java:241] [main] Processing chromosome C29950 Processing chromosome C29950 INFO [2014-03-08 06:13:29,140] [Preprocessor.java:241] [main] Processing chromosome C29954 Processing chromosome C29954 INFO [2014-03-08 06:13:29,155] [Preprocessor.java:241] [main] Processing chromosome C29956 Processing chromosome C29956 INFO [2014-03-08 06:13:29,195] [Preprocessor.java:241] [main] Processing chromosome C29958 Processing chromosome C29958 INFO [2014-03-08 06:13:29,219] [Preprocessor.java:241] [main] Processing chromosome C29960 Processing chromosome C29960 INFO [2014-03-08 06:13:29,255] [Preprocessor.java:241] [main] Processing chromosome C29966 Processing chromosome C29966 INFO [2014-03-08 06:13:29,264] [Preprocessor.java:241] [main] Processing chromosome C29968 Processing chromosome C29968 INFO [2014-03-08 06:13:29,282] [Preprocessor.java:241] [main] Processing chromosome C29970 Processing chromosome C29970 INFO [2014-03-08 06:13:29,293] [Preprocessor.java:241] [main] Processing chromosome C29974 Processing chromosome C29974 INFO [2014-03-08 06:13:29,303] [Preprocessor.java:241] [main] Processing chromosome C29976 Processing chromosome C29976 INFO [2014-03-08 06:13:29,312] [Preprocessor.java:241] [main] Processing chromosome C29980 Processing chromosome C29980 INFO [2014-03-08 06:13:29,321] [Preprocessor.java:241] [main] Processing chromosome C29986 Processing chromosome C29986 INFO [2014-03-08 06:13:29,349] [Preprocessor.java:241] [main] Processing chromosome C29988 Processing chromosome C29988 INFO [2014-03-08 06:13:29,360] [Preprocessor.java:241] [main] Processing chromosome C29992 Processing chromosome C29992 INFO [2014-03-08 06:13:29,365] [Preprocessor.java:241] [main] Processing chromosome C29994 Processing chromosome C29994 INFO [2014-03-08 06:13:29,378] [Preprocessor.java:241] [main] Processing chromosome C30002 Processing chromosome C30002 INFO [2014-03-08 06:13:29,390] [Preprocessor.java:241] [main] Processing chromosome C30012 Processing chromosome C30012 INFO [2014-03-08 06:13:29,397] [Preprocessor.java:241] [main] Processing chromosome C30022 Processing chromosome C30022 INFO [2014-03-08 06:13:29,404] [Preprocessor.java:241] [main] Processing chromosome C30038 Processing chromosome C30038 INFO [2014-03-08 06:13:29,416] [Preprocessor.java:241] [main] Processing chromosome C30040 Processing chromosome C30040 INFO [2014-03-08 06:13:29,441] [Preprocessor.java:241] [main] Processing chromosome C30042 Processing chromosome C30042 INFO [2014-03-08 06:13:29,448] [Preprocessor.java:241] [main] Processing chromosome C30044 Processing chromosome C30044 INFO [2014-03-08 06:13:29,472] [Preprocessor.java:241] [main] Processing chromosome C30046 Processing chromosome C30046 INFO [2014-03-08 06:13:29,510] [Preprocessor.java:241] [main] Processing chromosome C30058 Processing chromosome C30058 INFO [2014-03-08 06:13:29,515] [Preprocessor.java:241] [main] Processing chromosome C30060 Processing chromosome C30060 INFO [2014-03-08 06:13:29,526] [Preprocessor.java:241] [main] Processing chromosome C30072 Processing chromosome C30072 INFO [2014-03-08 06:13:29,535] [Preprocessor.java:241] [main] Processing chromosome C30084 Processing chromosome C30084 INFO [2014-03-08 06:13:29,548] [Preprocessor.java:241] [main] Processing chromosome C30100 Processing chromosome C30100 INFO [2014-03-08 06:13:29,556] [Preprocessor.java:241] [main] Processing chromosome C30110 Processing chromosome C30110 INFO [2014-03-08 06:13:29,563] [Preprocessor.java:241] [main] Processing chromosome C30118 Processing chromosome C30118 INFO [2014-03-08 06:13:29,576] [Preprocessor.java:241] [main] Processing chromosome C30120 Processing chromosome C30120 INFO [2014-03-08 06:13:29,582] [Preprocessor.java:241] [main] Processing chromosome C30124 Processing chromosome C30124 INFO [2014-03-08 06:13:29,622] [Preprocessor.java:241] [main] Processing chromosome C30126 Processing chromosome C30126 INFO [2014-03-08 06:13:29,647] [Preprocessor.java:241] [main] Processing chromosome C30130 Processing chromosome C30130 INFO [2014-03-08 06:13:29,657] [Preprocessor.java:241] [main] Processing chromosome C30140 Processing chromosome C30140 INFO [2014-03-08 06:13:29,662] [Preprocessor.java:241] [main] Processing chromosome C30144 Processing chromosome C30144 INFO [2014-03-08 06:13:29,677] [Preprocessor.java:241] [main] Processing chromosome C30162 Processing chromosome C30162 INFO [2014-03-08 06:13:29,688] [Preprocessor.java:241] [main] Processing chromosome C30166 Processing chromosome C30166 INFO [2014-03-08 06:13:29,709] [Preprocessor.java:241] [main] Processing chromosome C30176 Processing chromosome C30176 INFO [2014-03-08 06:13:29,713] [Preprocessor.java:241] [main] Processing chromosome C30178 Processing chromosome C30178 INFO [2014-03-08 06:13:29,725] [Preprocessor.java:241] [main] Processing chromosome C30186 Processing chromosome C30186 INFO [2014-03-08 06:13:29,750] [Preprocessor.java:241] [main] Processing chromosome C30188 Processing chromosome C30188 INFO [2014-03-08 06:13:29,767] [Preprocessor.java:241] [main] Processing chromosome C30206 Processing chromosome C30206 INFO [2014-03-08 06:13:29,802] [Preprocessor.java:241] [main] Processing chromosome C30216 Processing chromosome C30216 INFO [2014-03-08 06:13:29,841] [Preprocessor.java:241] [main] Processing chromosome C30224 Processing chromosome C30224 INFO [2014-03-08 06:13:29,851] [Preprocessor.java:241] [main] Processing chromosome C30226 Processing chromosome C30226 INFO [2014-03-08 06:13:29,868] [Preprocessor.java:241] [main] Processing chromosome C30232 Processing chromosome C30232 INFO [2014-03-08 06:13:29,873] [Preprocessor.java:241] [main] Processing chromosome C30238 Processing chromosome C30238 INFO [2014-03-08 06:13:29,898] [Preprocessor.java:241] [main] Processing chromosome C30240 Processing chromosome C30240 INFO [2014-03-08 06:13:29,918] [Preprocessor.java:241] [main] Processing chromosome C30252 Processing chromosome C30252 INFO [2014-03-08 06:13:29,941] [Preprocessor.java:241] [main] Processing chromosome C30258 Processing chromosome C30258 INFO [2014-03-08 06:13:29,955] [Preprocessor.java:241] [main] Processing chromosome C30260 Processing chromosome C30260 INFO [2014-03-08 06:13:29,964] [Preprocessor.java:241] [main] Processing chromosome C30262 Processing chromosome C30262 INFO [2014-03-08 06:13:29,998] [Preprocessor.java:241] [main] Processing chromosome C30282 Processing chromosome C30282 INFO [2014-03-08 06:13:30,021] [Preprocessor.java:241] [main] Processing chromosome C30292 Processing chromosome C30292 INFO [2014-03-08 06:13:30,035] [Preprocessor.java:241] [main] Processing chromosome C30294 Processing chromosome C30294 INFO [2014-03-08 06:13:30,061] [Preprocessor.java:241] [main] Processing chromosome C30296 Processing chromosome C30296 INFO [2014-03-08 06:13:30,096] [Preprocessor.java:241] [main] Processing chromosome C30300 Processing chromosome C30300 INFO [2014-03-08 06:13:30,119] [Preprocessor.java:241] [main] Processing chromosome C30322 Processing chromosome C30322 INFO [2014-03-08 06:13:30,152] [Preprocessor.java:241] [main] Processing chromosome C30324 Processing chromosome C30324 INFO [2014-03-08 06:13:30,163] [Preprocessor.java:241] [main] Processing chromosome C30332 Processing chromosome C30332 INFO [2014-03-08 06:13:30,176] [Preprocessor.java:241] [main] Processing chromosome C30336 Processing chromosome C30336 INFO [2014-03-08 06:13:30,189] [Preprocessor.java:241] [main] Processing chromosome C30340 Processing chromosome C30340 INFO [2014-03-08 06:13:30,236] [Preprocessor.java:241] [main] Processing chromosome C30344 Processing chromosome C30344 INFO [2014-03-08 06:13:30,242] [Preprocessor.java:241] [main] Processing chromosome C30354 Processing chromosome C30354 INFO [2014-03-08 06:13:30,245] [Preprocessor.java:241] [main] Processing chromosome C30356 Processing chromosome C30356 INFO [2014-03-08 06:13:30,270] [Preprocessor.java:241] [main] Processing chromosome C30362 Processing chromosome C30362 INFO [2014-03-08 06:13:30,291] [Preprocessor.java:241] [main] Processing chromosome C30398 Processing chromosome C30398 INFO [2014-03-08 06:13:30,296] [Preprocessor.java:241] [main] Processing chromosome C30414 Processing chromosome C30414 INFO [2014-03-08 06:13:30,320] [Preprocessor.java:241] [main] Processing chromosome C30426 Processing chromosome C30426 INFO [2014-03-08 06:13:30,348] [Preprocessor.java:241] [main] Processing chromosome C30430 Processing chromosome C30430 INFO [2014-03-08 06:13:30,361] [Preprocessor.java:241] [main] Processing chromosome C30434 Processing chromosome C30434 INFO [2014-03-08 06:13:30,383] [Preprocessor.java:241] [main] Processing chromosome C30444 Processing chromosome C30444 INFO [2014-03-08 06:13:30,393] [Preprocessor.java:241] [main] Processing chromosome C30458 Processing chromosome C30458 INFO [2014-03-08 06:13:30,407] [Preprocessor.java:241] [main] Processing chromosome C30460 Processing chromosome C30460 INFO [2014-03-08 06:13:30,427] [Preprocessor.java:241] [main] Processing chromosome C30472 Processing chromosome C30472 INFO [2014-03-08 06:13:30,444] [Preprocessor.java:241] [main] Processing chromosome C30476 Processing chromosome C30476 INFO [2014-03-08 06:13:30,477] [Preprocessor.java:241] [main] Processing chromosome C30482 Processing chromosome C30482 INFO [2014-03-08 06:13:30,485] [Preprocessor.java:241] [main] Processing chromosome C30496 Processing chromosome C30496 INFO [2014-03-08 06:13:30,509] [Preprocessor.java:241] [main] Processing chromosome C30498 Processing chromosome C30498 INFO [2014-03-08 06:13:30,518] [Preprocessor.java:241] [main] Processing chromosome C30500 Processing chromosome C30500 INFO [2014-03-08 06:13:30,536] [Preprocessor.java:241] [main] Processing chromosome C30504 Processing chromosome C30504 INFO [2014-03-08 06:13:30,555] [Preprocessor.java:241] [main] Processing chromosome C30506 Processing chromosome C30506 INFO [2014-03-08 06:13:30,574] [Preprocessor.java:241] [main] Processing chromosome C30508 Processing chromosome C30508 INFO [2014-03-08 06:13:30,592] [Preprocessor.java:241] [main] Processing chromosome C30514 Processing chromosome C30514 INFO [2014-03-08 06:13:30,632] [Preprocessor.java:241] [main] Processing chromosome C30522 Processing chromosome C30522 INFO [2014-03-08 06:13:30,642] [Preprocessor.java:241] [main] Processing chromosome C30526 Processing chromosome C30526 INFO [2014-03-08 06:13:30,669] [Preprocessor.java:241] [main] Processing chromosome C30534 Processing chromosome C30534 INFO [2014-03-08 06:13:30,678] [Preprocessor.java:241] [main] Processing chromosome C30538 Processing chromosome C30538 INFO [2014-03-08 06:13:30,684] [Preprocessor.java:241] [main] Processing chromosome C30542 Processing chromosome C30542 INFO [2014-03-08 06:13:30,689] [Preprocessor.java:241] [main] Processing chromosome C30560 Processing chromosome C30560 INFO [2014-03-08 06:13:30,714] [Preprocessor.java:241] [main] Processing chromosome C30566 Processing chromosome C30566 INFO [2014-03-08 06:13:30,741] [Preprocessor.java:241] [main] Processing chromosome C30570 Processing chromosome C30570 INFO [2014-03-08 06:13:30,768] [Preprocessor.java:241] [main] Processing chromosome C30576 Processing chromosome C30576 INFO [2014-03-08 06:13:30,774] [Preprocessor.java:241] [main] Processing chromosome C30582 Processing chromosome C30582 INFO [2014-03-08 06:13:30,783] [Preprocessor.java:241] [main] Processing chromosome C30584 Processing chromosome C30584 INFO [2014-03-08 06:13:30,810] [Preprocessor.java:241] [main] Processing chromosome C30592 Processing chromosome C30592 INFO [2014-03-08 06:13:30,817] [Preprocessor.java:241] [main] Processing chromosome C30608 Processing chromosome C30608 INFO [2014-03-08 06:13:30,841] [Preprocessor.java:241] [main] Processing chromosome C30620 Processing chromosome C30620 INFO [2014-03-08 06:13:30,862] [Preprocessor.java:241] [main] Processing chromosome C30622 Processing chromosome C30622 INFO [2014-03-08 06:13:30,880] [Preprocessor.java:241] [main] Processing chromosome C30632 Processing chromosome C30632 INFO [2014-03-08 06:13:30,917] [Preprocessor.java:241] [main] Processing chromosome C30662 Processing chromosome C30662 INFO [2014-03-08 06:13:30,927] [Preprocessor.java:241] [main] Processing chromosome C30668 Processing chromosome C30668 INFO [2014-03-08 06:13:30,938] [Preprocessor.java:241] [main] Processing chromosome C30680 Processing chromosome C30680 INFO [2014-03-08 06:13:30,964] [Preprocessor.java:241] [main] Processing chromosome C30694 Processing chromosome C30694 INFO [2014-03-08 06:13:30,979] [Preprocessor.java:241] [main] Processing chromosome C30708 Processing chromosome C30708 INFO [2014-03-08 06:13:31,003] [Preprocessor.java:241] [main] Processing chromosome C30724 Processing chromosome C30724 INFO [2014-03-08 06:13:31,037] [Preprocessor.java:241] [main] Processing chromosome C30728 Processing chromosome C30728 INFO [2014-03-08 06:13:31,042] [Preprocessor.java:241] [main] Processing chromosome C30736 Processing chromosome C30736 INFO [2014-03-08 06:13:31,049] [Preprocessor.java:241] [main] Processing chromosome C30746 Processing chromosome C30746 INFO [2014-03-08 06:13:31,054] [Preprocessor.java:241] [main] Processing chromosome C30752 Processing chromosome C30752 INFO [2014-03-08 06:13:31,056] [Preprocessor.java:241] [main] Processing chromosome C30754 Processing chromosome C30754 INFO [2014-03-08 06:13:31,095] [Preprocessor.java:241] [main] Processing chromosome C30756 Processing chromosome C30756 INFO [2014-03-08 06:13:31,101] [Preprocessor.java:241] [main] Processing chromosome C30766 Processing chromosome C30766 INFO [2014-03-08 06:13:31,105] [Preprocessor.java:241] [main] Processing chromosome C30768 Processing chromosome C30768 INFO [2014-03-08 06:13:31,120] [Preprocessor.java:241] [main] Processing chromosome C30770 Processing chromosome C30770 INFO [2014-03-08 06:13:31,132] [Preprocessor.java:241] [main] Processing chromosome C30792 Processing chromosome C30792 INFO [2014-03-08 06:13:31,144] [Preprocessor.java:241] [main] Processing chromosome C30796 Processing chromosome C30796 INFO [2014-03-08 06:13:31,178] [Preprocessor.java:241] [main] Processing chromosome C30800 Processing chromosome C30800 INFO [2014-03-08 06:13:31,188] [Preprocessor.java:241] [main] Processing chromosome C30802 Processing chromosome C30802 INFO [2014-03-08 06:13:31,196] [Preprocessor.java:241] [main] Processing chromosome C30804 Processing chromosome C30804 INFO [2014-03-08 06:13:31,202] [Preprocessor.java:241] [main] Processing chromosome C30806 Processing chromosome C30806 INFO [2014-03-08 06:13:31,223] [Preprocessor.java:241] [main] Processing chromosome C30816 Processing chromosome C30816 INFO [2014-03-08 06:13:31,249] [Preprocessor.java:241] [main] Processing chromosome C30820 Processing chromosome C30820 INFO [2014-03-08 06:13:31,256] [Preprocessor.java:241] [main] Processing chromosome C30832 Processing chromosome C30832 INFO [2014-03-08 06:13:31,261] [Preprocessor.java:241] [main] Processing chromosome C30848 Processing chromosome C30848 INFO [2014-03-08 06:13:31,285] [Preprocessor.java:241] [main] Processing chromosome C30852 Processing chromosome C30852 INFO [2014-03-08 06:13:31,330] [Preprocessor.java:241] [main] Processing chromosome C30862 Processing chromosome C30862 INFO [2014-03-08 06:13:31,353] [Preprocessor.java:241] [main] Processing chromosome C30870 Processing chromosome C30870 INFO [2014-03-08 06:13:31,363] [Preprocessor.java:241] [main] Processing chromosome C30872 Processing chromosome C30872 INFO [2014-03-08 06:13:31,378] [Preprocessor.java:241] [main] Processing chromosome C30874 Processing chromosome C30874 INFO [2014-03-08 06:13:31,407] [Preprocessor.java:241] [main] Processing chromosome C30882 Processing chromosome C30882 INFO [2014-03-08 06:13:31,414] [Preprocessor.java:241] [main] Processing chromosome C30886 Processing chromosome C30886 INFO [2014-03-08 06:13:31,421] [Preprocessor.java:241] [main] Processing chromosome C30898 Processing chromosome C30898 INFO [2014-03-08 06:13:31,440] [Preprocessor.java:241] [main] Processing chromosome C30904 Processing chromosome C30904 INFO [2014-03-08 06:13:31,442] [Preprocessor.java:241] [main] Processing chromosome C30908 Processing chromosome C30908 INFO [2014-03-08 06:13:31,454] [Preprocessor.java:241] [main] Processing chromosome C30924 Processing chromosome C30924 INFO [2014-03-08 06:13:31,461] [Preprocessor.java:241] [main] Processing chromosome C30946 Processing chromosome C30946 INFO [2014-03-08 06:13:31,472] [Preprocessor.java:241] [main] Processing chromosome C30954 Processing chromosome C30954 INFO [2014-03-08 06:13:31,510] [Preprocessor.java:241] [main] Processing chromosome C30956 Processing chromosome C30956 INFO [2014-03-08 06:13:31,520] [Preprocessor.java:241] [main] Processing chromosome C30958 Processing chromosome C30958 INFO [2014-03-08 06:13:31,536] [Preprocessor.java:241] [main] Processing chromosome C30966 Processing chromosome C30966 INFO [2014-03-08 06:13:31,560] [Preprocessor.java:241] [main] Processing chromosome C30974 Processing chromosome C30974 INFO [2014-03-08 06:13:31,584] [Preprocessor.java:241] [main] Processing chromosome C30980 Processing chromosome C30980 INFO [2014-03-08 06:13:31,587] [Preprocessor.java:241] [main] Processing chromosome C30982 Processing chromosome C30982 INFO [2014-03-08 06:13:31,601] [Preprocessor.java:241] [main] Processing chromosome C30988 Processing chromosome C30988 INFO [2014-03-08 06:13:31,611] [Preprocessor.java:241] [main] Processing chromosome C30994 Processing chromosome C30994 INFO [2014-03-08 06:13:31,629] [Preprocessor.java:241] [main] Processing chromosome C30998 Processing chromosome C30998 INFO [2014-03-08 06:13:31,648] [Preprocessor.java:241] [main] Processing chromosome C31004 Processing chromosome C31004 INFO [2014-03-08 06:13:31,662] [Preprocessor.java:241] [main] Processing chromosome C31012 Processing chromosome C31012 INFO [2014-03-08 06:13:31,699] [Preprocessor.java:241] [main] Processing chromosome C31020 Processing chromosome C31020 INFO [2014-03-08 06:13:31,728] [Preprocessor.java:241] [main] Processing chromosome C31022 Processing chromosome C31022 INFO [2014-03-08 06:13:31,733] [Preprocessor.java:241] [main] Processing chromosome C31036 Processing chromosome C31036 INFO [2014-03-08 06:13:31,780] [Preprocessor.java:241] [main] Processing chromosome C31056 Processing chromosome C31056 INFO [2014-03-08 06:13:31,803] [Preprocessor.java:241] [main] Processing chromosome C31060 Processing chromosome C31060 INFO [2014-03-08 06:13:31,835] [Preprocessor.java:241] [main] Processing chromosome C31062 Processing chromosome C31062 INFO [2014-03-08 06:13:31,846] [Preprocessor.java:241] [main] Processing chromosome C31070 Processing chromosome C31070 INFO [2014-03-08 06:13:31,863] [Preprocessor.java:241] [main] Processing chromosome C31072 Processing chromosome C31072 INFO [2014-03-08 06:13:31,869] [Preprocessor.java:241] [main] Processing chromosome C31096 Processing chromosome C31096 INFO [2014-03-08 06:13:31,917] [Preprocessor.java:241] [main] Processing chromosome C31104 Processing chromosome C31104 INFO [2014-03-08 06:13:31,921] [Preprocessor.java:241] [main] Processing chromosome C31106 Processing chromosome C31106 INFO [2014-03-08 06:13:31,945] [Preprocessor.java:241] [main] Processing chromosome C31130 Processing chromosome C31130 INFO [2014-03-08 06:13:31,973] [Preprocessor.java:241] [main] Processing chromosome C31132 Processing chromosome C31132 INFO [2014-03-08 06:13:31,992] [Preprocessor.java:241] [main] Processing chromosome C31144 Processing chromosome C31144 INFO [2014-03-08 06:13:31,998] [Preprocessor.java:241] [main] Processing chromosome C31156 Processing chromosome C31156 INFO [2014-03-08 06:13:32,007] [Preprocessor.java:241] [main] Processing chromosome C3117 Processing chromosome C3117 INFO [2014-03-08 06:13:32,060] [Preprocessor.java:241] [main] Processing chromosome C31176 Processing chromosome C31176 INFO [2014-03-08 06:13:32,064] [Preprocessor.java:241] [main] Processing chromosome C31202 Processing chromosome C31202 INFO [2014-03-08 06:13:32,067] [Preprocessor.java:241] [main] Processing chromosome C31242 Processing chromosome C31242 INFO [2014-03-08 06:13:32,072] [Preprocessor.java:241] [main] Processing chromosome C31246 Processing chromosome C31246 INFO [2014-03-08 06:13:32,075] [Preprocessor.java:241] [main] Processing chromosome C31256 Processing chromosome C31256 INFO [2014-03-08 06:13:32,097] [Preprocessor.java:241] [main] Processing chromosome C31260 Processing chromosome C31260 INFO [2014-03-08 06:13:32,115] [Preprocessor.java:241] [main] Processing chromosome C31262 Processing chromosome C31262 INFO [2014-03-08 06:13:32,127] [Preprocessor.java:241] [main] Processing chromosome C31264 Processing chromosome C31264 INFO [2014-03-08 06:13:32,141] [Preprocessor.java:241] [main] Processing chromosome C31270 Processing chromosome C31270 INFO [2014-03-08 06:13:32,151] [Preprocessor.java:241] [main] Processing chromosome C31278 Processing chromosome C31278 INFO [2014-03-08 06:13:32,161] [Preprocessor.java:241] [main] Processing chromosome C31292 Processing chromosome C31292 INFO [2014-03-08 06:13:32,174] [Preprocessor.java:241] [main] Processing chromosome C31300 Processing chromosome C31300 INFO [2014-03-08 06:13:32,176] [Preprocessor.java:241] [main] Processing chromosome C31304 Processing chromosome C31304 INFO [2014-03-08 06:13:32,180] [Preprocessor.java:241] [main] Processing chromosome C31322 Processing chromosome C31322 INFO [2014-03-08 06:13:32,192] [Preprocessor.java:241] [main] Processing chromosome C31324 Processing chromosome C31324 INFO [2014-03-08 06:13:32,202] [Preprocessor.java:241] [main] Processing chromosome C31336 Processing chromosome C31336 INFO [2014-03-08 06:13:32,224] [Preprocessor.java:241] [main] Processing chromosome C31340 Processing chromosome C31340 INFO [2014-03-08 06:13:32,235] [Preprocessor.java:241] [main] Processing chromosome C31346 Processing chromosome C31346 INFO [2014-03-08 06:13:32,241] [Preprocessor.java:241] [main] Processing chromosome C31354 Processing chromosome C31354 INFO [2014-03-08 06:13:32,249] [Preprocessor.java:241] [main] Processing chromosome C31366 Processing chromosome C31366 INFO [2014-03-08 06:13:32,253] [Preprocessor.java:241] [main] Processing chromosome C3137 Processing chromosome C3137 INFO [2014-03-08 06:13:32,283] [Preprocessor.java:241] [main] Processing chromosome C31370 Processing chromosome C31370 INFO [2014-03-08 06:13:32,308] [Preprocessor.java:241] [main] Processing chromosome C31380 Processing chromosome C31380 INFO [2014-03-08 06:13:32,323] [Preprocessor.java:241] [main] Processing chromosome C31386 Processing chromosome C31386 INFO [2014-03-08 06:13:32,326] [Preprocessor.java:241] [main] Processing chromosome C31390 Processing chromosome C31390 INFO [2014-03-08 06:13:32,345] [Preprocessor.java:241] [main] Processing chromosome C31396 Processing chromosome C31396 INFO [2014-03-08 06:13:32,360] [Preprocessor.java:241] [main] Processing chromosome C31398 Processing chromosome C31398 INFO [2014-03-08 06:13:32,366] [Preprocessor.java:241] [main] Processing chromosome C31400 Processing chromosome C31400 INFO [2014-03-08 06:13:32,469] [Preprocessor.java:241] [main] Processing chromosome C31408 Processing chromosome C31408 INFO [2014-03-08 06:13:32,481] [Preprocessor.java:241] [main] Processing chromosome C31410 Processing chromosome C31410 INFO [2014-03-08 06:13:32,507] [Preprocessor.java:241] [main] Processing chromosome C31414 Processing chromosome C31414 INFO [2014-03-08 06:13:32,530] [Preprocessor.java:241] [main] Processing chromosome C31442 Processing chromosome C31442 INFO [2014-03-08 06:13:32,537] [Preprocessor.java:241] [main] Processing chromosome C31446 Processing chromosome C31446 INFO [2014-03-08 06:13:32,541] [Preprocessor.java:241] [main] Processing chromosome C3145 Processing chromosome C3145 INFO [2014-03-08 06:13:32,570] [Preprocessor.java:241] [main] Processing chromosome C31458 Processing chromosome C31458 INFO [2014-03-08 06:13:32,618] [Preprocessor.java:241] [main] Processing chromosome C31460 Processing chromosome C31460 INFO [2014-03-08 06:13:32,634] [Preprocessor.java:241] [main] Processing chromosome C31466 Processing chromosome C31466 INFO [2014-03-08 06:13:32,665] [Preprocessor.java:241] [main] Processing chromosome C31482 Processing chromosome C31482 INFO [2014-03-08 06:13:32,672] [Preprocessor.java:241] [main] Processing chromosome C31486 Processing chromosome C31486 INFO [2014-03-08 06:13:32,694] [Preprocessor.java:241] [main] Processing chromosome C31488 Processing chromosome C31488 INFO [2014-03-08 06:13:32,744] [Preprocessor.java:241] [main] Processing chromosome C31500 Processing chromosome C31500 INFO [2014-03-08 06:13:32,757] [Preprocessor.java:241] [main] Processing chromosome C31504 Processing chromosome C31504 INFO [2014-03-08 06:13:32,776] [Preprocessor.java:241] [main] Processing chromosome C3151 Processing chromosome C3151 INFO [2014-03-08 06:13:32,830] [Preprocessor.java:241] [main] Processing chromosome C31510 Processing chromosome C31510 INFO [2014-03-08 06:13:32,838] [Preprocessor.java:241] [main] Processing chromosome C31526 Processing chromosome C31526 INFO [2014-03-08 06:13:32,858] [Preprocessor.java:241] [main] Processing chromosome C31542 Processing chromosome C31542 INFO [2014-03-08 06:13:32,868] [Preprocessor.java:241] [main] Processing chromosome C31546 Processing chromosome C31546 INFO [2014-03-08 06:13:32,889] [Preprocessor.java:241] [main] Processing chromosome C31564 Processing chromosome C31564 INFO [2014-03-08 06:13:32,907] [Preprocessor.java:241] [main] Processing chromosome C31572 Processing chromosome C31572 INFO [2014-03-08 06:13:32,928] [Preprocessor.java:241] [main] Processing chromosome C31574 Processing chromosome C31574 INFO [2014-03-08 06:13:32,936] [Preprocessor.java:241] [main] Processing chromosome C31584 Processing chromosome C31584 INFO [2014-03-08 06:13:32,953] [Preprocessor.java:241] [main] Processing chromosome C31590 Processing chromosome C31590 INFO [2014-03-08 06:13:32,958] [Preprocessor.java:241] [main] Processing chromosome C31602 Processing chromosome C31602 INFO [2014-03-08 06:13:32,966] [Preprocessor.java:241] [main] Processing chromosome C31626 Processing chromosome C31626 INFO [2014-03-08 06:13:32,971] [Preprocessor.java:241] [main] Processing chromosome C31630 Processing chromosome C31630 INFO [2014-03-08 06:13:32,979] [Preprocessor.java:241] [main] Processing chromosome C31632 Processing chromosome C31632 INFO [2014-03-08 06:13:32,990] [Preprocessor.java:241] [main] Processing chromosome C31644 Processing chromosome C31644 INFO [2014-03-08 06:13:33,055] [Preprocessor.java:241] [main] Processing chromosome C31654 Processing chromosome C31654 INFO [2014-03-08 06:13:33,077] [Preprocessor.java:241] [main] Processing chromosome C31668 Processing chromosome C31668 INFO [2014-03-08 06:13:33,091] [Preprocessor.java:241] [main] Processing chromosome C31694 Processing chromosome C31694 INFO [2014-03-08 06:13:33,109] [Preprocessor.java:241] [main] Processing chromosome C31698 Processing chromosome C31698 INFO [2014-03-08 06:13:33,135] [Preprocessor.java:241] [main] Processing chromosome C31706 Processing chromosome C31706 INFO [2014-03-08 06:13:33,160] [Preprocessor.java:241] [main] Processing chromosome C31714 Processing chromosome C31714 INFO [2014-03-08 06:13:33,175] [Preprocessor.java:241] [main] Processing chromosome C31724 Processing chromosome C31724 INFO [2014-03-08 06:13:33,197] [Preprocessor.java:241] [main] Processing chromosome C31730 Processing chromosome C31730 INFO [2014-03-08 06:13:33,215] [Preprocessor.java:241] [main] Processing chromosome C31738 Processing chromosome C31738 INFO [2014-03-08 06:13:33,237] [Preprocessor.java:241] [main] Processing chromosome C31746 Processing chromosome C31746 INFO [2014-03-08 06:13:33,258] [Preprocessor.java:241] [main] Processing chromosome C3175 Processing chromosome C3175 INFO [2014-03-08 06:13:33,288] [Preprocessor.java:241] [main] Processing chromosome C31762 Processing chromosome C31762 INFO [2014-03-08 06:13:33,315] [Preprocessor.java:241] [main] Processing chromosome C31776 Processing chromosome C31776 INFO [2014-03-08 06:13:33,321] [Preprocessor.java:241] [main] Processing chromosome C31778 Processing chromosome C31778 INFO [2014-03-08 06:13:33,337] [Preprocessor.java:241] [main] Processing chromosome C3179 Processing chromosome C3179 INFO [2014-03-08 06:13:33,367] [Preprocessor.java:241] [main] Processing chromosome C31806 Processing chromosome C31806 INFO [2014-03-08 06:13:33,395] [Preprocessor.java:241] [main] Processing chromosome C31808 Processing chromosome C31808 INFO [2014-03-08 06:13:33,417] [Preprocessor.java:241] [main] Processing chromosome C31814 Processing chromosome C31814 INFO [2014-03-08 06:13:33,425] [Preprocessor.java:241] [main] Processing chromosome C31828 Processing chromosome C31828 INFO [2014-03-08 06:13:33,441] [Preprocessor.java:241] [main] Processing chromosome C3183 Processing chromosome C3183 INFO [2014-03-08 06:13:33,491] [Preprocessor.java:241] [main] Processing chromosome C31832 Processing chromosome C31832 INFO [2014-03-08 06:13:33,498] [Preprocessor.java:241] [main] Processing chromosome C31838 Processing chromosome C31838 INFO [2014-03-08 06:13:33,510] [Preprocessor.java:241] [main] Processing chromosome C31840 Processing chromosome C31840 INFO [2014-03-08 06:13:33,517] [Preprocessor.java:241] [main] Processing chromosome C31846 Processing chromosome C31846 INFO [2014-03-08 06:13:33,523] [Preprocessor.java:241] [main] Processing chromosome C31876 Processing chromosome C31876 INFO [2014-03-08 06:13:33,529] [Preprocessor.java:241] [main] Processing chromosome C31882 Processing chromosome C31882 INFO [2014-03-08 06:13:33,546] [Preprocessor.java:241] [main] Processing chromosome C31884 Processing chromosome C31884 INFO [2014-03-08 06:13:33,550] [Preprocessor.java:241] [main] Processing chromosome C31896 Processing chromosome C31896 INFO [2014-03-08 06:13:33,579] [Preprocessor.java:241] [main] Processing chromosome C31902 Processing chromosome C31902 INFO [2014-03-08 06:13:33,590] [Preprocessor.java:241] [main] Processing chromosome C31910 Processing chromosome C31910 INFO [2014-03-08 06:13:33,606] [Preprocessor.java:241] [main] Processing chromosome C31912 Processing chromosome C31912 INFO [2014-03-08 06:13:33,616] [Preprocessor.java:241] [main] Processing chromosome C31940 Processing chromosome C31940 INFO [2014-03-08 06:13:33,630] [Preprocessor.java:241] [main] Processing chromosome C31952 Processing chromosome C31952 INFO [2014-03-08 06:13:33,632] [Preprocessor.java:241] [main] Processing chromosome C31964 Processing chromosome C31964 INFO [2014-03-08 06:13:33,660] [Preprocessor.java:241] [main] Processing chromosome C3197 Processing chromosome C3197 INFO [2014-03-08 06:13:33,741] [Preprocessor.java:241] [main] Processing chromosome C31978 Processing chromosome C31978 INFO [2014-03-08 06:13:33,766] [Preprocessor.java:241] [main] Processing chromosome C31982 Processing chromosome C31982 INFO [2014-03-08 06:13:33,771] [Preprocessor.java:241] [main] Processing chromosome C31986 Processing chromosome C31986 INFO [2014-03-08 06:13:33,806] [Preprocessor.java:241] [main] Processing chromosome C31988 Processing chromosome C31988 INFO [2014-03-08 06:13:33,843] [Preprocessor.java:241] [main] Processing chromosome C31996 Processing chromosome C31996 INFO [2014-03-08 06:13:33,863] [Preprocessor.java:241] [main] Processing chromosome C32002 Processing chromosome C32002 INFO [2014-03-08 06:13:33,881] [Preprocessor.java:241] [main] Processing chromosome C32006 Processing chromosome C32006 INFO [2014-03-08 06:13:33,890] [Preprocessor.java:241] [main] Processing chromosome C32026 Processing chromosome C32026 INFO [2014-03-08 06:13:33,897] [Preprocessor.java:241] [main] Processing chromosome C32028 Processing chromosome C32028 INFO [2014-03-08 06:13:33,901] [Preprocessor.java:241] [main] Processing chromosome C32054 Processing chromosome C32054 INFO [2014-03-08 06:13:33,905] [Preprocessor.java:241] [main] Processing chromosome C32056 Processing chromosome C32056 INFO [2014-03-08 06:13:33,921] [Preprocessor.java:241] [main] Processing chromosome C32082 Processing chromosome C32082 INFO [2014-03-08 06:13:33,942] [Preprocessor.java:241] [main] Processing chromosome C32084 Processing chromosome C32084 INFO [2014-03-08 06:13:33,984] [Preprocessor.java:241] [main] Processing chromosome C32088 Processing chromosome C32088 INFO [2014-03-08 06:13:33,990] [Preprocessor.java:241] [main] Processing chromosome C32098 Processing chromosome C32098 INFO [2014-03-08 06:13:34,005] [Preprocessor.java:241] [main] Processing chromosome C32106 Processing chromosome C32106 INFO [2014-03-08 06:13:34,013] [Preprocessor.java:241] [main] Processing chromosome C32108 Processing chromosome C32108 INFO [2014-03-08 06:13:34,020] [Preprocessor.java:241] [main] Processing chromosome C32110 Processing chromosome C32110 INFO [2014-03-08 06:13:34,040] [Preprocessor.java:241] [main] Processing chromosome C32122 Processing chromosome C32122 INFO [2014-03-08 06:13:34,048] [Preprocessor.java:241] [main] Processing chromosome C32130 Processing chromosome C32130 INFO [2014-03-08 06:13:34,050] [Preprocessor.java:241] [main] Processing chromosome C32136 Processing chromosome C32136 INFO [2014-03-08 06:13:34,066] [Preprocessor.java:241] [main] Processing chromosome C32150 Processing chromosome C32150 INFO [2014-03-08 06:13:34,070] [Preprocessor.java:241] [main] Processing chromosome C32156 Processing chromosome C32156 INFO [2014-03-08 06:13:34,108] [Preprocessor.java:241] [main] Processing chromosome C32176 Processing chromosome C32176 INFO [2014-03-08 06:13:34,120] [Preprocessor.java:241] [main] Processing chromosome C32184 Processing chromosome C32184 INFO [2014-03-08 06:13:34,132] [Preprocessor.java:241] [main] Processing chromosome C32186 Processing chromosome C32186 INFO [2014-03-08 06:13:34,138] [Preprocessor.java:241] [main] Processing chromosome C32196 Processing chromosome C32196 INFO [2014-03-08 06:13:34,169] [Preprocessor.java:241] [main] Processing chromosome C32216 Processing chromosome C32216 INFO [2014-03-08 06:13:34,241] [Preprocessor.java:241] [main] Processing chromosome C32222 Processing chromosome C32222 INFO [2014-03-08 06:13:34,262] [Preprocessor.java:241] [main] Processing chromosome C32224 Processing chromosome C32224 INFO [2014-03-08 06:13:34,288] [Preprocessor.java:241] [main] Processing chromosome C32228 Processing chromosome C32228 INFO [2014-03-08 06:13:34,303] [Preprocessor.java:241] [main] Processing chromosome C32240 Processing chromosome C32240 INFO [2014-03-08 06:13:34,321] [Preprocessor.java:241] [main] Processing chromosome C32242 Processing chromosome C32242 INFO [2014-03-08 06:13:34,331] [Preprocessor.java:241] [main] Processing chromosome C32246 Processing chromosome C32246 INFO [2014-03-08 06:13:34,352] [Preprocessor.java:241] [main] Processing chromosome C3225 Processing chromosome C3225 INFO [2014-03-08 06:13:34,684] [Preprocessor.java:241] [main] Processing chromosome C32260 Processing chromosome C32260 INFO [2014-03-08 06:13:34,714] [Preprocessor.java:241] [main] Processing chromosome C32264 Processing chromosome C32264 INFO [2014-03-08 06:13:34,733] [Preprocessor.java:241] [main] Processing chromosome C32270 Processing chromosome C32270 INFO [2014-03-08 06:13:34,746] [Preprocessor.java:241] [main] Processing chromosome C32272 Processing chromosome C32272 INFO [2014-03-08 06:13:34,761] [Preprocessor.java:241] [main] Processing chromosome C32276 Processing chromosome C32276 INFO [2014-03-08 06:13:34,777] [Preprocessor.java:241] [main] Processing chromosome C32278 Processing chromosome C32278 INFO [2014-03-08 06:13:34,782] [Preprocessor.java:241] [main] Processing chromosome C32292 Processing chromosome C32292 INFO [2014-03-08 06:13:34,804] [Preprocessor.java:241] [main] Processing chromosome C3231 Processing chromosome C3231 INFO [2014-03-08 06:13:34,835] [Preprocessor.java:241] [main] Processing chromosome C32314 Processing chromosome C32314 INFO [2014-03-08 06:13:34,867] [Preprocessor.java:241] [main] Processing chromosome C32318 Processing chromosome C32318 INFO [2014-03-08 06:13:34,874] [Preprocessor.java:241] [main] Processing chromosome C32328 Processing chromosome C32328 INFO [2014-03-08 06:13:34,887] [Preprocessor.java:241] [main] Processing chromosome C32340 Processing chromosome C32340 INFO [2014-03-08 06:13:34,890] [Preprocessor.java:241] [main] Processing chromosome C32382 Processing chromosome C32382 INFO [2014-03-08 06:13:34,892] [Preprocessor.java:241] [main] Processing chromosome C32390 Processing chromosome C32390 INFO [2014-03-08 06:13:34,902] [Preprocessor.java:241] [main] Processing chromosome C32398 Processing chromosome C32398 INFO [2014-03-08 06:13:34,913] [Preprocessor.java:241] [main] Processing chromosome C32402 Processing chromosome C32402 INFO [2014-03-08 06:13:34,933] [Preprocessor.java:241] [main] Processing chromosome C32406 Processing chromosome C32406 INFO [2014-03-08 06:13:34,961] [Preprocessor.java:241] [main] Processing chromosome C32424 Processing chromosome C32424 INFO [2014-03-08 06:13:35,006] [Preprocessor.java:241] [main] Processing chromosome C32426 Processing chromosome C32426 INFO [2014-03-08 06:13:35,040] [Preprocessor.java:241] [main] Processing chromosome C32438 Processing chromosome C32438 INFO [2014-03-08 06:13:35,050] [Preprocessor.java:241] [main] Processing chromosome C32444 Processing chromosome C32444 INFO [2014-03-08 06:13:35,076] [Preprocessor.java:241] [main] Processing chromosome C32458 Processing chromosome C32458 INFO [2014-03-08 06:13:35,079] [Preprocessor.java:241] [main] Processing chromosome C32468 Processing chromosome C32468 INFO [2014-03-08 06:13:35,110] [Preprocessor.java:241] [main] Processing chromosome C32472 Processing chromosome C32472 INFO [2014-03-08 06:13:35,120] [Preprocessor.java:241] [main] Processing chromosome C32482 Processing chromosome C32482 INFO [2014-03-08 06:13:35,131] [Preprocessor.java:241] [main] Processing chromosome C32484 Processing chromosome C32484 INFO [2014-03-08 06:13:35,164] [Preprocessor.java:241] [main] Processing chromosome C3249 Processing chromosome C3249 INFO [2014-03-08 06:13:35,221] [Preprocessor.java:241] [main] Processing chromosome C32512 Processing chromosome C32512 INFO [2014-03-08 06:13:35,253] [Preprocessor.java:241] [main] Processing chromosome C32516 Processing chromosome C32516 INFO [2014-03-08 06:13:35,267] [Preprocessor.java:241] [main] Processing chromosome C32532 Processing chromosome C32532 INFO [2014-03-08 06:13:35,286] [Preprocessor.java:241] [main] Processing chromosome C32536 Processing chromosome C32536 INFO [2014-03-08 06:13:35,302] [Preprocessor.java:241] [main] Processing chromosome C32542 Processing chromosome C32542 INFO [2014-03-08 06:13:35,340] [Preprocessor.java:241] [main] Processing chromosome C32552 Processing chromosome C32552 INFO [2014-03-08 06:13:35,368] [Preprocessor.java:241] [main] Processing chromosome C32554 Processing chromosome C32554 INFO [2014-03-08 06:13:35,388] [Preprocessor.java:241] [main] Processing chromosome C32568 Processing chromosome C32568 INFO [2014-03-08 06:13:35,412] [Preprocessor.java:241] [main] Processing chromosome C32576 Processing chromosome C32576 INFO [2014-03-08 06:13:35,421] [Preprocessor.java:241] [main] Processing chromosome C32578 Processing chromosome C32578 INFO [2014-03-08 06:13:35,438] [Preprocessor.java:241] [main] Processing chromosome C32582 Processing chromosome C32582 INFO [2014-03-08 06:13:35,441] [Preprocessor.java:241] [main] Processing chromosome C32596 Processing chromosome C32596 INFO [2014-03-08 06:13:35,464] [Preprocessor.java:241] [main] Processing chromosome C32606 Processing chromosome C32606 INFO [2014-03-08 06:13:35,491] [Preprocessor.java:241] [main] Processing chromosome C3261 Processing chromosome C3261 INFO [2014-03-08 06:13:35,548] [Preprocessor.java:241] [main] Processing chromosome C32614 Processing chromosome C32614 INFO [2014-03-08 06:13:35,568] [Preprocessor.java:241] [main] Processing chromosome C32636 Processing chromosome C32636 INFO [2014-03-08 06:13:35,592] [Preprocessor.java:241] [main] Processing chromosome C32644 Processing chromosome C32644 INFO [2014-03-08 06:13:35,600] [Preprocessor.java:241] [main] Processing chromosome C32654 Processing chromosome C32654 INFO [2014-03-08 06:13:35,634] [Preprocessor.java:241] [main] Processing chromosome C32656 Processing chromosome C32656 INFO [2014-03-08 06:13:35,666] [Preprocessor.java:241] [main] Processing chromosome C32660 Processing chromosome C32660 INFO [2014-03-08 06:13:35,692] [Preprocessor.java:241] [main] Processing chromosome C32674 Processing chromosome C32674 INFO [2014-03-08 06:13:35,698] [Preprocessor.java:241] [main] Processing chromosome C32682 Processing chromosome C32682 INFO [2014-03-08 06:13:35,709] [Preprocessor.java:241] [main] Processing chromosome C32694 Processing chromosome C32694 INFO [2014-03-08 06:13:35,722] [Preprocessor.java:241] [main] Processing chromosome C32714 Processing chromosome C32714 INFO [2014-03-08 06:13:35,760] [Preprocessor.java:241] [main] Processing chromosome C32728 Processing chromosome C32728 INFO [2014-03-08 06:13:35,767] [Preprocessor.java:241] [main] Processing chromosome C32748 Processing chromosome C32748 INFO [2014-03-08 06:13:35,771] [Preprocessor.java:241] [main] Processing chromosome C32772 Processing chromosome C32772 INFO [2014-03-08 06:13:35,773] [Preprocessor.java:241] [main] Processing chromosome C32774 Processing chromosome C32774 INFO [2014-03-08 06:13:35,796] [Preprocessor.java:241] [main] Processing chromosome C32778 Processing chromosome C32778 INFO [2014-03-08 06:13:35,802] [Preprocessor.java:241] [main] Processing chromosome C32794 Processing chromosome C32794 INFO [2014-03-08 06:13:35,804] [Preprocessor.java:241] [main] Processing chromosome C32810 Processing chromosome C32810 INFO [2014-03-08 06:13:35,820] [Preprocessor.java:241] [main] Processing chromosome C32812 Processing chromosome C32812 INFO [2014-03-08 06:13:35,835] [Preprocessor.java:241] [main] Processing chromosome C32814 Processing chromosome C32814 INFO [2014-03-08 06:13:35,868] [Preprocessor.java:241] [main] Processing chromosome C32818 Processing chromosome C32818 INFO [2014-03-08 06:13:35,873] [Preprocessor.java:241] [main] Processing chromosome C32838 Processing chromosome C32838 INFO [2014-03-08 06:13:35,879] [Preprocessor.java:241] [main] Processing chromosome C32842 Processing chromosome C32842 INFO [2014-03-08 06:13:35,891] [Preprocessor.java:241] [main] Processing chromosome C32848 Processing chromosome C32848 INFO [2014-03-08 06:13:35,909] [Preprocessor.java:241] [main] Processing chromosome C32884 Processing chromosome C32884 INFO [2014-03-08 06:13:35,925] [Preprocessor.java:241] [main] Processing chromosome C32888 Processing chromosome C32888 INFO [2014-03-08 06:13:35,934] [Preprocessor.java:241] [main] Processing chromosome C32906 Processing chromosome C32906 INFO [2014-03-08 06:13:35,960] [Preprocessor.java:241] [main] Processing chromosome C32914 Processing chromosome C32914 INFO [2014-03-08 06:13:35,965] [Preprocessor.java:241] [main] Processing chromosome C32918 Processing chromosome C32918 INFO [2014-03-08 06:13:35,974] [Preprocessor.java:241] [main] Processing chromosome C32930 Processing chromosome C32930 INFO [2014-03-08 06:13:36,004] [Preprocessor.java:241] [main] Processing chromosome C32966 Processing chromosome C32966 INFO [2014-03-08 06:13:36,012] [Preprocessor.java:241] [main] Processing chromosome C32974 Processing chromosome C32974 INFO [2014-03-08 06:13:36,016] [Preprocessor.java:241] [main] Processing chromosome C32984 Processing chromosome C32984 INFO [2014-03-08 06:13:36,033] [Preprocessor.java:241] [main] Processing chromosome C32986 Processing chromosome C32986 INFO [2014-03-08 06:13:36,049] [Preprocessor.java:241] [main] Processing chromosome C32992 Processing chromosome C32992 INFO [2014-03-08 06:13:36,073] [Preprocessor.java:241] [main] Processing chromosome C32994 Processing chromosome C32994 INFO [2014-03-08 06:13:36,097] [Preprocessor.java:241] [main] Processing chromosome C33024 Processing chromosome C33024 INFO [2014-03-08 06:13:36,102] [Preprocessor.java:241] [main] Processing chromosome C33038 Processing chromosome C33038 INFO [2014-03-08 06:13:36,108] [Preprocessor.java:241] [main] Processing chromosome C33084 Processing chromosome C33084 INFO [2014-03-08 06:13:36,118] [Preprocessor.java:241] [main] Processing chromosome C33102 Processing chromosome C33102 INFO [2014-03-08 06:13:36,159] [Preprocessor.java:241] [main] Processing chromosome C33126 Processing chromosome C33126 INFO [2014-03-08 06:13:36,170] [Preprocessor.java:241] [main] Processing chromosome C33128 Processing chromosome C33128 INFO [2014-03-08 06:13:36,199] [Preprocessor.java:241] [main] Processing chromosome C33136 Processing chromosome C33136 INFO [2014-03-08 06:13:36,220] [Preprocessor.java:241] [main] Processing chromosome C33148 Processing chromosome C33148 INFO [2014-03-08 06:13:36,246] [Preprocessor.java:241] [main] Processing chromosome C33162 Processing chromosome C33162 INFO [2014-03-08 06:13:36,251] [Preprocessor.java:241] [main] Processing chromosome C33172 Processing chromosome C33172 INFO [2014-03-08 06:13:36,261] [Preprocessor.java:241] [main] Processing chromosome C33174 Processing chromosome C33174 INFO [2014-03-08 06:13:36,267] [Preprocessor.java:241] [main] Processing chromosome C33176 Processing chromosome C33176 INFO [2014-03-08 06:13:36,268] [Preprocessor.java:241] [main] Processing chromosome C33182 Processing chromosome C33182 INFO [2014-03-08 06:13:36,275] [Preprocessor.java:241] [main] Processing chromosome C33188 Processing chromosome C33188 INFO [2014-03-08 06:13:36,284] [Preprocessor.java:241] [main] Processing chromosome C33200 Processing chromosome C33200 INFO [2014-03-08 06:13:36,298] [Preprocessor.java:241] [main] Processing chromosome C33204 Processing chromosome C33204 INFO [2014-03-08 06:13:36,309] [Preprocessor.java:241] [main] Processing chromosome C33220 Processing chromosome C33220 INFO [2014-03-08 06:13:36,338] [Preprocessor.java:241] [main] Processing chromosome C33222 Processing chromosome C33222 INFO [2014-03-08 06:13:36,343] [Preprocessor.java:241] [main] Processing chromosome C33230 Processing chromosome C33230 INFO [2014-03-08 06:13:36,355] [Preprocessor.java:241] [main] Processing chromosome C33236 Processing chromosome C33236 INFO [2014-03-08 06:13:36,372] [Preprocessor.java:241] [main] Processing chromosome C33244 Processing chromosome C33244 INFO [2014-03-08 06:13:36,397] [Preprocessor.java:241] [main] Processing chromosome C33256 Processing chromosome C33256 INFO [2014-03-08 06:13:36,414] [Preprocessor.java:241] [main] Processing chromosome C33260 Processing chromosome C33260 INFO [2014-03-08 06:13:36,438] [Preprocessor.java:241] [main] Processing chromosome C33308 Processing chromosome C33308 INFO [2014-03-08 06:13:36,461] [Preprocessor.java:241] [main] Processing chromosome C33310 Processing chromosome C33310 INFO [2014-03-08 06:13:36,481] [Preprocessor.java:241] [main] Processing chromosome C33320 Processing chromosome C33320 INFO [2014-03-08 06:13:36,497] [Preprocessor.java:241] [main] Processing chromosome C33332 Processing chromosome C33332 INFO [2014-03-08 06:13:36,502] [Preprocessor.java:241] [main] Processing chromosome C33368 Processing chromosome C33368 INFO [2014-03-08 06:13:36,519] [Preprocessor.java:241] [main] Processing chromosome C33378 Processing chromosome C33378 INFO [2014-03-08 06:13:36,537] [Preprocessor.java:241] [main] Processing chromosome C33408 Processing chromosome C33408 INFO [2014-03-08 06:13:36,555] [Preprocessor.java:241] [main] Processing chromosome C33436 Processing chromosome C33436 INFO [2014-03-08 06:13:36,562] [Preprocessor.java:241] [main] Processing chromosome C33442 Processing chromosome C33442 INFO [2014-03-08 06:13:36,579] [Preprocessor.java:241] [main] Processing chromosome C3345 Processing chromosome C3345 INFO [2014-03-08 06:13:36,622] [Preprocessor.java:241] [main] Processing chromosome C33464 Processing chromosome C33464 INFO [2014-03-08 06:13:36,662] [Preprocessor.java:241] [main] Processing chromosome C33472 Processing chromosome C33472 INFO [2014-03-08 06:13:36,683] [Preprocessor.java:241] [main] Processing chromosome C33478 Processing chromosome C33478 INFO [2014-03-08 06:13:36,702] [Preprocessor.java:241] [main] Processing chromosome C33482 Processing chromosome C33482 INFO [2014-03-08 06:13:36,705] [Preprocessor.java:241] [main] Processing chromosome C33496 Processing chromosome C33496 INFO [2014-03-08 06:13:36,707] [Preprocessor.java:241] [main] Processing chromosome C33510 Processing chromosome C33510 INFO [2014-03-08 06:13:36,733] [Preprocessor.java:241] [main] Processing chromosome C33524 Processing chromosome C33524 INFO [2014-03-08 06:13:36,741] [Preprocessor.java:241] [main] Processing chromosome C3353 Processing chromosome C3353 INFO [2014-03-08 06:13:36,770] [Preprocessor.java:241] [main] Processing chromosome C33534 Processing chromosome C33534 INFO [2014-03-08 06:13:36,801] [Preprocessor.java:241] [main] Processing chromosome C33560 Processing chromosome C33560 INFO [2014-03-08 06:13:36,805] [Preprocessor.java:241] [main] Processing chromosome C33576 Processing chromosome C33576 INFO [2014-03-08 06:13:36,814] [Preprocessor.java:241] [main] Processing chromosome C33580 Processing chromosome C33580 INFO [2014-03-08 06:13:36,828] [Preprocessor.java:241] [main] Processing chromosome C33592 Processing chromosome C33592 INFO [2014-03-08 06:13:36,850] [Preprocessor.java:241] [main] Processing chromosome C3361 Processing chromosome C3361 INFO [2014-03-08 06:13:36,904] [Preprocessor.java:241] [main] Processing chromosome C33614 Processing chromosome C33614 INFO [2014-03-08 06:13:36,912] [Preprocessor.java:241] [main] Processing chromosome C33646 Processing chromosome C33646 INFO [2014-03-08 06:13:36,930] [Preprocessor.java:241] [main] Processing chromosome C33654 Processing chromosome C33654 INFO [2014-03-08 06:13:36,946] [Preprocessor.java:241] [main] Processing chromosome C33658 Processing chromosome C33658 INFO [2014-03-08 06:13:36,965] [Preprocessor.java:241] [main] Processing chromosome C33664 Processing chromosome C33664 INFO [2014-03-08 06:13:37,009] [Preprocessor.java:241] [main] Processing chromosome C33666 Processing chromosome C33666 INFO [2014-03-08 06:13:37,026] [Preprocessor.java:241] [main] Processing chromosome C33688 Processing chromosome C33688 INFO [2014-03-08 06:13:37,059] [Preprocessor.java:241] [main] Processing chromosome C33708 Processing chromosome C33708 INFO [2014-03-08 06:13:37,091] [Preprocessor.java:241] [main] Processing chromosome C33730 Processing chromosome C33730 INFO [2014-03-08 06:13:37,109] [Preprocessor.java:241] [main] Processing chromosome C33734 Processing chromosome C33734 INFO [2014-03-08 06:13:37,129] [Preprocessor.java:241] [main] Processing chromosome C33748 Processing chromosome C33748 INFO [2014-03-08 06:13:37,159] [Preprocessor.java:241] [main] Processing chromosome C33762 Processing chromosome C33762 INFO [2014-03-08 06:13:37,196] [Preprocessor.java:241] [main] Processing chromosome C33776 Processing chromosome C33776 INFO [2014-03-08 06:13:37,206] [Preprocessor.java:241] [main] Processing chromosome C33812 Processing chromosome C33812 INFO [2014-03-08 06:13:37,228] [Preprocessor.java:241] [main] Processing chromosome C33864 Processing chromosome C33864 INFO [2014-03-08 06:13:37,242] [Preprocessor.java:241] [main] Processing chromosome C33892 Processing chromosome C33892 INFO [2014-03-08 06:13:37,262] [Preprocessor.java:241] [main] Processing chromosome C33918 Processing chromosome C33918 INFO [2014-03-08 06:13:37,271] [Preprocessor.java:241] [main] Processing chromosome C33952 Processing chromosome C33952 INFO [2014-03-08 06:13:37,294] [Preprocessor.java:241] [main] Processing chromosome C34010 Processing chromosome C34010 INFO [2014-03-08 06:13:37,328] [Preprocessor.java:241] [main] Processing chromosome C34066 Processing chromosome C34066 INFO [2014-03-08 06:13:37,351] [Preprocessor.java:241] [main] Processing chromosome C3407 Processing chromosome C3407 INFO [2014-03-08 06:13:37,402] [Preprocessor.java:241] [main] Processing chromosome C34072 Processing chromosome C34072 INFO [2014-03-08 06:13:37,413] [Preprocessor.java:241] [main] Processing chromosome C34104 Processing chromosome C34104 INFO [2014-03-08 06:13:37,422] [Preprocessor.java:241] [main] Processing chromosome C34110 Processing chromosome C34110 INFO [2014-03-08 06:13:37,429] [Preprocessor.java:241] [main] Processing chromosome C34112 Processing chromosome C34112 INFO [2014-03-08 06:13:37,433] [Preprocessor.java:241] [main] Processing chromosome C34116 Processing chromosome C34116 INFO [2014-03-08 06:13:37,439] [Preprocessor.java:241] [main] Processing chromosome C34120 Processing chromosome C34120 INFO [2014-03-08 06:13:37,445] [Preprocessor.java:241] [main] Processing chromosome C34122 Processing chromosome C34122 INFO [2014-03-08 06:13:37,459] [Preprocessor.java:241] [main] Processing chromosome C34136 Processing chromosome C34136 INFO [2014-03-08 06:13:37,483] [Preprocessor.java:241] [main] Processing chromosome C34158 Processing chromosome C34158 INFO [2014-03-08 06:13:37,527] [Preprocessor.java:241] [main] Processing chromosome C34160 Processing chromosome C34160 INFO [2014-03-08 06:13:37,561] [Preprocessor.java:241] [main] Processing chromosome C34166 Processing chromosome C34166 INFO [2014-03-08 06:13:37,584] [Preprocessor.java:241] [main] Processing chromosome C34174 Processing chromosome C34174 INFO [2014-03-08 06:13:37,602] [Preprocessor.java:241] [main] Processing chromosome C34176 Processing chromosome C34176 INFO [2014-03-08 06:13:37,623] [Preprocessor.java:241] [main] Processing chromosome C3419 Processing chromosome C3419 INFO [2014-03-08 06:13:37,653] [Preprocessor.java:241] [main] Processing chromosome C34200 Processing chromosome C34200 INFO [2014-03-08 06:13:37,691] [Preprocessor.java:241] [main] Processing chromosome C34208 Processing chromosome C34208 INFO [2014-03-08 06:13:37,707] [Preprocessor.java:241] [main] Processing chromosome C34218 Processing chromosome C34218 INFO [2014-03-08 06:13:37,719] [Preprocessor.java:241] [main] Processing chromosome C34226 Processing chromosome C34226 INFO [2014-03-08 06:13:37,733] [Preprocessor.java:241] [main] Processing chromosome C34250 Processing chromosome C34250 INFO [2014-03-08 06:13:37,749] [Preprocessor.java:241] [main] Processing chromosome C34256 Processing chromosome C34256 INFO [2014-03-08 06:13:37,784] [Preprocessor.java:241] [main] Processing chromosome C34270 Processing chromosome C34270 INFO [2014-03-08 06:13:37,830] [Preprocessor.java:241] [main] Processing chromosome C34272 Processing chromosome C34272 INFO [2014-03-08 06:13:37,835] [Preprocessor.java:241] [main] Processing chromosome C34274 Processing chromosome C34274 INFO [2014-03-08 06:13:37,876] [Preprocessor.java:241] [main] Processing chromosome C34286 Processing chromosome C34286 INFO [2014-03-08 06:13:37,904] [Preprocessor.java:241] [main] Processing chromosome C34288 Processing chromosome C34288 INFO [2014-03-08 06:13:37,909] [Preprocessor.java:241] [main] Processing chromosome C34300 Processing chromosome C34300 INFO [2014-03-08 06:13:37,926] [Preprocessor.java:241] [main] Processing chromosome C34310 Processing chromosome C34310 INFO [2014-03-08 06:13:37,940] [Preprocessor.java:241] [main] Processing chromosome C34320 Processing chromosome C34320 INFO [2014-03-08 06:13:37,962] [Preprocessor.java:241] [main] Processing chromosome C34340 Processing chromosome C34340 INFO [2014-03-08 06:13:37,999] [Preprocessor.java:241] [main] Processing chromosome C34372 Processing chromosome C34372 INFO [2014-03-08 06:13:38,010] [Preprocessor.java:241] [main] Processing chromosome C34402 Processing chromosome C34402 INFO [2014-03-08 06:13:38,020] [Preprocessor.java:241] [main] Processing chromosome C34406 Processing chromosome C34406 INFO [2014-03-08 06:13:38,030] [Preprocessor.java:241] [main] Processing chromosome C34408 Processing chromosome C34408 INFO [2014-03-08 06:13:38,034] [Preprocessor.java:241] [main] Processing chromosome C34418 Processing chromosome C34418 INFO [2014-03-08 06:13:38,057] [Preprocessor.java:241] [main] Processing chromosome C34436 Processing chromosome C34436 INFO [2014-03-08 06:13:38,081] [Preprocessor.java:241] [main] Processing chromosome C34444 Processing chromosome C34444 INFO [2014-03-08 06:13:38,100] [Preprocessor.java:241] [main] Processing chromosome C34458 Processing chromosome C34458 INFO [2014-03-08 06:13:38,118] [Preprocessor.java:241] [main] Processing chromosome C34464 Processing chromosome C34464 INFO [2014-03-08 06:13:38,143] [Preprocessor.java:241] [main] Processing chromosome C34466 Processing chromosome C34466 INFO [2014-03-08 06:13:38,151] [Preprocessor.java:241] [main] Processing chromosome C34488 Processing chromosome C34488 INFO [2014-03-08 06:13:38,174] [Preprocessor.java:241] [main] Processing chromosome C34496 Processing chromosome C34496 INFO [2014-03-08 06:13:38,177] [Preprocessor.java:241] [main] Processing chromosome C34516 Processing chromosome C34516 INFO [2014-03-08 06:13:38,184] [Preprocessor.java:241] [main] Processing chromosome C34546 Processing chromosome C34546 INFO [2014-03-08 06:13:38,201] [Preprocessor.java:241] [main] Processing chromosome C34550 Processing chromosome C34550 INFO [2014-03-08 06:13:38,234] [Preprocessor.java:241] [main] Processing chromosome C34552 Processing chromosome C34552 INFO [2014-03-08 06:13:38,265] [Preprocessor.java:241] [main] Processing chromosome C34556 Processing chromosome C34556 INFO [2014-03-08 06:13:38,279] [Preprocessor.java:241] [main] Processing chromosome C34562 Processing chromosome C34562 INFO [2014-03-08 06:13:38,288] [Preprocessor.java:241] [main] Processing chromosome C34564 Processing chromosome C34564 INFO [2014-03-08 06:13:38,299] [Preprocessor.java:241] [main] Processing chromosome C34566 Processing chromosome C34566 INFO [2014-03-08 06:13:38,306] [Preprocessor.java:241] [main] Processing chromosome C34600 Processing chromosome C34600 INFO [2014-03-08 06:13:38,345] [Preprocessor.java:241] [main] Processing chromosome C34622 Processing chromosome C34622 INFO [2014-03-08 06:13:38,366] [Preprocessor.java:241] [main] Processing chromosome C34630 Processing chromosome C34630 INFO [2014-03-08 06:13:38,410] [Preprocessor.java:241] [main] Processing chromosome C34634 Processing chromosome C34634 INFO [2014-03-08 06:13:38,416] [Preprocessor.java:241] [main] Processing chromosome C34636 Processing chromosome C34636 INFO [2014-03-08 06:13:38,427] [Preprocessor.java:241] [main] Processing chromosome C34708 Processing chromosome C34708 INFO [2014-03-08 06:13:38,440] [Preprocessor.java:241] [main] Processing chromosome C34712 Processing chromosome C34712 INFO [2014-03-08 06:13:38,500] [Preprocessor.java:241] [main] Processing chromosome C34726 Processing chromosome C34726 INFO [2014-03-08 06:13:38,515] [Preprocessor.java:241] [main] Processing chromosome C34792 Processing chromosome C34792 INFO [2014-03-08 06:13:38,532] [Preprocessor.java:241] [main] Processing chromosome C34798 Processing chromosome C34798 INFO [2014-03-08 06:13:38,562] [Preprocessor.java:241] [main] Processing chromosome C34804 Processing chromosome C34804 INFO [2014-03-08 06:13:38,569] [Preprocessor.java:241] [main] Processing chromosome C34846 Processing chromosome C34846 INFO [2014-03-08 06:13:38,573] [Preprocessor.java:241] [main] Processing chromosome C34856 Processing chromosome C34856 INFO [2014-03-08 06:13:38,586] [Preprocessor.java:241] [main] Processing chromosome C34876 Processing chromosome C34876 INFO [2014-03-08 06:13:38,597] [Preprocessor.java:241] [main] Processing chromosome C34884 Processing chromosome C34884 INFO [2014-03-08 06:13:38,611] [Preprocessor.java:241] [main] Processing chromosome C349 Processing chromosome C349 INFO [2014-03-08 06:13:38,665] [Preprocessor.java:241] [main] Processing chromosome C34902 Processing chromosome C34902 INFO [2014-03-08 06:13:38,683] [Preprocessor.java:241] [main] Processing chromosome C34948 Processing chromosome C34948 INFO [2014-03-08 06:13:38,712] [Preprocessor.java:241] [main] Processing chromosome C35006 Processing chromosome C35006 INFO [2014-03-08 06:13:38,740] [Preprocessor.java:241] [main] Processing chromosome C35028 Processing chromosome C35028 INFO [2014-03-08 06:13:38,759] [Preprocessor.java:241] [main] Processing chromosome C35042 Processing chromosome C35042 INFO [2014-03-08 06:13:38,783] [Preprocessor.java:241] [main] Processing chromosome C35068 Processing chromosome C35068 INFO [2014-03-08 06:13:38,794] [Preprocessor.java:241] [main] Processing chromosome C35134 Processing chromosome C35134 INFO [2014-03-08 06:13:38,802] [Preprocessor.java:241] [main] Processing chromosome C35160 Processing chromosome C35160 INFO [2014-03-08 06:13:38,807] [Preprocessor.java:241] [main] Processing chromosome C35168 Processing chromosome C35168 INFO [2014-03-08 06:13:38,849] [Preprocessor.java:241] [main] Processing chromosome C35172 Processing chromosome C35172 INFO [2014-03-08 06:13:38,879] [Preprocessor.java:241] [main] Processing chromosome C35260 Processing chromosome C35260 INFO [2014-03-08 06:13:38,902] [Preprocessor.java:241] [main] Processing chromosome C35262 Processing chromosome C35262 INFO [2014-03-08 06:13:38,965] [Preprocessor.java:241] [main] Processing chromosome C35282 Processing chromosome C35282 INFO [2014-03-08 06:13:38,992] [Preprocessor.java:241] [main] Processing chromosome C35386 Processing chromosome C35386 INFO [2014-03-08 06:13:39,013] [Preprocessor.java:241] [main] Processing chromosome C35400 Processing chromosome C35400 INFO [2014-03-08 06:13:39,054] [Preprocessor.java:241] [main] Processing chromosome C35502 Processing chromosome C35502 INFO [2014-03-08 06:13:39,058] [Preprocessor.java:241] [main] Processing chromosome C3553 Processing chromosome C3553 INFO [2014-03-08 06:13:39,116] [Preprocessor.java:241] [main] Processing chromosome C35532 Processing chromosome C35532 INFO [2014-03-08 06:13:39,130] [Preprocessor.java:241] [main] Processing chromosome C35548 Processing chromosome C35548 INFO [2014-03-08 06:13:39,159] [Preprocessor.java:241] [main] Processing chromosome C35556 Processing chromosome C35556 INFO [2014-03-08 06:13:39,210] [Preprocessor.java:241] [main] Processing chromosome C35564 Processing chromosome C35564 INFO [2014-03-08 06:13:39,223] [Preprocessor.java:241] [main] Processing chromosome C35606 Processing chromosome C35606 INFO [2014-03-08 06:13:39,228] [Preprocessor.java:241] [main] Processing chromosome C35642 Processing chromosome C35642 INFO [2014-03-08 06:13:39,232] [Preprocessor.java:241] [main] Processing chromosome C35646 Processing chromosome C35646 INFO [2014-03-08 06:13:39,261] [Preprocessor.java:241] [main] Processing chromosome C35716 Processing chromosome C35716 INFO [2014-03-08 06:13:39,275] [Preprocessor.java:241] [main] Processing chromosome C35760 Processing chromosome C35760 INFO [2014-03-08 06:13:39,290] [Preprocessor.java:241] [main] Processing chromosome C3577 Processing chromosome C3577 INFO [2014-03-08 06:13:39,352] [Preprocessor.java:241] [main] Processing chromosome C35776 Processing chromosome C35776 INFO [2014-03-08 06:13:39,393] [Preprocessor.java:241] [main] Processing chromosome C35786 Processing chromosome C35786 INFO [2014-03-08 06:13:39,410] [Preprocessor.java:241] [main] Processing chromosome C3579 Processing chromosome C3579 INFO [2014-03-08 06:13:39,440] [Preprocessor.java:241] [main] Processing chromosome C35794 Processing chromosome C35794 INFO [2014-03-08 06:13:39,485] [Preprocessor.java:241] [main] Processing chromosome C35840 Processing chromosome C35840 INFO [2014-03-08 06:13:39,494] [Preprocessor.java:241] [main] Processing chromosome C35844 Processing chromosome C35844 INFO [2014-03-08 06:13:39,528] [Preprocessor.java:241] [main] Processing chromosome C35952 Processing chromosome C35952 INFO [2014-03-08 06:13:39,541] [Preprocessor.java:241] [main] Processing chromosome C35992 Processing chromosome C35992 INFO [2014-03-08 06:13:39,576] [Preprocessor.java:241] [main] Processing chromosome C36014 Processing chromosome C36014 INFO [2014-03-08 06:13:39,600] [Preprocessor.java:241] [main] Processing chromosome C36028 Processing chromosome C36028 INFO [2014-03-08 06:13:39,617] [Preprocessor.java:241] [main] Processing chromosome C36038 Processing chromosome C36038 INFO [2014-03-08 06:13:39,635] [Preprocessor.java:241] [main] Processing chromosome C361 Processing chromosome C361 INFO [2014-03-08 06:13:39,667] [Preprocessor.java:241] [main] Processing chromosome C3611 Processing chromosome C3611 INFO [2014-03-08 06:13:39,718] [Preprocessor.java:241] [main] Processing chromosome C36172 Processing chromosome C36172 INFO [2014-03-08 06:13:39,771] [Preprocessor.java:241] [main] Processing chromosome C3627 Processing chromosome C3627 INFO [2014-03-08 06:13:39,827] [Preprocessor.java:241] [main] Processing chromosome C363 Processing chromosome C363 INFO [2014-03-08 06:13:39,903] [Preprocessor.java:241] [main] Processing chromosome C36322 Processing chromosome C36322 INFO [2014-03-08 06:13:39,943] [Preprocessor.java:241] [main] Processing chromosome C3645 Processing chromosome C3645 INFO [2014-03-08 06:13:39,997] [Preprocessor.java:241] [main] Processing chromosome C3647 Processing chromosome C3647 INFO [2014-03-08 06:13:40,054] [Preprocessor.java:241] [main] Processing chromosome C365 Processing chromosome C365 INFO [2014-03-08 06:13:40,086] [Preprocessor.java:241] [main] Processing chromosome C3655 Processing chromosome C3655 INFO [2014-03-08 06:13:40,140] [Preprocessor.java:241] [main] Processing chromosome C36636 Processing chromosome C36636 INFO [2014-03-08 06:13:40,206] [Preprocessor.java:241] [main] Processing chromosome C36680 Processing chromosome C36680 INFO [2014-03-08 06:13:40,237] [Preprocessor.java:241] [main] Processing chromosome C37024 Processing chromosome C37024 INFO [2014-03-08 06:13:40,311] [Preprocessor.java:241] [main] Processing chromosome C371 Processing chromosome C371 INFO [2014-03-08 06:13:40,367] [Preprocessor.java:241] [main] Processing chromosome C3721 Processing chromosome C3721 INFO [2014-03-08 06:13:40,397] [Preprocessor.java:241] [main] Processing chromosome C3725 Processing chromosome C3725 INFO [2014-03-08 06:13:40,446] [Preprocessor.java:241] [main] Processing chromosome C37392 Processing chromosome C37392 INFO [2014-03-08 06:13:40,538] [Preprocessor.java:241] [main] Processing chromosome C375 Processing chromosome C375 INFO [2014-03-08 06:13:40,593] [Preprocessor.java:241] [main] Processing chromosome C381 Processing chromosome C381 INFO [2014-03-08 06:13:40,625] [Preprocessor.java:241] [main] Processing chromosome C3823 Processing chromosome C3823 INFO [2014-03-08 06:13:40,680] [Preprocessor.java:241] [main] Processing chromosome C3835 Processing chromosome C3835 INFO [2014-03-08 06:13:40,762] [Preprocessor.java:241] [main] Processing chromosome C3847 Processing chromosome C3847 INFO [2014-03-08 06:13:40,825] [Preprocessor.java:241] [main] Processing chromosome C3851 Processing chromosome C3851 INFO [2014-03-08 06:13:40,879] [Preprocessor.java:241] [main] Processing chromosome C3863 Processing chromosome C3863 INFO [2014-03-08 06:13:40,933] [Preprocessor.java:241] [main] Processing chromosome C3873 Processing chromosome C3873 INFO [2014-03-08 06:13:40,967] [Preprocessor.java:241] [main] Processing chromosome C3911 Processing chromosome C3911 INFO [2014-03-08 06:13:41,063] [Preprocessor.java:241] [main] Processing chromosome C3915 Processing chromosome C3915 INFO [2014-03-08 06:13:41,126] [Preprocessor.java:241] [main] Processing chromosome C3965 Processing chromosome C3965 INFO [2014-03-08 06:13:41,178] [Preprocessor.java:241] [main] Processing chromosome C4017 Processing chromosome C4017 INFO [2014-03-08 06:13:41,262] [Preprocessor.java:241] [main] Processing chromosome C4021 Processing chromosome C4021 INFO [2014-03-08 06:13:41,296] [Preprocessor.java:241] [main] Processing chromosome C4031 Processing chromosome C4031 INFO [2014-03-08 06:13:41,348] [Preprocessor.java:241] [main] Processing chromosome C4037 Processing chromosome C4037 INFO [2014-03-08 06:13:41,433] [Preprocessor.java:241] [main] Processing chromosome C4057 Processing chromosome C4057 INFO [2014-03-08 06:13:41,466] [Preprocessor.java:241] [main] Processing chromosome C415 Processing chromosome C415 INFO [2014-03-08 06:13:41,516] [Preprocessor.java:241] [main] Processing chromosome C4237 Processing chromosome C4237 INFO [2014-03-08 06:13:41,567] [Preprocessor.java:241] [main] Processing chromosome C4243 Processing chromosome C4243 INFO [2014-03-08 06:13:41,684] [Preprocessor.java:241] [main] Processing chromosome C4261 Processing chromosome C4261 INFO [2014-03-08 06:13:41,715] [Preprocessor.java:241] [main] Processing chromosome C4287 Processing chromosome C4287 INFO [2014-03-08 06:13:41,766] [Preprocessor.java:241] [main] Processing chromosome C4291 Processing chromosome C4291 INFO [2014-03-08 06:13:41,845] [Preprocessor.java:241] [main] Processing chromosome C4305 Processing chromosome C4305 INFO [2014-03-08 06:13:41,903] [Preprocessor.java:241] [main] Processing chromosome C4315 Processing chromosome C4315 INFO [2014-03-08 06:13:41,965] [Preprocessor.java:241] [main] Processing chromosome C4323 Processing chromosome C4323 INFO [2014-03-08 06:13:41,996] [Preprocessor.java:241] [main] Processing chromosome C4331 Processing chromosome C4331 INFO [2014-03-08 06:13:42,046] [Preprocessor.java:241] [main] Processing chromosome C4333 Processing chromosome C4333 INFO [2014-03-08 06:13:42,097] [Preprocessor.java:241] [main] Processing chromosome C4417 Processing chromosome C4417 INFO [2014-03-08 06:13:42,211] [Preprocessor.java:241] [main] Processing chromosome C4425 Processing chromosome C4425 INFO [2014-03-08 06:13:42,273] [Preprocessor.java:241] [main] Processing chromosome C4429 Processing chromosome C4429 INFO [2014-03-08 06:13:42,334] [Preprocessor.java:241] [main] Processing chromosome C4431 Processing chromosome C4431 INFO [2014-03-08 06:13:42,399] [Preprocessor.java:241] [main] Processing chromosome C4433 Processing chromosome C4433 INFO [2014-03-08 06:13:42,436] [Preprocessor.java:241] [main] Processing chromosome C4449 Processing chromosome C4449 INFO [2014-03-08 06:13:42,519] [Preprocessor.java:241] [main] Processing chromosome C4465 Processing chromosome C4465 INFO [2014-03-08 06:13:42,550] [Preprocessor.java:241] [main] Processing chromosome C4517 Processing chromosome C4517 INFO [2014-03-08 06:13:42,621] [Preprocessor.java:241] [main] Processing chromosome C4535 Processing chromosome C4535 INFO [2014-03-08 06:13:42,765] [Preprocessor.java:241] [main] Processing chromosome C4671 Processing chromosome C4671 INFO [2014-03-08 06:13:42,801] [Preprocessor.java:241] [main] Processing chromosome C4689 Processing chromosome C4689 INFO [2014-03-08 06:13:42,853] [Preprocessor.java:241] [main] Processing chromosome C4695 Processing chromosome C4695 INFO [2014-03-08 06:13:42,929] [Preprocessor.java:241] [main] Processing chromosome C4697 Processing chromosome C4697 INFO [2014-03-08 06:13:42,961] [Preprocessor.java:241] [main] Processing chromosome C4701 Processing chromosome C4701 INFO [2014-03-08 06:13:43,012] [Preprocessor.java:241] [main] Processing chromosome C4705 Processing chromosome C4705 INFO [2014-03-08 06:13:43,096] [Preprocessor.java:241] [main] Processing chromosome C4729 Processing chromosome C4729 INFO [2014-03-08 06:13:43,155] [Preprocessor.java:241] [main] Processing chromosome C4759 Processing chromosome C4759 INFO [2014-03-08 06:13:43,214] [Preprocessor.java:241] [main] Processing chromosome C4769 Processing chromosome C4769 INFO [2014-03-08 06:13:43,293] [Preprocessor.java:241] [main] Processing chromosome C4773 Processing chromosome C4773 INFO [2014-03-08 06:13:43,343] [Preprocessor.java:241] [main] Processing chromosome C4867 Processing chromosome C4867 INFO [2014-03-08 06:13:43,401] [Preprocessor.java:241] [main] Processing chromosome C4873 Processing chromosome C4873 INFO [2014-03-08 06:13:43,458] [Preprocessor.java:241] [main] Processing chromosome C4875 Processing chromosome C4875 INFO [2014-03-08 06:13:43,489] [Preprocessor.java:241] [main] Processing chromosome C4883 Processing chromosome C4883 INFO [2014-03-08 06:13:43,568] [Preprocessor.java:241] [main] Processing chromosome C4893 Processing chromosome C4893 INFO [2014-03-08 06:13:43,600] [Preprocessor.java:241] [main] Processing chromosome C4901 Processing chromosome C4901 INFO [2014-03-08 06:13:43,651] [Preprocessor.java:241] [main] Processing chromosome C4907 Processing chromosome C4907 INFO [2014-03-08 06:13:43,723] [Preprocessor.java:241] [main] Processing chromosome C4955 Processing chromosome C4955 INFO [2014-03-08 06:13:43,788] [Preprocessor.java:241] [main] Processing chromosome C4969 Processing chromosome C4969 INFO [2014-03-08 06:13:43,819] [Preprocessor.java:241] [main] Processing chromosome C5077 Processing chromosome C5077 INFO [2014-03-08 06:13:43,891] [Preprocessor.java:241] [main] Processing chromosome C5105 Processing chromosome C5105 INFO [2014-03-08 06:13:43,922] [Preprocessor.java:241] [main] Processing chromosome C5135 Processing chromosome C5135 INFO [2014-03-08 06:13:43,997] [Preprocessor.java:241] [main] Processing chromosome C5149 Processing chromosome C5149 INFO [2014-03-08 06:13:44,030] [Preprocessor.java:241] [main] Processing chromosome C5169 Processing chromosome C5169 INFO [2014-03-08 06:13:44,108] [Preprocessor.java:241] [main] Processing chromosome C5183 Processing chromosome C5183 INFO [2014-03-08 06:13:44,164] [Preprocessor.java:241] [main] Processing chromosome C5187 Processing chromosome C5187 INFO [2014-03-08 06:13:44,252] [Preprocessor.java:241] [main] Processing chromosome C5189 Processing chromosome C5189 INFO [2014-03-08 06:13:44,331] [Preprocessor.java:241] [main] Processing chromosome C5201 Processing chromosome C5201 INFO [2014-03-08 06:13:44,390] [Preprocessor.java:241] [main] Processing chromosome C5203 Processing chromosome C5203 INFO [2014-03-08 06:13:44,443] [Preprocessor.java:241] [main] Processing chromosome C523 Processing chromosome C523 INFO [2014-03-08 06:13:44,473] [Preprocessor.java:241] [main] Processing chromosome C5325 Processing chromosome C5325 INFO [2014-03-08 06:13:44,545] [Preprocessor.java:241] [main] Processing chromosome C5333 Processing chromosome C5333 INFO [2014-03-08 06:13:44,602] [Preprocessor.java:241] [main] Processing chromosome C5335 Processing chromosome C5335 INFO [2014-03-08 06:13:44,634] [Preprocessor.java:241] [main] Processing chromosome C5363 Processing chromosome C5363 INFO [2014-03-08 06:13:44,684] [Preprocessor.java:241] [main] Processing chromosome C5405 Processing chromosome C5405 INFO [2014-03-08 06:13:44,821] [Preprocessor.java:241] [main] Processing chromosome C5411 Processing chromosome C5411 INFO [2014-03-08 06:13:44,877] [Preprocessor.java:241] [main] Processing chromosome C5423 Processing chromosome C5423 INFO [2014-03-08 06:13:44,940] [Preprocessor.java:241] [main] Processing chromosome C5429 Processing chromosome C5429 INFO [2014-03-08 06:13:44,972] [Preprocessor.java:241] [main] Processing chromosome C5445 Processing chromosome C5445 INFO [2014-03-08 06:13:45,051] [Preprocessor.java:241] [main] Processing chromosome C5545 Processing chromosome C5545 INFO [2014-03-08 06:13:45,108] [Preprocessor.java:241] [main] Processing chromosome C5557 Processing chromosome C5557 INFO [2014-03-08 06:13:45,177] [Preprocessor.java:241] [main] Processing chromosome C5565 Processing chromosome C5565 INFO [2014-03-08 06:13:45,232] [Preprocessor.java:241] [main] Processing chromosome C5567 Processing chromosome C5567 INFO [2014-03-08 06:13:45,318] [Preprocessor.java:241] [main] Processing chromosome C5573 Processing chromosome C5573 INFO [2014-03-08 06:13:45,369] [Preprocessor.java:241] [main] Processing chromosome C5593 Processing chromosome C5593 INFO [2014-03-08 06:13:45,452] [Preprocessor.java:241] [main] Processing chromosome C5607 Processing chromosome C5607 INFO [2014-03-08 06:13:45,505] [Preprocessor.java:241] [main] Processing chromosome C5657 Processing chromosome C5657 INFO [2014-03-08 06:13:45,558] [Preprocessor.java:241] [main] Processing chromosome C5677 Processing chromosome C5677 INFO [2014-03-08 06:13:45,588] [Preprocessor.java:241] [main] Processing chromosome C5679 Processing chromosome C5679 INFO [2014-03-08 06:13:45,666] [Preprocessor.java:241] [main] Processing chromosome C571 Processing chromosome C571 INFO [2014-03-08 06:13:45,698] [Preprocessor.java:241] [main] Processing chromosome C5771 Processing chromosome C5771 INFO [2014-03-08 06:13:45,772] [Preprocessor.java:241] [main] Processing chromosome C5775 Processing chromosome C5775 INFO [2014-03-08 06:13:45,845] [Preprocessor.java:241] [main] Processing chromosome C5777 Processing chromosome C5777 INFO [2014-03-08 06:13:45,899] [Preprocessor.java:241] [main] Processing chromosome C5785 Processing chromosome C5785 INFO [2014-03-08 06:13:45,931] [Preprocessor.java:241] [main] Processing chromosome C5819 Processing chromosome C5819 INFO [2014-03-08 06:13:46,007] [Preprocessor.java:241] [main] Processing chromosome C5827 Processing chromosome C5827 INFO [2014-03-08 06:13:46,038] [Preprocessor.java:241] [main] Processing chromosome C5847 Processing chromosome C5847 INFO [2014-03-08 06:13:46,116] [Preprocessor.java:241] [main] Processing chromosome C5853 Processing chromosome C5853 INFO [2014-03-08 06:13:46,173] [Preprocessor.java:241] [main] Processing chromosome C5877 Processing chromosome C5877 INFO [2014-03-08 06:13:46,204] [Preprocessor.java:241] [main] Processing chromosome C593 Processing chromosome C593 INFO [2014-03-08 06:13:46,315] [Preprocessor.java:241] [main] Processing chromosome C6015 Processing chromosome C6015 INFO [2014-03-08 06:13:46,378] [Preprocessor.java:241] [main] Processing chromosome C6041 Processing chromosome C6041 INFO [2014-03-08 06:13:46,411] [Preprocessor.java:241] [main] Processing chromosome C6057 Processing chromosome C6057 INFO [2014-03-08 06:13:46,461] [Preprocessor.java:241] [main] Processing chromosome C6067 Processing chromosome C6067 INFO [2014-03-08 06:13:46,510] [Preprocessor.java:241] [main] Processing chromosome C6107 Processing chromosome C6107 INFO [2014-03-08 06:13:46,587] [Preprocessor.java:241] [main] Processing chromosome C6117 Processing chromosome C6117 INFO [2014-03-08 06:13:46,640] [Preprocessor.java:241] [main] Processing chromosome C6123 Processing chromosome C6123 INFO [2014-03-08 06:13:46,671] [Preprocessor.java:241] [main] Processing chromosome C617 Processing chromosome C617 INFO [2014-03-08 06:13:46,721] [Preprocessor.java:241] [main] Processing chromosome C6187 Processing chromosome C6187 INFO [2014-03-08 06:13:46,775] [Preprocessor.java:241] [main] Processing chromosome C6207 Processing chromosome C6207 INFO [2014-03-08 06:13:46,825] [Preprocessor.java:241] [main] Processing chromosome C6215 Processing chromosome C6215 INFO [2014-03-08 06:13:46,898] [Preprocessor.java:241] [main] Processing chromosome C623 Processing chromosome C623 INFO [2014-03-08 06:13:46,952] [Preprocessor.java:241] [main] Processing chromosome C6265 Processing chromosome C6265 INFO [2014-03-08 06:13:47,017] [Preprocessor.java:241] [main] Processing chromosome C6269 Processing chromosome C6269 INFO [2014-03-08 06:13:47,049] [Preprocessor.java:241] [main] Processing chromosome C6275 Processing chromosome C6275 INFO [2014-03-08 06:13:47,134] [Preprocessor.java:241] [main] Processing chromosome C6277 Processing chromosome C6277 INFO [2014-03-08 06:13:47,163] [Preprocessor.java:241] [main] Processing chromosome C6283 Processing chromosome C6283 INFO [2014-03-08 06:13:47,244] [Preprocessor.java:241] [main] Processing chromosome C6337 Processing chromosome C6337 INFO [2014-03-08 06:13:47,324] [Preprocessor.java:241] [main] Processing chromosome C6363 Processing chromosome C6363 INFO [2014-03-08 06:13:47,354] [Preprocessor.java:241] [main] Processing chromosome C6369 Processing chromosome C6369 INFO [2014-03-08 06:13:47,407] [Preprocessor.java:241] [main] Processing chromosome C6379 Processing chromosome C6379 INFO [2014-03-08 06:13:47,427] [Preprocessor.java:241] [main] Processing chromosome C6381 Processing chromosome C6381 INFO [2014-03-08 06:13:47,459] [Preprocessor.java:241] [main] Processing chromosome C6383 Processing chromosome C6383 INFO [2014-03-08 06:13:47,491] [Preprocessor.java:241] [main] Processing chromosome C6387 Processing chromosome C6387 INFO [2014-03-08 06:13:47,538] [Preprocessor.java:241] [main] Processing chromosome C6399 Processing chromosome C6399 INFO [2014-03-08 06:13:47,576] [Preprocessor.java:241] [main] Processing chromosome C6401 Processing chromosome C6401 INFO [2014-03-08 06:13:47,619] [Preprocessor.java:241] [main] Processing chromosome C6441 Processing chromosome C6441 INFO [2014-03-08 06:13:47,661] [Preprocessor.java:241] [main] Processing chromosome C6459 Processing chromosome C6459 INFO [2014-03-08 06:13:47,723] [Preprocessor.java:241] [main] Processing chromosome C6563 Processing chromosome C6563 INFO [2014-03-08 06:13:47,742] [Preprocessor.java:241] [main] Processing chromosome C6589 Processing chromosome C6589 INFO [2014-03-08 06:13:47,789] [Preprocessor.java:241] [main] Processing chromosome C6599 Processing chromosome C6599 INFO [2014-03-08 06:13:47,824] [Preprocessor.java:241] [main] Processing chromosome C6601 Processing chromosome C6601 INFO [2014-03-08 06:13:47,864] [Preprocessor.java:241] [main] Processing chromosome C6625 Processing chromosome C6625 INFO [2014-03-08 06:13:47,897] [Preprocessor.java:241] [main] Processing chromosome C6637 Processing chromosome C6637 INFO [2014-03-08 06:13:47,931] [Preprocessor.java:241] [main] Processing chromosome C6643 Processing chromosome C6643 INFO [2014-03-08 06:13:47,951] [Preprocessor.java:241] [main] Processing chromosome C671 Processing chromosome C671 INFO [2014-03-08 06:13:48,017] [Preprocessor.java:241] [main] Processing chromosome C6727 Processing chromosome C6727 INFO [2014-03-08 06:13:48,036] [Preprocessor.java:241] [main] Processing chromosome C6735 Processing chromosome C6735 INFO [2014-03-08 06:13:48,095] [Preprocessor.java:241] [main] Processing chromosome C6759 Processing chromosome C6759 INFO [2014-03-08 06:13:48,115] [Preprocessor.java:241] [main] Processing chromosome C6787 Processing chromosome C6787 INFO [2014-03-08 06:13:48,161] [Preprocessor.java:241] [main] Processing chromosome C6807 Processing chromosome C6807 INFO [2014-03-08 06:13:48,212] [Preprocessor.java:241] [main] Processing chromosome C6811 Processing chromosome C6811 INFO [2014-03-08 06:13:48,247] [Preprocessor.java:241] [main] Processing chromosome C6841 Processing chromosome C6841 INFO [2014-03-08 06:13:48,267] [Preprocessor.java:241] [main] Processing chromosome C6911 Processing chromosome C6911 INFO [2014-03-08 06:13:48,313] [Preprocessor.java:241] [main] Processing chromosome C6927 Processing chromosome C6927 INFO [2014-03-08 06:13:48,353] [Preprocessor.java:241] [main] Processing chromosome C6933 Processing chromosome C6933 INFO [2014-03-08 06:13:48,393] [Preprocessor.java:241] [main] Processing chromosome C6937 Processing chromosome C6937 INFO [2014-03-08 06:13:48,416] [Preprocessor.java:241] [main] Processing chromosome C6965 Processing chromosome C6965 INFO [2014-03-08 06:13:48,447] [Preprocessor.java:241] [main] Processing chromosome C6989 Processing chromosome C6989 INFO [2014-03-08 06:13:48,480] [Preprocessor.java:241] [main] Processing chromosome C699 Processing chromosome C699 INFO [2014-03-08 06:13:48,543] [Preprocessor.java:241] [main] Processing chromosome C7003 Processing chromosome C7003 INFO [2014-03-08 06:13:48,582] [Preprocessor.java:241] [main] Processing chromosome C7015 Processing chromosome C7015 INFO [2014-03-08 06:13:48,602] [Preprocessor.java:241] [main] Processing chromosome C7019 Processing chromosome C7019 INFO [2014-03-08 06:13:48,666] [Preprocessor.java:241] [main] Processing chromosome C705 Processing chromosome C705 INFO [2014-03-08 06:13:48,717] [Preprocessor.java:241] [main] Processing chromosome C7083 Processing chromosome C7083 INFO [2014-03-08 06:13:48,755] [Preprocessor.java:241] [main] Processing chromosome C7095 Processing chromosome C7095 INFO [2014-03-08 06:13:48,797] [Preprocessor.java:241] [main] Processing chromosome C7115 Processing chromosome C7115 INFO [2014-03-08 06:13:48,817] [Preprocessor.java:241] [main] Processing chromosome C7141 Processing chromosome C7141 INFO [2014-03-08 06:13:48,874] [Preprocessor.java:241] [main] Processing chromosome C7145 Processing chromosome C7145 INFO [2014-03-08 06:13:48,917] [Preprocessor.java:241] [main] Processing chromosome C7147 Processing chromosome C7147 INFO [2014-03-08 06:13:48,959] [Preprocessor.java:241] [main] Processing chromosome C7257 Processing chromosome C7257 INFO [2014-03-08 06:13:48,979] [Preprocessor.java:241] [main] Processing chromosome C7277 Processing chromosome C7277 INFO [2014-03-08 06:13:49,028] [Preprocessor.java:241] [main] Processing chromosome C7283 Processing chromosome C7283 INFO [2014-03-08 06:13:49,049] [Preprocessor.java:241] [main] Processing chromosome C7303 Processing chromosome C7303 INFO [2014-03-08 06:13:49,095] [Preprocessor.java:241] [main] Processing chromosome C7307 Processing chromosome C7307 INFO [2014-03-08 06:13:49,160] [Preprocessor.java:241] [main] Processing chromosome C7327 Processing chromosome C7327 INFO [2014-03-08 06:13:49,196] [Preprocessor.java:241] [main] Processing chromosome C7333 Processing chromosome C7333 INFO [2014-03-08 06:13:49,242] [Preprocessor.java:241] [main] Processing chromosome C7343 Processing chromosome C7343 INFO [2014-03-08 06:13:49,261] [Preprocessor.java:241] [main] Processing chromosome C7453 Processing chromosome C7453 INFO [2014-03-08 06:13:49,307] [Preprocessor.java:241] [main] Processing chromosome C7457 Processing chromosome C7457 INFO [2014-03-08 06:13:49,326] [Preprocessor.java:241] [main] Processing chromosome C7473 Processing chromosome C7473 INFO [2014-03-08 06:13:49,372] [Preprocessor.java:241] [main] Processing chromosome C7499 Processing chromosome C7499 INFO [2014-03-08 06:13:49,410] [Preprocessor.java:241] [main] Processing chromosome C7511 Processing chromosome C7511 INFO [2014-03-08 06:13:49,425] [Preprocessor.java:241] [main] Processing chromosome C7531 Processing chromosome C7531 INFO [2014-03-08 06:13:49,454] [Preprocessor.java:241] [main] Processing chromosome C7621 Processing chromosome C7621 INFO [2014-03-08 06:13:49,504] [Preprocessor.java:241] [main] Processing chromosome C7639 Processing chromosome C7639 INFO [2014-03-08 06:13:49,524] [Preprocessor.java:241] [main] Processing chromosome C7659 Processing chromosome C7659 INFO [2014-03-08 06:13:49,555] [Preprocessor.java:241] [main] Processing chromosome C7661 Processing chromosome C7661 INFO [2014-03-08 06:13:49,603] [Preprocessor.java:241] [main] Processing chromosome C7785 Processing chromosome C7785 INFO [2014-03-08 06:13:49,623] [Preprocessor.java:241] [main] Processing chromosome C7787 Processing chromosome C7787 INFO [2014-03-08 06:13:49,666] [Preprocessor.java:241] [main] Processing chromosome C7791 Processing chromosome C7791 INFO [2014-03-08 06:13:49,720] [Preprocessor.java:241] [main] Processing chromosome C7793 Processing chromosome C7793 INFO [2014-03-08 06:13:49,739] [Preprocessor.java:241] [main] Processing chromosome C7797 Processing chromosome C7797 INFO [2014-03-08 06:13:49,772] [Preprocessor.java:241] [main] Processing chromosome C7799 Processing chromosome C7799 INFO [2014-03-08 06:13:49,804] [Preprocessor.java:241] [main] Processing chromosome C7811 Processing chromosome C7811 INFO [2014-03-08 06:13:49,835] [Preprocessor.java:241] [main] Processing chromosome C7845 Processing chromosome C7845 INFO [2014-03-08 06:13:49,867] [Preprocessor.java:241] [main] Processing chromosome C785 Processing chromosome C785 INFO [2014-03-08 06:13:49,910] [Preprocessor.java:241] [main] Processing chromosome C7855 Processing chromosome C7855 INFO [2014-03-08 06:13:49,971] [Preprocessor.java:241] [main] Processing chromosome C7875 Processing chromosome C7875 INFO [2014-03-08 06:13:50,005] [Preprocessor.java:241] [main] Processing chromosome C7891 Processing chromosome C7891 INFO [2014-03-08 06:13:50,038] [Preprocessor.java:241] [main] Processing chromosome C7899 Processing chromosome C7899 INFO [2014-03-08 06:13:50,057] [Preprocessor.java:241] [main] Processing chromosome C7993 Processing chromosome C7993 INFO [2014-03-08 06:13:50,090] [Preprocessor.java:241] [main] Processing chromosome C7999 Processing chromosome C7999 INFO [2014-03-08 06:13:50,164] [Preprocessor.java:241] [main] Processing chromosome C8003 Processing chromosome C8003 INFO [2014-03-08 06:13:50,199] [Preprocessor.java:241] [main] Processing chromosome C8005 Processing chromosome C8005 INFO [2014-03-08 06:13:50,243] [Preprocessor.java:241] [main] Processing chromosome C8031 Processing chromosome C8031 INFO [2014-03-08 06:13:50,280] [Preprocessor.java:241] [main] Processing chromosome C8037 Processing chromosome C8037 INFO [2014-03-08 06:13:50,299] [Preprocessor.java:241] [main] Processing chromosome C807 Processing chromosome C807 INFO [2014-03-08 06:13:50,364] [Preprocessor.java:241] [main] Processing chromosome C8113 Processing chromosome C8113 INFO [2014-03-08 06:13:50,405] [Preprocessor.java:241] [main] Processing chromosome C8125 Processing chromosome C8125 INFO [2014-03-08 06:13:50,438] [Preprocessor.java:241] [main] Processing chromosome C8133 Processing chromosome C8133 INFO [2014-03-08 06:13:50,457] [Preprocessor.java:241] [main] Processing chromosome C8153 Processing chromosome C8153 INFO [2014-03-08 06:13:50,511] [Preprocessor.java:241] [main] Processing chromosome C8159 Processing chromosome C8159 INFO [2014-03-08 06:13:50,543] [Preprocessor.java:241] [main] Processing chromosome C8167 Processing chromosome C8167 INFO [2014-03-08 06:13:50,563] [Preprocessor.java:241] [main] Processing chromosome C8177 Processing chromosome C8177 INFO [2014-03-08 06:13:50,595] [Preprocessor.java:241] [main] Processing chromosome C8205 Processing chromosome C8205 INFO [2014-03-08 06:13:50,633] [Preprocessor.java:241] [main] Processing chromosome C8231 Processing chromosome C8231 INFO [2014-03-08 06:13:50,679] [Preprocessor.java:241] [main] Processing chromosome C827 Processing chromosome C827 INFO [2014-03-08 06:13:50,710] [Preprocessor.java:241] [main] Processing chromosome C8281 Processing chromosome C8281 INFO [2014-03-08 06:13:50,780] [Preprocessor.java:241] [main] Processing chromosome C8283 Processing chromosome C8283 INFO [2014-03-08 06:13:50,832] [Preprocessor.java:241] [main] Processing chromosome C8293 Processing chromosome C8293 INFO [2014-03-08 06:13:50,872] [Preprocessor.java:241] [main] Processing chromosome C8303 Processing chromosome C8303 INFO [2014-03-08 06:13:50,912] [Preprocessor.java:241] [main] Processing chromosome C8315 Processing chromosome C8315 INFO [2014-03-08 06:13:50,958] [Preprocessor.java:241] [main] Processing chromosome C8339 Processing chromosome C8339 INFO [2014-03-08 06:13:50,994] [Preprocessor.java:241] [main] Processing chromosome C8363 Processing chromosome C8363 INFO [2014-03-08 06:13:51,030] [Preprocessor.java:241] [main] Processing chromosome C8365 Processing chromosome C8365 INFO [2014-03-08 06:13:51,071] [Preprocessor.java:241] [main] Processing chromosome C8377 Processing chromosome C8377 INFO [2014-03-08 06:13:51,145] [Preprocessor.java:241] [main] Processing chromosome C8379 Processing chromosome C8379 INFO [2014-03-08 06:13:51,176] [Preprocessor.java:241] [main] Processing chromosome C8383 Processing chromosome C8383 INFO [2014-03-08 06:13:51,197] [Preprocessor.java:241] [main] Processing chromosome C8393 Processing chromosome C8393 INFO [2014-03-08 06:13:51,228] [Preprocessor.java:241] [main] Processing chromosome C8433 Processing chromosome C8433 INFO [2014-03-08 06:13:51,260] [Preprocessor.java:241] [main] Processing chromosome C8461 Processing chromosome C8461 INFO [2014-03-08 06:13:51,292] [Preprocessor.java:241] [main] Processing chromosome C8465 Processing chromosome C8465 INFO [2014-03-08 06:13:51,324] [Preprocessor.java:241] [main] Processing chromosome C8485 Processing chromosome C8485 INFO [2014-03-08 06:13:51,381] [Preprocessor.java:241] [main] Processing chromosome C8503 Processing chromosome C8503 INFO [2014-03-08 06:13:51,403] [Preprocessor.java:241] [main] Processing chromosome C8513 Processing chromosome C8513 INFO [2014-03-08 06:13:51,447] [Preprocessor.java:241] [main] Processing chromosome C8517 Processing chromosome C8517 INFO [2014-03-08 06:13:51,466] [Preprocessor.java:241] [main] Processing chromosome C8519 Processing chromosome C8519 INFO [2014-03-08 06:13:51,518] [Preprocessor.java:241] [main] Processing chromosome C8563 Processing chromosome C8563 INFO [2014-03-08 06:13:51,538] [Preprocessor.java:241] [main] Processing chromosome C8569 Processing chromosome C8569 INFO [2014-03-08 06:13:51,569] [Preprocessor.java:241] [main] Processing chromosome C8575 Processing chromosome C8575 INFO [2014-03-08 06:13:51,652] [Preprocessor.java:241] [main] Processing chromosome C8585 Processing chromosome C8585 INFO [2014-03-08 06:13:51,693] [Preprocessor.java:241] [main] Processing chromosome C859 Processing chromosome C859 INFO [2014-03-08 06:13:51,751] [Preprocessor.java:241] [main] Processing chromosome C8591 Processing chromosome C8591 INFO [2014-03-08 06:13:51,773] [Preprocessor.java:241] [main] Processing chromosome C8599 Processing chromosome C8599 INFO [2014-03-08 06:13:51,826] [Preprocessor.java:241] [main] Processing chromosome C8601 Processing chromosome C8601 INFO [2014-03-08 06:13:51,849] [Preprocessor.java:241] [main] Processing chromosome C8605 Processing chromosome C8605 INFO [2014-03-08 06:13:51,881] [Preprocessor.java:241] [main] Processing chromosome C8665 Processing chromosome C8665 INFO [2014-03-08 06:13:51,941] [Preprocessor.java:241] [main] Processing chromosome C8671 Processing chromosome C8671 INFO [2014-03-08 06:13:51,988] [Preprocessor.java:241] [main] Processing chromosome C8695 Processing chromosome C8695 INFO [2014-03-08 06:13:52,009] [Preprocessor.java:241] [main] Processing chromosome C8739 Processing chromosome C8739 INFO [2014-03-08 06:13:52,045] [Preprocessor.java:241] [main] Processing chromosome C8751 Processing chromosome C8751 INFO [2014-03-08 06:13:52,095] [Preprocessor.java:241] [main] Processing chromosome C8757 Processing chromosome C8757 INFO [2014-03-08 06:13:52,154] [Preprocessor.java:241] [main] Processing chromosome C8767 Processing chromosome C8767 INFO [2014-03-08 06:13:52,197] [Preprocessor.java:241] [main] Processing chromosome C8771 Processing chromosome C8771 INFO [2014-03-08 06:13:52,217] [Preprocessor.java:241] [main] Processing chromosome C8793 Processing chromosome C8793 INFO [2014-03-08 06:13:52,273] [Preprocessor.java:241] [main] Processing chromosome C881 Processing chromosome C881 INFO [2014-03-08 06:13:52,305] [Preprocessor.java:241] [main] Processing chromosome C8843 Processing chromosome C8843 INFO [2014-03-08 06:13:52,368] [Preprocessor.java:241] [main] Processing chromosome C8845 Processing chromosome C8845 INFO [2014-03-08 06:13:52,414] [Preprocessor.java:241] [main] Processing chromosome C8855 Processing chromosome C8855 INFO [2014-03-08 06:13:52,449] [Preprocessor.java:241] [main] Processing chromosome C8887 Processing chromosome C8887 INFO [2014-03-08 06:13:52,498] [Preprocessor.java:241] [main] Processing chromosome C8891 Processing chromosome C8891 INFO [2014-03-08 06:13:52,543] [Preprocessor.java:241] [main] Processing chromosome C89 Processing chromosome C89 INFO [2014-03-08 06:13:52,598] [Preprocessor.java:241] [main] Processing chromosome C8905 Processing chromosome C8905 INFO [2014-03-08 06:13:52,617] [Preprocessor.java:241] [main] Processing chromosome C8907 Processing chromosome C8907 INFO [2014-03-08 06:13:52,685] [Preprocessor.java:241] [main] Processing chromosome C897 Processing chromosome C897 INFO [2014-03-08 06:13:52,743] [Preprocessor.java:241] [main] Processing chromosome C8987 Processing chromosome C8987 INFO [2014-03-08 06:13:52,794] [Preprocessor.java:241] [main] Processing chromosome C9001 Processing chromosome C9001 INFO [2014-03-08 06:13:52,813] [Preprocessor.java:241] [main] Processing chromosome C901 Processing chromosome C901 INFO [2014-03-08 06:13:52,881] [Preprocessor.java:241] [main] Processing chromosome C9013 Processing chromosome C9013 INFO [2014-03-08 06:13:52,924] [Preprocessor.java:241] [main] Processing chromosome C9015 Processing chromosome C9015 INFO [2014-03-08 06:13:52,970] [Preprocessor.java:241] [main] Processing chromosome C9019 Processing chromosome C9019 INFO [2014-03-08 06:13:53,011] [Preprocessor.java:241] [main] Processing chromosome C9023 Processing chromosome C9023 INFO [2014-03-08 06:13:53,056] [Preprocessor.java:241] [main] Processing chromosome C9065 Processing chromosome C9065 INFO [2014-03-08 06:13:53,076] [Preprocessor.java:241] [main] Processing chromosome C9069 Processing chromosome C9069 INFO [2014-03-08 06:13:53,120] [Preprocessor.java:241] [main] Processing chromosome C9097 Processing chromosome C9097 INFO [2014-03-08 06:13:53,139] [Preprocessor.java:241] [main] Processing chromosome C91 Processing chromosome C91 INFO [2014-03-08 06:13:53,216] [Preprocessor.java:241] [main] Processing chromosome C9117 Processing chromosome C9117 INFO [2014-03-08 06:13:53,256] [Preprocessor.java:241] [main] Processing chromosome C913 Processing chromosome C913 INFO [2014-03-08 06:13:53,321] [Preprocessor.java:241] [main] Processing chromosome C915 Processing chromosome C915 INFO [2014-03-08 06:13:53,352] [Preprocessor.java:241] [main] Processing chromosome C9161 Processing chromosome C9161 INFO [2014-03-08 06:13:53,392] [Preprocessor.java:241] [main] Processing chromosome C9191 Processing chromosome C9191 INFO [2014-03-08 06:13:53,443] [Preprocessor.java:241] [main] Processing chromosome C9255 Processing chromosome C9255 INFO [2014-03-08 06:13:53,490] [Preprocessor.java:241] [main] Processing chromosome C9265 Processing chromosome C9265 INFO [2014-03-08 06:13:53,526] [Preprocessor.java:241] [main] Processing chromosome C9271 Processing chromosome C9271 INFO [2014-03-08 06:13:53,573] [Preprocessor.java:241] [main] Processing chromosome C9273 Processing chromosome C9273 INFO [2014-03-08 06:13:53,609] [Preprocessor.java:241] [main] Processing chromosome C9287 Processing chromosome C9287 INFO [2014-03-08 06:13:53,656] [Preprocessor.java:241] [main] Processing chromosome C9293 Processing chromosome C9293 INFO [2014-03-08 06:13:53,710] [Preprocessor.java:241] [main] Processing chromosome C9297 Processing chromosome C9297 INFO [2014-03-08 06:13:53,759] [Preprocessor.java:241] [main] Processing chromosome C9301 Processing chromosome C9301 INFO [2014-03-08 06:13:53,791] [Preprocessor.java:241] [main] Processing chromosome C9303 Processing chromosome C9303 INFO [2014-03-08 06:13:53,830] [Preprocessor.java:241] [main] Processing chromosome C9305 Processing chromosome C9305 INFO [2014-03-08 06:13:53,877] [Preprocessor.java:241] [main] Processing chromosome C9311 Processing chromosome C9311 INFO [2014-03-08 06:13:53,897] [Preprocessor.java:241] [main] Processing chromosome C9317 Processing chromosome C9317 INFO [2014-03-08 06:13:53,951] [Preprocessor.java:241] [main] Processing chromosome C9319 Processing chromosome C9319 INFO [2014-03-08 06:13:53,986] [Preprocessor.java:241] [main] Processing chromosome C937 Processing chromosome C937 INFO [2014-03-08 06:13:54,017] [Preprocessor.java:241] [main] Processing chromosome C9375 Processing chromosome C9375 INFO [2014-03-08 06:13:54,057] [Preprocessor.java:241] [main] Processing chromosome C9381 Processing chromosome C9381 INFO [2014-03-08 06:13:54,103] [Preprocessor.java:241] [main] Processing chromosome C9383 Processing chromosome C9383 INFO [2014-03-08 06:13:54,141] [Preprocessor.java:241] [main] Processing chromosome C9389 Processing chromosome C9389 INFO [2014-03-08 06:13:54,187] [Preprocessor.java:241] [main] Processing chromosome C9391 Processing chromosome C9391 INFO [2014-03-08 06:13:54,206] [Preprocessor.java:241] [main] Processing chromosome C9401 Processing chromosome C9401 INFO [2014-03-08 06:13:54,253] [Preprocessor.java:241] [main] Processing chromosome C9405 Processing chromosome C9405 INFO [2014-03-08 06:13:54,272] [Preprocessor.java:241] [main] Processing chromosome C9407 Processing chromosome C9407 INFO [2014-03-08 06:13:54,303] [Preprocessor.java:241] [main] Processing chromosome C9417 Processing chromosome C9417 INFO [2014-03-08 06:13:54,355] [Preprocessor.java:241] [main] Processing chromosome C9437 Processing chromosome C9437 INFO [2014-03-08 06:13:54,392] [Preprocessor.java:241] [main] Processing chromosome C947 Processing chromosome C947 INFO [2014-03-08 06:13:54,422] [Preprocessor.java:241] [main] Processing chromosome C9481 Processing chromosome C9481 INFO [2014-03-08 06:13:54,487] [Preprocessor.java:241] [main] Processing chromosome C9483 Processing chromosome C9483 INFO [2014-03-08 06:13:54,509] [Preprocessor.java:241] [main] Processing chromosome C9485 Processing chromosome C9485 INFO [2014-03-08 06:13:54,569] [Preprocessor.java:241] [main] Processing chromosome C9497 Processing chromosome C9497 INFO [2014-03-08 06:13:54,589] [Preprocessor.java:241] [main] Processing chromosome C9509 Processing chromosome C9509 INFO [2014-03-08 06:13:54,652] [Preprocessor.java:241] [main] Processing chromosome C9515 Processing chromosome C9515 INFO [2014-03-08 06:13:54,695] [Preprocessor.java:241] [main] Processing chromosome C9521 Processing chromosome C9521 INFO [2014-03-08 06:13:54,733] [Preprocessor.java:241] [main] Processing chromosome C9531 Processing chromosome C9531 INFO [2014-03-08 06:13:54,754] [Preprocessor.java:241] [main] Processing chromosome C9565 Processing chromosome C9565 INFO [2014-03-08 06:13:54,807] [Preprocessor.java:241] [main] Processing chromosome C9569 Processing chromosome C9569 INFO [2014-03-08 06:13:54,856] [Preprocessor.java:241] [main] Processing chromosome C9585 Processing chromosome C9585 INFO [2014-03-08 06:13:54,905] [Preprocessor.java:241] [main] Processing chromosome C9589 Processing chromosome C9589 INFO [2014-03-08 06:13:54,950] [Preprocessor.java:241] [main] Processing chromosome C9609 Processing chromosome C9609 INFO [2014-03-08 06:13:54,992] [Preprocessor.java:241] [main] Processing chromosome C9651 Processing chromosome C9651 INFO [2014-03-08 06:13:55,028] [Preprocessor.java:241] [main] Processing chromosome C9661 Processing chromosome C9661 INFO [2014-03-08 06:13:55,072] [Preprocessor.java:241] [main] Processing chromosome C9663 Processing chromosome C9663 INFO [2014-03-08 06:13:55,116] [Preprocessor.java:241] [main] Processing chromosome C9667 Processing chromosome C9667 INFO [2014-03-08 06:13:55,150] [Preprocessor.java:241] [main] Processing chromosome C9671 Processing chromosome C9671 INFO [2014-03-08 06:13:55,211] [Preprocessor.java:241] [main] Processing chromosome C9691 Processing chromosome C9691 INFO [2014-03-08 06:13:55,260] [Preprocessor.java:241] [main] Processing chromosome C9751 Processing chromosome C9751 INFO [2014-03-08 06:13:55,309] [Preprocessor.java:241] [main] Processing chromosome C9761 Processing chromosome C9761 INFO [2014-03-08 06:13:55,349] [Preprocessor.java:241] [main] Processing chromosome C9793 Processing chromosome C9793 INFO [2014-03-08 06:13:55,368] [Preprocessor.java:241] [main] Processing chromosome C9795 Processing chromosome C9795 INFO [2014-03-08 06:13:55,399] [Preprocessor.java:241] [main] Processing chromosome C9809 Processing chromosome C9809 INFO [2014-03-08 06:13:55,430] [Preprocessor.java:241] [main] Processing chromosome C9815 Processing chromosome C9815 INFO [2014-03-08 06:13:55,485] [Preprocessor.java:241] [main] Processing chromosome C9823 Processing chromosome C9823 INFO [2014-03-08 06:13:55,528] [Preprocessor.java:241] [main] Processing chromosome C9835 Processing chromosome C9835 INFO [2014-03-08 06:13:55,548] [Preprocessor.java:241] [main] Processing chromosome C9879 Processing chromosome C9879 INFO [2014-03-08 06:13:55,599] [Preprocessor.java:241] [main] Processing chromosome C9917 Processing chromosome C9917 INFO [2014-03-08 06:13:55,654] [Preprocessor.java:241] [main] Processing chromosome C9947 Processing chromosome C9947 INFO [2014-03-08 06:13:55,699] [Preprocessor.java:241] [main] Processing chromosome C9949 Processing chromosome C9949 INFO [2014-03-08 06:13:55,736] [Preprocessor.java:241] [main] Processing chromosome C9951 Processing chromosome C9951 INFO [2014-03-08 06:13:55,787] [Preprocessor.java:241] [main] Processing chromosome C9963 Processing chromosome C9963 INFO [2014-03-08 06:13:55,821] [Preprocessor.java:241] [main] Processing chromosome C9971 Processing chromosome C9971 INFO [2014-03-08 06:13:55,842] [Preprocessor.java:241] [main] Processing chromosome scaffold1 Processing chromosome scaffold1 INFO [2014-03-08 06:13:55,880] [Preprocessor.java:241] [main] Processing chromosome scaffold10 Processing chromosome scaffold10 INFO [2014-03-08 06:13:55,936] [Preprocessor.java:241] [main] Processing chromosome scaffold100 Processing chromosome scaffold100 INFO [2014-03-08 06:13:56,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1000 Processing chromosome scaffold1000 INFO [2014-03-08 06:13:56,224] [Preprocessor.java:241] [main] Processing chromosome scaffold1001 Processing chromosome scaffold1001 INFO [2014-03-08 06:13:56,283] [Preprocessor.java:241] [main] Processing chromosome scaffold1002 Processing chromosome scaffold1002 INFO [2014-03-08 06:13:56,312] [Preprocessor.java:241] [main] Processing chromosome scaffold1004 Processing chromosome scaffold1004 INFO [2014-03-08 06:13:56,421] [Preprocessor.java:241] [main] Processing chromosome scaffold1005 Processing chromosome scaffold1005 INFO [2014-03-08 06:13:56,434] [Preprocessor.java:241] [main] Processing chromosome scaffold1006 Processing chromosome scaffold1006 INFO [2014-03-08 06:13:56,444] [Preprocessor.java:241] [main] Processing chromosome scaffold1008 Processing chromosome scaffold1008 INFO [2014-03-08 06:13:56,449] [Preprocessor.java:241] [main] Processing chromosome scaffold1009 Processing chromosome scaffold1009 .INFO [2014-03-08 06:13:56,755] [Preprocessor.java:241] [main] Processing chromosome scaffold101 Processing chromosome scaffold101 INFO [2014-03-08 06:13:56,862] [Preprocessor.java:241] [main] Processing chromosome scaffold1010 Processing chromosome scaffold1010 INFO [2014-03-08 06:13:56,901] [Preprocessor.java:241] [main] Processing chromosome scaffold1011 Processing chromosome scaffold1011 INFO [2014-03-08 06:13:56,912] [Preprocessor.java:241] [main] Processing chromosome scaffold1014 Processing chromosome scaffold1014 INFO [2014-03-08 06:13:57,019] [Preprocessor.java:241] [main] Processing chromosome scaffold1016 Processing chromosome scaffold1016 INFO [2014-03-08 06:13:57,065] [Preprocessor.java:241] [main] Processing chromosome scaffold1017 Processing chromosome scaffold1017 INFO [2014-03-08 06:13:57,392] [Preprocessor.java:241] [main] Processing chromosome scaffold1018 Processing chromosome scaffold1018 INFO [2014-03-08 06:13:57,505] [Preprocessor.java:241] [main] Processing chromosome scaffold102 Processing chromosome scaffold102 INFO [2014-03-08 06:13:57,838] [Preprocessor.java:241] [main] Processing chromosome scaffold1020 Processing chromosome scaffold1020 INFO [2014-03-08 06:13:57,868] [Preprocessor.java:241] [main] Processing chromosome scaffold1021 Processing chromosome scaffold1021 INFO [2014-03-08 06:13:57,975] [Preprocessor.java:241] [main] Processing chromosome scaffold1022 Processing chromosome scaffold1022 INFO [2014-03-08 06:13:57,984] [Preprocessor.java:241] [main] Processing chromosome scaffold1024 Processing chromosome scaffold1024 INFO [2014-03-08 06:13:58,257] [Preprocessor.java:241] [main] Processing chromosome scaffold1026 Processing chromosome scaffold1026 INFO [2014-03-08 06:13:58,277] [Preprocessor.java:241] [main] Processing chromosome scaffold1027 Processing chromosome scaffold1027 INFO [2014-03-08 06:13:58,331] [Preprocessor.java:241] [main] Processing chromosome scaffold1028 Processing chromosome scaffold1028 INFO [2014-03-08 06:13:58,394] [Preprocessor.java:241] [main] Processing chromosome scaffold1029 Processing chromosome scaffold1029 INFO [2014-03-08 06:13:58,405] [Preprocessor.java:241] [main] Processing chromosome scaffold103 Processing chromosome scaffold103 INFO [2014-03-08 06:13:58,419] [Preprocessor.java:241] [main] Processing chromosome scaffold1030 Processing chromosome scaffold1030 INFO [2014-03-08 06:13:58,439] [Preprocessor.java:241] [main] Processing chromosome scaffold1031 Processing chromosome scaffold1031 INFO [2014-03-08 06:13:58,577] [Preprocessor.java:241] [main] Processing chromosome scaffold1032 Processing chromosome scaffold1032 INFO [2014-03-08 06:13:58,804] [Preprocessor.java:241] [main] Processing chromosome scaffold1033 Processing chromosome scaffold1033 INFO [2014-03-08 06:13:58,835] [Preprocessor.java:241] [main] Processing chromosome scaffold1034 Processing chromosome scaffold1034 INFO [2014-03-08 06:13:58,856] [Preprocessor.java:241] [main] Processing chromosome scaffold1035 Processing chromosome scaffold1035 INFO [2014-03-08 06:13:58,897] [Preprocessor.java:241] [main] Processing chromosome scaffold1036 Processing chromosome scaffold1036 INFO [2014-03-08 06:13:58,983] [Preprocessor.java:241] [main] Processing chromosome scaffold1037 Processing chromosome scaffold1037 INFO [2014-03-08 06:13:59,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1038 Processing chromosome scaffold1038 INFO [2014-03-08 06:13:59,181] [Preprocessor.java:241] [main] Processing chromosome scaffold1039 Processing chromosome scaffold1039 INFO [2014-03-08 06:13:59,193] [Preprocessor.java:241] [main] Processing chromosome scaffold104 Processing chromosome scaffold104 INFO [2014-03-08 06:13:59,197] [Preprocessor.java:241] [main] Processing chromosome scaffold1041 Processing chromosome scaffold1041 .INFO [2014-03-08 06:13:59,286] [Preprocessor.java:241] [main] Processing chromosome scaffold1042 Processing chromosome scaffold1042 INFO [2014-03-08 06:13:59,308] [Preprocessor.java:241] [main] Processing chromosome scaffold1043 Processing chromosome scaffold1043 INFO [2014-03-08 06:13:59,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1044 Processing chromosome scaffold1044 INFO [2014-03-08 06:13:59,346] [Preprocessor.java:241] [main] Processing chromosome scaffold1045 Processing chromosome scaffold1045 INFO [2014-03-08 06:13:59,372] [Preprocessor.java:241] [main] Processing chromosome scaffold1047 Processing chromosome scaffold1047 INFO [2014-03-08 06:13:59,382] [Preprocessor.java:241] [main] Processing chromosome scaffold1048 Processing chromosome scaffold1048 INFO [2014-03-08 06:13:59,389] [Preprocessor.java:241] [main] Processing chromosome scaffold105 Processing chromosome scaffold105 INFO [2014-03-08 06:13:59,502] [Preprocessor.java:241] [main] Processing chromosome scaffold1050 Processing chromosome scaffold1050 INFO [2014-03-08 06:13:59,588] [Preprocessor.java:241] [main] Processing chromosome scaffold1051 Processing chromosome scaffold1051 INFO [2014-03-08 06:13:59,628] [Preprocessor.java:241] [main] Processing chromosome scaffold1052 Processing chromosome scaffold1052 INFO [2014-03-08 06:13:59,699] [Preprocessor.java:241] [main] Processing chromosome scaffold1053 Processing chromosome scaffold1053 INFO [2014-03-08 06:13:59,751] [Preprocessor.java:241] [main] Processing chromosome scaffold1054 Processing chromosome scaffold1054 INFO [2014-03-08 06:13:59,807] [Preprocessor.java:241] [main] Processing chromosome scaffold1055 Processing chromosome scaffold1055 INFO [2014-03-08 06:13:59,813] [Preprocessor.java:241] [main] Processing chromosome scaffold1056 Processing chromosome scaffold1056 INFO [2014-03-08 06:13:59,898] [Preprocessor.java:241] [main] Processing chromosome scaffold1057 Processing chromosome scaffold1057 INFO [2014-03-08 06:13:59,904] [Preprocessor.java:241] [main] Processing chromosome scaffold1058 Processing chromosome scaffold1058 INFO [2014-03-08 06:13:59,931] [Preprocessor.java:241] [main] Processing chromosome scaffold106 Processing chromosome scaffold106 INFO [2014-03-08 06:14:00,054] [Preprocessor.java:241] [main] Processing chromosome scaffold1061 Processing chromosome scaffold1061 INFO [2014-03-08 06:14:00,149] [Preprocessor.java:241] [main] Processing chromosome scaffold1062 Processing chromosome scaffold1062 INFO [2014-03-08 06:14:00,170] [Preprocessor.java:241] [main] Processing chromosome scaffold1064 Processing chromosome scaffold1064 INFO [2014-03-08 06:14:00,239] [Preprocessor.java:241] [main] Processing chromosome scaffold1066 Processing chromosome scaffold1066 INFO [2014-03-08 06:14:00,278] [Preprocessor.java:241] [main] Processing chromosome scaffold1067 Processing chromosome scaffold1067 INFO [2014-03-08 06:14:00,307] [Preprocessor.java:241] [main] Processing chromosome scaffold1068 Processing chromosome scaffold1068 INFO [2014-03-08 06:14:00,310] [Preprocessor.java:241] [main] Processing chromosome scaffold1069 Processing chromosome scaffold1069 INFO [2014-03-08 06:14:00,314] [Preprocessor.java:241] [main] Processing chromosome scaffold107 Processing chromosome scaffold107 INFO [2014-03-08 06:14:00,414] [Preprocessor.java:241] [main] Processing chromosome scaffold1070 Processing chromosome scaffold1070 INFO [2014-03-08 06:14:00,474] [Preprocessor.java:241] [main] Processing chromosome scaffold1072 Processing chromosome scaffold1072 INFO [2014-03-08 06:14:00,490] [Preprocessor.java:241] [main] Processing chromosome scaffold1073 Processing chromosome scaffold1073 INFO [2014-03-08 06:14:00,531] [Preprocessor.java:241] [main] Processing chromosome scaffold1074 Processing chromosome scaffold1074 INFO [2014-03-08 06:14:00,539] [Preprocessor.java:241] [main] Processing chromosome scaffold1075 Processing chromosome scaffold1075 INFO [2014-03-08 06:14:00,560] [Preprocessor.java:241] [main] Processing chromosome scaffold1077 Processing chromosome scaffold1077 INFO [2014-03-08 06:14:00,618] [Preprocessor.java:241] [main] Processing chromosome scaffold1078 Processing chromosome scaffold1078 INFO [2014-03-08 06:14:00,644] [Preprocessor.java:241] [main] Processing chromosome scaffold1080 Processing chromosome scaffold1080 INFO [2014-03-08 06:14:00,709] [Preprocessor.java:241] [main] Processing chromosome scaffold1081 Processing chromosome scaffold1081 INFO [2014-03-08 06:14:00,731] [Preprocessor.java:241] [main] Processing chromosome scaffold1082 Processing chromosome scaffold1082 INFO [2014-03-08 06:14:00,753] [Preprocessor.java:241] [main] Processing chromosome scaffold1083 Processing chromosome scaffold1083 INFO [2014-03-08 06:14:00,883] [Preprocessor.java:241] [main] Processing chromosome scaffold1084 Processing chromosome scaffold1084 INFO [2014-03-08 06:14:00,945] [Preprocessor.java:241] [main] Processing chromosome scaffold1085 Processing chromosome scaffold1085 INFO [2014-03-08 06:14:00,965] [Preprocessor.java:241] [main] Processing chromosome scaffold1086 Processing chromosome scaffold1086 INFO [2014-03-08 06:14:01,170] [Preprocessor.java:241] [main] Processing chromosome scaffold1087 Processing chromosome scaffold1087 INFO [2014-03-08 06:14:01,201] [Preprocessor.java:241] [main] Processing chromosome scaffold1088 Processing chromosome scaffold1088 INFO [2014-03-08 06:14:01,252] [Preprocessor.java:241] [main] Processing chromosome scaffold1089 Processing chromosome scaffold1089 INFO [2014-03-08 06:14:01,261] [Preprocessor.java:241] [main] Processing chromosome scaffold109 Processing chromosome scaffold109 INFO [2014-03-08 06:14:01,349] [Preprocessor.java:241] [main] Processing chromosome scaffold1090 Processing chromosome scaffold1090 INFO [2014-03-08 06:14:01,380] [Preprocessor.java:241] [main] Processing chromosome scaffold1091 Processing chromosome scaffold1091 INFO [2014-03-08 06:14:01,391] [Preprocessor.java:241] [main] Processing chromosome scaffold1092 Processing chromosome scaffold1092 INFO [2014-03-08 06:14:01,401] [Preprocessor.java:241] [main] Processing chromosome scaffold1093 Processing chromosome scaffold1093 INFO [2014-03-08 06:14:01,532] [Preprocessor.java:241] [main] Processing chromosome scaffold1094 Processing chromosome scaffold1094 INFO [2014-03-08 06:14:01,707] [Preprocessor.java:241] [main] Processing chromosome scaffold1095 Processing chromosome scaffold1095 INFO [2014-03-08 06:14:01,714] [Preprocessor.java:241] [main] Processing chromosome scaffold1096 Processing chromosome scaffold1096 INFO [2014-03-08 06:14:01,749] [Preprocessor.java:241] [main] Processing chromosome scaffold1097 Processing chromosome scaffold1097 INFO [2014-03-08 06:14:01,895] [Preprocessor.java:241] [main] Processing chromosome scaffold1098 Processing chromosome scaffold1098 INFO [2014-03-08 06:14:01,919] [Preprocessor.java:241] [main] Processing chromosome scaffold1099 Processing chromosome scaffold1099 INFO [2014-03-08 06:14:01,926] [Preprocessor.java:241] [main] Processing chromosome scaffold11 Processing chromosome scaffold11 INFO [2014-03-08 06:14:01,998] [Preprocessor.java:241] [main] Processing chromosome scaffold110 Processing chromosome scaffold110 INFO [2014-03-08 06:14:02,059] [Preprocessor.java:241] [main] Processing chromosome scaffold1100 Processing chromosome scaffold1100 INFO [2014-03-08 06:14:02,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1101 Processing chromosome scaffold1101 INFO [2014-03-08 06:14:02,215] [Preprocessor.java:241] [main] Processing chromosome scaffold1102 Processing chromosome scaffold1102 INFO [2014-03-08 06:14:02,260] [Preprocessor.java:241] [main] Processing chromosome scaffold1103 Processing chromosome scaffold1103 INFO [2014-03-08 06:14:02,299] [Preprocessor.java:241] [main] Processing chromosome scaffold1104 Processing chromosome scaffold1104 INFO [2014-03-08 06:14:02,464] [Preprocessor.java:241] [main] Processing chromosome scaffold1105 Processing chromosome scaffold1105 INFO [2014-03-08 06:14:02,481] [Preprocessor.java:241] [main] Processing chromosome scaffold1106 Processing chromosome scaffold1106 INFO [2014-03-08 06:14:02,499] [Preprocessor.java:241] [main] Processing chromosome scaffold1107 Processing chromosome scaffold1107 INFO [2014-03-08 06:14:02,569] [Preprocessor.java:241] [main] Processing chromosome scaffold1108 Processing chromosome scaffold1108 .INFO [2014-03-08 06:14:02,722] [Preprocessor.java:241] [main] Processing chromosome scaffold1110 Processing chromosome scaffold1110 INFO [2014-03-08 06:14:02,736] [Preprocessor.java:241] [main] Processing chromosome scaffold1111 Processing chromosome scaffold1111 INFO [2014-03-08 06:14:02,765] [Preprocessor.java:241] [main] Processing chromosome scaffold1112 Processing chromosome scaffold1112 INFO [2014-03-08 06:14:02,812] [Preprocessor.java:241] [main] Processing chromosome scaffold1113 Processing chromosome scaffold1113 INFO [2014-03-08 06:14:02,862] [Preprocessor.java:241] [main] Processing chromosome scaffold1114 Processing chromosome scaffold1114 INFO [2014-03-08 06:14:02,881] [Preprocessor.java:241] [main] Processing chromosome scaffold1115 Processing chromosome scaffold1115 INFO [2014-03-08 06:14:02,902] [Preprocessor.java:241] [main] Processing chromosome scaffold1116 Processing chromosome scaffold1116 INFO [2014-03-08 06:14:02,974] [Preprocessor.java:241] [main] Processing chromosome scaffold1117 Processing chromosome scaffold1117 INFO [2014-03-08 06:14:03,000] [Preprocessor.java:241] [main] Processing chromosome scaffold1118 Processing chromosome scaffold1118 INFO [2014-03-08 06:14:03,003] [Preprocessor.java:241] [main] Processing chromosome scaffold1119 Processing chromosome scaffold1119 INFO [2014-03-08 06:14:03,040] [Preprocessor.java:241] [main] Processing chromosome scaffold1120 Processing chromosome scaffold1120 INFO [2014-03-08 06:14:03,043] [Preprocessor.java:241] [main] Processing chromosome scaffold1121 Processing chromosome scaffold1121 INFO [2014-03-08 06:14:03,108] [Preprocessor.java:241] [main] Processing chromosome scaffold1122 Processing chromosome scaffold1122 INFO [2014-03-08 06:14:03,116] [Preprocessor.java:241] [main] Processing chromosome scaffold1123 Processing chromosome scaffold1123 INFO [2014-03-08 06:14:03,164] [Preprocessor.java:241] [main] Processing chromosome scaffold1124 Processing chromosome scaffold1124 INFO [2014-03-08 06:14:03,199] [Preprocessor.java:241] [main] Processing chromosome scaffold1125 Processing chromosome scaffold1125 INFO [2014-03-08 06:14:03,300] [Preprocessor.java:241] [main] Processing chromosome scaffold1127 Processing chromosome scaffold1127 INFO [2014-03-08 06:14:03,389] [Preprocessor.java:241] [main] Processing chromosome scaffold1128 Processing chromosome scaffold1128 INFO [2014-03-08 06:14:03,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1129 Processing chromosome scaffold1129 INFO [2014-03-08 06:14:03,450] [Preprocessor.java:241] [main] Processing chromosome scaffold113 Processing chromosome scaffold113 INFO [2014-03-08 06:14:03,513] [Preprocessor.java:241] [main] Processing chromosome scaffold1131 Processing chromosome scaffold1131 INFO [2014-03-08 06:14:03,561] [Preprocessor.java:241] [main] Processing chromosome scaffold1132 Processing chromosome scaffold1132 INFO [2014-03-08 06:14:03,682] [Preprocessor.java:241] [main] Processing chromosome scaffold1133 Processing chromosome scaffold1133 INFO [2014-03-08 06:14:03,690] [Preprocessor.java:241] [main] Processing chromosome scaffold1134 Processing chromosome scaffold1134 INFO [2014-03-08 06:14:03,723] [Preprocessor.java:241] [main] Processing chromosome scaffold1135 Processing chromosome scaffold1135 INFO [2014-03-08 06:14:03,726] [Preprocessor.java:241] [main] Processing chromosome scaffold1136 Processing chromosome scaffold1136 INFO [2014-03-08 06:14:03,758] [Preprocessor.java:241] [main] Processing chromosome scaffold1137 Processing chromosome scaffold1137 INFO [2014-03-08 06:14:03,789] [Preprocessor.java:241] [main] Processing chromosome scaffold1138 Processing chromosome scaffold1138 INFO [2014-03-08 06:14:03,861] [Preprocessor.java:241] [main] Processing chromosome scaffold1139 Processing chromosome scaffold1139 INFO [2014-03-08 06:14:03,885] [Preprocessor.java:241] [main] Processing chromosome scaffold114 Processing chromosome scaffold114 INFO [2014-03-08 06:14:03,896] [Preprocessor.java:241] [main] Processing chromosome scaffold1140 Processing chromosome scaffold1140 INFO [2014-03-08 06:14:03,915] [Preprocessor.java:241] [main] Processing chromosome scaffold1141 Processing chromosome scaffold1141 INFO [2014-03-08 06:14:03,936] [Preprocessor.java:241] [main] Processing chromosome scaffold1142 Processing chromosome scaffold1142 INFO [2014-03-08 06:14:03,986] [Preprocessor.java:241] [main] Processing chromosome scaffold1143 Processing chromosome scaffold1143 INFO [2014-03-08 06:14:04,015] [Preprocessor.java:241] [main] Processing chromosome scaffold1144 Processing chromosome scaffold1144 INFO [2014-03-08 06:14:04,097] [Preprocessor.java:241] [main] Processing chromosome scaffold1147 Processing chromosome scaffold1147 INFO [2014-03-08 06:14:04,190] [Preprocessor.java:241] [main] Processing chromosome scaffold1148 Processing chromosome scaffold1148 INFO [2014-03-08 06:14:04,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1149 Processing chromosome scaffold1149 INFO [2014-03-08 06:14:04,310] [Preprocessor.java:241] [main] Processing chromosome scaffold115 Processing chromosome scaffold115 INFO [2014-03-08 06:14:04,392] [Preprocessor.java:241] [main] Processing chromosome scaffold1150 Processing chromosome scaffold1150 INFO [2014-03-08 06:14:04,405] [Preprocessor.java:241] [main] Processing chromosome scaffold1152 Processing chromosome scaffold1152 INFO [2014-03-08 06:14:04,595] [Preprocessor.java:241] [main] Processing chromosome scaffold1154 Processing chromosome scaffold1154 INFO [2014-03-08 06:14:04,822] [Preprocessor.java:241] [main] Processing chromosome scaffold1155 Processing chromosome scaffold1155 INFO [2014-03-08 06:14:04,868] [Preprocessor.java:241] [main] Processing chromosome scaffold1156 Processing chromosome scaffold1156 INFO [2014-03-08 06:14:04,893] [Preprocessor.java:241] [main] Processing chromosome scaffold1157 Processing chromosome scaffold1157 INFO [2014-03-08 06:14:04,964] [Preprocessor.java:241] [main] Processing chromosome scaffold1159 Processing chromosome scaffold1159 INFO [2014-03-08 06:14:05,020] [Preprocessor.java:241] [main] Processing chromosome scaffold116 Processing chromosome scaffold116 INFO [2014-03-08 06:14:05,055] [Preprocessor.java:241] [main] Processing chromosome scaffold1160 Processing chromosome scaffold1160 INFO [2014-03-08 06:14:05,130] [Preprocessor.java:241] [main] Processing chromosome scaffold1161 Processing chromosome scaffold1161 INFO [2014-03-08 06:14:05,162] [Preprocessor.java:241] [main] Processing chromosome scaffold1163 Processing chromosome scaffold1163 INFO [2014-03-08 06:14:05,255] [Preprocessor.java:241] [main] Processing chromosome scaffold1164 Processing chromosome scaffold1164 INFO [2014-03-08 06:14:05,402] [Preprocessor.java:241] [main] Processing chromosome scaffold1166 Processing chromosome scaffold1166 INFO [2014-03-08 06:14:05,424] [Preprocessor.java:241] [main] Processing chromosome scaffold1168 Processing chromosome scaffold1168 INFO [2014-03-08 06:14:05,441] [Preprocessor.java:241] [main] Processing chromosome scaffold117 Processing chromosome scaffold117 INFO [2014-03-08 06:14:05,515] [Preprocessor.java:241] [main] Processing chromosome scaffold1170 Processing chromosome scaffold1170 INFO [2014-03-08 06:14:05,524] [Preprocessor.java:241] [main] Processing chromosome scaffold1171 Processing chromosome scaffold1171 INFO [2014-03-08 06:14:05,554] [Preprocessor.java:241] [main] Processing chromosome scaffold1172 Processing chromosome scaffold1172 INFO [2014-03-08 06:14:05,614] [Preprocessor.java:241] [main] Processing chromosome scaffold1173 Processing chromosome scaffold1173 INFO [2014-03-08 06:14:05,645] [Preprocessor.java:241] [main] Processing chromosome scaffold1174 Processing chromosome scaffold1174 INFO [2014-03-08 06:14:05,866] [Preprocessor.java:241] [main] Processing chromosome scaffold1177 Processing chromosome scaffold1177 INFO [2014-03-08 06:14:05,908] [Preprocessor.java:241] [main] Processing chromosome scaffold1178 Processing chromosome scaffold1178 INFO [2014-03-08 06:14:05,914] [Preprocessor.java:241] [main] Processing chromosome scaffold1179 Processing chromosome scaffold1179 .INFO [2014-03-08 06:14:06,176] [Preprocessor.java:241] [main] Processing chromosome scaffold118 Processing chromosome scaffold118 INFO [2014-03-08 06:14:06,219] [Preprocessor.java:241] [main] Processing chromosome scaffold1180 Processing chromosome scaffold1180 INFO [2014-03-08 06:14:06,285] [Preprocessor.java:241] [main] Processing chromosome scaffold1181 Processing chromosome scaffold1181 INFO [2014-03-08 06:14:06,316] [Preprocessor.java:241] [main] Processing chromosome scaffold1182 Processing chromosome scaffold1182 INFO [2014-03-08 06:14:06,340] [Preprocessor.java:241] [main] Processing chromosome scaffold1183 Processing chromosome scaffold1183 INFO [2014-03-08 06:14:06,375] [Preprocessor.java:241] [main] Processing chromosome scaffold1184 Processing chromosome scaffold1184 INFO [2014-03-08 06:14:06,395] [Preprocessor.java:241] [main] Processing chromosome scaffold1185 Processing chromosome scaffold1185 INFO [2014-03-08 06:14:06,480] [Preprocessor.java:241] [main] Processing chromosome scaffold1186 Processing chromosome scaffold1186 INFO [2014-03-08 06:14:06,508] [Preprocessor.java:241] [main] Processing chromosome scaffold1187 Processing chromosome scaffold1187 INFO [2014-03-08 06:14:06,532] [Preprocessor.java:241] [main] Processing chromosome scaffold1188 Processing chromosome scaffold1188 INFO [2014-03-08 06:14:06,673] [Preprocessor.java:241] [main] Processing chromosome scaffold1189 Processing chromosome scaffold1189 INFO [2014-03-08 06:14:06,826] [Preprocessor.java:241] [main] Processing chromosome scaffold119 Processing chromosome scaffold119 INFO [2014-03-08 06:14:06,854] [Preprocessor.java:241] [main] Processing chromosome scaffold1190 Processing chromosome scaffold1190 INFO [2014-03-08 06:14:06,866] [Preprocessor.java:241] [main] Processing chromosome scaffold1191 Processing chromosome scaffold1191 INFO [2014-03-08 06:14:06,908] [Preprocessor.java:241] [main] Processing chromosome scaffold1194 Processing chromosome scaffold1194 INFO [2014-03-08 06:14:06,927] [Preprocessor.java:241] [main] Processing chromosome scaffold1195 Processing chromosome scaffold1195 INFO [2014-03-08 06:14:07,025] [Preprocessor.java:241] [main] Processing chromosome scaffold1196 Processing chromosome scaffold1196 INFO [2014-03-08 06:14:07,052] [Preprocessor.java:241] [main] Processing chromosome scaffold1198 Processing chromosome scaffold1198 INFO [2014-03-08 06:14:07,062] [Preprocessor.java:241] [main] Processing chromosome scaffold1199 Processing chromosome scaffold1199 INFO [2014-03-08 06:14:07,096] [Preprocessor.java:241] [main] Processing chromosome scaffold12 Processing chromosome scaffold12 INFO [2014-03-08 06:14:07,257] [Preprocessor.java:241] [main] Processing chromosome scaffold120 Processing chromosome scaffold120 INFO [2014-03-08 06:14:07,374] [Preprocessor.java:241] [main] Processing chromosome scaffold1200 Processing chromosome scaffold1200 INFO [2014-03-08 06:14:07,413] [Preprocessor.java:241] [main] Processing chromosome scaffold1202 Processing chromosome scaffold1202 INFO [2014-03-08 06:14:07,420] [Preprocessor.java:241] [main] Processing chromosome scaffold1203 Processing chromosome scaffold1203 INFO [2014-03-08 06:14:07,546] [Preprocessor.java:241] [main] Processing chromosome scaffold1204 Processing chromosome scaffold1204 INFO [2014-03-08 06:14:07,596] [Preprocessor.java:241] [main] Processing chromosome scaffold1205 Processing chromosome scaffold1205 INFO [2014-03-08 06:14:07,625] [Preprocessor.java:241] [main] Processing chromosome scaffold1206 Processing chromosome scaffold1206 INFO [2014-03-08 06:14:07,640] [Preprocessor.java:241] [main] Processing chromosome scaffold1208 Processing chromosome scaffold1208 INFO [2014-03-08 06:14:07,651] [Preprocessor.java:241] [main] Processing chromosome scaffold1209 Processing chromosome scaffold1209 INFO [2014-03-08 06:14:07,692] [Preprocessor.java:241] [main] Processing chromosome scaffold121 Processing chromosome scaffold121 INFO [2014-03-08 06:14:07,957] [Preprocessor.java:241] [main] Processing chromosome scaffold1210 Processing chromosome scaffold1210 INFO [2014-03-08 06:14:08,059] [Preprocessor.java:241] [main] Processing chromosome scaffold1212 Processing chromosome scaffold1212 INFO [2014-03-08 06:14:08,123] [Preprocessor.java:241] [main] Processing chromosome scaffold1213 Processing chromosome scaffold1213 INFO [2014-03-08 06:14:08,355] [Preprocessor.java:241] [main] Processing chromosome scaffold1214 Processing chromosome scaffold1214 INFO [2014-03-08 06:14:08,418] [Preprocessor.java:241] [main] Processing chromosome scaffold1217 Processing chromosome scaffold1217 INFO [2014-03-08 06:14:08,463] [Preprocessor.java:241] [main] Processing chromosome scaffold1218 Processing chromosome scaffold1218 INFO [2014-03-08 06:14:08,469] [Preprocessor.java:241] [main] Processing chromosome scaffold1219 Processing chromosome scaffold1219 INFO [2014-03-08 06:14:08,703] [Preprocessor.java:241] [main] Processing chromosome scaffold122 Processing chromosome scaffold122 INFO [2014-03-08 06:14:08,787] [Preprocessor.java:241] [main] Processing chromosome scaffold1220 Processing chromosome scaffold1220 INFO [2014-03-08 06:14:08,825] [Preprocessor.java:241] [main] Processing chromosome scaffold1221 Processing chromosome scaffold1221 INFO [2014-03-08 06:14:08,923] [Preprocessor.java:241] [main] Processing chromosome scaffold1222 Processing chromosome scaffold1222 INFO [2014-03-08 06:14:09,015] [Preprocessor.java:241] [main] Processing chromosome scaffold1223 Processing chromosome scaffold1223 INFO [2014-03-08 06:14:09,030] [Preprocessor.java:241] [main] Processing chromosome scaffold1225 Processing chromosome scaffold1225 INFO [2014-03-08 06:14:09,043] [Preprocessor.java:241] [main] Processing chromosome scaffold1226 Processing chromosome scaffold1226 INFO [2014-03-08 06:14:09,071] [Preprocessor.java:241] [main] Processing chromosome scaffold1227 Processing chromosome scaffold1227 INFO [2014-03-08 06:14:09,128] [Preprocessor.java:241] [main] Processing chromosome scaffold1228 Processing chromosome scaffold1228 .INFO [2014-03-08 06:14:09,210] [Preprocessor.java:241] [main] Processing chromosome scaffold123 Processing chromosome scaffold123 INFO [2014-03-08 06:14:09,237] [Preprocessor.java:241] [main] Processing chromosome scaffold1230 Processing chromosome scaffold1230 INFO [2014-03-08 06:14:09,259] [Preprocessor.java:241] [main] Processing chromosome scaffold1231 Processing chromosome scaffold1231 INFO [2014-03-08 06:14:09,313] [Preprocessor.java:241] [main] Processing chromosome scaffold1232 Processing chromosome scaffold1232 INFO [2014-03-08 06:14:09,450] [Preprocessor.java:241] [main] Processing chromosome scaffold1233 Processing chromosome scaffold1233 INFO [2014-03-08 06:14:09,468] [Preprocessor.java:241] [main] Processing chromosome scaffold1234 Processing chromosome scaffold1234 INFO [2014-03-08 06:14:09,524] [Preprocessor.java:241] [main] Processing chromosome scaffold1235 Processing chromosome scaffold1235 INFO [2014-03-08 06:14:09,591] [Preprocessor.java:241] [main] Processing chromosome scaffold1236 Processing chromosome scaffold1236 INFO [2014-03-08 06:14:09,608] [Preprocessor.java:241] [main] Processing chromosome scaffold1237 Processing chromosome scaffold1237 INFO [2014-03-08 06:14:09,655] [Preprocessor.java:241] [main] Processing chromosome scaffold1238 Processing chromosome scaffold1238 INFO [2014-03-08 06:14:09,699] [Preprocessor.java:241] [main] Processing chromosome scaffold1240 Processing chromosome scaffold1240 INFO [2014-03-08 06:14:09,711] [Preprocessor.java:241] [main] Processing chromosome scaffold1241 Processing chromosome scaffold1241 INFO [2014-03-08 06:14:09,817] [Preprocessor.java:241] [main] Processing chromosome scaffold1242 Processing chromosome scaffold1242 INFO [2014-03-08 06:14:09,841] [Preprocessor.java:241] [main] Processing chromosome scaffold1243 Processing chromosome scaffold1243 INFO [2014-03-08 06:14:09,849] [Preprocessor.java:241] [main] Processing chromosome scaffold1244 Processing chromosome scaffold1244 INFO [2014-03-08 06:14:09,924] [Preprocessor.java:241] [main] Processing chromosome scaffold1245 Processing chromosome scaffold1245 INFO [2014-03-08 06:14:09,992] [Preprocessor.java:241] [main] Processing chromosome scaffold1246 Processing chromosome scaffold1246 INFO [2014-03-08 06:14:10,028] [Preprocessor.java:241] [main] Processing chromosome scaffold1247 Processing chromosome scaffold1247 INFO [2014-03-08 06:14:10,086] [Preprocessor.java:241] [main] Processing chromosome scaffold1249 Processing chromosome scaffold1249 INFO [2014-03-08 06:14:10,206] [Preprocessor.java:241] [main] Processing chromosome scaffold1250 Processing chromosome scaffold1250 INFO [2014-03-08 06:14:10,224] [Preprocessor.java:241] [main] Processing chromosome scaffold1251 Processing chromosome scaffold1251 INFO [2014-03-08 06:14:10,257] [Preprocessor.java:241] [main] Processing chromosome scaffold1252 Processing chromosome scaffold1252 INFO [2014-03-08 06:14:10,300] [Preprocessor.java:241] [main] Processing chromosome scaffold1253 Processing chromosome scaffold1253 INFO [2014-03-08 06:14:10,328] [Preprocessor.java:241] [main] Processing chromosome scaffold1254 Processing chromosome scaffold1254 INFO [2014-03-08 06:14:10,362] [Preprocessor.java:241] [main] Processing chromosome scaffold1255 Processing chromosome scaffold1255 INFO [2014-03-08 06:14:10,545] [Preprocessor.java:241] [main] Processing chromosome scaffold1256 Processing chromosome scaffold1256 INFO [2014-03-08 06:14:10,592] [Preprocessor.java:241] [main] Processing chromosome scaffold1257 Processing chromosome scaffold1257 INFO [2014-03-08 06:14:10,633] [Preprocessor.java:241] [main] Processing chromosome scaffold1258 Processing chromosome scaffold1258 INFO [2014-03-08 06:14:10,783] [Preprocessor.java:241] [main] Processing chromosome scaffold1259 Processing chromosome scaffold1259 INFO [2014-03-08 06:14:10,803] [Preprocessor.java:241] [main] Processing chromosome scaffold126 Processing chromosome scaffold126 INFO [2014-03-08 06:14:10,845] [Preprocessor.java:241] [main] Processing chromosome scaffold1260 Processing chromosome scaffold1260 INFO [2014-03-08 06:14:10,871] [Preprocessor.java:241] [main] Processing chromosome scaffold1261 Processing chromosome scaffold1261 INFO [2014-03-08 06:14:10,887] [Preprocessor.java:241] [main] Processing chromosome scaffold1262 Processing chromosome scaffold1262 INFO [2014-03-08 06:14:11,000] [Preprocessor.java:241] [main] Processing chromosome scaffold1263 Processing chromosome scaffold1263 INFO [2014-03-08 06:14:11,009] [Preprocessor.java:241] [main] Processing chromosome scaffold1264 Processing chromosome scaffold1264 INFO [2014-03-08 06:14:11,063] [Preprocessor.java:241] [main] Processing chromosome scaffold1266 Processing chromosome scaffold1266 INFO [2014-03-08 06:14:11,094] [Preprocessor.java:241] [main] Processing chromosome scaffold1267 Processing chromosome scaffold1267 INFO [2014-03-08 06:14:11,218] [Preprocessor.java:241] [main] Processing chromosome scaffold1268 Processing chromosome scaffold1268 INFO [2014-03-08 06:14:11,238] [Preprocessor.java:241] [main] Processing chromosome scaffold1269 Processing chromosome scaffold1269 INFO [2014-03-08 06:14:11,252] [Preprocessor.java:241] [main] Processing chromosome scaffold127 Processing chromosome scaffold127 INFO [2014-03-08 06:14:11,281] [Preprocessor.java:241] [main] Processing chromosome scaffold1270 Processing chromosome scaffold1270 INFO [2014-03-08 06:14:11,295] [Preprocessor.java:241] [main] Processing chromosome scaffold1271 Processing chromosome scaffold1271 INFO [2014-03-08 06:14:11,357] [Preprocessor.java:241] [main] Processing chromosome scaffold1272 Processing chromosome scaffold1272 INFO [2014-03-08 06:14:11,386] [Preprocessor.java:241] [main] Processing chromosome scaffold1273 Processing chromosome scaffold1273 INFO [2014-03-08 06:14:11,393] [Preprocessor.java:241] [main] Processing chromosome scaffold1276 Processing chromosome scaffold1276 INFO [2014-03-08 06:14:11,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1277 Processing chromosome scaffold1277 INFO [2014-03-08 06:14:11,450] [Preprocessor.java:241] [main] Processing chromosome scaffold1278 Processing chromosome scaffold1278 INFO [2014-03-08 06:14:11,468] [Preprocessor.java:241] [main] Processing chromosome scaffold1279 Processing chromosome scaffold1279 INFO [2014-03-08 06:14:11,517] [Preprocessor.java:241] [main] Processing chromosome scaffold128 Processing chromosome scaffold128 INFO [2014-03-08 06:14:11,612] [Preprocessor.java:241] [main] Processing chromosome scaffold1280 Processing chromosome scaffold1280 INFO [2014-03-08 06:14:11,648] [Preprocessor.java:241] [main] Processing chromosome scaffold1281 Processing chromosome scaffold1281 INFO [2014-03-08 06:14:11,658] [Preprocessor.java:241] [main] Processing chromosome scaffold1282 Processing chromosome scaffold1282 INFO [2014-03-08 06:14:11,694] [Preprocessor.java:241] [main] Processing chromosome scaffold1283 Processing chromosome scaffold1283 INFO [2014-03-08 06:14:11,747] [Preprocessor.java:241] [main] Processing chromosome scaffold1284 Processing chromosome scaffold1284 INFO [2014-03-08 06:14:11,769] [Preprocessor.java:241] [main] Processing chromosome scaffold1286 Processing chromosome scaffold1286 INFO [2014-03-08 06:14:11,850] [Preprocessor.java:241] [main] Processing chromosome scaffold1288 Processing chromosome scaffold1288 INFO [2014-03-08 06:14:11,958] [Preprocessor.java:241] [main] Processing chromosome scaffold1289 Processing chromosome scaffold1289 INFO [2014-03-08 06:14:11,992] [Preprocessor.java:241] [main] Processing chromosome scaffold129 Processing chromosome scaffold129 INFO [2014-03-08 06:14:12,003] [Preprocessor.java:241] [main] Processing chromosome scaffold1290 Processing chromosome scaffold1290 INFO [2014-03-08 06:14:12,056] [Preprocessor.java:241] [main] Processing chromosome scaffold1291 Processing chromosome scaffold1291 INFO [2014-03-08 06:14:12,063] [Preprocessor.java:241] [main] Processing chromosome scaffold1292 Processing chromosome scaffold1292 INFO [2014-03-08 06:14:12,079] [Preprocessor.java:241] [main] Processing chromosome scaffold1293 Processing chromosome scaffold1293 INFO [2014-03-08 06:14:12,159] [Preprocessor.java:241] [main] Processing chromosome scaffold1295 Processing chromosome scaffold1295 INFO [2014-03-08 06:14:12,195] [Preprocessor.java:241] [main] Processing chromosome scaffold1297 Processing chromosome scaffold1297 INFO [2014-03-08 06:14:12,261] [Preprocessor.java:241] [main] Processing chromosome scaffold1298 Processing chromosome scaffold1298 INFO [2014-03-08 06:14:12,285] [Preprocessor.java:241] [main] Processing chromosome scaffold1299 Processing chromosome scaffold1299 INFO [2014-03-08 06:14:12,363] [Preprocessor.java:241] [main] Processing chromosome scaffold13 Processing chromosome scaffold13 INFO [2014-03-08 06:14:12,435] [Preprocessor.java:241] [main] Processing chromosome scaffold130 Processing chromosome scaffold130 INFO [2014-03-08 06:14:12,474] [Preprocessor.java:241] [main] Processing chromosome scaffold1300 Processing chromosome scaffold1300 INFO [2014-03-08 06:14:12,502] [Preprocessor.java:241] [main] Processing chromosome scaffold1301 Processing chromosome scaffold1301 INFO [2014-03-08 06:14:12,818] [Preprocessor.java:241] [main] Processing chromosome scaffold1302 Processing chromosome scaffold1302 INFO [2014-03-08 06:14:12,865] [Preprocessor.java:241] [main] Processing chromosome scaffold1304 Processing chromosome scaffold1304 INFO [2014-03-08 06:14:12,913] [Preprocessor.java:241] [main] Processing chromosome scaffold1307 Processing chromosome scaffold1307 .INFO [2014-03-08 06:14:13,071] [Preprocessor.java:241] [main] Processing chromosome scaffold1308 Processing chromosome scaffold1308 INFO [2014-03-08 06:14:13,097] [Preprocessor.java:241] [main] Processing chromosome scaffold1309 Processing chromosome scaffold1309 INFO [2014-03-08 06:14:13,224] [Preprocessor.java:241] [main] Processing chromosome scaffold1310 Processing chromosome scaffold1310 INFO [2014-03-08 06:14:13,243] [Preprocessor.java:241] [main] Processing chromosome scaffold1311 Processing chromosome scaffold1311 INFO [2014-03-08 06:14:13,254] [Preprocessor.java:241] [main] Processing chromosome scaffold1312 Processing chromosome scaffold1312 INFO [2014-03-08 06:14:13,282] [Preprocessor.java:241] [main] Processing chromosome scaffold1314 Processing chromosome scaffold1314 INFO [2014-03-08 06:14:13,311] [Preprocessor.java:241] [main] Processing chromosome scaffold1315 Processing chromosome scaffold1315 INFO [2014-03-08 06:14:13,433] [Preprocessor.java:241] [main] Processing chromosome scaffold1316 Processing chromosome scaffold1316 INFO [2014-03-08 06:14:13,532] [Preprocessor.java:241] [main] Processing chromosome scaffold1317 Processing chromosome scaffold1317 INFO [2014-03-08 06:14:13,572] [Preprocessor.java:241] [main] Processing chromosome scaffold1318 Processing chromosome scaffold1318 INFO [2014-03-08 06:14:13,593] [Preprocessor.java:241] [main] Processing chromosome scaffold132 Processing chromosome scaffold132 INFO [2014-03-08 06:14:13,643] [Preprocessor.java:241] [main] Processing chromosome scaffold1320 Processing chromosome scaffold1320 INFO [2014-03-08 06:14:13,665] [Preprocessor.java:241] [main] Processing chromosome scaffold1321 Processing chromosome scaffold1321 INFO [2014-03-08 06:14:13,695] [Preprocessor.java:241] [main] Processing chromosome scaffold1322 Processing chromosome scaffold1322 INFO [2014-03-08 06:14:13,803] [Preprocessor.java:241] [main] Processing chromosome scaffold1323 Processing chromosome scaffold1323 INFO [2014-03-08 06:14:13,835] [Preprocessor.java:241] [main] Processing chromosome scaffold1324 Processing chromosome scaffold1324 INFO [2014-03-08 06:14:13,951] [Preprocessor.java:241] [main] Processing chromosome scaffold1325 Processing chromosome scaffold1325 INFO [2014-03-08 06:14:13,973] [Preprocessor.java:241] [main] Processing chromosome scaffold1326 Processing chromosome scaffold1326 INFO [2014-03-08 06:14:13,981] [Preprocessor.java:241] [main] Processing chromosome scaffold1327 Processing chromosome scaffold1327 INFO [2014-03-08 06:14:14,069] [Preprocessor.java:241] [main] Processing chromosome scaffold1328 Processing chromosome scaffold1328 INFO [2014-03-08 06:14:14,125] [Preprocessor.java:241] [main] Processing chromosome scaffold1329 Processing chromosome scaffold1329 INFO [2014-03-08 06:14:14,182] [Preprocessor.java:241] [main] Processing chromosome scaffold133 Processing chromosome scaffold133 INFO [2014-03-08 06:14:14,200] [Preprocessor.java:241] [main] Processing chromosome scaffold1330 Processing chromosome scaffold1330 INFO [2014-03-08 06:14:14,250] [Preprocessor.java:241] [main] Processing chromosome scaffold1331 Processing chromosome scaffold1331 INFO [2014-03-08 06:14:14,294] [Preprocessor.java:241] [main] Processing chromosome scaffold1333 Processing chromosome scaffold1333 INFO [2014-03-08 06:14:14,380] [Preprocessor.java:241] [main] Processing chromosome scaffold1334 Processing chromosome scaffold1334 INFO [2014-03-08 06:14:14,393] [Preprocessor.java:241] [main] Processing chromosome scaffold1335 Processing chromosome scaffold1335 INFO [2014-03-08 06:14:14,407] [Preprocessor.java:241] [main] Processing chromosome scaffold1336 Processing chromosome scaffold1336 INFO [2014-03-08 06:14:14,425] [Preprocessor.java:241] [main] Processing chromosome scaffold1337 Processing chromosome scaffold1337 INFO [2014-03-08 06:14:14,483] [Preprocessor.java:241] [main] Processing chromosome scaffold1338 Processing chromosome scaffold1338 INFO [2014-03-08 06:14:14,508] [Preprocessor.java:241] [main] Processing chromosome scaffold1339 Processing chromosome scaffold1339 INFO [2014-03-08 06:14:14,532] [Preprocessor.java:241] [main] Processing chromosome scaffold134 Processing chromosome scaffold134 INFO [2014-03-08 06:14:14,538] [Preprocessor.java:241] [main] Processing chromosome scaffold1340 Processing chromosome scaffold1340 INFO [2014-03-08 06:14:14,596] [Preprocessor.java:241] [main] Processing chromosome scaffold1341 Processing chromosome scaffold1341 INFO [2014-03-08 06:14:14,664] [Preprocessor.java:241] [main] Processing chromosome scaffold1342 Processing chromosome scaffold1342 INFO [2014-03-08 06:14:14,679] [Preprocessor.java:241] [main] Processing chromosome scaffold1343 Processing chromosome scaffold1343 INFO [2014-03-08 06:14:14,700] [Preprocessor.java:241] [main] Processing chromosome scaffold1344 Processing chromosome scaffold1344 INFO [2014-03-08 06:14:14,713] [Preprocessor.java:241] [main] Processing chromosome scaffold1345 Processing chromosome scaffold1345 INFO [2014-03-08 06:14:14,756] [Preprocessor.java:241] [main] Processing chromosome scaffold1346 Processing chromosome scaffold1346 INFO [2014-03-08 06:14:14,765] [Preprocessor.java:241] [main] Processing chromosome scaffold1347 Processing chromosome scaffold1347 INFO [2014-03-08 06:14:14,815] [Preprocessor.java:241] [main] Processing chromosome scaffold1348 Processing chromosome scaffold1348 INFO [2014-03-08 06:14:14,886] [Preprocessor.java:241] [main] Processing chromosome scaffold1349 Processing chromosome scaffold1349 INFO [2014-03-08 06:14:14,922] [Preprocessor.java:241] [main] Processing chromosome scaffold1350 Processing chromosome scaffold1350 INFO [2014-03-08 06:14:15,017] [Preprocessor.java:241] [main] Processing chromosome scaffold1351 Processing chromosome scaffold1351 INFO [2014-03-08 06:14:15,037] [Preprocessor.java:241] [main] Processing chromosome scaffold1352 Processing chromosome scaffold1352 INFO [2014-03-08 06:14:15,121] [Preprocessor.java:241] [main] Processing chromosome scaffold1353 Processing chromosome scaffold1353 INFO [2014-03-08 06:14:15,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1354 Processing chromosome scaffold1354 INFO [2014-03-08 06:14:15,206] [Preprocessor.java:241] [main] Processing chromosome scaffold1355 Processing chromosome scaffold1355 INFO [2014-03-08 06:14:15,218] [Preprocessor.java:241] [main] Processing chromosome scaffold1357 Processing chromosome scaffold1357 INFO [2014-03-08 06:14:15,248] [Preprocessor.java:241] [main] Processing chromosome scaffold1358 Processing chromosome scaffold1358 INFO [2014-03-08 06:14:15,295] [Preprocessor.java:241] [main] Processing chromosome scaffold1359 Processing chromosome scaffold1359 INFO [2014-03-08 06:14:15,378] [Preprocessor.java:241] [main] Processing chromosome scaffold1360 Processing chromosome scaffold1360 INFO [2014-03-08 06:14:15,491] [Preprocessor.java:241] [main] Processing chromosome scaffold1361 Processing chromosome scaffold1361 INFO [2014-03-08 06:14:15,518] [Preprocessor.java:241] [main] Processing chromosome scaffold1362 Processing chromosome scaffold1362 INFO [2014-03-08 06:14:15,675] [Preprocessor.java:241] [main] Processing chromosome scaffold1363 Processing chromosome scaffold1363 INFO [2014-03-08 06:14:15,710] [Preprocessor.java:241] [main] Processing chromosome scaffold1364 Processing chromosome scaffold1364 INFO [2014-03-08 06:14:15,752] [Preprocessor.java:241] [main] Processing chromosome scaffold1365 Processing chromosome scaffold1365 INFO [2014-03-08 06:14:15,777] [Preprocessor.java:241] [main] Processing chromosome scaffold1366 Processing chromosome scaffold1366 INFO [2014-03-08 06:14:15,870] [Preprocessor.java:241] [main] Processing chromosome scaffold1367 Processing chromosome scaffold1367 INFO [2014-03-08 06:14:15,877] [Preprocessor.java:241] [main] Processing chromosome scaffold1368 Processing chromosome scaffold1368 INFO [2014-03-08 06:14:15,896] [Preprocessor.java:241] [main] Processing chromosome scaffold1369 Processing chromosome scaffold1369 INFO [2014-03-08 06:14:15,928] [Preprocessor.java:241] [main] Processing chromosome scaffold137 Processing chromosome scaffold137 INFO [2014-03-08 06:14:15,956] [Preprocessor.java:241] [main] Processing chromosome scaffold1370 Processing chromosome scaffold1370 INFO [2014-03-08 06:14:15,997] [Preprocessor.java:241] [main] Processing chromosome scaffold1371 Processing chromosome scaffold1371 INFO [2014-03-08 06:14:16,040] [Preprocessor.java:241] [main] Processing chromosome scaffold1372 Processing chromosome scaffold1372 INFO [2014-03-08 06:14:16,184] [Preprocessor.java:241] [main] Processing chromosome scaffold1373 Processing chromosome scaffold1373 INFO [2014-03-08 06:14:16,235] [Preprocessor.java:241] [main] Processing chromosome scaffold1374 Processing chromosome scaffold1374 INFO [2014-03-08 06:14:16,251] [Preprocessor.java:241] [main] Processing chromosome scaffold1375 Processing chromosome scaffold1375 INFO [2014-03-08 06:14:16,301] [Preprocessor.java:241] [main] Processing chromosome scaffold1376 Processing chromosome scaffold1376 INFO [2014-03-08 06:14:16,331] [Preprocessor.java:241] [main] Processing chromosome scaffold1377 Processing chromosome scaffold1377 INFO [2014-03-08 06:14:16,354] [Preprocessor.java:241] [main] Processing chromosome scaffold1378 Processing chromosome scaffold1378 INFO [2014-03-08 06:14:16,367] [Preprocessor.java:241] [main] Processing chromosome scaffold1379 Processing chromosome scaffold1379 INFO [2014-03-08 06:14:16,373] [Preprocessor.java:241] [main] Processing chromosome scaffold138 Processing chromosome scaffold138 INFO [2014-03-08 06:14:16,419] [Preprocessor.java:241] [main] Processing chromosome scaffold1380 Processing chromosome scaffold1380 INFO [2014-03-08 06:14:16,430] [Preprocessor.java:241] [main] Processing chromosome scaffold1381 Processing chromosome scaffold1381 INFO [2014-03-08 06:14:16,442] [Preprocessor.java:241] [main] Processing chromosome scaffold1382 Processing chromosome scaffold1382 INFO [2014-03-08 06:14:16,489] [Preprocessor.java:241] [main] Processing chromosome scaffold1383 Processing chromosome scaffold1383 INFO [2014-03-08 06:14:16,511] [Preprocessor.java:241] [main] Processing chromosome scaffold1384 Processing chromosome scaffold1384 INFO [2014-03-08 06:14:16,537] [Preprocessor.java:241] [main] Processing chromosome scaffold1385 Processing chromosome scaffold1385 INFO [2014-03-08 06:14:16,683] [Preprocessor.java:241] [main] Processing chromosome scaffold1386 Processing chromosome scaffold1386 INFO [2014-03-08 06:14:16,736] [Preprocessor.java:241] [main] Processing chromosome scaffold1388 Processing chromosome scaffold1388 INFO [2014-03-08 06:14:16,773] [Preprocessor.java:241] [main] Processing chromosome scaffold1389 Processing chromosome scaffold1389 INFO [2014-03-08 06:14:16,798] [Preprocessor.java:241] [main] Processing chromosome scaffold139 Processing chromosome scaffold139 INFO [2014-03-08 06:14:16,824] [Preprocessor.java:241] [main] Processing chromosome scaffold1390 Processing chromosome scaffold1390 INFO [2014-03-08 06:14:16,848] [Preprocessor.java:241] [main] Processing chromosome scaffold1391 Processing chromosome scaffold1391 .INFO [2014-03-08 06:14:16,997] [Preprocessor.java:241] [main] Processing chromosome scaffold1392 Processing chromosome scaffold1392 INFO [2014-03-08 06:14:17,039] [Preprocessor.java:241] [main] Processing chromosome scaffold1393 Processing chromosome scaffold1393 INFO [2014-03-08 06:14:17,088] [Preprocessor.java:241] [main] Processing chromosome scaffold1394 Processing chromosome scaffold1394 INFO [2014-03-08 06:14:17,114] [Preprocessor.java:241] [main] Processing chromosome scaffold1395 Processing chromosome scaffold1395 INFO [2014-03-08 06:14:17,125] [Preprocessor.java:241] [main] Processing chromosome scaffold1396 Processing chromosome scaffold1396 INFO [2014-03-08 06:14:17,144] [Preprocessor.java:241] [main] Processing chromosome scaffold1397 Processing chromosome scaffold1397 INFO [2014-03-08 06:14:17,220] [Preprocessor.java:241] [main] Processing chromosome scaffold1399 Processing chromosome scaffold1399 INFO [2014-03-08 06:14:17,288] [Preprocessor.java:241] [main] Processing chromosome scaffold140 Processing chromosome scaffold140 INFO [2014-03-08 06:14:17,389] [Preprocessor.java:241] [main] Processing chromosome scaffold1400 Processing chromosome scaffold1400 INFO [2014-03-08 06:14:17,451] [Preprocessor.java:241] [main] Processing chromosome scaffold1401 Processing chromosome scaffold1401 INFO [2014-03-08 06:14:17,481] [Preprocessor.java:241] [main] Processing chromosome scaffold1402 Processing chromosome scaffold1402 INFO [2014-03-08 06:14:17,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1403 Processing chromosome scaffold1403 INFO [2014-03-08 06:14:17,662] [Preprocessor.java:241] [main] Processing chromosome scaffold1404 Processing chromosome scaffold1404 INFO [2014-03-08 06:14:17,747] [Preprocessor.java:241] [main] Processing chromosome scaffold1405 Processing chromosome scaffold1405 INFO [2014-03-08 06:14:17,768] [Preprocessor.java:241] [main] Processing chromosome scaffold1408 Processing chromosome scaffold1408 INFO [2014-03-08 06:14:17,785] [Preprocessor.java:241] [main] Processing chromosome scaffold1409 Processing chromosome scaffold1409 INFO [2014-03-08 06:14:17,876] [Preprocessor.java:241] [main] Processing chromosome scaffold141 Processing chromosome scaffold141 INFO [2014-03-08 06:14:17,925] [Preprocessor.java:241] [main] Processing chromosome scaffold1410 Processing chromosome scaffold1410 INFO [2014-03-08 06:14:17,983] [Preprocessor.java:241] [main] Processing chromosome scaffold1411 Processing chromosome scaffold1411 INFO [2014-03-08 06:14:18,023] [Preprocessor.java:241] [main] Processing chromosome scaffold1413 Processing chromosome scaffold1413 INFO [2014-03-08 06:14:18,050] [Preprocessor.java:241] [main] Processing chromosome scaffold1414 Processing chromosome scaffold1414 INFO [2014-03-08 06:14:18,090] [Preprocessor.java:241] [main] Processing chromosome scaffold1415 Processing chromosome scaffold1415 INFO [2014-03-08 06:14:18,112] [Preprocessor.java:241] [main] Processing chromosome scaffold1416 Processing chromosome scaffold1416 INFO [2014-03-08 06:14:18,173] [Preprocessor.java:241] [main] Processing chromosome scaffold1417 Processing chromosome scaffold1417 INFO [2014-03-08 06:14:18,198] [Preprocessor.java:241] [main] Processing chromosome scaffold1418 Processing chromosome scaffold1418 INFO [2014-03-08 06:14:18,213] [Preprocessor.java:241] [main] Processing chromosome scaffold1419 Processing chromosome scaffold1419 INFO [2014-03-08 06:14:18,310] [Preprocessor.java:241] [main] Processing chromosome scaffold142 Processing chromosome scaffold142 INFO [2014-03-08 06:14:18,441] [Preprocessor.java:241] [main] Processing chromosome scaffold1420 Processing chromosome scaffold1420 INFO [2014-03-08 06:14:18,464] [Preprocessor.java:241] [main] Processing chromosome scaffold1421 Processing chromosome scaffold1421 INFO [2014-03-08 06:14:18,502] [Preprocessor.java:241] [main] Processing chromosome scaffold1422 Processing chromosome scaffold1422 INFO [2014-03-08 06:14:18,509] [Preprocessor.java:241] [main] Processing chromosome scaffold1423 Processing chromosome scaffold1423 INFO [2014-03-08 06:14:18,688] [Preprocessor.java:241] [main] Processing chromosome scaffold1424 Processing chromosome scaffold1424 INFO [2014-03-08 06:14:18,710] [Preprocessor.java:241] [main] Processing chromosome scaffold1425 Processing chromosome scaffold1425 INFO [2014-03-08 06:14:18,743] [Preprocessor.java:241] [main] Processing chromosome scaffold1426 Processing chromosome scaffold1426 INFO [2014-03-08 06:14:18,808] [Preprocessor.java:241] [main] Processing chromosome scaffold1427 Processing chromosome scaffold1427 INFO [2014-03-08 06:14:18,849] [Preprocessor.java:241] [main] Processing chromosome scaffold1428 Processing chromosome scaffold1428 INFO [2014-03-08 06:14:18,865] [Preprocessor.java:241] [main] Processing chromosome scaffold1429 Processing chromosome scaffold1429 INFO [2014-03-08 06:14:18,877] [Preprocessor.java:241] [main] Processing chromosome scaffold143 Processing chromosome scaffold143 INFO [2014-03-08 06:14:18,945] [Preprocessor.java:241] [main] Processing chromosome scaffold1431 Processing chromosome scaffold1431 INFO [2014-03-08 06:14:18,982] [Preprocessor.java:241] [main] Processing chromosome scaffold1433 Processing chromosome scaffold1433 INFO [2014-03-08 06:14:19,010] [Preprocessor.java:241] [main] Processing chromosome scaffold1435 Processing chromosome scaffold1435 INFO [2014-03-08 06:14:19,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1436 Processing chromosome scaffold1436 INFO [2014-03-08 06:14:19,052] [Preprocessor.java:241] [main] Processing chromosome scaffold1437 Processing chromosome scaffold1437 INFO [2014-03-08 06:14:19,101] [Preprocessor.java:241] [main] Processing chromosome scaffold1438 Processing chromosome scaffold1438 INFO [2014-03-08 06:14:19,130] [Preprocessor.java:241] [main] Processing chromosome scaffold1439 Processing chromosome scaffold1439 INFO [2014-03-08 06:14:19,151] [Preprocessor.java:241] [main] Processing chromosome scaffold144 Processing chromosome scaffold144 INFO [2014-03-08 06:14:19,259] [Preprocessor.java:241] [main] Processing chromosome scaffold1440 Processing chromosome scaffold1440 INFO [2014-03-08 06:14:19,280] [Preprocessor.java:241] [main] Processing chromosome scaffold1441 Processing chromosome scaffold1441 INFO [2014-03-08 06:14:19,314] [Preprocessor.java:241] [main] Processing chromosome scaffold1442 Processing chromosome scaffold1442 INFO [2014-03-08 06:14:19,340] [Preprocessor.java:241] [main] Processing chromosome scaffold1443 Processing chromosome scaffold1443 INFO [2014-03-08 06:14:19,348] [Preprocessor.java:241] [main] Processing chromosome scaffold1445 Processing chromosome scaffold1445 INFO [2014-03-08 06:14:19,395] [Preprocessor.java:241] [main] Processing chromosome scaffold1446 Processing chromosome scaffold1446 INFO [2014-03-08 06:14:19,436] [Preprocessor.java:241] [main] Processing chromosome scaffold1447 Processing chromosome scaffold1447 INFO [2014-03-08 06:14:19,502] [Preprocessor.java:241] [main] Processing chromosome scaffold1448 Processing chromosome scaffold1448 INFO [2014-03-08 06:14:19,541] [Preprocessor.java:241] [main] Processing chromosome scaffold1449 Processing chromosome scaffold1449 INFO [2014-03-08 06:14:19,584] [Preprocessor.java:241] [main] Processing chromosome scaffold145 Processing chromosome scaffold145 INFO [2014-03-08 06:14:19,704] [Preprocessor.java:241] [main] Processing chromosome scaffold1450 Processing chromosome scaffold1450 INFO [2014-03-08 06:14:19,720] [Preprocessor.java:241] [main] Processing chromosome scaffold1451 Processing chromosome scaffold1451 INFO [2014-03-08 06:14:19,756] [Preprocessor.java:241] [main] Processing chromosome scaffold1452 Processing chromosome scaffold1452 INFO [2014-03-08 06:14:19,807] [Preprocessor.java:241] [main] Processing chromosome scaffold1453 Processing chromosome scaffold1453 INFO [2014-03-08 06:14:19,815] [Preprocessor.java:241] [main] Processing chromosome scaffold1454 Processing chromosome scaffold1454 INFO [2014-03-08 06:14:19,834] [Preprocessor.java:241] [main] Processing chromosome scaffold1455 Processing chromosome scaffold1455 INFO [2014-03-08 06:14:19,875] [Preprocessor.java:241] [main] Processing chromosome scaffold1456 Processing chromosome scaffold1456 INFO [2014-03-08 06:14:19,898] [Preprocessor.java:241] [main] Processing chromosome scaffold1458 Processing chromosome scaffold1458 INFO [2014-03-08 06:14:19,922] [Preprocessor.java:241] [main] Processing chromosome scaffold1459 Processing chromosome scaffold1459 INFO [2014-03-08 06:14:19,985] [Preprocessor.java:241] [main] Processing chromosome scaffold146 Processing chromosome scaffold146 INFO [2014-03-08 06:14:20,168] [Preprocessor.java:241] [main] Processing chromosome scaffold1460 Processing chromosome scaffold1460 INFO [2014-03-08 06:14:20,187] [Preprocessor.java:241] [main] Processing chromosome scaffold1461 Processing chromosome scaffold1461 INFO [2014-03-08 06:14:20,213] [Preprocessor.java:241] [main] Processing chromosome scaffold1462 Processing chromosome scaffold1462 INFO [2014-03-08 06:14:20,282] [Preprocessor.java:241] [main] Processing chromosome scaffold1463 Processing chromosome scaffold1463 INFO [2014-03-08 06:14:20,303] [Preprocessor.java:241] [main] Processing chromosome scaffold1464 Processing chromosome scaffold1464 INFO [2014-03-08 06:14:20,329] [Preprocessor.java:241] [main] Processing chromosome scaffold1466 Processing chromosome scaffold1466 INFO [2014-03-08 06:14:20,369] [Preprocessor.java:241] [main] Processing chromosome scaffold1467 Processing chromosome scaffold1467 INFO [2014-03-08 06:14:20,449] [Preprocessor.java:241] [main] Processing chromosome scaffold1468 Processing chromosome scaffold1468 INFO [2014-03-08 06:14:20,512] [Preprocessor.java:241] [main] Processing chromosome scaffold1469 Processing chromosome scaffold1469 INFO [2014-03-08 06:14:20,623] [Preprocessor.java:241] [main] Processing chromosome scaffold1470 Processing chromosome scaffold1470 INFO [2014-03-08 06:14:20,653] [Preprocessor.java:241] [main] Processing chromosome scaffold1471 Processing chromosome scaffold1471 INFO [2014-03-08 06:14:20,668] [Preprocessor.java:241] [main] Processing chromosome scaffold1472 Processing chromosome scaffold1472 INFO [2014-03-08 06:14:20,698] [Preprocessor.java:241] [main] Processing chromosome scaffold1473 Processing chromosome scaffold1473 INFO [2014-03-08 06:14:20,714] [Preprocessor.java:241] [main] Processing chromosome scaffold1474 Processing chromosome scaffold1474 INFO [2014-03-08 06:14:20,721] [Preprocessor.java:241] [main] Processing chromosome scaffold1475 Processing chromosome scaffold1475 INFO [2014-03-08 06:14:20,765] [Preprocessor.java:241] [main] Processing chromosome scaffold1476 Processing chromosome scaffold1476 INFO [2014-03-08 06:14:20,821] [Preprocessor.java:241] [main] Processing chromosome scaffold1477 Processing chromosome scaffold1477 INFO [2014-03-08 06:14:20,840] [Preprocessor.java:241] [main] Processing chromosome scaffold1478 Processing chromosome scaffold1478 INFO [2014-03-08 06:14:20,856] [Preprocessor.java:241] [main] Processing chromosome scaffold148 Processing chromosome scaffold148 INFO [2014-03-08 06:14:20,892] [Preprocessor.java:241] [main] Processing chromosome scaffold1480 Processing chromosome scaffold1480 INFO [2014-03-08 06:14:20,919] [Preprocessor.java:241] [main] Processing chromosome scaffold1481 Processing chromosome scaffold1481 INFO [2014-03-08 06:14:20,952] [Preprocessor.java:241] [main] Processing chromosome scaffold1483 Processing chromosome scaffold1483 INFO [2014-03-08 06:14:20,965] [Preprocessor.java:241] [main] Processing chromosome scaffold1484 Processing chromosome scaffold1484 .INFO [2014-03-08 06:14:21,016] [Preprocessor.java:241] [main] Processing chromosome scaffold1485 Processing chromosome scaffold1485 INFO [2014-03-08 06:14:21,056] [Preprocessor.java:241] [main] Processing chromosome scaffold1486 Processing chromosome scaffold1486 INFO [2014-03-08 06:14:21,066] [Preprocessor.java:241] [main] Processing chromosome scaffold1488 Processing chromosome scaffold1488 INFO [2014-03-08 06:14:21,100] [Preprocessor.java:241] [main] Processing chromosome scaffold1489 Processing chromosome scaffold1489 INFO [2014-03-08 06:14:21,137] [Preprocessor.java:241] [main] Processing chromosome scaffold149 Processing chromosome scaffold149 INFO [2014-03-08 06:14:21,274] [Preprocessor.java:241] [main] Processing chromosome scaffold1490 Processing chromosome scaffold1490 INFO [2014-03-08 06:14:21,381] [Preprocessor.java:241] [main] Processing chromosome scaffold1491 Processing chromosome scaffold1491 INFO [2014-03-08 06:14:21,444] [Preprocessor.java:241] [main] Processing chromosome scaffold1492 Processing chromosome scaffold1492 INFO [2014-03-08 06:14:21,552] [Preprocessor.java:241] [main] Processing chromosome scaffold1493 Processing chromosome scaffold1493 INFO [2014-03-08 06:14:21,609] [Preprocessor.java:241] [main] Processing chromosome scaffold1494 Processing chromosome scaffold1494 INFO [2014-03-08 06:14:21,653] [Preprocessor.java:241] [main] Processing chromosome scaffold1495 Processing chromosome scaffold1495 INFO [2014-03-08 06:14:21,696] [Preprocessor.java:241] [main] Processing chromosome scaffold1496 Processing chromosome scaffold1496 INFO [2014-03-08 06:14:21,724] [Preprocessor.java:241] [main] Processing chromosome scaffold1497 Processing chromosome scaffold1497 INFO [2014-03-08 06:14:21,776] [Preprocessor.java:241] [main] Processing chromosome scaffold1498 Processing chromosome scaffold1498 INFO [2014-03-08 06:14:21,808] [Preprocessor.java:241] [main] Processing chromosome scaffold1499 Processing chromosome scaffold1499 INFO [2014-03-08 06:14:21,826] [Preprocessor.java:241] [main] Processing chromosome scaffold15 Processing chromosome scaffold15 INFO [2014-03-08 06:14:21,832] [Preprocessor.java:241] [main] Processing chromosome scaffold150 Processing chromosome scaffold150 INFO [2014-03-08 06:14:22,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1500 Processing chromosome scaffold1500 INFO [2014-03-08 06:14:22,161] [Preprocessor.java:241] [main] Processing chromosome scaffold1501 Processing chromosome scaffold1501 INFO [2014-03-08 06:14:22,220] [Preprocessor.java:241] [main] Processing chromosome scaffold1502 Processing chromosome scaffold1502 INFO [2014-03-08 06:14:22,256] [Preprocessor.java:241] [main] Processing chromosome scaffold1503 Processing chromosome scaffold1503 INFO [2014-03-08 06:14:22,358] [Preprocessor.java:241] [main] Processing chromosome scaffold1504 Processing chromosome scaffold1504 INFO [2014-03-08 06:14:22,363] [Preprocessor.java:241] [main] Processing chromosome scaffold1505 Processing chromosome scaffold1505 INFO [2014-03-08 06:14:22,390] [Preprocessor.java:241] [main] Processing chromosome scaffold1506 Processing chromosome scaffold1506 INFO [2014-03-08 06:14:22,433] [Preprocessor.java:241] [main] Processing chromosome scaffold1507 Processing chromosome scaffold1507 INFO [2014-03-08 06:14:22,466] [Preprocessor.java:241] [main] Processing chromosome scaffold1508 Processing chromosome scaffold1508 INFO [2014-03-08 06:14:22,543] [Preprocessor.java:241] [main] Processing chromosome scaffold1509 Processing chromosome scaffold1509 INFO [2014-03-08 06:14:22,564] [Preprocessor.java:241] [main] Processing chromosome scaffold1511 Processing chromosome scaffold1511 INFO [2014-03-08 06:14:22,595] [Preprocessor.java:241] [main] Processing chromosome scaffold1512 Processing chromosome scaffold1512 INFO [2014-03-08 06:14:22,725] [Preprocessor.java:241] [main] Processing chromosome scaffold1514 Processing chromosome scaffold1514 INFO [2014-03-08 06:14:22,750] [Preprocessor.java:241] [main] Processing chromosome scaffold1515 Processing chromosome scaffold1515 INFO [2014-03-08 06:14:22,768] [Preprocessor.java:241] [main] Processing chromosome scaffold1516 Processing chromosome scaffold1516 INFO [2014-03-08 06:14:22,791] [Preprocessor.java:241] [main] Processing chromosome scaffold1517 Processing chromosome scaffold1517 INFO [2014-03-08 06:14:22,803] [Preprocessor.java:241] [main] Processing chromosome scaffold1518 Processing chromosome scaffold1518 INFO [2014-03-08 06:14:22,917] [Preprocessor.java:241] [main] Processing chromosome scaffold1519 Processing chromosome scaffold1519 INFO [2014-03-08 06:14:22,938] [Preprocessor.java:241] [main] Processing chromosome scaffold152 Processing chromosome scaffold152 INFO [2014-03-08 06:14:22,973] [Preprocessor.java:241] [main] Processing chromosome scaffold1520 Processing chromosome scaffold1520 INFO [2014-03-08 06:14:23,100] [Preprocessor.java:241] [main] Processing chromosome scaffold1521 Processing chromosome scaffold1521 INFO [2014-03-08 06:14:23,213] [Preprocessor.java:241] [main] Processing chromosome scaffold1522 Processing chromosome scaffold1522 INFO [2014-03-08 06:14:23,269] [Preprocessor.java:241] [main] Processing chromosome scaffold1524 Processing chromosome scaffold1524 INFO [2014-03-08 06:14:23,334] [Preprocessor.java:241] [main] Processing chromosome scaffold1525 Processing chromosome scaffold1525 INFO [2014-03-08 06:14:23,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1526 Processing chromosome scaffold1526 INFO [2014-03-08 06:14:23,420] [Preprocessor.java:241] [main] Processing chromosome scaffold1527 Processing chromosome scaffold1527 INFO [2014-03-08 06:14:23,468] [Preprocessor.java:241] [main] Processing chromosome scaffold1528 Processing chromosome scaffold1528 INFO [2014-03-08 06:14:23,554] [Preprocessor.java:241] [main] Processing chromosome scaffold1529 Processing chromosome scaffold1529 INFO [2014-03-08 06:14:23,599] [Preprocessor.java:241] [main] Processing chromosome scaffold1530 Processing chromosome scaffold1530 INFO [2014-03-08 06:14:23,619] [Preprocessor.java:241] [main] Processing chromosome scaffold1531 Processing chromosome scaffold1531 INFO [2014-03-08 06:14:23,635] [Preprocessor.java:241] [main] Processing chromosome scaffold1532 Processing chromosome scaffold1532 INFO [2014-03-08 06:14:23,815] [Preprocessor.java:241] [main] Processing chromosome scaffold1533 Processing chromosome scaffold1533 INFO [2014-03-08 06:14:23,925] [Preprocessor.java:241] [main] Processing chromosome scaffold1534 Processing chromosome scaffold1534 INFO [2014-03-08 06:14:23,944] [Preprocessor.java:241] [main] Processing chromosome scaffold1535 Processing chromosome scaffold1535 INFO [2014-03-08 06:14:23,964] [Preprocessor.java:241] [main] Processing chromosome scaffold1536 Processing chromosome scaffold1536 INFO [2014-03-08 06:14:23,996] [Preprocessor.java:241] [main] Processing chromosome scaffold1537 Processing chromosome scaffold1537 INFO [2014-03-08 06:14:24,013] [Preprocessor.java:241] [main] Processing chromosome scaffold1538 Processing chromosome scaffold1538 INFO [2014-03-08 06:14:24,023] [Preprocessor.java:241] [main] Processing chromosome scaffold1539 Processing chromosome scaffold1539 INFO [2014-03-08 06:14:24,069] [Preprocessor.java:241] [main] Processing chromosome scaffold154 Processing chromosome scaffold154 INFO [2014-03-08 06:14:24,141] [Preprocessor.java:241] [main] Processing chromosome scaffold1540 Processing chromosome scaffold1540 INFO [2014-03-08 06:14:24,151] [Preprocessor.java:241] [main] Processing chromosome scaffold1541 Processing chromosome scaffold1541 INFO [2014-03-08 06:14:24,241] [Preprocessor.java:241] [main] Processing chromosome scaffold1542 Processing chromosome scaffold1542 INFO [2014-03-08 06:14:24,243] [Preprocessor.java:241] [main] Processing chromosome scaffold1543 Processing chromosome scaffold1543 INFO [2014-03-08 06:14:24,266] [Preprocessor.java:241] [main] Processing chromosome scaffold1544 Processing chromosome scaffold1544 INFO [2014-03-08 06:14:24,297] [Preprocessor.java:241] [main] Processing chromosome scaffold1546 Processing chromosome scaffold1546 INFO [2014-03-08 06:14:24,348] [Preprocessor.java:241] [main] Processing chromosome scaffold1547 Processing chromosome scaffold1547 INFO [2014-03-08 06:14:24,358] [Preprocessor.java:241] [main] Processing chromosome scaffold1548 Processing chromosome scaffold1548 INFO [2014-03-08 06:14:24,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1549 Processing chromosome scaffold1549 INFO [2014-03-08 06:14:24,392] [Preprocessor.java:241] [main] Processing chromosome scaffold155 Processing chromosome scaffold155 INFO [2014-03-08 06:14:24,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1551 Processing chromosome scaffold1551 INFO [2014-03-08 06:14:24,466] [Preprocessor.java:241] [main] Processing chromosome scaffold1552 Processing chromosome scaffold1552 INFO [2014-03-08 06:14:24,471] [Preprocessor.java:241] [main] Processing chromosome scaffold1553 Processing chromosome scaffold1553 INFO [2014-03-08 06:14:24,504] [Preprocessor.java:241] [main] Processing chromosome scaffold1554 Processing chromosome scaffold1554 INFO [2014-03-08 06:14:24,552] [Preprocessor.java:241] [main] Processing chromosome scaffold1555 Processing chromosome scaffold1555 INFO [2014-03-08 06:14:24,559] [Preprocessor.java:241] [main] Processing chromosome scaffold1556 Processing chromosome scaffold1556 INFO [2014-03-08 06:14:24,601] [Preprocessor.java:241] [main] Processing chromosome scaffold1557 Processing chromosome scaffold1557 INFO [2014-03-08 06:14:24,607] [Preprocessor.java:241] [main] Processing chromosome scaffold1558 Processing chromosome scaffold1558 INFO [2014-03-08 06:14:24,632] [Preprocessor.java:241] [main] Processing chromosome scaffold1559 Processing chromosome scaffold1559 INFO [2014-03-08 06:14:24,675] [Preprocessor.java:241] [main] Processing chromosome scaffold156 Processing chromosome scaffold156 .INFO [2014-03-08 06:14:24,898] [Preprocessor.java:241] [main] Processing chromosome scaffold1560 Processing chromosome scaffold1560 INFO [2014-03-08 06:14:24,950] [Preprocessor.java:241] [main] Processing chromosome scaffold1561 Processing chromosome scaffold1561 INFO [2014-03-08 06:14:24,994] [Preprocessor.java:241] [main] Processing chromosome scaffold1562 Processing chromosome scaffold1562 INFO [2014-03-08 06:14:25,050] [Preprocessor.java:241] [main] Processing chromosome scaffold1563 Processing chromosome scaffold1563 INFO [2014-03-08 06:14:25,070] [Preprocessor.java:241] [main] Processing chromosome scaffold1564 Processing chromosome scaffold1564 INFO [2014-03-08 06:14:25,110] [Preprocessor.java:241] [main] Processing chromosome scaffold1565 Processing chromosome scaffold1565 INFO [2014-03-08 06:14:25,114] [Preprocessor.java:241] [main] Processing chromosome scaffold1566 Processing chromosome scaffold1566 INFO [2014-03-08 06:14:25,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1567 Processing chromosome scaffold1567 INFO [2014-03-08 06:14:25,155] [Preprocessor.java:241] [main] Processing chromosome scaffold1569 Processing chromosome scaffold1569 INFO [2014-03-08 06:14:25,277] [Preprocessor.java:241] [main] Processing chromosome scaffold157 Processing chromosome scaffold157 INFO [2014-03-08 06:14:25,499] [Preprocessor.java:241] [main] Processing chromosome scaffold1570 Processing chromosome scaffold1570 INFO [2014-03-08 06:14:25,527] [Preprocessor.java:241] [main] Processing chromosome scaffold1571 Processing chromosome scaffold1571 INFO [2014-03-08 06:14:25,591] [Preprocessor.java:241] [main] Processing chromosome scaffold1572 Processing chromosome scaffold1572 INFO [2014-03-08 06:14:25,653] [Preprocessor.java:241] [main] Processing chromosome scaffold1573 Processing chromosome scaffold1573 INFO [2014-03-08 06:14:25,660] [Preprocessor.java:241] [main] Processing chromosome scaffold1574 Processing chromosome scaffold1574 INFO [2014-03-08 06:14:25,729] [Preprocessor.java:241] [main] Processing chromosome scaffold1575 Processing chromosome scaffold1575 INFO [2014-03-08 06:14:25,781] [Preprocessor.java:241] [main] Processing chromosome scaffold1576 Processing chromosome scaffold1576 INFO [2014-03-08 06:14:25,804] [Preprocessor.java:241] [main] Processing chromosome scaffold1577 Processing chromosome scaffold1577 INFO [2014-03-08 06:14:25,837] [Preprocessor.java:241] [main] Processing chromosome scaffold1578 Processing chromosome scaffold1578 INFO [2014-03-08 06:14:25,906] [Preprocessor.java:241] [main] Processing chromosome scaffold1579 Processing chromosome scaffold1579 INFO [2014-03-08 06:14:26,035] [Preprocessor.java:241] [main] Processing chromosome scaffold1580 Processing chromosome scaffold1580 INFO [2014-03-08 06:14:26,046] [Preprocessor.java:241] [main] Processing chromosome scaffold1581 Processing chromosome scaffold1581 INFO [2014-03-08 06:14:26,088] [Preprocessor.java:241] [main] Processing chromosome scaffold1582 Processing chromosome scaffold1582 INFO [2014-03-08 06:14:26,108] [Preprocessor.java:241] [main] Processing chromosome scaffold1583 Processing chromosome scaffold1583 INFO [2014-03-08 06:14:26,319] [Preprocessor.java:241] [main] Processing chromosome scaffold1584 Processing chromosome scaffold1584 INFO [2014-03-08 06:14:26,413] [Preprocessor.java:241] [main] Processing chromosome scaffold1585 Processing chromosome scaffold1585 INFO [2014-03-08 06:14:26,470] [Preprocessor.java:241] [main] Processing chromosome scaffold1586 Processing chromosome scaffold1586 INFO [2014-03-08 06:14:26,492] [Preprocessor.java:241] [main] Processing chromosome scaffold1587 Processing chromosome scaffold1587 INFO [2014-03-08 06:14:26,496] [Preprocessor.java:241] [main] Processing chromosome scaffold1588 Processing chromosome scaffold1588 INFO [2014-03-08 06:14:26,545] [Preprocessor.java:241] [main] Processing chromosome scaffold1589 Processing chromosome scaffold1589 INFO [2014-03-08 06:14:26,722] [Preprocessor.java:241] [main] Processing chromosome scaffold1590 Processing chromosome scaffold1590 INFO [2014-03-08 06:14:26,743] [Preprocessor.java:241] [main] Processing chromosome scaffold1591 Processing chromosome scaffold1591 INFO [2014-03-08 06:14:26,756] [Preprocessor.java:241] [main] Processing chromosome scaffold1592 Processing chromosome scaffold1592 INFO [2014-03-08 06:14:26,802] [Preprocessor.java:241] [main] Processing chromosome scaffold1593 Processing chromosome scaffold1593 INFO [2014-03-08 06:14:26,833] [Preprocessor.java:241] [main] Processing chromosome scaffold1595 Processing chromosome scaffold1595 INFO [2014-03-08 06:14:26,846] [Preprocessor.java:241] [main] Processing chromosome scaffold1596 Processing chromosome scaffold1596 INFO [2014-03-08 06:14:26,848] [Preprocessor.java:241] [main] Processing chromosome scaffold1597 Processing chromosome scaffold1597 INFO [2014-03-08 06:14:26,923] [Preprocessor.java:241] [main] Processing chromosome scaffold1598 Processing chromosome scaffold1598 INFO [2014-03-08 06:14:26,961] [Preprocessor.java:241] [main] Processing chromosome scaffold1599 Processing chromosome scaffold1599 INFO [2014-03-08 06:14:27,150] [Preprocessor.java:241] [main] Processing chromosome scaffold160 Processing chromosome scaffold160 INFO [2014-03-08 06:14:27,248] [Preprocessor.java:241] [main] Processing chromosome scaffold1600 Processing chromosome scaffold1600 INFO [2014-03-08 06:14:27,337] [Preprocessor.java:241] [main] Processing chromosome scaffold1601 Processing chromosome scaffold1601 INFO [2014-03-08 06:14:27,428] [Preprocessor.java:241] [main] Processing chromosome scaffold1603 Processing chromosome scaffold1603 INFO [2014-03-08 06:14:27,525] [Preprocessor.java:241] [main] Processing chromosome scaffold1604 Processing chromosome scaffold1604 INFO [2014-03-08 06:14:27,528] [Preprocessor.java:241] [main] Processing chromosome scaffold1605 Processing chromosome scaffold1605 INFO [2014-03-08 06:14:27,805] [Preprocessor.java:241] [main] Processing chromosome scaffold1606 Processing chromosome scaffold1606 INFO [2014-03-08 06:14:27,829] [Preprocessor.java:241] [main] Processing chromosome scaffold1607 Processing chromosome scaffold1607 INFO [2014-03-08 06:14:27,853] [Preprocessor.java:241] [main] Processing chromosome scaffold1608 Processing chromosome scaffold1608 10.0% INFO [2014-03-08 06:14:27,927] [Preprocessor.java:241] [main] Processing chromosome scaffold1609 Processing chromosome scaffold1609 INFO [2014-03-08 06:14:27,956] [Preprocessor.java:241] [main] Processing chromosome scaffold161 Processing chromosome scaffold161 INFO [2014-03-08 06:14:28,092] [Preprocessor.java:241] [main] Processing chromosome scaffold1610 Processing chromosome scaffold1610 INFO [2014-03-08 06:14:28,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1611 Processing chromosome scaffold1611 INFO [2014-03-08 06:14:28,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1612 Processing chromosome scaffold1612 INFO [2014-03-08 06:14:28,281] [Preprocessor.java:241] [main] Processing chromosome scaffold1613 Processing chromosome scaffold1613 INFO [2014-03-08 06:14:28,309] [Preprocessor.java:241] [main] Processing chromosome scaffold1614 Processing chromosome scaffold1614 INFO [2014-03-08 06:14:28,323] [Preprocessor.java:241] [main] Processing chromosome scaffold1615 Processing chromosome scaffold1615 INFO [2014-03-08 06:14:28,336] [Preprocessor.java:241] [main] Processing chromosome scaffold1616 Processing chromosome scaffold1616 INFO [2014-03-08 06:14:28,364] [Preprocessor.java:241] [main] Processing chromosome scaffold1617 Processing chromosome scaffold1617 INFO [2014-03-08 06:14:28,388] [Preprocessor.java:241] [main] Processing chromosome scaffold1618 Processing chromosome scaffold1618 INFO [2014-03-08 06:14:28,398] [Preprocessor.java:241] [main] Processing chromosome scaffold1619 Processing chromosome scaffold1619 INFO [2014-03-08 06:14:28,423] [Preprocessor.java:241] [main] Processing chromosome scaffold162 Processing chromosome scaffold162 INFO [2014-03-08 06:14:28,500] [Preprocessor.java:241] [main] Processing chromosome scaffold1620 Processing chromosome scaffold1620 INFO [2014-03-08 06:14:28,525] [Preprocessor.java:241] [main] Processing chromosome scaffold1621 Processing chromosome scaffold1621 INFO [2014-03-08 06:14:28,530] [Preprocessor.java:241] [main] Processing chromosome scaffold1622 Processing chromosome scaffold1622 INFO [2014-03-08 06:14:28,533] [Preprocessor.java:241] [main] Processing chromosome scaffold1623 Processing chromosome scaffold1623 INFO [2014-03-08 06:14:28,555] [Preprocessor.java:241] [main] Processing chromosome scaffold1624 Processing chromosome scaffold1624 INFO [2014-03-08 06:14:28,570] [Preprocessor.java:241] [main] Processing chromosome scaffold1625 Processing chromosome scaffold1625 INFO [2014-03-08 06:14:28,602] [Preprocessor.java:241] [main] Processing chromosome scaffold1626 Processing chromosome scaffold1626 INFO [2014-03-08 06:14:28,617] [Preprocessor.java:241] [main] Processing chromosome scaffold1627 Processing chromosome scaffold1627 INFO [2014-03-08 06:14:28,663] [Preprocessor.java:241] [main] Processing chromosome scaffold1628 Processing chromosome scaffold1628 INFO [2014-03-08 06:14:28,668] [Preprocessor.java:241] [main] Processing chromosome scaffold1629 Processing chromosome scaffold1629 INFO [2014-03-08 06:14:28,682] [Preprocessor.java:241] [main] Processing chromosome scaffold163 Processing chromosome scaffold163 INFO [2014-03-08 06:14:28,832] [Preprocessor.java:241] [main] Processing chromosome scaffold1630 Processing chromosome scaffold1630 INFO [2014-03-08 06:14:28,884] [Preprocessor.java:241] [main] Processing chromosome scaffold1631 Processing chromosome scaffold1631 INFO [2014-03-08 06:14:28,914] [Preprocessor.java:241] [main] Processing chromosome scaffold1632 Processing chromosome scaffold1632 INFO [2014-03-08 06:14:28,947] [Preprocessor.java:241] [main] Processing chromosome scaffold1633 Processing chromosome scaffold1633 INFO [2014-03-08 06:14:28,970] [Preprocessor.java:241] [main] Processing chromosome scaffold1634 Processing chromosome scaffold1634 INFO [2014-03-08 06:14:29,014] [Preprocessor.java:241] [main] Processing chromosome scaffold1635 Processing chromosome scaffold1635 INFO [2014-03-08 06:14:29,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1636 Processing chromosome scaffold1636 INFO [2014-03-08 06:14:29,048] [Preprocessor.java:241] [main] Processing chromosome scaffold1637 Processing chromosome scaffold1637 INFO [2014-03-08 06:14:29,096] [Preprocessor.java:241] [main] Processing chromosome scaffold1638 Processing chromosome scaffold1638 INFO [2014-03-08 06:14:29,126] [Preprocessor.java:241] [main] Processing chromosome scaffold1639 Processing chromosome scaffold1639 INFO [2014-03-08 06:14:29,147] [Preprocessor.java:241] [main] Processing chromosome scaffold164 Processing chromosome scaffold164 INFO [2014-03-08 06:14:29,262] [Preprocessor.java:241] [main] Processing chromosome scaffold1640 Processing chromosome scaffold1640 INFO [2014-03-08 06:14:29,269] [Preprocessor.java:241] [main] Processing chromosome scaffold1641 Processing chromosome scaffold1641 INFO [2014-03-08 06:14:29,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1642 Processing chromosome scaffold1642 INFO [2014-03-08 06:14:29,336] [Preprocessor.java:241] [main] Processing chromosome scaffold1643 Processing chromosome scaffold1643 INFO [2014-03-08 06:14:29,400] [Preprocessor.java:241] [main] Processing chromosome scaffold1644 Processing chromosome scaffold1644 INFO [2014-03-08 06:14:29,434] [Preprocessor.java:241] [main] Processing chromosome scaffold1645 Processing chromosome scaffold1645 INFO [2014-03-08 06:14:29,487] [Preprocessor.java:241] [main] Processing chromosome scaffold1646 Processing chromosome scaffold1646 INFO [2014-03-08 06:14:29,516] [Preprocessor.java:241] [main] Processing chromosome scaffold1647 Processing chromosome scaffold1647 INFO [2014-03-08 06:14:29,534] [Preprocessor.java:241] [main] Processing chromosome scaffold1648 Processing chromosome scaffold1648 INFO [2014-03-08 06:14:29,542] [Preprocessor.java:241] [main] Processing chromosome scaffold165 Processing chromosome scaffold165 INFO [2014-03-08 06:14:29,639] [Preprocessor.java:241] [main] Processing chromosome scaffold1650 Processing chromosome scaffold1650 INFO [2014-03-08 06:14:29,764] [Preprocessor.java:241] [main] Processing chromosome scaffold1651 Processing chromosome scaffold1651 INFO [2014-03-08 06:14:29,804] [Preprocessor.java:241] [main] Processing chromosome scaffold1652 Processing chromosome scaffold1652 INFO [2014-03-08 06:14:29,918] [Preprocessor.java:241] [main] Processing chromosome scaffold1653 Processing chromosome scaffold1653 INFO [2014-03-08 06:14:29,943] [Preprocessor.java:241] [main] Processing chromosome scaffold1654 Processing chromosome scaffold1654 INFO [2014-03-08 06:14:29,972] [Preprocessor.java:241] [main] Processing chromosome scaffold1655 Processing chromosome scaffold1655 INFO [2014-03-08 06:14:29,982] [Preprocessor.java:241] [main] Processing chromosome scaffold1656 Processing chromosome scaffold1656 INFO [2014-03-08 06:14:29,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1657 Processing chromosome scaffold1657 INFO [2014-03-08 06:14:30,008] [Preprocessor.java:241] [main] Processing chromosome scaffold1658 Processing chromosome scaffold1658 INFO [2014-03-08 06:14:30,033] [Preprocessor.java:241] [main] Processing chromosome scaffold1659 Processing chromosome scaffold1659 INFO [2014-03-08 06:14:30,042] [Preprocessor.java:241] [main] Processing chromosome scaffold1660 Processing chromosome scaffold1660 INFO [2014-03-08 06:14:30,062] [Preprocessor.java:241] [main] Processing chromosome scaffold1661 Processing chromosome scaffold1661 INFO [2014-03-08 06:14:30,075] [Preprocessor.java:241] [main] Processing chromosome scaffold1662 Processing chromosome scaffold1662 INFO [2014-03-08 06:14:30,143] [Preprocessor.java:241] [main] Processing chromosome scaffold1663 Processing chromosome scaffold1663 INFO [2014-03-08 06:14:30,176] [Preprocessor.java:241] [main] Processing chromosome scaffold1664 Processing chromosome scaffold1664 INFO [2014-03-08 06:14:30,198] [Preprocessor.java:241] [main] Processing chromosome scaffold1665 Processing chromosome scaffold1665 INFO [2014-03-08 06:14:30,298] [Preprocessor.java:241] [main] Processing chromosome scaffold1666 Processing chromosome scaffold1666 INFO [2014-03-08 06:14:30,303] [Preprocessor.java:241] [main] Processing chromosome scaffold1667 Processing chromosome scaffold1667 INFO [2014-03-08 06:14:30,362] [Preprocessor.java:241] [main] Processing chromosome scaffold1668 Processing chromosome scaffold1668 INFO [2014-03-08 06:14:30,366] [Preprocessor.java:241] [main] Processing chromosome scaffold1669 Processing chromosome scaffold1669 INFO [2014-03-08 06:14:30,383] [Preprocessor.java:241] [main] Processing chromosome scaffold167 Processing chromosome scaffold167 INFO [2014-03-08 06:14:30,388] [Preprocessor.java:241] [main] Processing chromosome scaffold1670 Processing chromosome scaffold1670 INFO [2014-03-08 06:14:30,517] [Preprocessor.java:241] [main] Processing chromosome scaffold1671 Processing chromosome scaffold1671 INFO [2014-03-08 06:14:30,604] [Preprocessor.java:241] [main] Processing chromosome scaffold1672 Processing chromosome scaffold1672 INFO [2014-03-08 06:14:30,636] [Preprocessor.java:241] [main] Processing chromosome scaffold1673 Processing chromosome scaffold1673 INFO [2014-03-08 06:14:30,723] [Preprocessor.java:241] [main] Processing chromosome scaffold1674 Processing chromosome scaffold1674 INFO [2014-03-08 06:14:30,746] [Preprocessor.java:241] [main] Processing chromosome scaffold1675 Processing chromosome scaffold1675 INFO [2014-03-08 06:14:30,755] [Preprocessor.java:241] [main] Processing chromosome scaffold1676 Processing chromosome scaffold1676 INFO [2014-03-08 06:14:30,772] [Preprocessor.java:241] [main] Processing chromosome scaffold1678 Processing chromosome scaffold1678 INFO [2014-03-08 06:14:30,846] [Preprocessor.java:241] [main] Processing chromosome scaffold1679 Processing chromosome scaffold1679 INFO [2014-03-08 06:14:30,867] [Preprocessor.java:241] [main] Processing chromosome scaffold168 Processing chromosome scaffold168 INFO [2014-03-08 06:14:31,046] [Preprocessor.java:241] [main] Processing chromosome scaffold1680 Processing chromosome scaffold1680 INFO [2014-03-08 06:14:31,097] [Preprocessor.java:241] [main] Processing chromosome scaffold1681 Processing chromosome scaffold1681 INFO [2014-03-08 06:14:31,102] [Preprocessor.java:241] [main] Processing chromosome scaffold1682 Processing chromosome scaffold1682 INFO [2014-03-08 06:14:31,140] [Preprocessor.java:241] [main] Processing chromosome scaffold1683 Processing chromosome scaffold1683 INFO [2014-03-08 06:14:31,154] [Preprocessor.java:241] [main] Processing chromosome scaffold1684 Processing chromosome scaffold1684 INFO [2014-03-08 06:14:31,189] [Preprocessor.java:241] [main] Processing chromosome scaffold1685 Processing chromosome scaffold1685 INFO [2014-03-08 06:14:31,211] [Preprocessor.java:241] [main] Processing chromosome scaffold1686 Processing chromosome scaffold1686 INFO [2014-03-08 06:14:31,226] [Preprocessor.java:241] [main] Processing chromosome scaffold1687 Processing chromosome scaffold1687 INFO [2014-03-08 06:14:31,280] [Preprocessor.java:241] [main] Processing chromosome scaffold1688 Processing chromosome scaffold1688 INFO [2014-03-08 06:14:31,352] [Preprocessor.java:241] [main] Processing chromosome scaffold1689 Processing chromosome scaffold1689 INFO [2014-03-08 06:14:31,358] [Preprocessor.java:241] [main] Processing chromosome scaffold169 Processing chromosome scaffold169 INFO [2014-03-08 06:14:31,463] [Preprocessor.java:241] [main] Processing chromosome scaffold1690 Processing chromosome scaffold1690 INFO [2014-03-08 06:14:31,502] [Preprocessor.java:241] [main] Processing chromosome scaffold1691 Processing chromosome scaffold1691 INFO [2014-03-08 06:14:31,506] [Preprocessor.java:241] [main] Processing chromosome scaffold1692 Processing chromosome scaffold1692 INFO [2014-03-08 06:14:31,535] [Preprocessor.java:241] [main] Processing chromosome scaffold1693 Processing chromosome scaffold1693 INFO [2014-03-08 06:14:31,553] [Preprocessor.java:241] [main] Processing chromosome scaffold1694 Processing chromosome scaffold1694 INFO [2014-03-08 06:14:31,563] [Preprocessor.java:241] [main] Processing chromosome scaffold1695 Processing chromosome scaffold1695 INFO [2014-03-08 06:14:31,584] [Preprocessor.java:241] [main] Processing chromosome scaffold1696 Processing chromosome scaffold1696 INFO [2014-03-08 06:14:31,610] [Preprocessor.java:241] [main] Processing chromosome scaffold1697 Processing chromosome scaffold1697 INFO [2014-03-08 06:14:31,646] [Preprocessor.java:241] [main] Processing chromosome scaffold1698 Processing chromosome scaffold1698 INFO [2014-03-08 06:14:31,708] [Preprocessor.java:241] [main] Processing chromosome scaffold1699 Processing chromosome scaffold1699 INFO [2014-03-08 06:14:31,759] [Preprocessor.java:241] [main] Processing chromosome scaffold17 Processing chromosome scaffold17 INFO [2014-03-08 06:14:31,794] [Preprocessor.java:241] [main] Processing chromosome scaffold170 Processing chromosome scaffold170 INFO [2014-03-08 06:14:31,878] [Preprocessor.java:241] [main] Processing chromosome scaffold1700 Processing chromosome scaffold1700 INFO [2014-03-08 06:14:31,932] [Preprocessor.java:241] [main] Processing chromosome scaffold1701 Processing chromosome scaffold1701 INFO [2014-03-08 06:14:31,942] [Preprocessor.java:241] [main] Processing chromosome scaffold1702 Processing chromosome scaffold1702 INFO [2014-03-08 06:14:31,960] [Preprocessor.java:241] [main] Processing chromosome scaffold1703 Processing chromosome scaffold1703 .INFO [2014-03-08 06:14:32,087] [Preprocessor.java:241] [main] Processing chromosome scaffold1704 Processing chromosome scaffold1704 INFO [2014-03-08 06:14:32,183] [Preprocessor.java:241] [main] Processing chromosome scaffold1705 Processing chromosome scaffold1705 INFO [2014-03-08 06:14:32,219] [Preprocessor.java:241] [main] Processing chromosome scaffold1706 Processing chromosome scaffold1706 INFO [2014-03-08 06:14:32,235] [Preprocessor.java:241] [main] Processing chromosome scaffold1707 Processing chromosome scaffold1707 INFO [2014-03-08 06:14:32,257] [Preprocessor.java:241] [main] Processing chromosome scaffold1708 Processing chromosome scaffold1708 INFO [2014-03-08 06:14:32,285] [Preprocessor.java:241] [main] Processing chromosome scaffold1709 Processing chromosome scaffold1709 INFO [2014-03-08 06:14:32,328] [Preprocessor.java:241] [main] Processing chromosome scaffold1710 Processing chromosome scaffold1710 INFO [2014-03-08 06:14:32,471] [Preprocessor.java:241] [main] Processing chromosome scaffold1711 Processing chromosome scaffold1711 INFO [2014-03-08 06:14:32,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1712 Processing chromosome scaffold1712 INFO [2014-03-08 06:14:32,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1713 Processing chromosome scaffold1713 INFO [2014-03-08 06:14:32,625] [Preprocessor.java:241] [main] Processing chromosome scaffold1714 Processing chromosome scaffold1714 INFO [2014-03-08 06:14:32,674] [Preprocessor.java:241] [main] Processing chromosome scaffold1715 Processing chromosome scaffold1715 INFO [2014-03-08 06:14:32,802] [Preprocessor.java:241] [main] Processing chromosome scaffold1716 Processing chromosome scaffold1716 INFO [2014-03-08 06:14:32,816] [Preprocessor.java:241] [main] Processing chromosome scaffold1717 Processing chromosome scaffold1717 INFO [2014-03-08 06:14:32,875] [Preprocessor.java:241] [main] Processing chromosome scaffold1718 Processing chromosome scaffold1718 INFO [2014-03-08 06:14:32,883] [Preprocessor.java:241] [main] Processing chromosome scaffold1719 Processing chromosome scaffold1719 INFO [2014-03-08 06:14:32,954] [Preprocessor.java:241] [main] Processing chromosome scaffold172 Processing chromosome scaffold172 INFO [2014-03-08 06:14:33,060] [Preprocessor.java:241] [main] Processing chromosome scaffold1720 Processing chromosome scaffold1720 INFO [2014-03-08 06:14:33,168] [Preprocessor.java:241] [main] Processing chromosome scaffold1721 Processing chromosome scaffold1721 INFO [2014-03-08 06:14:33,201] [Preprocessor.java:241] [main] Processing chromosome scaffold1722 Processing chromosome scaffold1722 INFO [2014-03-08 06:14:33,284] [Preprocessor.java:241] [main] Processing chromosome scaffold1723 Processing chromosome scaffold1723 INFO [2014-03-08 06:14:33,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1724 Processing chromosome scaffold1724 INFO [2014-03-08 06:14:33,384] [Preprocessor.java:241] [main] Processing chromosome scaffold1725 Processing chromosome scaffold1725 INFO [2014-03-08 06:14:33,400] [Preprocessor.java:241] [main] Processing chromosome scaffold1726 Processing chromosome scaffold1726 INFO [2014-03-08 06:14:33,520] [Preprocessor.java:241] [main] Processing chromosome scaffold1727 Processing chromosome scaffold1727 INFO [2014-03-08 06:14:33,550] [Preprocessor.java:241] [main] Processing chromosome scaffold1728 Processing chromosome scaffold1728 INFO [2014-03-08 06:14:33,571] [Preprocessor.java:241] [main] Processing chromosome scaffold1729 Processing chromosome scaffold1729 INFO [2014-03-08 06:14:33,628] [Preprocessor.java:241] [main] Processing chromosome scaffold173 Processing chromosome scaffold173 INFO [2014-03-08 06:14:33,671] [Preprocessor.java:241] [main] Processing chromosome scaffold1730 Processing chromosome scaffold1730 INFO [2014-03-08 06:14:33,723] [Preprocessor.java:241] [main] Processing chromosome scaffold1731 Processing chromosome scaffold1731 INFO [2014-03-08 06:14:33,758] [Preprocessor.java:241] [main] Processing chromosome scaffold1732 Processing chromosome scaffold1732 INFO [2014-03-08 06:14:33,768] [Preprocessor.java:241] [main] Processing chromosome scaffold1733 Processing chromosome scaffold1733 INFO [2014-03-08 06:14:33,812] [Preprocessor.java:241] [main] Processing chromosome scaffold1734 Processing chromosome scaffold1734 INFO [2014-03-08 06:14:33,838] [Preprocessor.java:241] [main] Processing chromosome scaffold1735 Processing chromosome scaffold1735 INFO [2014-03-08 06:14:33,910] [Preprocessor.java:241] [main] Processing chromosome scaffold1736 Processing chromosome scaffold1736 INFO [2014-03-08 06:14:34,072] [Preprocessor.java:241] [main] Processing chromosome scaffold1737 Processing chromosome scaffold1737 INFO [2014-03-08 06:14:34,133] [Preprocessor.java:241] [main] Processing chromosome scaffold1738 Processing chromosome scaffold1738 INFO [2014-03-08 06:14:34,206] [Preprocessor.java:241] [main] Processing chromosome scaffold1739 Processing chromosome scaffold1739 INFO [2014-03-08 06:14:34,265] [Preprocessor.java:241] [main] Processing chromosome scaffold174 Processing chromosome scaffold174 INFO [2014-03-08 06:14:34,280] [Preprocessor.java:241] [main] Processing chromosome scaffold1740 Processing chromosome scaffold1740 INFO [2014-03-08 06:14:34,332] [Preprocessor.java:241] [main] Processing chromosome scaffold1741 Processing chromosome scaffold1741 INFO [2014-03-08 06:14:34,449] [Preprocessor.java:241] [main] Processing chromosome scaffold1742 Processing chromosome scaffold1742 INFO [2014-03-08 06:14:34,547] [Preprocessor.java:241] [main] Processing chromosome scaffold1743 Processing chromosome scaffold1743 INFO [2014-03-08 06:14:34,576] [Preprocessor.java:241] [main] Processing chromosome scaffold1745 Processing chromosome scaffold1745 INFO [2014-03-08 06:14:34,596] [Preprocessor.java:241] [main] Processing chromosome scaffold1746 Processing chromosome scaffold1746 INFO [2014-03-08 06:14:34,652] [Preprocessor.java:241] [main] Processing chromosome scaffold1747 Processing chromosome scaffold1747 INFO [2014-03-08 06:14:34,674] [Preprocessor.java:241] [main] Processing chromosome scaffold1748 Processing chromosome scaffold1748 INFO [2014-03-08 06:14:34,697] [Preprocessor.java:241] [main] Processing chromosome scaffold1749 Processing chromosome scaffold1749 INFO [2014-03-08 06:14:34,730] [Preprocessor.java:241] [main] Processing chromosome scaffold175 Processing chromosome scaffold175 INFO [2014-03-08 06:14:34,867] [Preprocessor.java:241] [main] Processing chromosome scaffold1750 Processing chromosome scaffold1750 INFO [2014-03-08 06:14:35,059] [Preprocessor.java:241] [main] Processing chromosome scaffold1751 Processing chromosome scaffold1751 INFO [2014-03-08 06:14:35,124] [Preprocessor.java:241] [main] Processing chromosome scaffold1752 Processing chromosome scaffold1752 INFO [2014-03-08 06:14:35,161] [Preprocessor.java:241] [main] Processing chromosome scaffold1753 Processing chromosome scaffold1753 INFO [2014-03-08 06:14:35,202] [Preprocessor.java:241] [main] Processing chromosome scaffold1754 Processing chromosome scaffold1754 INFO [2014-03-08 06:14:35,225] [Preprocessor.java:241] [main] Processing chromosome scaffold1755 Processing chromosome scaffold1755 INFO [2014-03-08 06:14:35,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1756 Processing chromosome scaffold1756 INFO [2014-03-08 06:14:35,246] [Preprocessor.java:241] [main] Processing chromosome scaffold1757 Processing chromosome scaffold1757 INFO [2014-03-08 06:14:35,284] [Preprocessor.java:241] [main] Processing chromosome scaffold1758 Processing chromosome scaffold1758 INFO [2014-03-08 06:14:35,330] [Preprocessor.java:241] [main] Processing chromosome scaffold1759 Processing chromosome scaffold1759 INFO [2014-03-08 06:14:35,379] [Preprocessor.java:241] [main] Processing chromosome scaffold17598 Processing chromosome scaffold17598 INFO [2014-03-08 06:14:35,425] [Preprocessor.java:241] [main] Processing chromosome scaffold1760 Processing chromosome scaffold1760 INFO [2014-03-08 06:14:35,451] [Preprocessor.java:241] [main] Processing chromosome scaffold17600 Processing chromosome scaffold17600 INFO [2014-03-08 06:14:35,465] [Preprocessor.java:241] [main] Processing chromosome scaffold1761 Processing chromosome scaffold1761 INFO [2014-03-08 06:14:35,494] [Preprocessor.java:241] [main] Processing chromosome scaffold1762 Processing chromosome scaffold1762 INFO [2014-03-08 06:14:35,508] [Preprocessor.java:241] [main] Processing chromosome scaffold1763 Processing chromosome scaffold1763 .INFO [2014-03-08 06:14:35,696] [Preprocessor.java:241] [main] Processing chromosome scaffold1764 Processing chromosome scaffold1764 INFO [2014-03-08 06:14:35,705] [Preprocessor.java:241] [main] Processing chromosome scaffold1765 Processing chromosome scaffold1765 INFO [2014-03-08 06:14:35,717] [Preprocessor.java:241] [main] Processing chromosome scaffold1766 Processing chromosome scaffold1766 INFO [2014-03-08 06:14:35,833] [Preprocessor.java:241] [main] Processing chromosome scaffold1767 Processing chromosome scaffold1767 INFO [2014-03-08 06:14:35,915] [Preprocessor.java:241] [main] Processing chromosome scaffold1768 Processing chromosome scaffold1768 INFO [2014-03-08 06:14:35,943] [Preprocessor.java:241] [main] Processing chromosome scaffold1769 Processing chromosome scaffold1769 INFO [2014-03-08 06:14:36,018] [Preprocessor.java:241] [main] Processing chromosome scaffold177 Processing chromosome scaffold177 INFO [2014-03-08 06:14:36,062] [Preprocessor.java:241] [main] Processing chromosome scaffold1770 Processing chromosome scaffold1770 INFO [2014-03-08 06:14:36,097] [Preprocessor.java:241] [main] Processing chromosome scaffold1771 Processing chromosome scaffold1771 INFO [2014-03-08 06:14:36,144] [Preprocessor.java:241] [main] Processing chromosome scaffold1772 Processing chromosome scaffold1772 INFO [2014-03-08 06:14:36,175] [Preprocessor.java:241] [main] Processing chromosome scaffold1773 Processing chromosome scaffold1773 INFO [2014-03-08 06:14:36,198] [Preprocessor.java:241] [main] Processing chromosome scaffold1774 Processing chromosome scaffold1774 INFO [2014-03-08 06:14:36,264] [Preprocessor.java:241] [main] Processing chromosome scaffold1775 Processing chromosome scaffold1775 INFO [2014-03-08 06:14:36,277] [Preprocessor.java:241] [main] Processing chromosome scaffold1776 Processing chromosome scaffold1776 INFO [2014-03-08 06:14:36,292] [Preprocessor.java:241] [main] Processing chromosome scaffold1777 Processing chromosome scaffold1777 INFO [2014-03-08 06:14:36,308] [Preprocessor.java:241] [main] Processing chromosome scaffold1778 Processing chromosome scaffold1778 INFO [2014-03-08 06:14:36,319] [Preprocessor.java:241] [main] Processing chromosome scaffold1779 Processing chromosome scaffold1779 INFO [2014-03-08 06:14:36,341] [Preprocessor.java:241] [main] Processing chromosome scaffold178 Processing chromosome scaffold178 INFO [2014-03-08 06:14:36,359] [Preprocessor.java:241] [main] Processing chromosome scaffold1780 Processing chromosome scaffold1780 INFO [2014-03-08 06:14:36,456] [Preprocessor.java:241] [main] Processing chromosome scaffold1781 Processing chromosome scaffold1781 INFO [2014-03-08 06:14:36,496] [Preprocessor.java:241] [main] Processing chromosome scaffold1782 Processing chromosome scaffold1782 INFO [2014-03-08 06:14:36,544] [Preprocessor.java:241] [main] Processing chromosome scaffold1783 Processing chromosome scaffold1783 INFO [2014-03-08 06:14:36,579] [Preprocessor.java:241] [main] Processing chromosome scaffold1784 Processing chromosome scaffold1784 INFO [2014-03-08 06:14:36,587] [Preprocessor.java:241] [main] Processing chromosome scaffold1785 Processing chromosome scaffold1785 INFO [2014-03-08 06:14:36,826] [Preprocessor.java:241] [main] Processing chromosome scaffold1786 Processing chromosome scaffold1786 INFO [2014-03-08 06:14:36,867] [Preprocessor.java:241] [main] Processing chromosome scaffold1787 Processing chromosome scaffold1787 INFO [2014-03-08 06:14:36,885] [Preprocessor.java:241] [main] Processing chromosome scaffold1788 Processing chromosome scaffold1788 INFO [2014-03-08 06:14:37,048] [Preprocessor.java:241] [main] Processing chromosome scaffold1789 Processing chromosome scaffold1789 INFO [2014-03-08 06:14:37,068] [Preprocessor.java:241] [main] Processing chromosome scaffold179 Processing chromosome scaffold179 INFO [2014-03-08 06:14:37,100] [Preprocessor.java:241] [main] Processing chromosome scaffold1790 Processing chromosome scaffold1790 INFO [2014-03-08 06:14:37,136] [Preprocessor.java:241] [main] Processing chromosome scaffold1791 Processing chromosome scaffold1791 INFO [2014-03-08 06:14:37,200] [Preprocessor.java:241] [main] Processing chromosome scaffold17912 Processing chromosome scaffold17912 INFO [2014-03-08 06:14:37,238] [Preprocessor.java:241] [main] Processing chromosome scaffold1792 Processing chromosome scaffold1792 INFO [2014-03-08 06:14:37,311] [Preprocessor.java:241] [main] Processing chromosome scaffold1793 Processing chromosome scaffold1793 INFO [2014-03-08 06:14:37,321] [Preprocessor.java:241] [main] Processing chromosome scaffold1794 Processing chromosome scaffold1794 INFO [2014-03-08 06:14:37,480] [Preprocessor.java:241] [main] Processing chromosome scaffold1795 Processing chromosome scaffold1795 INFO [2014-03-08 06:14:37,524] [Preprocessor.java:241] [main] Processing chromosome scaffold1796 Processing chromosome scaffold1796 INFO [2014-03-08 06:14:37,547] [Preprocessor.java:241] [main] Processing chromosome scaffold1797 Processing chromosome scaffold1797 INFO [2014-03-08 06:14:37,585] [Preprocessor.java:241] [main] Processing chromosome scaffold1798 Processing chromosome scaffold1798 INFO [2014-03-08 06:14:37,604] [Preprocessor.java:241] [main] Processing chromosome scaffold1799 Processing chromosome scaffold1799 INFO [2014-03-08 06:14:37,636] [Preprocessor.java:241] [main] Processing chromosome scaffold18 Processing chromosome scaffold18 INFO [2014-03-08 06:14:37,645] [Preprocessor.java:241] [main] Processing chromosome scaffold180 Processing chromosome scaffold180 INFO [2014-03-08 06:14:37,671] [Preprocessor.java:241] [main] Processing chromosome scaffold1800 Processing chromosome scaffold1800 INFO [2014-03-08 06:14:37,804] [Preprocessor.java:241] [main] Processing chromosome scaffold1801 Processing chromosome scaffold1801 INFO [2014-03-08 06:14:37,849] [Preprocessor.java:241] [main] Processing chromosome scaffold1802 Processing chromosome scaffold1802 INFO [2014-03-08 06:14:37,884] [Preprocessor.java:241] [main] Processing chromosome scaffold1803 Processing chromosome scaffold1803 INFO [2014-03-08 06:14:38,041] [Preprocessor.java:241] [main] Processing chromosome scaffold1804 Processing chromosome scaffold1804 INFO [2014-03-08 06:14:38,151] [Preprocessor.java:241] [main] Processing chromosome scaffold1805 Processing chromosome scaffold1805 INFO [2014-03-08 06:14:38,203] [Preprocessor.java:241] [main] Processing chromosome scaffold18052 Processing chromosome scaffold18052 INFO [2014-03-08 06:14:38,211] [Preprocessor.java:241] [main] Processing chromosome scaffold1806 Processing chromosome scaffold1806 INFO [2014-03-08 06:14:38,263] [Preprocessor.java:241] [main] Processing chromosome scaffold1807 Processing chromosome scaffold1807 INFO [2014-03-08 06:14:38,281] [Preprocessor.java:241] [main] Processing chromosome scaffold1808 Processing chromosome scaffold1808 INFO [2014-03-08 06:14:38,333] [Preprocessor.java:241] [main] Processing chromosome scaffold1809 Processing chromosome scaffold1809 INFO [2014-03-08 06:14:38,342] [Preprocessor.java:241] [main] Processing chromosome scaffold181 Processing chromosome scaffold181 INFO [2014-03-08 06:14:38,349] [Preprocessor.java:241] [main] Processing chromosome scaffold1810 Processing chromosome scaffold1810 INFO [2014-03-08 06:14:38,400] [Preprocessor.java:241] [main] Processing chromosome scaffold1811 Processing chromosome scaffold1811 INFO [2014-03-08 06:14:38,417] [Preprocessor.java:241] [main] Processing chromosome scaffold1812 Processing chromosome scaffold1812 INFO [2014-03-08 06:14:38,434] [Preprocessor.java:241] [main] Processing chromosome scaffold1813 Processing chromosome scaffold1813 INFO [2014-03-08 06:14:38,481] [Preprocessor.java:241] [main] Processing chromosome scaffold1814 Processing chromosome scaffold1814 INFO [2014-03-08 06:14:38,498] [Preprocessor.java:241] [main] Processing chromosome scaffold1815 Processing chromosome scaffold1815 INFO [2014-03-08 06:14:38,553] [Preprocessor.java:241] [main] Processing chromosome scaffold1816 Processing chromosome scaffold1816 INFO [2014-03-08 06:14:38,607] [Preprocessor.java:241] [main] Processing chromosome scaffold1817 Processing chromosome scaffold1817 INFO [2014-03-08 06:14:38,632] [Preprocessor.java:241] [main] Processing chromosome scaffold1818 Processing chromosome scaffold1818 INFO [2014-03-08 06:14:38,678] [Preprocessor.java:241] [main] Processing chromosome scaffold1819 Processing chromosome scaffold1819 INFO [2014-03-08 06:14:38,724] [Preprocessor.java:241] [main] Processing chromosome scaffold182 Processing chromosome scaffold182 INFO [2014-03-08 06:14:38,760] [Preprocessor.java:241] [main] Processing chromosome scaffold1820 Processing chromosome scaffold1820 INFO [2014-03-08 06:14:38,781] [Preprocessor.java:241] [main] Processing chromosome scaffold18202 Processing chromosome scaffold18202 INFO [2014-03-08 06:14:38,845] [Preprocessor.java:241] [main] Processing chromosome scaffold1821 Processing chromosome scaffold1821 INFO [2014-03-08 06:14:38,929] [Preprocessor.java:241] [main] Processing chromosome scaffold1822 Processing chromosome scaffold1822 INFO [2014-03-08 06:14:39,058] [Preprocessor.java:241] [main] Processing chromosome scaffold18220 Processing chromosome scaffold18220 INFO [2014-03-08 06:14:39,100] [Preprocessor.java:241] [main] Processing chromosome scaffold1823 Processing chromosome scaffold1823 INFO [2014-03-08 06:14:39,132] [Preprocessor.java:241] [main] Processing chromosome scaffold1824 Processing chromosome scaffold1824 INFO [2014-03-08 06:14:39,145] [Preprocessor.java:241] [main] Processing chromosome scaffold1825 Processing chromosome scaffold1825 INFO [2014-03-08 06:14:39,202] [Preprocessor.java:241] [main] Processing chromosome scaffold1826 Processing chromosome scaffold1826 INFO [2014-03-08 06:14:39,233] [Preprocessor.java:241] [main] Processing chromosome scaffold1827 Processing chromosome scaffold1827 INFO [2014-03-08 06:14:39,294] [Preprocessor.java:241] [main] Processing chromosome scaffold1828 Processing chromosome scaffold1828 INFO [2014-03-08 06:14:39,321] [Preprocessor.java:241] [main] Processing chromosome scaffold1829 Processing chromosome scaffold1829 .INFO [2014-03-08 06:14:39,372] [Preprocessor.java:241] [main] Processing chromosome scaffold183 Processing chromosome scaffold183 INFO [2014-03-08 06:14:39,390] [Preprocessor.java:241] [main] Processing chromosome scaffold1830 Processing chromosome scaffold1830 INFO [2014-03-08 06:14:39,411] [Preprocessor.java:241] [main] Processing chromosome scaffold1831 Processing chromosome scaffold1831 INFO [2014-03-08 06:14:39,429] [Preprocessor.java:241] [main] Processing chromosome scaffold1832 Processing chromosome scaffold1832 INFO [2014-03-08 06:14:39,507] [Preprocessor.java:241] [main] Processing chromosome scaffold1833 Processing chromosome scaffold1833 INFO [2014-03-08 06:14:39,522] [Preprocessor.java:241] [main] Processing chromosome scaffold1834 Processing chromosome scaffold1834 INFO [2014-03-08 06:14:39,657] [Preprocessor.java:241] [main] Processing chromosome scaffold1835 Processing chromosome scaffold1835 INFO [2014-03-08 06:14:39,759] [Preprocessor.java:241] [main] Processing chromosome scaffold1836 Processing chromosome scaffold1836 INFO [2014-03-08 06:14:39,967] [Preprocessor.java:241] [main] Processing chromosome scaffold1837 Processing chromosome scaffold1837 INFO [2014-03-08 06:14:39,982] [Preprocessor.java:241] [main] Processing chromosome scaffold1838 Processing chromosome scaffold1838 INFO [2014-03-08 06:14:40,092] [Preprocessor.java:241] [main] Processing chromosome scaffold1839 Processing chromosome scaffold1839 INFO [2014-03-08 06:14:40,137] [Preprocessor.java:241] [main] Processing chromosome scaffold184 Processing chromosome scaffold184 INFO [2014-03-08 06:14:40,210] [Preprocessor.java:241] [main] Processing chromosome scaffold1840 Processing chromosome scaffold1840 INFO [2014-03-08 06:14:40,243] [Preprocessor.java:241] [main] Processing chromosome scaffold18408 Processing chromosome scaffold18408 INFO [2014-03-08 06:14:40,250] [Preprocessor.java:241] [main] Processing chromosome scaffold1841 Processing chromosome scaffold1841 INFO [2014-03-08 06:14:40,361] [Preprocessor.java:241] [main] Processing chromosome scaffold1842 Processing chromosome scaffold1842 INFO [2014-03-08 06:14:40,407] [Preprocessor.java:241] [main] Processing chromosome scaffold1843 Processing chromosome scaffold1843 INFO [2014-03-08 06:14:40,488] [Preprocessor.java:241] [main] Processing chromosome scaffold1844 Processing chromosome scaffold1844 INFO [2014-03-08 06:14:40,562] [Preprocessor.java:241] [main] Processing chromosome scaffold1845 Processing chromosome scaffold1845 INFO [2014-03-08 06:14:40,643] [Preprocessor.java:241] [main] Processing chromosome scaffold1846 Processing chromosome scaffold1846 INFO [2014-03-08 06:14:40,679] [Preprocessor.java:241] [main] Processing chromosome scaffold18460 Processing chromosome scaffold18460 INFO [2014-03-08 06:14:40,687] [Preprocessor.java:241] [main] Processing chromosome scaffold1847 Processing chromosome scaffold1847 INFO [2014-03-08 06:14:40,725] [Preprocessor.java:241] [main] Processing chromosome scaffold1848 Processing chromosome scaffold1848 INFO [2014-03-08 06:14:40,799] [Preprocessor.java:241] [main] Processing chromosome scaffold1849 Processing chromosome scaffold1849 INFO [2014-03-08 06:14:40,889] [Preprocessor.java:241] [main] Processing chromosome scaffold185 Processing chromosome scaffold185 INFO [2014-03-08 06:14:40,893] [Preprocessor.java:241] [main] Processing chromosome scaffold1850 Processing chromosome scaffold1850 INFO [2014-03-08 06:14:40,952] [Preprocessor.java:241] [main] Processing chromosome scaffold1851 Processing chromosome scaffold1851 INFO [2014-03-08 06:14:40,996] [Preprocessor.java:241] [main] Processing chromosome scaffold1852 Processing chromosome scaffold1852 INFO [2014-03-08 06:14:41,030] [Preprocessor.java:241] [main] Processing chromosome scaffold1853 Processing chromosome scaffold1853 INFO [2014-03-08 06:14:41,042] [Preprocessor.java:241] [main] Processing chromosome scaffold1854 Processing chromosome scaffold1854 INFO [2014-03-08 06:14:41,064] [Preprocessor.java:241] [main] Processing chromosome scaffold1855 Processing chromosome scaffold1855 INFO [2014-03-08 06:14:41,181] [Preprocessor.java:241] [main] Processing chromosome scaffold1856 Processing chromosome scaffold1856 INFO [2014-03-08 06:14:41,244] [Preprocessor.java:241] [main] Processing chromosome scaffold1857 Processing chromosome scaffold1857 INFO [2014-03-08 06:14:41,364] [Preprocessor.java:241] [main] Processing chromosome scaffold1858 Processing chromosome scaffold1858 INFO [2014-03-08 06:14:41,446] [Preprocessor.java:241] [main] Processing chromosome scaffold1859 Processing chromosome scaffold1859 INFO [2014-03-08 06:14:41,521] [Preprocessor.java:241] [main] Processing chromosome scaffold186 Processing chromosome scaffold186 INFO [2014-03-08 06:14:41,665] [Preprocessor.java:241] [main] Processing chromosome scaffold1860 Processing chromosome scaffold1860 INFO [2014-03-08 06:14:41,767] [Preprocessor.java:241] [main] Processing chromosome scaffold1861 Processing chromosome scaffold1861 INFO [2014-03-08 06:14:41,792] [Preprocessor.java:241] [main] Processing chromosome scaffold1862 Processing chromosome scaffold1862 INFO [2014-03-08 06:14:41,930] [Preprocessor.java:241] [main] Processing chromosome scaffold1863 Processing chromosome scaffold1863 INFO [2014-03-08 06:14:41,999] [Preprocessor.java:241] [main] Processing chromosome scaffold1864 Processing chromosome scaffold1864 INFO [2014-03-08 06:14:42,028] [Preprocessor.java:241] [main] Processing chromosome scaffold1865 Processing chromosome scaffold1865 INFO [2014-03-08 06:14:42,097] [Preprocessor.java:241] [main] Processing chromosome scaffold1866 Processing chromosome scaffold1866 INFO [2014-03-08 06:14:42,199] [Preprocessor.java:241] [main] Processing chromosome scaffold1867 Processing chromosome scaffold1867 INFO [2014-03-08 06:14:42,249] [Preprocessor.java:241] [main] Processing chromosome scaffold1868 Processing chromosome scaffold1868 INFO [2014-03-08 06:14:42,300] [Preprocessor.java:241] [main] Processing chromosome scaffold1869 Processing chromosome scaffold1869 INFO [2014-03-08 06:14:42,416] [Preprocessor.java:241] [main] Processing chromosome scaffold187 Processing chromosome scaffold187 INFO [2014-03-08 06:14:42,429] [Preprocessor.java:241] [main] Processing chromosome scaffold1870 Processing chromosome scaffold1870 INFO [2014-03-08 06:14:42,529] [Preprocessor.java:241] [main] Processing chromosome scaffold1871 Processing chromosome scaffold1871 INFO [2014-03-08 06:14:42,583] [Preprocessor.java:241] [main] Processing chromosome scaffold1872 Processing chromosome scaffold1872 INFO [2014-03-08 06:14:42,647] [Preprocessor.java:241] [main] Processing chromosome scaffold18720 Processing chromosome scaffold18720 INFO [2014-03-08 06:14:42,688] [Preprocessor.java:241] [main] Processing chromosome scaffold1873 Processing chromosome scaffold1873 INFO [2014-03-08 06:14:42,732] [Preprocessor.java:241] [main] Processing chromosome scaffold1874 Processing chromosome scaffold1874 INFO [2014-03-08 06:14:42,780] [Preprocessor.java:241] [main] Processing chromosome scaffold1875 Processing chromosome scaffold1875 .INFO [2014-03-08 06:14:42,803] [Preprocessor.java:241] [main] Processing chromosome scaffold1876 Processing chromosome scaffold1876 INFO [2014-03-08 06:14:42,844] [Preprocessor.java:241] [main] Processing chromosome scaffold1877 Processing chromosome scaffold1877 INFO [2014-03-08 06:14:42,891] [Preprocessor.java:241] [main] Processing chromosome scaffold1878 Processing chromosome scaffold1878 INFO [2014-03-08 06:14:42,933] [Preprocessor.java:241] [main] Processing chromosome scaffold1879 Processing chromosome scaffold1879 INFO [2014-03-08 06:14:43,000] [Preprocessor.java:241] [main] Processing chromosome scaffold188 Processing chromosome scaffold188 INFO [2014-03-08 06:14:43,049] [Preprocessor.java:241] [main] Processing chromosome scaffold1880 Processing chromosome scaffold1880 INFO [2014-03-08 06:14:43,133] [Preprocessor.java:241] [main] Processing chromosome scaffold1881 Processing chromosome scaffold1881 INFO [2014-03-08 06:14:43,189] [Preprocessor.java:241] [main] Processing chromosome scaffold1882 Processing chromosome scaffold1882 INFO [2014-03-08 06:14:43,248] [Preprocessor.java:241] [main] Processing chromosome scaffold1883 Processing chromosome scaffold1883 INFO [2014-03-08 06:14:43,308] [Preprocessor.java:241] [main] Processing chromosome scaffold18830 Processing chromosome scaffold18830 INFO [2014-03-08 06:14:43,318] [Preprocessor.java:241] [main] Processing chromosome scaffold1884 Processing chromosome scaffold1884 INFO [2014-03-08 06:14:43,421] [Preprocessor.java:241] [main] Processing chromosome scaffold1885 Processing chromosome scaffold1885 INFO [2014-03-08 06:14:43,459] [Preprocessor.java:241] [main] Processing chromosome scaffold1886 Processing chromosome scaffold1886 INFO [2014-03-08 06:14:43,510] [Preprocessor.java:241] [main] Processing chromosome scaffold1887 Processing chromosome scaffold1887 INFO [2014-03-08 06:14:43,543] [Preprocessor.java:241] [main] Processing chromosome scaffold1888 Processing chromosome scaffold1888 INFO [2014-03-08 06:14:43,612] [Preprocessor.java:241] [main] Processing chromosome scaffold1889 Processing chromosome scaffold1889 INFO [2014-03-08 06:14:43,696] [Preprocessor.java:241] [main] Processing chromosome scaffold189 Processing chromosome scaffold189 INFO [2014-03-08 06:14:43,786] [Preprocessor.java:241] [main] Processing chromosome scaffold1890 Processing chromosome scaffold1890 INFO [2014-03-08 06:14:43,854] [Preprocessor.java:241] [main] Processing chromosome scaffold1891 Processing chromosome scaffold1891 INFO [2014-03-08 06:14:43,936] [Preprocessor.java:241] [main] Processing chromosome scaffold1892 Processing chromosome scaffold1892 INFO [2014-03-08 06:14:44,021] [Preprocessor.java:241] [main] Processing chromosome scaffold1893 Processing chromosome scaffold1893 INFO [2014-03-08 06:14:44,105] [Preprocessor.java:241] [main] Processing chromosome scaffold1894 Processing chromosome scaffold1894 INFO [2014-03-08 06:14:44,145] [Preprocessor.java:241] [main] Processing chromosome scaffold1895 Processing chromosome scaffold1895 INFO [2014-03-08 06:14:44,277] [Preprocessor.java:241] [main] Processing chromosome scaffold1896 Processing chromosome scaffold1896 INFO [2014-03-08 06:14:44,460] [Preprocessor.java:241] [main] Processing chromosome scaffold1897 Processing chromosome scaffold1897 INFO [2014-03-08 06:14:44,610] [Preprocessor.java:241] [main] Processing chromosome scaffold1898 Processing chromosome scaffold1898 INFO [2014-03-08 06:14:44,678] [Preprocessor.java:241] [main] Processing chromosome scaffold1899 Processing chromosome scaffold1899 INFO [2014-03-08 06:14:44,750] [Preprocessor.java:241] [main] Processing chromosome scaffold19 Processing chromosome scaffold19 INFO [2014-03-08 06:14:44,823] [Preprocessor.java:241] [main] Processing chromosome scaffold190 Processing chromosome scaffold190 INFO [2014-03-08 06:14:44,903] [Preprocessor.java:241] [main] Processing chromosome scaffold1900 Processing chromosome scaffold1900 INFO [2014-03-08 06:14:45,001] [Preprocessor.java:241] [main] Processing chromosome scaffold1901 Processing chromosome scaffold1901 INFO [2014-03-08 06:14:45,095] [Preprocessor.java:241] [main] Processing chromosome scaffold191 Processing chromosome scaffold191 INFO [2014-03-08 06:14:45,151] [Preprocessor.java:241] [main] Processing chromosome scaffold19154 Processing chromosome scaffold19154 INFO [2014-03-08 06:14:45,158] [Preprocessor.java:241] [main] Processing chromosome scaffold192 Processing chromosome scaffold192 INFO [2014-03-08 06:14:45,403] [Preprocessor.java:241] [main] Processing chromosome scaffold19274 Processing chromosome scaffold19274 INFO [2014-03-08 06:14:45,418] [Preprocessor.java:241] [main] Processing chromosome scaffold19292 Processing chromosome scaffold19292 INFO [2014-03-08 06:14:45,433] [Preprocessor.java:241] [main] Processing chromosome scaffold193 Processing chromosome scaffold193 INFO [2014-03-08 06:14:45,567] [Preprocessor.java:241] [main] Processing chromosome scaffold19368 Processing chromosome scaffold19368 INFO [2014-03-08 06:14:45,591] [Preprocessor.java:241] [main] Processing chromosome scaffold194 Processing chromosome scaffold194 INFO [2014-03-08 06:14:45,655] [Preprocessor.java:241] [main] Processing chromosome scaffold19422 Processing chromosome scaffold19422 INFO [2014-03-08 06:14:45,667] [Preprocessor.java:241] [main] Processing chromosome scaffold19506 Processing chromosome scaffold19506 INFO [2014-03-08 06:14:45,727] [Preprocessor.java:241] [main] Processing chromosome scaffold196 Processing chromosome scaffold196 INFO [2014-03-08 06:14:45,766] [Preprocessor.java:241] [main] Processing chromosome scaffold19620 Processing chromosome scaffold19620 INFO [2014-03-08 06:14:45,787] [Preprocessor.java:241] [main] Processing chromosome scaffold19712 Processing chromosome scaffold19712 INFO [2014-03-08 06:14:45,820] [Preprocessor.java:241] [main] Processing chromosome scaffold19762 Processing chromosome scaffold19762 INFO [2014-03-08 06:14:45,830] [Preprocessor.java:241] [main] Processing chromosome scaffold198 Processing chromosome scaffold198 .INFO [2014-03-08 06:14:46,085] [Preprocessor.java:241] [main] Processing chromosome scaffold19806 Processing chromosome scaffold19806 INFO [2014-03-08 06:14:46,118] [Preprocessor.java:241] [main] Processing chromosome scaffold19892 Processing chromosome scaffold19892 INFO [2014-03-08 06:14:46,129] [Preprocessor.java:241] [main] Processing chromosome scaffold19922 Processing chromosome scaffold19922 INFO [2014-03-08 06:14:46,153] [Preprocessor.java:241] [main] Processing chromosome scaffold2 Processing chromosome scaffold2 INFO [2014-03-08 06:14:46,218] [Preprocessor.java:241] [main] Processing chromosome scaffold20 Processing chromosome scaffold20 INFO [2014-03-08 06:14:46,329] [Preprocessor.java:241] [main] Processing chromosome scaffold200 Processing chromosome scaffold200 INFO [2014-03-08 06:14:46,367] [Preprocessor.java:241] [main] Processing chromosome scaffold201 Processing chromosome scaffold201 INFO [2014-03-08 06:14:46,428] [Preprocessor.java:241] [main] Processing chromosome scaffold202 Processing chromosome scaffold202 INFO [2014-03-08 06:14:46,455] [Preprocessor.java:241] [main] Processing chromosome scaffold203 Processing chromosome scaffold203 INFO [2014-03-08 06:14:46,582] [Preprocessor.java:241] [main] Processing chromosome scaffold20312 Processing chromosome scaffold20312 INFO [2014-03-08 06:14:46,598] [Preprocessor.java:241] [main] Processing chromosome scaffold20336 Processing chromosome scaffold20336 INFO [2014-03-08 06:14:46,610] [Preprocessor.java:241] [main] Processing chromosome scaffold204 Processing chromosome scaffold204 INFO [2014-03-08 06:14:46,816] [Preprocessor.java:241] [main] Processing chromosome scaffold205 Processing chromosome scaffold205 INFO [2014-03-08 06:14:46,834] [Preprocessor.java:241] [main] Processing chromosome scaffold20542 Processing chromosome scaffold20542 INFO [2014-03-08 06:14:46,845] [Preprocessor.java:241] [main] Processing chromosome scaffold206 Processing chromosome scaffold206 INFO [2014-03-08 06:14:46,909] [Preprocessor.java:241] [main] Processing chromosome scaffold20602 Processing chromosome scaffold20602 INFO [2014-03-08 06:14:46,945] [Preprocessor.java:241] [main] Processing chromosome scaffold207 Processing chromosome scaffold207 INFO [2014-03-08 06:14:46,965] [Preprocessor.java:241] [main] Processing chromosome scaffold20744 Processing chromosome scaffold20744 INFO [2014-03-08 06:14:46,973] [Preprocessor.java:241] [main] Processing chromosome scaffold20758 Processing chromosome scaffold20758 INFO [2014-03-08 06:14:47,000] [Preprocessor.java:241] [main] Processing chromosome scaffold208 Processing chromosome scaffold208 INFO [2014-03-08 06:14:47,077] [Preprocessor.java:241] [main] Processing chromosome scaffold20836 Processing chromosome scaffold20836 INFO [2014-03-08 06:14:47,119] [Preprocessor.java:241] [main] Processing chromosome scaffold20868 Processing chromosome scaffold20868 INFO [2014-03-08 06:14:47,124] [Preprocessor.java:241] [main] Processing chromosome scaffold209 Processing chromosome scaffold209 INFO [2014-03-08 06:14:47,196] [Preprocessor.java:241] [main] Processing chromosome scaffold21 Processing chromosome scaffold21 INFO [2014-03-08 06:14:47,223] [Preprocessor.java:241] [main] Processing chromosome scaffold210 Processing chromosome scaffold210 INFO [2014-03-08 06:14:47,341] [Preprocessor.java:241] [main] Processing chromosome scaffold21010 Processing chromosome scaffold21010 INFO [2014-03-08 06:14:47,360] [Preprocessor.java:241] [main] Processing chromosome scaffold21056 Processing chromosome scaffold21056 INFO [2014-03-08 06:14:47,378] [Preprocessor.java:241] [main] Processing chromosome scaffold21086 Processing chromosome scaffold21086 INFO [2014-03-08 06:14:47,391] [Preprocessor.java:241] [main] Processing chromosome scaffold21088 Processing chromosome scaffold21088 INFO [2014-03-08 06:14:47,401] [Preprocessor.java:241] [main] Processing chromosome scaffold211 Processing chromosome scaffold211 INFO [2014-03-08 06:14:47,607] [Preprocessor.java:241] [main] Processing chromosome scaffold212 Processing chromosome scaffold212 INFO [2014-03-08 06:14:47,619] [Preprocessor.java:241] [main] Processing chromosome scaffold21290 Processing chromosome scaffold21290 INFO [2014-03-08 06:14:47,661] [Preprocessor.java:241] [main] Processing chromosome scaffold213 Processing chromosome scaffold213 INFO [2014-03-08 06:14:47,689] [Preprocessor.java:241] [main] Processing chromosome scaffold21434 Processing chromosome scaffold21434 INFO [2014-03-08 06:14:47,699] [Preprocessor.java:241] [main] Processing chromosome scaffold215 Processing chromosome scaffold215 INFO [2014-03-08 06:14:47,754] [Preprocessor.java:241] [main] Processing chromosome scaffold21506 Processing chromosome scaffold21506 INFO [2014-03-08 06:14:47,792] [Preprocessor.java:241] [main] Processing chromosome scaffold21682 Processing chromosome scaffold21682 INFO [2014-03-08 06:14:47,830] [Preprocessor.java:241] [main] Processing chromosome scaffold21736 Processing chromosome scaffold21736 INFO [2014-03-08 06:14:47,839] [Preprocessor.java:241] [main] Processing chromosome scaffold21754 Processing chromosome scaffold21754 INFO [2014-03-08 06:14:47,844] [Preprocessor.java:241] [main] Processing chromosome scaffold218 Processing chromosome scaffold218 INFO [2014-03-08 06:14:47,912] [Preprocessor.java:241] [main] Processing chromosome scaffold21890 Processing chromosome scaffold21890 INFO [2014-03-08 06:14:47,918] [Preprocessor.java:241] [main] Processing chromosome scaffold219 Processing chromosome scaffold219 INFO [2014-03-08 06:14:48,009] [Preprocessor.java:241] [main] Processing chromosome scaffold21920 Processing chromosome scaffold21920 INFO [2014-03-08 06:14:48,044] [Preprocessor.java:241] [main] Processing chromosome scaffold21978 Processing chromosome scaffold21978 INFO [2014-03-08 06:14:48,048] [Preprocessor.java:241] [main] Processing chromosome scaffold21998 Processing chromosome scaffold21998 INFO [2014-03-08 06:14:48,056] [Preprocessor.java:241] [main] Processing chromosome scaffold22 Processing chromosome scaffold22 INFO [2014-03-08 06:14:48,369] [Preprocessor.java:241] [main] Processing chromosome scaffold220 Processing chromosome scaffold220 INFO [2014-03-08 06:14:48,384] [Preprocessor.java:241] [main] Processing chromosome scaffold22030 Processing chromosome scaffold22030 INFO [2014-03-08 06:14:48,403] [Preprocessor.java:241] [main] Processing chromosome scaffold22038 Processing chromosome scaffold22038 INFO [2014-03-08 06:14:48,408] [Preprocessor.java:241] [main] Processing chromosome scaffold221 Processing chromosome scaffold221 INFO [2014-03-08 06:14:48,431] [Preprocessor.java:241] [main] Processing chromosome scaffold222 Processing chromosome scaffold222 INFO [2014-03-08 06:14:48,460] [Preprocessor.java:241] [main] Processing chromosome scaffold22228 Processing chromosome scaffold22228 INFO [2014-03-08 06:14:48,510] [Preprocessor.java:241] [main] Processing chromosome scaffold22240 Processing chromosome scaffold22240 INFO [2014-03-08 06:14:48,523] [Preprocessor.java:241] [main] Processing chromosome scaffold223 Processing chromosome scaffold223 INFO [2014-03-08 06:14:48,584] [Preprocessor.java:241] [main] Processing chromosome scaffold224 Processing chromosome scaffold224 INFO [2014-03-08 06:14:48,629] [Preprocessor.java:241] [main] Processing chromosome scaffold22464 Processing chromosome scaffold22464 INFO [2014-03-08 06:14:48,648] [Preprocessor.java:241] [main] Processing chromosome scaffold22488 Processing chromosome scaffold22488 INFO [2014-03-08 06:14:48,667] [Preprocessor.java:241] [main] Processing chromosome scaffold226 Processing chromosome scaffold226 INFO [2014-03-08 06:14:48,928] [Preprocessor.java:241] [main] Processing chromosome scaffold22670 Processing chromosome scaffold22670 INFO [2014-03-08 06:14:48,940] [Preprocessor.java:241] [main] Processing chromosome scaffold227 Processing chromosome scaffold227 INFO [2014-03-08 06:14:49,051] [Preprocessor.java:241] [main] Processing chromosome scaffold22766 Processing chromosome scaffold22766 INFO [2014-03-08 06:14:49,066] [Preprocessor.java:241] [main] Processing chromosome scaffold228 Processing chromosome scaffold228 INFO [2014-03-08 06:14:49,078] [Preprocessor.java:241] [main] Processing chromosome scaffold229 Processing chromosome scaffold229 INFO [2014-03-08 06:14:49,099] [Preprocessor.java:241] [main] Processing chromosome scaffold230 Processing chromosome scaffold230 INFO [2014-03-08 06:14:49,145] [Preprocessor.java:241] [main] Processing chromosome scaffold231 Processing chromosome scaffold231 INFO [2014-03-08 06:14:49,155] [Preprocessor.java:241] [main] Processing chromosome scaffold232 Processing chromosome scaffold232 INFO [2014-03-08 06:14:49,191] [Preprocessor.java:241] [main] Processing chromosome scaffold23228 Processing chromosome scaffold23228 INFO [2014-03-08 06:14:49,200] [Preprocessor.java:241] [main] Processing chromosome scaffold23242 Processing chromosome scaffold23242 INFO [2014-03-08 06:14:49,203] [Preprocessor.java:241] [main] Processing chromosome scaffold23290 Processing chromosome scaffold23290 INFO [2014-03-08 06:14:49,245] [Preprocessor.java:241] [main] Processing chromosome scaffold233 Processing chromosome scaffold233 INFO [2014-03-08 06:14:49,249] [Preprocessor.java:241] [main] Processing chromosome scaffold23358 Processing chromosome scaffold23358 INFO [2014-03-08 06:14:49,306] [Preprocessor.java:241] [main] Processing chromosome scaffold234 Processing chromosome scaffold234 INFO [2014-03-08 06:14:49,325] [Preprocessor.java:241] [main] Processing chromosome scaffold235 Processing chromosome scaffold235 INFO [2014-03-08 06:14:49,346] [Preprocessor.java:241] [main] Processing chromosome scaffold23524 Processing chromosome scaffold23524 INFO [2014-03-08 06:14:49,351] [Preprocessor.java:241] [main] Processing chromosome scaffold23536 Processing chromosome scaffold23536 INFO [2014-03-08 06:14:49,356] [Preprocessor.java:241] [main] Processing chromosome scaffold236 Processing chromosome scaffold236 INFO [2014-03-08 06:14:49,467] [Preprocessor.java:241] [main] Processing chromosome scaffold23696 Processing chromosome scaffold23696 INFO [2014-03-08 06:14:49,483] [Preprocessor.java:241] [main] Processing chromosome scaffold237 Processing chromosome scaffold237 INFO [2014-03-08 06:14:49,588] [Preprocessor.java:241] [main] Processing chromosome scaffold23816 Processing chromosome scaffold23816 INFO [2014-03-08 06:14:49,597] [Preprocessor.java:241] [main] Processing chromosome scaffold23842 Processing chromosome scaffold23842 INFO [2014-03-08 06:14:49,613] [Preprocessor.java:241] [main] Processing chromosome scaffold23854 Processing chromosome scaffold23854 INFO [2014-03-08 06:14:49,616] [Preprocessor.java:241] [main] Processing chromosome scaffold24 Processing chromosome scaffold24 INFO [2014-03-08 06:14:49,623] [Preprocessor.java:241] [main] Processing chromosome scaffold240 Processing chromosome scaffold240 INFO [2014-03-08 06:14:49,662] [Preprocessor.java:241] [main] Processing chromosome scaffold24002 Processing chromosome scaffold24002 INFO [2014-03-08 06:14:49,695] [Preprocessor.java:241] [main] Processing chromosome scaffold24006 Processing chromosome scaffold24006 INFO [2014-03-08 06:14:49,706] [Preprocessor.java:241] [main] Processing chromosome scaffold24028 Processing chromosome scaffold24028 INFO [2014-03-08 06:14:49,747] [Preprocessor.java:241] [main] Processing chromosome scaffold24066 Processing chromosome scaffold24066 INFO [2014-03-08 06:14:49,766] [Preprocessor.java:241] [main] Processing chromosome scaffold24094 Processing chromosome scaffold24094 INFO [2014-03-08 06:14:49,772] [Preprocessor.java:241] [main] Processing chromosome scaffold241 Processing chromosome scaffold241 .INFO [2014-03-08 06:14:49,941] [Preprocessor.java:241] [main] Processing chromosome scaffold24102 Processing chromosome scaffold24102 INFO [2014-03-08 06:14:49,952] [Preprocessor.java:241] [main] Processing chromosome scaffold242 Processing chromosome scaffold242 INFO [2014-03-08 06:14:49,980] [Preprocessor.java:241] [main] Processing chromosome scaffold24238 Processing chromosome scaffold24238 INFO [2014-03-08 06:14:50,003] [Preprocessor.java:241] [main] Processing chromosome scaffold243 Processing chromosome scaffold243 INFO [2014-03-08 06:14:50,031] [Preprocessor.java:241] [main] Processing chromosome scaffold24332 Processing chromosome scaffold24332 INFO [2014-03-08 06:14:50,035] [Preprocessor.java:241] [main] Processing chromosome scaffold244 Processing chromosome scaffold244 INFO [2014-03-08 06:14:50,059] [Preprocessor.java:241] [main] Processing chromosome scaffold24410 Processing chromosome scaffold24410 INFO [2014-03-08 06:14:50,074] [Preprocessor.java:241] [main] Processing chromosome scaffold24412 Processing chromosome scaffold24412 INFO [2014-03-08 06:14:50,083] [Preprocessor.java:241] [main] Processing chromosome scaffold24484 Processing chromosome scaffold24484 INFO [2014-03-08 06:14:50,093] [Preprocessor.java:241] [main] Processing chromosome scaffold245 Processing chromosome scaffold245 INFO [2014-03-08 06:14:50,097] [Preprocessor.java:241] [main] Processing chromosome scaffold24554 Processing chromosome scaffold24554 INFO [2014-03-08 06:14:50,104] [Preprocessor.java:241] [main] Processing chromosome scaffold246 Processing chromosome scaffold246 INFO [2014-03-08 06:14:50,138] [Preprocessor.java:241] [main] Processing chromosome scaffold247 Processing chromosome scaffold247 INFO [2014-03-08 06:14:50,176] [Preprocessor.java:241] [main] Processing chromosome scaffold24702 Processing chromosome scaffold24702 INFO [2014-03-08 06:14:50,183] [Preprocessor.java:241] [main] Processing chromosome scaffold24772 Processing chromosome scaffold24772 INFO [2014-03-08 06:14:50,187] [Preprocessor.java:241] [main] Processing chromosome scaffold24776 Processing chromosome scaffold24776 INFO [2014-03-08 06:14:50,196] [Preprocessor.java:241] [main] Processing chromosome scaffold24784 Processing chromosome scaffold24784 INFO [2014-03-08 06:14:50,259] [Preprocessor.java:241] [main] Processing chromosome scaffold24786 Processing chromosome scaffold24786 INFO [2014-03-08 06:14:50,266] [Preprocessor.java:241] [main] Processing chromosome scaffold248 Processing chromosome scaffold248 INFO [2014-03-08 06:14:50,360] [Preprocessor.java:241] [main] Processing chromosome scaffold24950 Processing chromosome scaffold24950 INFO [2014-03-08 06:14:50,389] [Preprocessor.java:241] [main] Processing chromosome scaffold24958 Processing chromosome scaffold24958 INFO [2014-03-08 06:14:50,396] [Preprocessor.java:241] [main] Processing chromosome scaffold25 Processing chromosome scaffold25 INFO [2014-03-08 06:14:50,455] [Preprocessor.java:241] [main] Processing chromosome scaffold250 Processing chromosome scaffold250 INFO [2014-03-08 06:14:50,471] [Preprocessor.java:241] [main] Processing chromosome scaffold251 Processing chromosome scaffold251 INFO [2014-03-08 06:14:50,528] [Preprocessor.java:241] [main] Processing chromosome scaffold25146 Processing chromosome scaffold25146 INFO [2014-03-08 06:14:50,531] [Preprocessor.java:241] [main] Processing chromosome scaffold252 Processing chromosome scaffold252 INFO [2014-03-08 06:14:50,620] [Preprocessor.java:241] [main] Processing chromosome scaffold25200 Processing chromosome scaffold25200 INFO [2014-03-08 06:14:50,625] [Preprocessor.java:241] [main] Processing chromosome scaffold25224 Processing chromosome scaffold25224 INFO [2014-03-08 06:14:50,630] [Preprocessor.java:241] [main] Processing chromosome scaffold25246 Processing chromosome scaffold25246 INFO [2014-03-08 06:14:50,649] [Preprocessor.java:241] [main] Processing chromosome scaffold25252 Processing chromosome scaffold25252 INFO [2014-03-08 06:14:50,659] [Preprocessor.java:241] [main] Processing chromosome scaffold25284 Processing chromosome scaffold25284 INFO [2014-03-08 06:14:50,671] [Preprocessor.java:241] [main] Processing chromosome scaffold253 Processing chromosome scaffold253 INFO [2014-03-08 06:14:50,707] [Preprocessor.java:241] [main] Processing chromosome scaffold254 Processing chromosome scaffold254 INFO [2014-03-08 06:14:50,729] [Preprocessor.java:241] [main] Processing chromosome scaffold25462 Processing chromosome scaffold25462 INFO [2014-03-08 06:14:50,748] [Preprocessor.java:241] [main] Processing chromosome scaffold25474 Processing chromosome scaffold25474 INFO [2014-03-08 06:14:50,759] [Preprocessor.java:241] [main] Processing chromosome scaffold255 Processing chromosome scaffold255 INFO [2014-03-08 06:14:50,764] [Preprocessor.java:241] [main] Processing chromosome scaffold25520 Processing chromosome scaffold25520 INFO [2014-03-08 06:14:50,772] [Preprocessor.java:241] [main] Processing chromosome scaffold256 Processing chromosome scaffold256 INFO [2014-03-08 06:14:50,794] [Preprocessor.java:241] [main] Processing chromosome scaffold25628 Processing chromosome scaffold25628 INFO [2014-03-08 06:14:50,802] [Preprocessor.java:241] [main] Processing chromosome scaffold25658 Processing chromosome scaffold25658 INFO [2014-03-08 06:14:50,839] [Preprocessor.java:241] [main] Processing chromosome scaffold25660 Processing chromosome scaffold25660 INFO [2014-03-08 06:14:50,874] [Preprocessor.java:241] [main] Processing chromosome scaffold257 Processing chromosome scaffold257 INFO [2014-03-08 06:14:51,134] [Preprocessor.java:241] [main] Processing chromosome scaffold25710 Processing chromosome scaffold25710 INFO [2014-03-08 06:14:51,138] [Preprocessor.java:241] [main] Processing chromosome scaffold25716 Processing chromosome scaffold25716 INFO [2014-03-08 06:14:51,140] [Preprocessor.java:241] [main] Processing chromosome scaffold258 Processing chromosome scaffold258 INFO [2014-03-08 06:14:51,283] [Preprocessor.java:241] [main] Processing chromosome scaffold25846 Processing chromosome scaffold25846 INFO [2014-03-08 06:14:51,300] [Preprocessor.java:241] [main] Processing chromosome scaffold25910 Processing chromosome scaffold25910 INFO [2014-03-08 06:14:51,306] [Preprocessor.java:241] [main] Processing chromosome scaffold26 Processing chromosome scaffold26 INFO [2014-03-08 06:14:51,364] [Preprocessor.java:241] [main] Processing chromosome scaffold260 Processing chromosome scaffold260 INFO [2014-03-08 06:14:51,396] [Preprocessor.java:241] [main] Processing chromosome scaffold26074 Processing chromosome scaffold26074 INFO [2014-03-08 06:14:51,424] [Preprocessor.java:241] [main] Processing chromosome scaffold261 Processing chromosome scaffold261 INFO [2014-03-08 06:14:51,430] [Preprocessor.java:241] [main] Processing chromosome scaffold26176 Processing chromosome scaffold26176 INFO [2014-03-08 06:14:51,464] [Preprocessor.java:241] [main] Processing chromosome scaffold262 Processing chromosome scaffold262 INFO [2014-03-08 06:14:51,521] [Preprocessor.java:241] [main] Processing chromosome scaffold26218 Processing chromosome scaffold26218 INFO [2014-03-08 06:14:51,537] [Preprocessor.java:241] [main] Processing chromosome scaffold264 Processing chromosome scaffold264 INFO [2014-03-08 06:14:51,566] [Preprocessor.java:241] [main] Processing chromosome scaffold265 Processing chromosome scaffold265 INFO [2014-03-08 06:14:51,581] [Preprocessor.java:241] [main] Processing chromosome scaffold26586 Processing chromosome scaffold26586 INFO [2014-03-08 06:14:51,617] [Preprocessor.java:241] [main] Processing chromosome scaffold266 Processing chromosome scaffold266 INFO [2014-03-08 06:14:51,675] [Preprocessor.java:241] [main] Processing chromosome scaffold26634 Processing chromosome scaffold26634 INFO [2014-03-08 06:14:51,686] [Preprocessor.java:241] [main] Processing chromosome scaffold267 Processing chromosome scaffold267 INFO [2014-03-08 06:14:51,763] [Preprocessor.java:241] [main] Processing chromosome scaffold268 Processing chromosome scaffold268 INFO [2014-03-08 06:14:51,791] [Preprocessor.java:241] [main] Processing chromosome scaffold26804 Processing chromosome scaffold26804 INFO [2014-03-08 06:14:51,823] [Preprocessor.java:241] [main] Processing chromosome scaffold269 Processing chromosome scaffold269 INFO [2014-03-08 06:14:51,976] [Preprocessor.java:241] [main] Processing chromosome scaffold27 Processing chromosome scaffold27 INFO [2014-03-08 06:14:52,014] [Preprocessor.java:241] [main] Processing chromosome scaffold270 Processing chromosome scaffold270 INFO [2014-03-08 06:14:52,072] [Preprocessor.java:241] [main] Processing chromosome scaffold27078 Processing chromosome scaffold27078 INFO [2014-03-08 06:14:52,081] [Preprocessor.java:241] [main] Processing chromosome scaffold27080 Processing chromosome scaffold27080 INFO [2014-03-08 06:14:52,089] [Preprocessor.java:241] [main] Processing chromosome scaffold271 Processing chromosome scaffold271 INFO [2014-03-08 06:14:52,303] [Preprocessor.java:241] [main] Processing chromosome scaffold27192 Processing chromosome scaffold27192 INFO [2014-03-08 06:14:52,324] [Preprocessor.java:241] [main] Processing chromosome scaffold272 Processing chromosome scaffold272 INFO [2014-03-08 06:14:52,357] [Preprocessor.java:241] [main] Processing chromosome scaffold27274 Processing chromosome scaffold27274 INFO [2014-03-08 06:14:52,399] [Preprocessor.java:241] [main] Processing chromosome scaffold273 Processing chromosome scaffold273 INFO [2014-03-08 06:14:52,453] [Preprocessor.java:241] [main] Processing chromosome scaffold27302 Processing chromosome scaffold27302 INFO [2014-03-08 06:14:52,479] [Preprocessor.java:241] [main] Processing chromosome scaffold274 Processing chromosome scaffold274 INFO [2014-03-08 06:14:52,573] [Preprocessor.java:241] [main] Processing chromosome scaffold27422 Processing chromosome scaffold27422 INFO [2014-03-08 06:14:52,596] [Preprocessor.java:241] [main] Processing chromosome scaffold275 Processing chromosome scaffold275 INFO [2014-03-08 06:14:52,616] [Preprocessor.java:241] [main] Processing chromosome scaffold27582 Processing chromosome scaffold27582 INFO [2014-03-08 06:14:52,633] [Preprocessor.java:241] [main] Processing chromosome scaffold276 Processing chromosome scaffold276 INFO [2014-03-08 06:14:52,701] [Preprocessor.java:241] [main] Processing chromosome scaffold27608 Processing chromosome scaffold27608 INFO [2014-03-08 06:14:52,708] [Preprocessor.java:241] [main] Processing chromosome scaffold27618 Processing chromosome scaffold27618 INFO [2014-03-08 06:14:52,717] [Preprocessor.java:241] [main] Processing chromosome scaffold27654 Processing chromosome scaffold27654 INFO [2014-03-08 06:14:52,779] [Preprocessor.java:241] [main] Processing chromosome scaffold277 Processing chromosome scaffold277 INFO [2014-03-08 06:14:52,837] [Preprocessor.java:241] [main] Processing chromosome scaffold27724 Processing chromosome scaffold27724 INFO [2014-03-08 06:14:52,859] [Preprocessor.java:241] [main] Processing chromosome scaffold27740 Processing chromosome scaffold27740 INFO [2014-03-08 06:14:52,901] [Preprocessor.java:241] [main] Processing chromosome scaffold278 Processing chromosome scaffold278 INFO [2014-03-08 06:14:52,949] [Preprocessor.java:241] [main] Processing chromosome scaffold27804 Processing chromosome scaffold27804 INFO [2014-03-08 06:14:52,987] [Preprocessor.java:241] [main] Processing chromosome scaffold27810 Processing chromosome scaffold27810 INFO [2014-03-08 06:14:52,998] [Preprocessor.java:241] [main] Processing chromosome scaffold27818 Processing chromosome scaffold27818 INFO [2014-03-08 06:14:53,001] [Preprocessor.java:241] [main] Processing chromosome scaffold27856 Processing chromosome scaffold27856 INFO [2014-03-08 06:14:53,020] [Preprocessor.java:241] [main] Processing chromosome scaffold27858 Processing chromosome scaffold27858 INFO [2014-03-08 06:14:53,040] [Preprocessor.java:241] [main] Processing chromosome scaffold279 Processing chromosome scaffold279 INFO [2014-03-08 06:14:53,120] [Preprocessor.java:241] [main] Processing chromosome scaffold27958 Processing chromosome scaffold27958 INFO [2014-03-08 06:14:53,148] [Preprocessor.java:241] [main] Processing chromosome scaffold28 Processing chromosome scaffold28 INFO [2014-03-08 06:14:53,151] [Preprocessor.java:241] [main] Processing chromosome scaffold280 Processing chromosome scaffold280 INFO [2014-03-08 06:14:53,313] [Preprocessor.java:241] [main] Processing chromosome scaffold28092 Processing chromosome scaffold28092 INFO [2014-03-08 06:14:53,328] [Preprocessor.java:241] [main] Processing chromosome scaffold281 Processing chromosome scaffold281 INFO [2014-03-08 06:14:53,359] [Preprocessor.java:241] [main] Processing chromosome scaffold28112 Processing chromosome scaffold28112 INFO [2014-03-08 06:14:53,363] [Preprocessor.java:241] [main] Processing chromosome scaffold28134 Processing chromosome scaffold28134 INFO [2014-03-08 06:14:53,378] [Preprocessor.java:241] [main] Processing chromosome scaffold28138 Processing chromosome scaffold28138 INFO [2014-03-08 06:14:53,385] [Preprocessor.java:241] [main] Processing chromosome scaffold28182 Processing chromosome scaffold28182 INFO [2014-03-08 06:14:53,390] [Preprocessor.java:241] [main] Processing chromosome scaffold282 Processing chromosome scaffold282 INFO [2014-03-08 06:14:53,437] [Preprocessor.java:241] [main] Processing chromosome scaffold28290 Processing chromosome scaffold28290 INFO [2014-03-08 06:14:53,445] [Preprocessor.java:241] [main] Processing chromosome scaffold283 Processing chromosome scaffold283 INFO [2014-03-08 06:14:53,463] [Preprocessor.java:241] [main] Processing chromosome scaffold28314 Processing chromosome scaffold28314 INFO [2014-03-08 06:14:53,490] [Preprocessor.java:241] [main] Processing chromosome scaffold28372 Processing chromosome scaffold28372 INFO [2014-03-08 06:14:53,507] [Preprocessor.java:241] [main] Processing chromosome scaffold284 Processing chromosome scaffold284 INFO [2014-03-08 06:14:53,533] [Preprocessor.java:241] [main] Processing chromosome scaffold28424 Processing chromosome scaffold28424 INFO [2014-03-08 06:14:53,536] [Preprocessor.java:241] [main] Processing chromosome scaffold28478 Processing chromosome scaffold28478 INFO [2014-03-08 06:14:53,557] [Preprocessor.java:241] [main] Processing chromosome scaffold285 Processing chromosome scaffold285 INFO [2014-03-08 06:14:53,661] [Preprocessor.java:241] [main] Processing chromosome scaffold28564 Processing chromosome scaffold28564 INFO [2014-03-08 06:14:53,679] [Preprocessor.java:241] [main] Processing chromosome scaffold286 Processing chromosome scaffold286 INFO [2014-03-08 06:14:53,745] [Preprocessor.java:241] [main] Processing chromosome scaffold28612 Processing chromosome scaffold28612 INFO [2014-03-08 06:14:53,761] [Preprocessor.java:241] [main] Processing chromosome scaffold28672 Processing chromosome scaffold28672 INFO [2014-03-08 06:14:53,770] [Preprocessor.java:241] [main] Processing chromosome scaffold28682 Processing chromosome scaffold28682 INFO [2014-03-08 06:14:53,775] [Preprocessor.java:241] [main] Processing chromosome scaffold287 Processing chromosome scaffold287 INFO [2014-03-08 06:14:53,806] [Preprocessor.java:241] [main] Processing chromosome scaffold28720 Processing chromosome scaffold28720 INFO [2014-03-08 06:14:53,848] [Preprocessor.java:241] [main] Processing chromosome scaffold288 Processing chromosome scaffold288 INFO [2014-03-08 06:14:54,008] [Preprocessor.java:241] [main] Processing chromosome scaffold289 Processing chromosome scaffold289 INFO [2014-03-08 06:14:54,030] [Preprocessor.java:241] [main] Processing chromosome scaffold29 Processing chromosome scaffold29 INFO [2014-03-08 06:14:54,064] [Preprocessor.java:241] [main] Processing chromosome scaffold290 Processing chromosome scaffold290 INFO [2014-03-08 06:14:54,162] [Preprocessor.java:241] [main] Processing chromosome scaffold29000 Processing chromosome scaffold29000 INFO [2014-03-08 06:14:54,203] [Preprocessor.java:241] [main] Processing chromosome scaffold29020 Processing chromosome scaffold29020 INFO [2014-03-08 06:14:54,210] [Preprocessor.java:241] [main] Processing chromosome scaffold29034 Processing chromosome scaffold29034 INFO [2014-03-08 06:14:54,215] [Preprocessor.java:241] [main] Processing chromosome scaffold29068 Processing chromosome scaffold29068 INFO [2014-03-08 06:14:54,224] [Preprocessor.java:241] [main] Processing chromosome scaffold29078 Processing chromosome scaffold29078 INFO [2014-03-08 06:14:54,238] [Preprocessor.java:241] [main] Processing chromosome scaffold291 Processing chromosome scaffold291 INFO [2014-03-08 06:14:54,261] [Preprocessor.java:241] [main] Processing chromosome scaffold29126 Processing chromosome scaffold29126 INFO [2014-03-08 06:14:54,284] [Preprocessor.java:241] [main] Processing chromosome scaffold29142 Processing chromosome scaffold29142 INFO [2014-03-08 06:14:54,305] [Preprocessor.java:241] [main] Processing chromosome scaffold29146 Processing chromosome scaffold29146 INFO [2014-03-08 06:14:54,313] [Preprocessor.java:241] [main] Processing chromosome scaffold29148 Processing chromosome scaffold29148 INFO [2014-03-08 06:14:54,316] [Preprocessor.java:241] [main] Processing chromosome scaffold29152 Processing chromosome scaffold29152 INFO [2014-03-08 06:14:54,318] [Preprocessor.java:241] [main] Processing chromosome scaffold29166 Processing chromosome scaffold29166 INFO [2014-03-08 06:14:54,321] [Preprocessor.java:241] [main] Processing chromosome scaffold292 Processing chromosome scaffold292 INFO [2014-03-08 06:14:54,350] [Preprocessor.java:241] [main] Processing chromosome scaffold29220 Processing chromosome scaffold29220 INFO [2014-03-08 06:14:54,354] [Preprocessor.java:241] [main] Processing chromosome scaffold29236 Processing chromosome scaffold29236 INFO [2014-03-08 06:14:54,371] [Preprocessor.java:241] [main] Processing chromosome scaffold29316 Processing chromosome scaffold29316 INFO [2014-03-08 06:14:54,400] [Preprocessor.java:241] [main] Processing chromosome scaffold29334 Processing chromosome scaffold29334 INFO [2014-03-08 06:14:54,404] [Preprocessor.java:241] [main] Processing chromosome scaffold29336 Processing chromosome scaffold29336 INFO [2014-03-08 06:14:54,433] [Preprocessor.java:241] [main] Processing chromosome scaffold29372 Processing chromosome scaffold29372 INFO [2014-03-08 06:14:54,442] [Preprocessor.java:241] [main] Processing chromosome scaffold294 Processing chromosome scaffold294 INFO [2014-03-08 06:14:54,508] [Preprocessor.java:241] [main] Processing chromosome scaffold29468 Processing chromosome scaffold29468 INFO [2014-03-08 06:14:54,537] [Preprocessor.java:241] [main] Processing chromosome scaffold29486 Processing chromosome scaffold29486 INFO [2014-03-08 06:14:54,547] [Preprocessor.java:241] [main] Processing chromosome scaffold29492 Processing chromosome scaffold29492 INFO [2014-03-08 06:14:54,549] [Preprocessor.java:241] [main] Processing chromosome scaffold29496 Processing chromosome scaffold29496 INFO [2014-03-08 06:14:54,555] [Preprocessor.java:241] [main] Processing chromosome scaffold295 Processing chromosome scaffold295 INFO [2014-03-08 06:14:54,577] [Preprocessor.java:241] [main] Processing chromosome scaffold29522 Processing chromosome scaffold29522 INFO [2014-03-08 06:14:54,609] [Preprocessor.java:241] [main] Processing chromosome scaffold29534 Processing chromosome scaffold29534 INFO [2014-03-08 06:14:54,629] [Preprocessor.java:241] [main] Processing chromosome scaffold29580 Processing chromosome scaffold29580 INFO [2014-03-08 06:14:54,669] [Preprocessor.java:241] [main] Processing chromosome scaffold29598 Processing chromosome scaffold29598 INFO [2014-03-08 06:14:54,674] [Preprocessor.java:241] [main] Processing chromosome scaffold296 Processing chromosome scaffold296 INFO [2014-03-08 06:14:54,747] [Preprocessor.java:241] [main] Processing chromosome scaffold29654 Processing chromosome scaffold29654 INFO [2014-03-08 06:14:54,778] [Preprocessor.java:241] [main] Processing chromosome scaffold29660 Processing chromosome scaffold29660 INFO [2014-03-08 06:14:54,789] [Preprocessor.java:241] [main] Processing chromosome scaffold29712 Processing chromosome scaffold29712 INFO [2014-03-08 06:14:54,792] [Preprocessor.java:241] [main] Processing chromosome scaffold29728 Processing chromosome scaffold29728 INFO [2014-03-08 06:14:54,815] [Preprocessor.java:241] [main] Processing chromosome scaffold29738 Processing chromosome scaffold29738 INFO [2014-03-08 06:14:54,817] [Preprocessor.java:241] [main] Processing chromosome scaffold29760 Processing chromosome scaffold29760 INFO [2014-03-08 06:14:54,820] [Preprocessor.java:241] [main] Processing chromosome scaffold29776 Processing chromosome scaffold29776 INFO [2014-03-08 06:14:54,828] [Preprocessor.java:241] [main] Processing chromosome scaffold298 Processing chromosome scaffold298 INFO [2014-03-08 06:14:54,903] [Preprocessor.java:241] [main] Processing chromosome scaffold29802 Processing chromosome scaffold29802 INFO [2014-03-08 06:14:54,912] [Preprocessor.java:241] [main] Processing chromosome scaffold29818 Processing chromosome scaffold29818 INFO [2014-03-08 06:14:54,915] [Preprocessor.java:241] [main] Processing chromosome scaffold29842 Processing chromosome scaffold29842 INFO [2014-03-08 06:14:54,918] [Preprocessor.java:241] [main] Processing chromosome scaffold29846 Processing chromosome scaffold29846 INFO [2014-03-08 06:14:54,926] [Preprocessor.java:241] [main] Processing chromosome scaffold29852 Processing chromosome scaffold29852 INFO [2014-03-08 06:14:54,929] [Preprocessor.java:241] [main] Processing chromosome scaffold29856 Processing chromosome scaffold29856 INFO [2014-03-08 06:14:54,943] [Preprocessor.java:241] [main] Processing chromosome scaffold29874 Processing chromosome scaffold29874 INFO [2014-03-08 06:14:54,963] [Preprocessor.java:241] [main] Processing chromosome scaffold299 Processing chromosome scaffold299 INFO [2014-03-08 06:14:54,982] [Preprocessor.java:241] [main] Processing chromosome scaffold29906 Processing chromosome scaffold29906 INFO [2014-03-08 06:14:54,988] [Preprocessor.java:241] [main] Processing chromosome scaffold29912 Processing chromosome scaffold29912 INFO [2014-03-08 06:14:55,003] [Preprocessor.java:241] [main] Processing chromosome scaffold3 Processing chromosome scaffold3 .INFO [2014-03-08 06:14:55,217] [Preprocessor.java:241] [main] Processing chromosome scaffold30 Processing chromosome scaffold30 INFO [2014-03-08 06:14:55,229] [Preprocessor.java:241] [main] Processing chromosome scaffold300 Processing chromosome scaffold300 INFO [2014-03-08 06:14:55,241] [Preprocessor.java:241] [main] Processing chromosome scaffold30010 Processing chromosome scaffold30010 INFO [2014-03-08 06:14:55,246] [Preprocessor.java:241] [main] Processing chromosome scaffold30034 Processing chromosome scaffold30034 INFO [2014-03-08 06:14:55,255] [Preprocessor.java:241] [main] Processing chromosome scaffold30052 Processing chromosome scaffold30052 INFO [2014-03-08 06:14:55,263] [Preprocessor.java:241] [main] Processing chromosome scaffold30068 Processing chromosome scaffold30068 INFO [2014-03-08 06:14:55,280] [Preprocessor.java:241] [main] Processing chromosome scaffold30078 Processing chromosome scaffold30078 INFO [2014-03-08 06:14:55,288] [Preprocessor.java:241] [main] Processing chromosome scaffold301 Processing chromosome scaffold301 INFO [2014-03-08 06:14:55,442] [Preprocessor.java:241] [main] Processing chromosome scaffold30150 Processing chromosome scaffold30150 INFO [2014-03-08 06:14:55,472] [Preprocessor.java:241] [main] Processing chromosome scaffold30164 Processing chromosome scaffold30164 INFO [2014-03-08 06:14:55,481] [Preprocessor.java:241] [main] Processing chromosome scaffold302 Processing chromosome scaffold302 INFO [2014-03-08 06:14:55,519] [Preprocessor.java:241] [main] Processing chromosome scaffold30212 Processing chromosome scaffold30212 INFO [2014-03-08 06:14:55,553] [Preprocessor.java:241] [main] Processing chromosome scaffold30230 Processing chromosome scaffold30230 INFO [2014-03-08 06:14:55,555] [Preprocessor.java:241] [main] Processing chromosome scaffold30256 Processing chromosome scaffold30256 INFO [2014-03-08 06:14:55,568] [Preprocessor.java:241] [main] Processing chromosome scaffold303 Processing chromosome scaffold303 INFO [2014-03-08 06:14:55,581] [Preprocessor.java:241] [main] Processing chromosome scaffold30304 Processing chromosome scaffold30304 INFO [2014-03-08 06:14:55,596] [Preprocessor.java:241] [main] Processing chromosome scaffold30314 Processing chromosome scaffold30314 INFO [2014-03-08 06:14:55,606] [Preprocessor.java:241] [main] Processing chromosome scaffold30348 Processing chromosome scaffold30348 INFO [2014-03-08 06:14:55,666] [Preprocessor.java:241] [main] Processing chromosome scaffold304 Processing chromosome scaffold304 INFO [2014-03-08 06:14:55,759] [Preprocessor.java:241] [main] Processing chromosome scaffold30442 Processing chromosome scaffold30442 INFO [2014-03-08 06:14:55,774] [Preprocessor.java:241] [main] Processing chromosome scaffold30462 Processing chromosome scaffold30462 INFO [2014-03-08 06:14:55,791] [Preprocessor.java:241] [main] Processing chromosome scaffold30486 Processing chromosome scaffold30486 INFO [2014-03-08 06:14:55,802] [Preprocessor.java:241] [main] Processing chromosome scaffold305 Processing chromosome scaffold305 INFO [2014-03-08 06:14:55,915] [Preprocessor.java:241] [main] Processing chromosome scaffold30524 Processing chromosome scaffold30524 INFO [2014-03-08 06:14:55,925] [Preprocessor.java:241] [main] Processing chromosome scaffold30556 Processing chromosome scaffold30556 INFO [2014-03-08 06:14:55,958] [Preprocessor.java:241] [main] Processing chromosome scaffold30596 Processing chromosome scaffold30596 INFO [2014-03-08 06:14:55,979] [Preprocessor.java:241] [main] Processing chromosome scaffold30598 Processing chromosome scaffold30598 INFO [2014-03-08 06:14:56,016] [Preprocessor.java:241] [main] Processing chromosome scaffold306 Processing chromosome scaffold306 INFO [2014-03-08 06:14:56,021] [Preprocessor.java:241] [main] Processing chromosome scaffold30610 Processing chromosome scaffold30610 INFO [2014-03-08 06:14:56,039] [Preprocessor.java:241] [main] Processing chromosome scaffold30616 Processing chromosome scaffold30616 INFO [2014-03-08 06:14:56,053] [Preprocessor.java:241] [main] Processing chromosome scaffold30654 Processing chromosome scaffold30654 INFO [2014-03-08 06:14:56,080] [Preprocessor.java:241] [main] Processing chromosome scaffold30658 Processing chromosome scaffold30658 INFO [2014-03-08 06:14:56,093] [Preprocessor.java:241] [main] Processing chromosome scaffold30672 Processing chromosome scaffold30672 INFO [2014-03-08 06:14:56,125] [Preprocessor.java:241] [main] Processing chromosome scaffold30678 Processing chromosome scaffold30678 INFO [2014-03-08 06:14:56,141] [Preprocessor.java:241] [main] Processing chromosome scaffold30682 Processing chromosome scaffold30682 INFO [2014-03-08 06:14:56,156] [Preprocessor.java:241] [main] Processing chromosome scaffold30690 Processing chromosome scaffold30690 INFO [2014-03-08 06:14:56,158] [Preprocessor.java:241] [main] Processing chromosome scaffold307 Processing chromosome scaffold307 INFO [2014-03-08 06:14:56,167] [Preprocessor.java:241] [main] Processing chromosome scaffold30702 Processing chromosome scaffold30702 INFO [2014-03-08 06:14:56,171] [Preprocessor.java:241] [main] Processing chromosome scaffold30712 Processing chromosome scaffold30712 INFO [2014-03-08 06:14:56,177] [Preprocessor.java:241] [main] Processing chromosome scaffold30716 Processing chromosome scaffold30716 INFO [2014-03-08 06:14:56,186] [Preprocessor.java:241] [main] Processing chromosome scaffold30744 Processing chromosome scaffold30744 INFO [2014-03-08 06:14:56,194] [Preprocessor.java:241] [main] Processing chromosome scaffold30774 Processing chromosome scaffold30774 INFO [2014-03-08 06:14:56,232] [Preprocessor.java:241] [main] Processing chromosome scaffold30794 Processing chromosome scaffold30794 INFO [2014-03-08 06:14:56,242] [Preprocessor.java:241] [main] Processing chromosome scaffold30798 Processing chromosome scaffold30798 INFO [2014-03-08 06:14:56,245] [Preprocessor.java:241] [main] Processing chromosome scaffold308 Processing chromosome scaffold308 INFO [2014-03-08 06:14:56,296] [Preprocessor.java:241] [main] Processing chromosome scaffold30814 Processing chromosome scaffold30814 INFO [2014-03-08 06:14:56,304] [Preprocessor.java:241] [main] Processing chromosome scaffold30818 Processing chromosome scaffold30818 INFO [2014-03-08 06:14:56,325] [Preprocessor.java:241] [main] Processing chromosome scaffold30826 Processing chromosome scaffold30826 INFO [2014-03-08 06:14:56,332] [Preprocessor.java:241] [main] Processing chromosome scaffold30854 Processing chromosome scaffold30854 INFO [2014-03-08 06:14:56,342] [Preprocessor.java:241] [main] Processing chromosome scaffold30894 Processing chromosome scaffold30894 INFO [2014-03-08 06:14:56,352] [Preprocessor.java:241] [main] Processing chromosome scaffold309 Processing chromosome scaffold309 INFO [2014-03-08 06:14:56,394] [Preprocessor.java:241] [main] Processing chromosome scaffold30902 Processing chromosome scaffold30902 INFO [2014-03-08 06:14:56,404] [Preprocessor.java:241] [main] Processing chromosome scaffold30922 Processing chromosome scaffold30922 INFO [2014-03-08 06:14:56,436] [Preprocessor.java:241] [main] Processing chromosome scaffold30976 Processing chromosome scaffold30976 INFO [2014-03-08 06:14:56,442] [Preprocessor.java:241] [main] Processing chromosome scaffold31 Processing chromosome scaffold31 INFO [2014-03-08 06:14:56,471] [Preprocessor.java:241] [main] Processing chromosome scaffold310 Processing chromosome scaffold310 INFO [2014-03-08 06:14:56,478] [Preprocessor.java:241] [main] Processing chromosome scaffold31002 Processing chromosome scaffold31002 INFO [2014-03-08 06:14:56,498] [Preprocessor.java:241] [main] Processing chromosome scaffold31008 Processing chromosome scaffold31008 INFO [2014-03-08 06:14:56,503] [Preprocessor.java:241] [main] Processing chromosome scaffold31018 Processing chromosome scaffold31018 INFO [2014-03-08 06:14:56,520] [Preprocessor.java:241] [main] Processing chromosome scaffold31032 Processing chromosome scaffold31032 INFO [2014-03-08 06:14:56,527] [Preprocessor.java:241] [main] Processing chromosome scaffold31038 Processing chromosome scaffold31038 INFO [2014-03-08 06:14:56,560] [Preprocessor.java:241] [main] Processing chromosome scaffold31080 Processing chromosome scaffold31080 INFO [2014-03-08 06:14:56,609] [Preprocessor.java:241] [main] Processing chromosome scaffold31090 Processing chromosome scaffold31090 INFO [2014-03-08 06:14:56,626] [Preprocessor.java:241] [main] Processing chromosome scaffold31098 Processing chromosome scaffold31098 INFO [2014-03-08 06:14:56,651] [Preprocessor.java:241] [main] Processing chromosome scaffold311 Processing chromosome scaffold311 INFO [2014-03-08 06:14:56,684] [Preprocessor.java:241] [main] Processing chromosome scaffold312 Processing chromosome scaffold312 INFO [2014-03-08 06:14:56,703] [Preprocessor.java:241] [main] Processing chromosome scaffold31208 Processing chromosome scaffold31208 INFO [2014-03-08 06:14:56,718] [Preprocessor.java:241] [main] Processing chromosome scaffold31212 Processing chromosome scaffold31212 INFO [2014-03-08 06:14:56,742] [Preprocessor.java:241] [main] Processing chromosome scaffold31222 Processing chromosome scaffold31222 INFO [2014-03-08 06:14:56,765] [Preprocessor.java:241] [main] Processing chromosome scaffold31228 Processing chromosome scaffold31228 INFO [2014-03-08 06:14:56,768] [Preprocessor.java:241] [main] Processing chromosome scaffold31230 Processing chromosome scaffold31230 INFO [2014-03-08 06:14:56,793] [Preprocessor.java:241] [main] Processing chromosome scaffold31238 Processing chromosome scaffold31238 INFO [2014-03-08 06:14:56,808] [Preprocessor.java:241] [main] Processing chromosome scaffold31250 Processing chromosome scaffold31250 INFO [2014-03-08 06:14:56,843] [Preprocessor.java:241] [main] Processing chromosome scaffold31258 Processing chromosome scaffold31258 INFO [2014-03-08 06:14:56,861] [Preprocessor.java:241] [main] Processing chromosome scaffold31282 Processing chromosome scaffold31282 INFO [2014-03-08 06:14:56,876] [Preprocessor.java:241] [main] Processing chromosome scaffold313 Processing chromosome scaffold313 INFO [2014-03-08 06:14:57,105] [Preprocessor.java:241] [main] Processing chromosome scaffold31308 Processing chromosome scaffold31308 INFO [2014-03-08 06:14:57,122] [Preprocessor.java:241] [main] Processing chromosome scaffold31318 Processing chromosome scaffold31318 INFO [2014-03-08 06:14:57,148] [Preprocessor.java:241] [main] Processing chromosome scaffold31320 Processing chromosome scaffold31320 INFO [2014-03-08 06:14:57,157] [Preprocessor.java:241] [main] Processing chromosome scaffold31330 Processing chromosome scaffold31330 INFO [2014-03-08 06:14:57,176] [Preprocessor.java:241] [main] Processing chromosome scaffold31334 Processing chromosome scaffold31334 INFO [2014-03-08 06:14:57,186] [Preprocessor.java:241] [main] Processing chromosome scaffold31348 Processing chromosome scaffold31348 INFO [2014-03-08 06:14:57,212] [Preprocessor.java:241] [main] Processing chromosome scaffold31376 Processing chromosome scaffold31376 INFO [2014-03-08 06:14:57,237] [Preprocessor.java:241] [main] Processing chromosome scaffold31378 Processing chromosome scaffold31378 INFO [2014-03-08 06:14:57,244] [Preprocessor.java:241] [main] Processing chromosome scaffold31382 Processing chromosome scaffold31382 INFO [2014-03-08 06:14:57,259] [Preprocessor.java:241] [main] Processing chromosome scaffold31388 Processing chromosome scaffold31388 INFO [2014-03-08 06:14:57,283] [Preprocessor.java:241] [main] Processing chromosome scaffold31392 Processing chromosome scaffold31392 INFO [2014-03-08 06:14:57,287] [Preprocessor.java:241] [main] Processing chromosome scaffold314 Processing chromosome scaffold314 INFO [2014-03-08 06:14:57,308] [Preprocessor.java:241] [main] Processing chromosome scaffold31440 Processing chromosome scaffold31440 INFO [2014-03-08 06:14:57,324] [Preprocessor.java:241] [main] Processing chromosome scaffold31454 Processing chromosome scaffold31454 INFO [2014-03-08 06:14:57,328] [Preprocessor.java:241] [main] Processing chromosome scaffold31464 Processing chromosome scaffold31464 INFO [2014-03-08 06:14:57,332] [Preprocessor.java:241] [main] Processing chromosome scaffold31478 Processing chromosome scaffold31478 INFO [2014-03-08 06:14:57,346] [Preprocessor.java:241] [main] Processing chromosome scaffold31484 Processing chromosome scaffold31484 INFO [2014-03-08 06:14:57,367] [Preprocessor.java:241] [main] Processing chromosome scaffold315 Processing chromosome scaffold315 INFO [2014-03-08 06:14:57,554] [Preprocessor.java:241] [main] Processing chromosome scaffold31512 Processing chromosome scaffold31512 INFO [2014-03-08 06:14:57,577] [Preprocessor.java:241] [main] Processing chromosome scaffold31514 Processing chromosome scaffold31514 INFO [2014-03-08 06:14:57,606] [Preprocessor.java:241] [main] Processing chromosome scaffold31524 Processing chromosome scaffold31524 INFO [2014-03-08 06:14:57,617] [Preprocessor.java:241] [main] Processing chromosome scaffold31534 Processing chromosome scaffold31534 INFO [2014-03-08 06:14:57,642] [Preprocessor.java:241] [main] Processing chromosome scaffold31538 Processing chromosome scaffold31538 INFO [2014-03-08 06:14:57,690] [Preprocessor.java:241] [main] Processing chromosome scaffold31556 Processing chromosome scaffold31556 INFO [2014-03-08 06:14:57,721] [Preprocessor.java:241] [main] Processing chromosome scaffold316 Processing chromosome scaffold316 INFO [2014-03-08 06:14:57,724] [Preprocessor.java:241] [main] Processing chromosome scaffold31624 Processing chromosome scaffold31624 INFO [2014-03-08 06:14:57,728] [Preprocessor.java:241] [main] Processing chromosome scaffold31638 Processing chromosome scaffold31638 INFO [2014-03-08 06:14:57,736] [Preprocessor.java:241] [main] Processing chromosome scaffold31640 Processing chromosome scaffold31640 INFO [2014-03-08 06:14:57,738] [Preprocessor.java:241] [main] Processing chromosome scaffold31660 Processing chromosome scaffold31660 INFO [2014-03-08 06:14:57,751] [Preprocessor.java:241] [main] Processing chromosome scaffold31680 Processing chromosome scaffold31680 INFO [2014-03-08 06:14:57,780] [Preprocessor.java:241] [main] Processing chromosome scaffold31684 Processing chromosome scaffold31684 INFO [2014-03-08 06:14:57,804] [Preprocessor.java:241] [main] Processing chromosome scaffold317 Processing chromosome scaffold317 INFO [2014-03-08 06:14:57,840] [Preprocessor.java:241] [main] Processing chromosome scaffold31716 Processing chromosome scaffold31716 INFO [2014-03-08 06:14:57,850] [Preprocessor.java:241] [main] Processing chromosome scaffold31720 Processing chromosome scaffold31720 INFO [2014-03-08 06:14:57,854] [Preprocessor.java:241] [main] Processing chromosome scaffold31736 Processing chromosome scaffold31736 INFO [2014-03-08 06:14:57,880] [Preprocessor.java:241] [main] Processing chromosome scaffold31748 Processing chromosome scaffold31748 INFO [2014-03-08 06:14:57,883] [Preprocessor.java:241] [main] Processing chromosome scaffold31752 Processing chromosome scaffold31752 INFO [2014-03-08 06:14:57,898] [Preprocessor.java:241] [main] Processing chromosome scaffold31756 Processing chromosome scaffold31756 INFO [2014-03-08 06:14:57,920] [Preprocessor.java:241] [main] Processing chromosome scaffold31770 Processing chromosome scaffold31770 INFO [2014-03-08 06:14:57,940] [Preprocessor.java:241] [main] Processing chromosome scaffold31784 Processing chromosome scaffold31784 INFO [2014-03-08 06:14:57,957] [Preprocessor.java:241] [main] Processing chromosome scaffold31792 Processing chromosome scaffold31792 INFO [2014-03-08 06:14:57,960] [Preprocessor.java:241] [main] Processing chromosome scaffold318 Processing chromosome scaffold318 INFO [2014-03-08 06:14:57,988] [Preprocessor.java:241] [main] Processing chromosome scaffold31816 Processing chromosome scaffold31816 INFO [2014-03-08 06:14:57,993] [Preprocessor.java:241] [main] Processing chromosome scaffold31834 Processing chromosome scaffold31834 INFO [2014-03-08 06:14:57,994] [Preprocessor.java:241] [main] Processing chromosome scaffold31842 Processing chromosome scaffold31842 INFO [2014-03-08 06:14:58,002] [Preprocessor.java:241] [main] Processing chromosome scaffold31864 Processing chromosome scaffold31864 INFO [2014-03-08 06:14:58,010] [Preprocessor.java:241] [main] Processing chromosome scaffold31880 Processing chromosome scaffold31880 INFO [2014-03-08 06:14:58,014] [Preprocessor.java:241] [main] Processing chromosome scaffold319 Processing chromosome scaffold319 INFO [2014-03-08 06:14:58,018] [Preprocessor.java:241] [main] Processing chromosome scaffold31900 Processing chromosome scaffold31900 INFO [2014-03-08 06:14:58,027] [Preprocessor.java:241] [main] Processing chromosome scaffold31920 Processing chromosome scaffold31920 INFO [2014-03-08 06:14:58,058] [Preprocessor.java:241] [main] Processing chromosome scaffold31954 Processing chromosome scaffold31954 INFO [2014-03-08 06:14:58,075] [Preprocessor.java:241] [main] Processing chromosome scaffold31956 Processing chromosome scaffold31956 INFO [2014-03-08 06:14:58,083] [Preprocessor.java:241] [main] Processing chromosome scaffold32 Processing chromosome scaffold32 INFO [2014-03-08 06:14:58,163] [Preprocessor.java:241] [main] Processing chromosome scaffold320 Processing chromosome scaffold320 INFO [2014-03-08 06:14:58,176] [Preprocessor.java:241] [main] Processing chromosome scaffold32014 Processing chromosome scaffold32014 INFO [2014-03-08 06:14:58,202] [Preprocessor.java:241] [main] Processing chromosome scaffold32024 Processing chromosome scaffold32024 INFO [2014-03-08 06:14:58,204] [Preprocessor.java:241] [main] Processing chromosome scaffold32030 Processing chromosome scaffold32030 INFO [2014-03-08 06:14:58,216] [Preprocessor.java:241] [main] Processing chromosome scaffold32048 Processing chromosome scaffold32048 INFO [2014-03-08 06:14:58,223] [Preprocessor.java:241] [main] Processing chromosome scaffold32064 Processing chromosome scaffold32064 INFO [2014-03-08 06:14:58,237] [Preprocessor.java:241] [main] Processing chromosome scaffold32086 Processing chromosome scaffold32086 INFO [2014-03-08 06:14:58,247] [Preprocessor.java:241] [main] Processing chromosome scaffold32094 Processing chromosome scaffold32094 INFO [2014-03-08 06:14:58,250] [Preprocessor.java:241] [main] Processing chromosome scaffold32096 Processing chromosome scaffold32096 INFO [2014-03-08 06:14:58,257] [Preprocessor.java:241] [main] Processing chromosome scaffold321 Processing chromosome scaffold321 INFO [2014-03-08 06:14:58,339] [Preprocessor.java:241] [main] Processing chromosome scaffold32102 Processing chromosome scaffold32102 INFO [2014-03-08 06:14:58,360] [Preprocessor.java:241] [main] Processing chromosome scaffold32118 Processing chromosome scaffold32118 INFO [2014-03-08 06:14:58,371] [Preprocessor.java:241] [main] Processing chromosome scaffold32120 Processing chromosome scaffold32120 INFO [2014-03-08 06:14:58,380] [Preprocessor.java:241] [main] Processing chromosome scaffold32140 Processing chromosome scaffold32140 INFO [2014-03-08 06:14:58,384] [Preprocessor.java:241] [main] Processing chromosome scaffold32142 Processing chromosome scaffold32142 INFO [2014-03-08 06:14:58,386] [Preprocessor.java:241] [main] Processing chromosome scaffold32160 Processing chromosome scaffold32160 INFO [2014-03-08 06:14:58,400] [Preprocessor.java:241] [main] Processing chromosome scaffold32178 Processing chromosome scaffold32178 INFO [2014-03-08 06:14:58,414] [Preprocessor.java:241] [main] Processing chromosome scaffold32180 Processing chromosome scaffold32180 INFO [2014-03-08 06:14:58,428] [Preprocessor.java:241] [main] Processing chromosome scaffold32192 Processing chromosome scaffold32192 INFO [2014-03-08 06:14:58,445] [Preprocessor.java:241] [main] Processing chromosome scaffold322 Processing chromosome scaffold322 INFO [2014-03-08 06:14:58,478] [Preprocessor.java:241] [main] Processing chromosome scaffold32202 Processing chromosome scaffold32202 INFO [2014-03-08 06:14:58,506] [Preprocessor.java:241] [main] Processing chromosome scaffold32230 Processing chromosome scaffold32230 INFO [2014-03-08 06:14:58,514] [Preprocessor.java:241] [main] Processing chromosome scaffold32252 Processing chromosome scaffold32252 INFO [2014-03-08 06:14:58,523] [Preprocessor.java:241] [main] Processing chromosome scaffold32258 Processing chromosome scaffold32258 INFO [2014-03-08 06:14:58,529] [Preprocessor.java:241] [main] Processing chromosome scaffold32282 Processing chromosome scaffold32282 INFO [2014-03-08 06:14:58,538] [Preprocessor.java:241] [main] Processing chromosome scaffold323 Processing chromosome scaffold323 INFO [2014-03-08 06:14:58,559] [Preprocessor.java:241] [main] Processing chromosome scaffold32300 Processing chromosome scaffold32300 INFO [2014-03-08 06:14:58,590] [Preprocessor.java:241] [main] Processing chromosome scaffold32330 Processing chromosome scaffold32330 INFO [2014-03-08 06:14:58,603] [Preprocessor.java:241] [main] Processing chromosome scaffold32342 Processing chromosome scaffold32342 INFO [2014-03-08 06:14:58,612] [Preprocessor.java:241] [main] Processing chromosome scaffold32346 Processing chromosome scaffold32346 INFO [2014-03-08 06:14:58,650] [Preprocessor.java:241] [main] Processing chromosome scaffold32356 Processing chromosome scaffold32356 INFO [2014-03-08 06:14:58,673] [Preprocessor.java:241] [main] Processing chromosome scaffold324 Processing chromosome scaffold324 INFO [2014-03-08 06:14:58,735] [Preprocessor.java:241] [main] Processing chromosome scaffold32410 Processing chromosome scaffold32410 INFO [2014-03-08 06:14:58,756] [Preprocessor.java:241] [main] Processing chromosome scaffold32436 Processing chromosome scaffold32436 INFO [2014-03-08 06:14:58,761] [Preprocessor.java:241] [main] Processing chromosome scaffold32452 Processing chromosome scaffold32452 INFO [2014-03-08 06:14:58,764] [Preprocessor.java:241] [main] Processing chromosome scaffold32470 Processing chromosome scaffold32470 INFO [2014-03-08 06:14:58,771] [Preprocessor.java:241] [main] Processing chromosome scaffold32488 Processing chromosome scaffold32488 INFO [2014-03-08 06:14:58,783] [Preprocessor.java:241] [main] Processing chromosome scaffold32494 Processing chromosome scaffold32494 INFO [2014-03-08 06:14:58,793] [Preprocessor.java:241] [main] Processing chromosome scaffold325 Processing chromosome scaffold325 INFO [2014-03-08 06:14:58,807] [Preprocessor.java:241] [main] Processing chromosome scaffold32520 Processing chromosome scaffold32520 INFO [2014-03-08 06:14:58,828] [Preprocessor.java:241] [main] Processing chromosome scaffold32526 Processing chromosome scaffold32526 INFO [2014-03-08 06:14:58,852] [Preprocessor.java:241] [main] Processing chromosome scaffold32530 Processing chromosome scaffold32530 INFO [2014-03-08 06:14:58,862] [Preprocessor.java:241] [main] Processing chromosome scaffold32546 Processing chromosome scaffold32546 INFO [2014-03-08 06:14:58,867] [Preprocessor.java:241] [main] Processing chromosome scaffold32566 Processing chromosome scaffold32566 INFO [2014-03-08 06:14:58,876] [Preprocessor.java:241] [main] Processing chromosome scaffold32586 Processing chromosome scaffold32586 INFO [2014-03-08 06:14:58,886] [Preprocessor.java:241] [main] Processing chromosome scaffold326 Processing chromosome scaffold326 INFO [2014-03-08 06:14:58,919] [Preprocessor.java:241] [main] Processing chromosome scaffold32604 Processing chromosome scaffold32604 INFO [2014-03-08 06:14:58,926] [Preprocessor.java:241] [main] Processing chromosome scaffold32624 Processing chromosome scaffold32624 INFO [2014-03-08 06:14:58,940] [Preprocessor.java:241] [main] Processing chromosome scaffold32632 Processing chromosome scaffold32632 INFO [2014-03-08 06:14:58,948] [Preprocessor.java:241] [main] Processing chromosome scaffold32642 Processing chromosome scaffold32642 INFO [2014-03-08 06:14:58,961] [Preprocessor.java:241] [main] Processing chromosome scaffold32646 Processing chromosome scaffold32646 INFO [2014-03-08 06:14:58,977] [Preprocessor.java:241] [main] Processing chromosome scaffold32666 Processing chromosome scaffold32666 INFO [2014-03-08 06:14:59,003] [Preprocessor.java:241] [main] Processing chromosome scaffold32686 Processing chromosome scaffold32686 INFO [2014-03-08 06:14:59,028] [Preprocessor.java:241] [main] Processing chromosome scaffold32688 Processing chromosome scaffold32688 INFO [2014-03-08 06:14:59,063] [Preprocessor.java:241] [main] Processing chromosome scaffold327 Processing chromosome scaffold327 INFO [2014-03-08 06:14:59,071] [Preprocessor.java:241] [main] Processing chromosome scaffold32708 Processing chromosome scaffold32708 INFO [2014-03-08 06:14:59,089] [Preprocessor.java:241] [main] Processing chromosome scaffold32718 Processing chromosome scaffold32718 INFO [2014-03-08 06:14:59,090] [Preprocessor.java:241] [main] Processing chromosome scaffold32726 Processing chromosome scaffold32726 INFO [2014-03-08 06:14:59,108] [Preprocessor.java:241] [main] Processing chromosome scaffold32754 Processing chromosome scaffold32754 INFO [2014-03-08 06:14:59,116] [Preprocessor.java:241] [main] Processing chromosome scaffold32768 Processing chromosome scaffold32768 INFO [2014-03-08 06:14:59,139] [Preprocessor.java:241] [main] Processing chromosome scaffold32770 Processing chromosome scaffold32770 INFO [2014-03-08 06:14:59,151] [Preprocessor.java:241] [main] Processing chromosome scaffold32782 Processing chromosome scaffold32782 INFO [2014-03-08 06:14:59,162] [Preprocessor.java:241] [main] Processing chromosome scaffold32786 Processing chromosome scaffold32786 INFO [2014-03-08 06:14:59,180] [Preprocessor.java:241] [main] Processing chromosome scaffold328 Processing chromosome scaffold328 INFO [2014-03-08 06:14:59,192] [Preprocessor.java:241] [main] Processing chromosome scaffold32822 Processing chromosome scaffold32822 INFO [2014-03-08 06:14:59,197] [Preprocessor.java:241] [main] Processing chromosome scaffold32844 Processing chromosome scaffold32844 INFO [2014-03-08 06:14:59,208] [Preprocessor.java:241] [main] Processing chromosome scaffold32850 Processing chromosome scaffold32850 INFO [2014-03-08 06:14:59,240] [Preprocessor.java:241] [main] Processing chromosome scaffold32864 Processing chromosome scaffold32864 INFO [2014-03-08 06:14:59,271] [Preprocessor.java:241] [main] Processing chromosome scaffold32894 Processing chromosome scaffold32894 INFO [2014-03-08 06:14:59,275] [Preprocessor.java:241] [main] Processing chromosome scaffold329 Processing chromosome scaffold329 INFO [2014-03-08 06:14:59,299] [Preprocessor.java:241] [main] Processing chromosome scaffold32900 Processing chromosome scaffold32900 INFO [2014-03-08 06:14:59,311] [Preprocessor.java:241] [main] Processing chromosome scaffold32912 Processing chromosome scaffold32912 INFO [2014-03-08 06:14:59,327] [Preprocessor.java:241] [main] Processing chromosome scaffold32922 Processing chromosome scaffold32922 INFO [2014-03-08 06:14:59,345] [Preprocessor.java:241] [main] Processing chromosome scaffold32956 Processing chromosome scaffold32956 INFO [2014-03-08 06:14:59,360] [Preprocessor.java:241] [main] Processing chromosome scaffold32970 Processing chromosome scaffold32970 INFO [2014-03-08 06:14:59,365] [Preprocessor.java:241] [main] Processing chromosome scaffold330 Processing chromosome scaffold330 INFO [2014-03-08 06:14:59,391] [Preprocessor.java:241] [main] Processing chromosome scaffold33010 Processing chromosome scaffold33010 INFO [2014-03-08 06:14:59,423] [Preprocessor.java:241] [main] Processing chromosome scaffold33026 Processing chromosome scaffold33026 INFO [2014-03-08 06:14:59,429] [Preprocessor.java:241] [main] Processing chromosome scaffold33030 Processing chromosome scaffold33030 INFO [2014-03-08 06:14:59,449] [Preprocessor.java:241] [main] Processing chromosome scaffold33032 Processing chromosome scaffold33032 INFO [2014-03-08 06:14:59,463] [Preprocessor.java:241] [main] Processing chromosome scaffold33036 Processing chromosome scaffold33036 INFO [2014-03-08 06:14:59,475] [Preprocessor.java:241] [main] Processing chromosome scaffold33042 Processing chromosome scaffold33042 INFO [2014-03-08 06:14:59,480] [Preprocessor.java:241] [main] Processing chromosome scaffold33046 Processing chromosome scaffold33046 INFO [2014-03-08 06:14:59,494] [Preprocessor.java:241] [main] Processing chromosome scaffold33048 Processing chromosome scaffold33048 INFO [2014-03-08 06:14:59,503] [Preprocessor.java:241] [main] Processing chromosome scaffold33050 Processing chromosome scaffold33050 INFO [2014-03-08 06:14:59,516] [Preprocessor.java:241] [main] Processing chromosome scaffold33052 Processing chromosome scaffold33052 INFO [2014-03-08 06:14:59,525] [Preprocessor.java:241] [main] Processing chromosome scaffold33056 Processing chromosome scaffold33056 INFO [2014-03-08 06:14:59,535] [Preprocessor.java:241] [main] Processing chromosome scaffold33064 Processing chromosome scaffold33064 INFO [2014-03-08 06:14:59,543] [Preprocessor.java:241] [main] Processing chromosome scaffold33066 Processing chromosome scaffold33066 INFO [2014-03-08 06:14:59,568] [Preprocessor.java:241] [main] Processing chromosome scaffold33072 Processing chromosome scaffold33072 INFO [2014-03-08 06:14:59,572] [Preprocessor.java:241] [main] Processing chromosome scaffold33074 Processing chromosome scaffold33074 INFO [2014-03-08 06:14:59,582] [Preprocessor.java:241] [main] Processing chromosome scaffold33082 Processing chromosome scaffold33082 INFO [2014-03-08 06:14:59,584] [Preprocessor.java:241] [main] Processing chromosome scaffold33090 Processing chromosome scaffold33090 INFO [2014-03-08 06:14:59,592] [Preprocessor.java:241] [main] Processing chromosome scaffold33094 Processing chromosome scaffold33094 INFO [2014-03-08 06:14:59,600] [Preprocessor.java:241] [main] Processing chromosome scaffold331 Processing chromosome scaffold331 INFO [2014-03-08 06:14:59,623] [Preprocessor.java:241] [main] Processing chromosome scaffold33108 Processing chromosome scaffold33108 INFO [2014-03-08 06:14:59,653] [Preprocessor.java:241] [main] Processing chromosome scaffold33118 Processing chromosome scaffold33118 INFO [2014-03-08 06:14:59,666] [Preprocessor.java:241] [main] Processing chromosome scaffold33122 Processing chromosome scaffold33122 INFO [2014-03-08 06:14:59,682] [Preprocessor.java:241] [main] Processing chromosome scaffold33132 Processing chromosome scaffold33132 INFO [2014-03-08 06:14:59,713] [Preprocessor.java:241] [main] Processing chromosome scaffold33134 Processing chromosome scaffold33134 INFO [2014-03-08 06:14:59,772] [Preprocessor.java:241] [main] Processing chromosome scaffold33146 Processing chromosome scaffold33146 INFO [2014-03-08 06:14:59,787] [Preprocessor.java:241] [main] Processing chromosome scaffold33154 Processing chromosome scaffold33154 INFO [2014-03-08 06:14:59,800] [Preprocessor.java:241] [main] Processing chromosome scaffold33158 Processing chromosome scaffold33158 INFO [2014-03-08 06:14:59,809] [Preprocessor.java:241] [main] Processing chromosome scaffold33164 Processing chromosome scaffold33164 INFO [2014-03-08 06:14:59,822] [Preprocessor.java:241] [main] Processing chromosome scaffold33178 Processing chromosome scaffold33178 INFO [2014-03-08 06:14:59,834] [Preprocessor.java:241] [main] Processing chromosome scaffold33184 Processing chromosome scaffold33184 INFO [2014-03-08 06:14:59,852] [Preprocessor.java:241] [main] Processing chromosome scaffold33192 Processing chromosome scaffold33192 INFO [2014-03-08 06:14:59,892] [Preprocessor.java:241] [main] Processing chromosome scaffold332 Processing chromosome scaffold332 INFO [2014-03-08 06:14:59,986] [Preprocessor.java:241] [main] Processing chromosome scaffold33210 Processing chromosome scaffold33210 INFO [2014-03-08 06:14:59,993] [Preprocessor.java:241] [main] Processing chromosome scaffold33224 Processing chromosome scaffold33224 INFO [2014-03-08 06:14:59,996] [Preprocessor.java:241] [main] Processing chromosome scaffold33238 Processing chromosome scaffold33238 INFO [2014-03-08 06:15:00,010] [Preprocessor.java:241] [main] Processing chromosome scaffold33242 Processing chromosome scaffold33242 INFO [2014-03-08 06:15:00,015] [Preprocessor.java:241] [main] Processing chromosome scaffold33248 Processing chromosome scaffold33248 INFO [2014-03-08 06:15:00,045] [Preprocessor.java:241] [main] Processing chromosome scaffold33254 Processing chromosome scaffold33254 INFO [2014-03-08 06:15:00,068] [Preprocessor.java:241] [main] Processing chromosome scaffold33272 Processing chromosome scaffold33272 INFO [2014-03-08 06:15:00,070] [Preprocessor.java:241] [main] Processing chromosome scaffold333 Processing chromosome scaffold333 INFO [2014-03-08 06:15:00,082] [Preprocessor.java:241] [main] Processing chromosome scaffold33304 Processing chromosome scaffold33304 INFO [2014-03-08 06:15:00,087] [Preprocessor.java:241] [main] Processing chromosome scaffold33340 Processing chromosome scaffold33340 INFO [2014-03-08 06:15:00,103] [Preprocessor.java:241] [main] Processing chromosome scaffold33342 Processing chromosome scaffold33342 INFO [2014-03-08 06:15:00,118] [Preprocessor.java:241] [main] Processing chromosome scaffold33346 Processing chromosome scaffold33346 INFO [2014-03-08 06:15:00,133] [Preprocessor.java:241] [main] Processing chromosome scaffold33352 Processing chromosome scaffold33352 INFO [2014-03-08 06:15:00,167] [Preprocessor.java:241] [main] Processing chromosome scaffold33360 Processing chromosome scaffold33360 INFO [2014-03-08 06:15:00,189] [Preprocessor.java:241] [main] Processing chromosome scaffold33364 Processing chromosome scaffold33364 INFO [2014-03-08 06:15:00,193] [Preprocessor.java:241] [main] Processing chromosome scaffold33382 Processing chromosome scaffold33382 INFO [2014-03-08 06:15:00,206] [Preprocessor.java:241] [main] Processing chromosome scaffold33390 Processing chromosome scaffold33390 INFO [2014-03-08 06:15:00,247] [Preprocessor.java:241] [main] Processing chromosome scaffold334 Processing chromosome scaffold334 INFO [2014-03-08 06:15:00,443] [Preprocessor.java:241] [main] Processing chromosome scaffold33412 Processing chromosome scaffold33412 INFO [2014-03-08 06:15:00,445] [Preprocessor.java:241] [main] Processing chromosome scaffold33414 Processing chromosome scaffold33414 INFO [2014-03-08 06:15:00,463] [Preprocessor.java:241] [main] Processing chromosome scaffold33424 Processing chromosome scaffold33424 INFO [2014-03-08 06:15:00,485] [Preprocessor.java:241] [main] Processing chromosome scaffold33428 Processing chromosome scaffold33428 INFO [2014-03-08 06:15:00,489] [Preprocessor.java:241] [main] Processing chromosome scaffold33432 Processing chromosome scaffold33432 INFO [2014-03-08 06:15:00,491] [Preprocessor.java:241] [main] Processing chromosome scaffold33454 Processing chromosome scaffold33454 INFO [2014-03-08 06:15:00,528] [Preprocessor.java:241] [main] Processing chromosome scaffold33462 Processing chromosome scaffold33462 INFO [2014-03-08 06:15:00,536] [Preprocessor.java:241] [main] Processing chromosome scaffold33466 Processing chromosome scaffold33466 INFO [2014-03-08 06:15:00,542] [Preprocessor.java:241] [main] Processing chromosome scaffold33486 Processing chromosome scaffold33486 INFO [2014-03-08 06:15:00,550] [Preprocessor.java:241] [main] Processing chromosome scaffold33498 Processing chromosome scaffold33498 INFO [2014-03-08 06:15:00,581] [Preprocessor.java:241] [main] Processing chromosome scaffold335 Processing chromosome scaffold335 INFO [2014-03-08 06:15:00,731] [Preprocessor.java:241] [main] Processing chromosome scaffold33500 Processing chromosome scaffold33500 INFO [2014-03-08 06:15:00,746] [Preprocessor.java:241] [main] Processing chromosome scaffold33512 Processing chromosome scaffold33512 INFO [2014-03-08 06:15:00,757] [Preprocessor.java:241] [main] Processing chromosome scaffold33518 Processing chromosome scaffold33518 INFO [2014-03-08 06:15:00,766] [Preprocessor.java:241] [main] Processing chromosome scaffold33530 Processing chromosome scaffold33530 INFO [2014-03-08 06:15:00,787] [Preprocessor.java:241] [main] Processing chromosome scaffold33554 Processing chromosome scaffold33554 INFO [2014-03-08 06:15:00,790] [Preprocessor.java:241] [main] Processing chromosome scaffold33584 Processing chromosome scaffold33584 INFO [2014-03-08 06:15:00,810] [Preprocessor.java:241] [main] Processing chromosome scaffold33588 Processing chromosome scaffold33588 INFO [2014-03-08 06:15:00,818] [Preprocessor.java:241] [main] Processing chromosome scaffold33590 Processing chromosome scaffold33590 INFO [2014-03-08 06:15:00,842] [Preprocessor.java:241] [main] Processing chromosome scaffold33594 Processing chromosome scaffold33594 INFO [2014-03-08 06:15:00,874] [Preprocessor.java:241] [main] Processing chromosome scaffold336 Processing chromosome scaffold336 INFO [2014-03-08 06:15:00,960] [Preprocessor.java:241] [main] Processing chromosome scaffold33610 Processing chromosome scaffold33610 INFO [2014-03-08 06:15:00,965] [Preprocessor.java:241] [main] Processing chromosome scaffold33618 Processing chromosome scaffold33618 INFO [2014-03-08 06:15:00,983] [Preprocessor.java:241] [main] Processing chromosome scaffold33628 Processing chromosome scaffold33628 INFO [2014-03-08 06:15:00,989] [Preprocessor.java:241] [main] Processing chromosome scaffold33638 Processing chromosome scaffold33638 INFO [2014-03-08 06:15:01,015] [Preprocessor.java:241] [main] Processing chromosome scaffold33640 Processing chromosome scaffold33640 INFO [2014-03-08 06:15:01,022] [Preprocessor.java:241] [main] Processing chromosome scaffold33656 Processing chromosome scaffold33656 INFO [2014-03-08 06:15:01,035] [Preprocessor.java:241] [main] Processing chromosome scaffold33684 Processing chromosome scaffold33684 INFO [2014-03-08 06:15:01,057] [Preprocessor.java:241] [main] Processing chromosome scaffold337 Processing chromosome scaffold337 INFO [2014-03-08 06:15:01,232] [Preprocessor.java:241] [main] Processing chromosome scaffold33704 Processing chromosome scaffold33704 INFO [2014-03-08 06:15:01,246] [Preprocessor.java:241] [main] Processing chromosome scaffold33706 Processing chromosome scaffold33706 INFO [2014-03-08 06:15:01,249] [Preprocessor.java:241] [main] Processing chromosome scaffold33724 Processing chromosome scaffold33724 INFO [2014-03-08 06:15:01,261] [Preprocessor.java:241] [main] Processing chromosome scaffold33732 Processing chromosome scaffold33732 INFO [2014-03-08 06:15:01,292] [Preprocessor.java:241] [main] Processing chromosome scaffold33736 Processing chromosome scaffold33736 INFO [2014-03-08 06:15:01,298] [Preprocessor.java:241] [main] Processing chromosome scaffold33742 Processing chromosome scaffold33742 INFO [2014-03-08 06:15:01,331] [Preprocessor.java:241] [main] Processing chromosome scaffold33754 Processing chromosome scaffold33754 INFO [2014-03-08 06:15:01,338] [Preprocessor.java:241] [main] Processing chromosome scaffold338 Processing chromosome scaffold338 INFO [2014-03-08 06:15:01,377] [Preprocessor.java:241] [main] Processing chromosome scaffold33806 Processing chromosome scaffold33806 INFO [2014-03-08 06:15:01,397] [Preprocessor.java:241] [main] Processing chromosome scaffold33820 Processing chromosome scaffold33820 INFO [2014-03-08 06:15:01,399] [Preprocessor.java:241] [main] Processing chromosome scaffold33822 Processing chromosome scaffold33822 INFO [2014-03-08 06:15:01,414] [Preprocessor.java:241] [main] Processing chromosome scaffold33832 Processing chromosome scaffold33832 INFO [2014-03-08 06:15:01,430] [Preprocessor.java:241] [main] Processing chromosome scaffold33840 Processing chromosome scaffold33840 INFO [2014-03-08 06:15:01,447] [Preprocessor.java:241] [main] Processing chromosome scaffold33842 Processing chromosome scaffold33842 INFO [2014-03-08 06:15:01,458] [Preprocessor.java:241] [main] Processing chromosome scaffold33846 Processing chromosome scaffold33846 INFO [2014-03-08 06:15:01,473] [Preprocessor.java:241] [main] Processing chromosome scaffold33848 Processing chromosome scaffold33848 INFO [2014-03-08 06:15:01,482] [Preprocessor.java:241] [main] Processing chromosome scaffold33850 Processing chromosome scaffold33850 INFO [2014-03-08 06:15:01,487] [Preprocessor.java:241] [main] Processing chromosome scaffold33876 Processing chromosome scaffold33876 INFO [2014-03-08 06:15:01,491] [Preprocessor.java:241] [main] Processing chromosome scaffold339 Processing chromosome scaffold339 INFO [2014-03-08 06:15:01,524] [Preprocessor.java:241] [main] Processing chromosome scaffold33902 Processing chromosome scaffold33902 INFO [2014-03-08 06:15:01,542] [Preprocessor.java:241] [main] Processing chromosome scaffold33904 Processing chromosome scaffold33904 INFO [2014-03-08 06:15:01,565] [Preprocessor.java:241] [main] Processing chromosome scaffold33910 Processing chromosome scaffold33910 INFO [2014-03-08 06:15:01,589] [Preprocessor.java:241] [main] Processing chromosome scaffold33912 Processing chromosome scaffold33912 INFO [2014-03-08 06:15:01,594] [Preprocessor.java:241] [main] Processing chromosome scaffold33922 Processing chromosome scaffold33922 INFO [2014-03-08 06:15:01,599] [Preprocessor.java:241] [main] Processing chromosome scaffold33924 Processing chromosome scaffold33924 INFO [2014-03-08 06:15:01,616] [Preprocessor.java:241] [main] Processing chromosome scaffold33934 Processing chromosome scaffold33934 INFO [2014-03-08 06:15:01,625] [Preprocessor.java:241] [main] Processing chromosome scaffold33944 Processing chromosome scaffold33944 INFO [2014-03-08 06:15:01,658] [Preprocessor.java:241] [main] Processing chromosome scaffold33958 Processing chromosome scaffold33958 INFO [2014-03-08 06:15:01,668] [Preprocessor.java:241] [main] Processing chromosome scaffold33960 Processing chromosome scaffold33960 INFO [2014-03-08 06:15:01,696] [Preprocessor.java:241] [main] Processing chromosome scaffold33980 Processing chromosome scaffold33980 INFO [2014-03-08 06:15:01,721] [Preprocessor.java:241] [main] Processing chromosome scaffold33992 Processing chromosome scaffold33992 INFO [2014-03-08 06:15:01,748] [Preprocessor.java:241] [main] Processing chromosome scaffold34 Processing chromosome scaffold34 .INFO [2014-03-08 06:15:01,836] [Preprocessor.java:241] [main] Processing chromosome scaffold340 Processing chromosome scaffold340 INFO [2014-03-08 06:15:01,927] [Preprocessor.java:241] [main] Processing chromosome scaffold34000 Processing chromosome scaffold34000 INFO [2014-03-08 06:15:01,936] [Preprocessor.java:241] [main] Processing chromosome scaffold34008 Processing chromosome scaffold34008 INFO [2014-03-08 06:15:01,944] [Preprocessor.java:241] [main] Processing chromosome scaffold34016 Processing chromosome scaffold34016 INFO [2014-03-08 06:15:01,952] [Preprocessor.java:241] [main] Processing chromosome scaffold34018 Processing chromosome scaffold34018 INFO [2014-03-08 06:15:01,985] [Preprocessor.java:241] [main] Processing chromosome scaffold34020 Processing chromosome scaffold34020 INFO [2014-03-08 06:15:01,988] [Preprocessor.java:241] [main] Processing chromosome scaffold34026 Processing chromosome scaffold34026 INFO [2014-03-08 06:15:02,016] [Preprocessor.java:241] [main] Processing chromosome scaffold34032 Processing chromosome scaffold34032 INFO [2014-03-08 06:15:02,042] [Preprocessor.java:241] [main] Processing chromosome scaffold34048 Processing chromosome scaffold34048 INFO [2014-03-08 06:15:02,062] [Preprocessor.java:241] [main] Processing chromosome scaffold34052 Processing chromosome scaffold34052 INFO [2014-03-08 06:15:02,080] [Preprocessor.java:241] [main] Processing chromosome scaffold34058 Processing chromosome scaffold34058 INFO [2014-03-08 06:15:02,116] [Preprocessor.java:241] [main] Processing chromosome scaffold34064 Processing chromosome scaffold34064 INFO [2014-03-08 06:15:02,125] [Preprocessor.java:241] [main] Processing chromosome scaffold34084 Processing chromosome scaffold34084 INFO [2014-03-08 06:15:02,140] [Preprocessor.java:241] [main] Processing chromosome scaffold34088 Processing chromosome scaffold34088 INFO [2014-03-08 06:15:02,177] [Preprocessor.java:241] [main] Processing chromosome scaffold34098 Processing chromosome scaffold34098 INFO [2014-03-08 06:15:02,203] [Preprocessor.java:241] [main] Processing chromosome scaffold341 Processing chromosome scaffold341 INFO [2014-03-08 06:15:02,258] [Preprocessor.java:241] [main] Processing chromosome scaffold34106 Processing chromosome scaffold34106 INFO [2014-03-08 06:15:02,269] [Preprocessor.java:241] [main] Processing chromosome scaffold34124 Processing chromosome scaffold34124 INFO [2014-03-08 06:15:02,275] [Preprocessor.java:241] [main] Processing chromosome scaffold34144 Processing chromosome scaffold34144 INFO [2014-03-08 06:15:02,283] [Preprocessor.java:241] [main] Processing chromosome scaffold34168 Processing chromosome scaffold34168 INFO [2014-03-08 06:15:02,287] [Preprocessor.java:241] [main] Processing chromosome scaffold34182 Processing chromosome scaffold34182 INFO [2014-03-08 06:15:02,301] [Preprocessor.java:241] [main] Processing chromosome scaffold34192 Processing chromosome scaffold34192 INFO [2014-03-08 06:15:02,312] [Preprocessor.java:241] [main] Processing chromosome scaffold342 Processing chromosome scaffold342 INFO [2014-03-08 06:15:02,328] [Preprocessor.java:241] [main] Processing chromosome scaffold34202 Processing chromosome scaffold34202 INFO [2014-03-08 06:15:02,366] [Preprocessor.java:241] [main] Processing chromosome scaffold34222 Processing chromosome scaffold34222 INFO [2014-03-08 06:15:02,372] [Preprocessor.java:241] [main] Processing chromosome scaffold34224 Processing chromosome scaffold34224 INFO [2014-03-08 06:15:02,379] [Preprocessor.java:241] [main] Processing chromosome scaffold34236 Processing chromosome scaffold34236 INFO [2014-03-08 06:15:02,385] [Preprocessor.java:241] [main] Processing chromosome scaffold34238 Processing chromosome scaffold34238 INFO [2014-03-08 06:15:02,428] [Preprocessor.java:241] [main] Processing chromosome scaffold34244 Processing chromosome scaffold34244 INFO [2014-03-08 06:15:02,464] [Preprocessor.java:241] [main] Processing chromosome scaffold34266 Processing chromosome scaffold34266 INFO [2014-03-08 06:15:02,494] [Preprocessor.java:241] [main] Processing chromosome scaffold34278 Processing chromosome scaffold34278 INFO [2014-03-08 06:15:02,518] [Preprocessor.java:241] [main] Processing chromosome scaffold34282 Processing chromosome scaffold34282 INFO [2014-03-08 06:15:02,534] [Preprocessor.java:241] [main] Processing chromosome scaffold34292 Processing chromosome scaffold34292 INFO [2014-03-08 06:15:02,549] [Preprocessor.java:241] [main] Processing chromosome scaffold34298 Processing chromosome scaffold34298 INFO [2014-03-08 06:15:02,570] [Preprocessor.java:241] [main] Processing chromosome scaffold343 Processing chromosome scaffold343 INFO [2014-03-08 06:15:02,650] [Preprocessor.java:241] [main] Processing chromosome scaffold34302 Processing chromosome scaffold34302 INFO [2014-03-08 06:15:02,659] [Preprocessor.java:241] [main] Processing chromosome scaffold34308 Processing chromosome scaffold34308 INFO [2014-03-08 06:15:02,673] [Preprocessor.java:241] [main] Processing chromosome scaffold34314 Processing chromosome scaffold34314 INFO [2014-03-08 06:15:02,686] [Preprocessor.java:241] [main] Processing chromosome scaffold34348 Processing chromosome scaffold34348 INFO [2014-03-08 06:15:02,697] [Preprocessor.java:241] [main] Processing chromosome scaffold34350 Processing chromosome scaffold34350 INFO [2014-03-08 06:15:02,701] [Preprocessor.java:241] [main] Processing chromosome scaffold34356 Processing chromosome scaffold34356 INFO [2014-03-08 06:15:02,709] [Preprocessor.java:241] [main] Processing chromosome scaffold34364 Processing chromosome scaffold34364 INFO [2014-03-08 06:15:02,738] [Preprocessor.java:241] [main] Processing chromosome scaffold34366 Processing chromosome scaffold34366 INFO [2014-03-08 06:15:02,777] [Preprocessor.java:241] [main] Processing chromosome scaffold34380 Processing chromosome scaffold34380 INFO [2014-03-08 06:15:02,785] [Preprocessor.java:241] [main] Processing chromosome scaffold34388 Processing chromosome scaffold34388 INFO [2014-03-08 06:15:02,788] [Preprocessor.java:241] [main] Processing chromosome scaffold344 Processing chromosome scaffold344 INFO [2014-03-08 06:15:02,805] [Preprocessor.java:241] [main] Processing chromosome scaffold34420 Processing chromosome scaffold34420 INFO [2014-03-08 06:15:02,816] [Preprocessor.java:241] [main] Processing chromosome scaffold34438 Processing chromosome scaffold34438 INFO [2014-03-08 06:15:02,823] [Preprocessor.java:241] [main] Processing chromosome scaffold34442 Processing chromosome scaffold34442 INFO [2014-03-08 06:15:02,828] [Preprocessor.java:241] [main] Processing chromosome scaffold34476 Processing chromosome scaffold34476 INFO [2014-03-08 06:15:02,873] [Preprocessor.java:241] [main] Processing chromosome scaffold34510 Processing chromosome scaffold34510 INFO [2014-03-08 06:15:02,885] [Preprocessor.java:241] [main] Processing chromosome scaffold34528 Processing chromosome scaffold34528 INFO [2014-03-08 06:15:02,888] [Preprocessor.java:241] [main] Processing chromosome scaffold34534 Processing chromosome scaffold34534 INFO [2014-03-08 06:15:02,897] [Preprocessor.java:241] [main] Processing chromosome scaffold34542 Processing chromosome scaffold34542 INFO [2014-03-08 06:15:02,905] [Preprocessor.java:241] [main] Processing chromosome scaffold34544 Processing chromosome scaffold34544 INFO [2014-03-08 06:15:02,939] [Preprocessor.java:241] [main] Processing chromosome scaffold34548 Processing chromosome scaffold34548 INFO [2014-03-08 06:15:02,949] [Preprocessor.java:241] [main] Processing chromosome scaffold34572 Processing chromosome scaffold34572 INFO [2014-03-08 06:15:02,975] [Preprocessor.java:241] [main] Processing chromosome scaffold34574 Processing chromosome scaffold34574 INFO [2014-03-08 06:15:02,978] [Preprocessor.java:241] [main] Processing chromosome scaffold34580 Processing chromosome scaffold34580 INFO [2014-03-08 06:15:02,999] [Preprocessor.java:241] [main] Processing chromosome scaffold34582 Processing chromosome scaffold34582 INFO [2014-03-08 06:15:03,012] [Preprocessor.java:241] [main] Processing chromosome scaffold34594 Processing chromosome scaffold34594 INFO [2014-03-08 06:15:03,044] [Preprocessor.java:241] [main] Processing chromosome scaffold34596 Processing chromosome scaffold34596 INFO [2014-03-08 06:15:03,059] [Preprocessor.java:241] [main] Processing chromosome scaffold34610 Processing chromosome scaffold34610 INFO [2014-03-08 06:15:03,063] [Preprocessor.java:241] [main] Processing chromosome scaffold34652 Processing chromosome scaffold34652 INFO [2014-03-08 06:15:03,088] [Preprocessor.java:241] [main] Processing chromosome scaffold34682 Processing chromosome scaffold34682 INFO [2014-03-08 06:15:03,112] [Preprocessor.java:241] [main] Processing chromosome scaffold34684 Processing chromosome scaffold34684 INFO [2014-03-08 06:15:03,119] [Preprocessor.java:241] [main] Processing chromosome scaffold34694 Processing chromosome scaffold34694 INFO [2014-03-08 06:15:03,134] [Preprocessor.java:241] [main] Processing chromosome scaffold34696 Processing chromosome scaffold34696 INFO [2014-03-08 06:15:03,164] [Preprocessor.java:241] [main] Processing chromosome scaffold347 Processing chromosome scaffold347 INFO [2014-03-08 06:15:03,302] [Preprocessor.java:241] [main] Processing chromosome scaffold34700 Processing chromosome scaffold34700 INFO [2014-03-08 06:15:03,322] [Preprocessor.java:241] [main] Processing chromosome scaffold34710 Processing chromosome scaffold34710 INFO [2014-03-08 06:15:03,347] [Preprocessor.java:241] [main] Processing chromosome scaffold34714 Processing chromosome scaffold34714 INFO [2014-03-08 06:15:03,379] [Preprocessor.java:241] [main] Processing chromosome scaffold34724 Processing chromosome scaffold34724 INFO [2014-03-08 06:15:03,388] [Preprocessor.java:241] [main] Processing chromosome scaffold34732 Processing chromosome scaffold34732 INFO [2014-03-08 06:15:03,427] [Preprocessor.java:241] [main] Processing chromosome scaffold34738 Processing chromosome scaffold34738 INFO [2014-03-08 06:15:03,446] [Preprocessor.java:241] [main] Processing chromosome scaffold34740 Processing chromosome scaffold34740 INFO [2014-03-08 06:15:03,461] [Preprocessor.java:241] [main] Processing chromosome scaffold34742 Processing chromosome scaffold34742 INFO [2014-03-08 06:15:03,485] [Preprocessor.java:241] [main] Processing chromosome scaffold34756 Processing chromosome scaffold34756 INFO [2014-03-08 06:15:03,518] [Preprocessor.java:241] [main] Processing chromosome scaffold34780 Processing chromosome scaffold34780 INFO [2014-03-08 06:15:03,537] [Preprocessor.java:241] [main] Processing chromosome scaffold34794 Processing chromosome scaffold34794 INFO [2014-03-08 06:15:03,566] [Preprocessor.java:241] [main] Processing chromosome scaffold348 Processing chromosome scaffold348 INFO [2014-03-08 06:15:03,714] [Preprocessor.java:241] [main] Processing chromosome scaffold34832 Processing chromosome scaffold34832 INFO [2014-03-08 06:15:03,733] [Preprocessor.java:241] [main] Processing chromosome scaffold34850 Processing chromosome scaffold34850 INFO [2014-03-08 06:15:03,752] [Preprocessor.java:241] [main] Processing chromosome scaffold34860 Processing chromosome scaffold34860 INFO [2014-03-08 06:15:03,790] [Preprocessor.java:241] [main] Processing chromosome scaffold34868 Processing chromosome scaffold34868 INFO [2014-03-08 06:15:03,800] [Preprocessor.java:241] [main] Processing chromosome scaffold34872 Processing chromosome scaffold34872 INFO [2014-03-08 06:15:03,808] [Preprocessor.java:241] [main] Processing chromosome scaffold34882 Processing chromosome scaffold34882 INFO [2014-03-08 06:15:03,810] [Preprocessor.java:241] [main] Processing chromosome scaffold34888 Processing chromosome scaffold34888 INFO [2014-03-08 06:15:03,818] [Preprocessor.java:241] [main] Processing chromosome scaffold34894 Processing chromosome scaffold34894 INFO [2014-03-08 06:15:03,830] [Preprocessor.java:241] [main] Processing chromosome scaffold34898 Processing chromosome scaffold34898 INFO [2014-03-08 06:15:03,852] [Preprocessor.java:241] [main] Processing chromosome scaffold34910 Processing chromosome scaffold34910 INFO [2014-03-08 06:15:03,863] [Preprocessor.java:241] [main] Processing chromosome scaffold34932 Processing chromosome scaffold34932 INFO [2014-03-08 06:15:03,906] [Preprocessor.java:241] [main] Processing chromosome scaffold34942 Processing chromosome scaffold34942 INFO [2014-03-08 06:15:03,920] [Preprocessor.java:241] [main] Processing chromosome scaffold34952 Processing chromosome scaffold34952 INFO [2014-03-08 06:15:03,950] [Preprocessor.java:241] [main] Processing chromosome scaffold34956 Processing chromosome scaffold34956 INFO [2014-03-08 06:15:03,962] [Preprocessor.java:241] [main] Processing chromosome scaffold34958 Processing chromosome scaffold34958 INFO [2014-03-08 06:15:03,997] [Preprocessor.java:241] [main] Processing chromosome scaffold34968 Processing chromosome scaffold34968 INFO [2014-03-08 06:15:04,000] [Preprocessor.java:241] [main] Processing chromosome scaffold34972 Processing chromosome scaffold34972 INFO [2014-03-08 06:15:04,031] [Preprocessor.java:241] [main] Processing chromosome scaffold34974 Processing chromosome scaffold34974 INFO [2014-03-08 06:15:04,049] [Preprocessor.java:241] [main] Processing chromosome scaffold34980 Processing chromosome scaffold34980 INFO [2014-03-08 06:15:04,051] [Preprocessor.java:241] [main] Processing chromosome scaffold34986 Processing chromosome scaffold34986 INFO [2014-03-08 06:15:04,055] [Preprocessor.java:241] [main] Processing chromosome scaffold34994 Processing chromosome scaffold34994 INFO [2014-03-08 06:15:04,064] [Preprocessor.java:241] [main] Processing chromosome scaffold34998 Processing chromosome scaffold34998 INFO [2014-03-08 06:15:04,072] [Preprocessor.java:241] [main] Processing chromosome scaffold35 Processing chromosome scaffold35 INFO [2014-03-08 06:15:04,089] [Preprocessor.java:241] [main] Processing chromosome scaffold350 Processing chromosome scaffold350 INFO [2014-03-08 06:15:04,096] [Preprocessor.java:241] [main] Processing chromosome scaffold35004 Processing chromosome scaffold35004 INFO [2014-03-08 06:15:04,106] [Preprocessor.java:241] [main] Processing chromosome scaffold35014 Processing chromosome scaffold35014 INFO [2014-03-08 06:15:04,138] [Preprocessor.java:241] [main] Processing chromosome scaffold35030 Processing chromosome scaffold35030 INFO [2014-03-08 06:15:04,165] [Preprocessor.java:241] [main] Processing chromosome scaffold35034 Processing chromosome scaffold35034 INFO [2014-03-08 06:15:04,183] [Preprocessor.java:241] [main] Processing chromosome scaffold35036 Processing chromosome scaffold35036 INFO [2014-03-08 06:15:04,211] [Preprocessor.java:241] [main] Processing chromosome scaffold35038 Processing chromosome scaffold35038 INFO [2014-03-08 06:15:04,221] [Preprocessor.java:241] [main] Processing chromosome scaffold35066 Processing chromosome scaffold35066 INFO [2014-03-08 06:15:04,240] [Preprocessor.java:241] [main] Processing chromosome scaffold35070 Processing chromosome scaffold35070 INFO [2014-03-08 06:15:04,249] [Preprocessor.java:241] [main] Processing chromosome scaffold35072 Processing chromosome scaffold35072 INFO [2014-03-08 06:15:04,260] [Preprocessor.java:241] [main] Processing chromosome scaffold35084 Processing chromosome scaffold35084 INFO [2014-03-08 06:15:04,264] [Preprocessor.java:241] [main] Processing chromosome scaffold35094 Processing chromosome scaffold35094 INFO [2014-03-08 06:15:04,269] [Preprocessor.java:241] [main] Processing chromosome scaffold351 Processing chromosome scaffold351 INFO [2014-03-08 06:15:04,425] [Preprocessor.java:241] [main] Processing chromosome scaffold35102 Processing chromosome scaffold35102 INFO [2014-03-08 06:15:04,446] [Preprocessor.java:241] [main] Processing chromosome scaffold35104 Processing chromosome scaffold35104 INFO [2014-03-08 06:15:04,455] [Preprocessor.java:241] [main] Processing chromosome scaffold35108 Processing chromosome scaffold35108 INFO [2014-03-08 06:15:04,485] [Preprocessor.java:241] [main] Processing chromosome scaffold35110 Processing chromosome scaffold35110 INFO [2014-03-08 06:15:04,489] [Preprocessor.java:241] [main] Processing chromosome scaffold35124 Processing chromosome scaffold35124 INFO [2014-03-08 06:15:04,505] [Preprocessor.java:241] [main] Processing chromosome scaffold35136 Processing chromosome scaffold35136 INFO [2014-03-08 06:15:04,553] [Preprocessor.java:241] [main] Processing chromosome scaffold35138 Processing chromosome scaffold35138 INFO [2014-03-08 06:15:04,626] [Preprocessor.java:241] [main] Processing chromosome scaffold35150 Processing chromosome scaffold35150 INFO [2014-03-08 06:15:04,630] [Preprocessor.java:241] [main] Processing chromosome scaffold35152 Processing chromosome scaffold35152 INFO [2014-03-08 06:15:04,641] [Preprocessor.java:241] [main] Processing chromosome scaffold35154 Processing chromosome scaffold35154 INFO [2014-03-08 06:15:04,650] [Preprocessor.java:241] [main] Processing chromosome scaffold35162 Processing chromosome scaffold35162 INFO [2014-03-08 06:15:04,676] [Preprocessor.java:241] [main] Processing chromosome scaffold35180 Processing chromosome scaffold35180 INFO [2014-03-08 06:15:04,694] [Preprocessor.java:241] [main] Processing chromosome scaffold35194 Processing chromosome scaffold35194 INFO [2014-03-08 06:15:04,705] [Preprocessor.java:241] [main] Processing chromosome scaffold35198 Processing chromosome scaffold35198 INFO [2014-03-08 06:15:04,706] [Preprocessor.java:241] [main] Processing chromosome scaffold352 Processing chromosome scaffold352 INFO [2014-03-08 06:15:04,746] [Preprocessor.java:241] [main] Processing chromosome scaffold35200 Processing chromosome scaffold35200 INFO [2014-03-08 06:15:04,756] [Preprocessor.java:241] [main] Processing chromosome scaffold35230 Processing chromosome scaffold35230 INFO [2014-03-08 06:15:04,775] [Preprocessor.java:241] [main] Processing chromosome scaffold35234 Processing chromosome scaffold35234 INFO [2014-03-08 06:15:04,801] [Preprocessor.java:241] [main] Processing chromosome scaffold35236 Processing chromosome scaffold35236 INFO [2014-03-08 06:15:04,837] [Preprocessor.java:241] [main] Processing chromosome scaffold35238 Processing chromosome scaffold35238 INFO [2014-03-08 06:15:04,853] [Preprocessor.java:241] [main] Processing chromosome scaffold35240 Processing chromosome scaffold35240 INFO [2014-03-08 06:15:04,863] [Preprocessor.java:241] [main] Processing chromosome scaffold35250 Processing chromosome scaffold35250 INFO [2014-03-08 06:15:04,880] [Preprocessor.java:241] [main] Processing chromosome scaffold35252 Processing chromosome scaffold35252 INFO [2014-03-08 06:15:04,887] [Preprocessor.java:241] [main] Processing chromosome scaffold35254 Processing chromosome scaffold35254 INFO [2014-03-08 06:15:04,892] [Preprocessor.java:241] [main] Processing chromosome scaffold35266 Processing chromosome scaffold35266 INFO [2014-03-08 06:15:04,907] [Preprocessor.java:241] [main] Processing chromosome scaffold35268 Processing chromosome scaffold35268 INFO [2014-03-08 06:15:04,921] [Preprocessor.java:241] [main] Processing chromosome scaffold35270 Processing chromosome scaffold35270 INFO [2014-03-08 06:15:04,925] [Preprocessor.java:241] [main] Processing chromosome scaffold35272 Processing chromosome scaffold35272 INFO [2014-03-08 06:15:04,952] [Preprocessor.java:241] [main] Processing chromosome scaffold35276 Processing chromosome scaffold35276 INFO [2014-03-08 06:15:04,973] [Preprocessor.java:241] [main] Processing chromosome scaffold35286 Processing chromosome scaffold35286 INFO [2014-03-08 06:15:05,000] [Preprocessor.java:241] [main] Processing chromosome scaffold35296 Processing chromosome scaffold35296 INFO [2014-03-08 06:15:05,027] [Preprocessor.java:241] [main] Processing chromosome scaffold353 Processing chromosome scaffold353 INFO [2014-03-08 06:15:05,039] [Preprocessor.java:241] [main] Processing chromosome scaffold35306 Processing chromosome scaffold35306 INFO [2014-03-08 06:15:05,063] [Preprocessor.java:241] [main] Processing chromosome scaffold35310 Processing chromosome scaffold35310 INFO [2014-03-08 06:15:05,069] [Preprocessor.java:241] [main] Processing chromosome scaffold35330 Processing chromosome scaffold35330 INFO [2014-03-08 06:15:05,085] [Preprocessor.java:241] [main] Processing chromosome scaffold35332 Processing chromosome scaffold35332 INFO [2014-03-08 06:15:05,133] [Preprocessor.java:241] [main] Processing chromosome scaffold35334 Processing chromosome scaffold35334 INFO [2014-03-08 06:15:05,160] [Preprocessor.java:241] [main] Processing chromosome scaffold35336 Processing chromosome scaffold35336 INFO [2014-03-08 06:15:05,185] [Preprocessor.java:241] [main] Processing chromosome scaffold35344 Processing chromosome scaffold35344 INFO [2014-03-08 06:15:05,192] [Preprocessor.java:241] [main] Processing chromosome scaffold35346 Processing chromosome scaffold35346 INFO [2014-03-08 06:15:05,200] [Preprocessor.java:241] [main] Processing chromosome scaffold35348 Processing chromosome scaffold35348 INFO [2014-03-08 06:15:05,207] [Preprocessor.java:241] [main] Processing chromosome scaffold35358 Processing chromosome scaffold35358 INFO [2014-03-08 06:15:05,230] [Preprocessor.java:241] [main] Processing chromosome scaffold35366 Processing chromosome scaffold35366 INFO [2014-03-08 06:15:05,245] [Preprocessor.java:241] [main] Processing chromosome scaffold35380 Processing chromosome scaffold35380 INFO [2014-03-08 06:15:05,258] [Preprocessor.java:241] [main] Processing chromosome scaffold35388 Processing chromosome scaffold35388 INFO [2014-03-08 06:15:05,268] [Preprocessor.java:241] [main] Processing chromosome scaffold35392 Processing chromosome scaffold35392 INFO [2014-03-08 06:15:05,300] [Preprocessor.java:241] [main] Processing chromosome scaffold35396 Processing chromosome scaffold35396 INFO [2014-03-08 06:15:05,327] [Preprocessor.java:241] [main] Processing chromosome scaffold354 Processing chromosome scaffold354 INFO [2014-03-08 06:15:05,489] [Preprocessor.java:241] [main] Processing chromosome scaffold35406 Processing chromosome scaffold35406 INFO [2014-03-08 06:15:05,503] [Preprocessor.java:241] [main] Processing chromosome scaffold35410 Processing chromosome scaffold35410 INFO [2014-03-08 06:15:05,533] [Preprocessor.java:241] [main] Processing chromosome scaffold35416 Processing chromosome scaffold35416 INFO [2014-03-08 06:15:05,536] [Preprocessor.java:241] [main] Processing chromosome scaffold35430 Processing chromosome scaffold35430 INFO [2014-03-08 06:15:05,543] [Preprocessor.java:241] [main] Processing chromosome scaffold35432 Processing chromosome scaffold35432 INFO [2014-03-08 06:15:05,561] [Preprocessor.java:241] [main] Processing chromosome scaffold35436 Processing chromosome scaffold35436 INFO [2014-03-08 06:15:05,582] [Preprocessor.java:241] [main] Processing chromosome scaffold35438 Processing chromosome scaffold35438 INFO [2014-03-08 06:15:05,587] [Preprocessor.java:241] [main] Processing chromosome scaffold35444 Processing chromosome scaffold35444 INFO [2014-03-08 06:15:05,596] [Preprocessor.java:241] [main] Processing chromosome scaffold35446 Processing chromosome scaffold35446 INFO [2014-03-08 06:15:05,614] [Preprocessor.java:241] [main] Processing chromosome scaffold35466 Processing chromosome scaffold35466 INFO [2014-03-08 06:15:05,642] [Preprocessor.java:241] [main] Processing chromosome scaffold35470 Processing chromosome scaffold35470 INFO [2014-03-08 06:15:05,658] [Preprocessor.java:241] [main] Processing chromosome scaffold35472 Processing chromosome scaffold35472 INFO [2014-03-08 06:15:05,701] [Preprocessor.java:241] [main] Processing chromosome scaffold35476 Processing chromosome scaffold35476 INFO [2014-03-08 06:15:05,713] [Preprocessor.java:241] [main] Processing chromosome scaffold35478 Processing chromosome scaffold35478 INFO [2014-03-08 06:15:05,736] [Preprocessor.java:241] [main] Processing chromosome scaffold35480 Processing chromosome scaffold35480 INFO [2014-03-08 06:15:05,753] [Preprocessor.java:241] [main] Processing chromosome scaffold35486 Processing chromosome scaffold35486 INFO [2014-03-08 06:15:05,792] [Preprocessor.java:241] [main] Processing chromosome scaffold35490 Processing chromosome scaffold35490 INFO [2014-03-08 06:15:05,812] [Preprocessor.java:241] [main] Processing chromosome scaffold35508 Processing chromosome scaffold35508 INFO [2014-03-08 06:15:05,822] [Preprocessor.java:241] [main] Processing chromosome scaffold35518 Processing chromosome scaffold35518 INFO [2014-03-08 06:15:05,848] [Preprocessor.java:241] [main] Processing chromosome scaffold35530 Processing chromosome scaffold35530 INFO [2014-03-08 06:15:05,870] [Preprocessor.java:241] [main] Processing chromosome scaffold35536 Processing chromosome scaffold35536 INFO [2014-03-08 06:15:05,903] [Preprocessor.java:241] [main] Processing chromosome scaffold35538 Processing chromosome scaffold35538 INFO [2014-03-08 06:15:05,938] [Preprocessor.java:241] [main] Processing chromosome scaffold35540 Processing chromosome scaffold35540 INFO [2014-03-08 06:15:05,943] [Preprocessor.java:241] [main] Processing chromosome scaffold35558 Processing chromosome scaffold35558 INFO [2014-03-08 06:15:05,959] [Preprocessor.java:241] [main] Processing chromosome scaffold35568 Processing chromosome scaffold35568 INFO [2014-03-08 06:15:05,966] [Preprocessor.java:241] [main] Processing chromosome scaffold35574 Processing chromosome scaffold35574 INFO [2014-03-08 06:15:05,970] [Preprocessor.java:241] [main] Processing chromosome scaffold35586 Processing chromosome scaffold35586 INFO [2014-03-08 06:15:06,004] [Preprocessor.java:241] [main] Processing chromosome scaffold35598 Processing chromosome scaffold35598 INFO [2014-03-08 06:15:06,026] [Preprocessor.java:241] [main] Processing chromosome scaffold35616 Processing chromosome scaffold35616 INFO [2014-03-08 06:15:06,053] [Preprocessor.java:241] [main] Processing chromosome scaffold35636 Processing chromosome scaffold35636 INFO [2014-03-08 06:15:06,063] [Preprocessor.java:241] [main] Processing chromosome scaffold35640 Processing chromosome scaffold35640 INFO [2014-03-08 06:15:06,089] [Preprocessor.java:241] [main] Processing chromosome scaffold35654 Processing chromosome scaffold35654 INFO [2014-03-08 06:15:06,098] [Preprocessor.java:241] [main] Processing chromosome scaffold35660 Processing chromosome scaffold35660 INFO [2014-03-08 06:15:06,101] [Preprocessor.java:241] [main] Processing chromosome scaffold35680 Processing chromosome scaffold35680 INFO [2014-03-08 06:15:06,139] [Preprocessor.java:241] [main] Processing chromosome scaffold35684 Processing chromosome scaffold35684 INFO [2014-03-08 06:15:06,154] [Preprocessor.java:241] [main] Processing chromosome scaffold35694 Processing chromosome scaffold35694 INFO [2014-03-08 06:15:06,161] [Preprocessor.java:241] [main] Processing chromosome scaffold357 Processing chromosome scaffold357 INFO [2014-03-08 06:15:06,242] [Preprocessor.java:241] [main] Processing chromosome scaffold35712 Processing chromosome scaffold35712 INFO [2014-03-08 06:15:06,280] [Preprocessor.java:241] [main] Processing chromosome scaffold35724 Processing chromosome scaffold35724 INFO [2014-03-08 06:15:06,305] [Preprocessor.java:241] [main] Processing chromosome scaffold35726 Processing chromosome scaffold35726 INFO [2014-03-08 06:15:06,323] [Preprocessor.java:241] [main] Processing chromosome scaffold35732 Processing chromosome scaffold35732 INFO [2014-03-08 06:15:06,332] [Preprocessor.java:241] [main] Processing chromosome scaffold35754 Processing chromosome scaffold35754 INFO [2014-03-08 06:15:06,347] [Preprocessor.java:241] [main] Processing chromosome scaffold35772 Processing chromosome scaffold35772 INFO [2014-03-08 06:15:06,355] [Preprocessor.java:241] [main] Processing chromosome scaffold35784 Processing chromosome scaffold35784 INFO [2014-03-08 06:15:06,373] [Preprocessor.java:241] [main] Processing chromosome scaffold35792 Processing chromosome scaffold35792 INFO [2014-03-08 06:15:06,382] [Preprocessor.java:241] [main] Processing chromosome scaffold35796 Processing chromosome scaffold35796 INFO [2014-03-08 06:15:06,387] [Preprocessor.java:241] [main] Processing chromosome scaffold358 Processing chromosome scaffold358 INFO [2014-03-08 06:15:06,455] [Preprocessor.java:241] [main] Processing chromosome scaffold35806 Processing chromosome scaffold35806 INFO [2014-03-08 06:15:06,461] [Preprocessor.java:241] [main] Processing chromosome scaffold35808 Processing chromosome scaffold35808 INFO [2014-03-08 06:15:06,470] [Preprocessor.java:241] [main] Processing chromosome scaffold35814 Processing chromosome scaffold35814 INFO [2014-03-08 06:15:06,484] [Preprocessor.java:241] [main] Processing chromosome scaffold35822 Processing chromosome scaffold35822 INFO [2014-03-08 06:15:06,526] [Preprocessor.java:241] [main] Processing chromosome scaffold35836 Processing chromosome scaffold35836 INFO [2014-03-08 06:15:06,561] [Preprocessor.java:241] [main] Processing chromosome scaffold35854 Processing chromosome scaffold35854 INFO [2014-03-08 06:15:06,588] [Preprocessor.java:241] [main] Processing chromosome scaffold35860 Processing chromosome scaffold35860 INFO [2014-03-08 06:15:06,598] [Preprocessor.java:241] [main] Processing chromosome scaffold35866 Processing chromosome scaffold35866 INFO [2014-03-08 06:15:06,622] [Preprocessor.java:241] [main] Processing chromosome scaffold35870 Processing chromosome scaffold35870 INFO [2014-03-08 06:15:06,644] [Preprocessor.java:241] [main] Processing chromosome scaffold35874 Processing chromosome scaffold35874 INFO [2014-03-08 06:15:06,650] [Preprocessor.java:241] [main] Processing chromosome scaffold35884 Processing chromosome scaffold35884 INFO [2014-03-08 06:15:06,685] [Preprocessor.java:241] [main] Processing chromosome scaffold35890 Processing chromosome scaffold35890 INFO [2014-03-08 06:15:06,718] [Preprocessor.java:241] [main] Processing chromosome scaffold35894 Processing chromosome scaffold35894 INFO [2014-03-08 06:15:06,727] [Preprocessor.java:241] [main] Processing chromosome scaffold35896 Processing chromosome scaffold35896 INFO [2014-03-08 06:15:06,737] [Preprocessor.java:241] [main] Processing chromosome scaffold35898 Processing chromosome scaffold35898 INFO [2014-03-08 06:15:06,744] [Preprocessor.java:241] [main] Processing chromosome scaffold35900 Processing chromosome scaffold35900 INFO [2014-03-08 06:15:06,757] [Preprocessor.java:241] [main] Processing chromosome scaffold35902 Processing chromosome scaffold35902 INFO [2014-03-08 06:15:06,762] [Preprocessor.java:241] [main] Processing chromosome scaffold35910 Processing chromosome scaffold35910 INFO [2014-03-08 06:15:06,773] [Preprocessor.java:241] [main] Processing chromosome scaffold35912 Processing chromosome scaffold35912 INFO [2014-03-08 06:15:06,813] [Preprocessor.java:241] [main] Processing chromosome scaffold35926 Processing chromosome scaffold35926 INFO [2014-03-08 06:15:06,831] [Preprocessor.java:241] [main] Processing chromosome scaffold35928 Processing chromosome scaffold35928 INFO [2014-03-08 06:15:06,845] [Preprocessor.java:241] [main] Processing chromosome scaffold35936 Processing chromosome scaffold35936 INFO [2014-03-08 06:15:06,867] [Preprocessor.java:241] [main] Processing chromosome scaffold35946 Processing chromosome scaffold35946 INFO [2014-03-08 06:15:06,892] [Preprocessor.java:241] [main] Processing chromosome scaffold35950 Processing chromosome scaffold35950 INFO [2014-03-08 06:15:06,895] [Preprocessor.java:241] [main] Processing chromosome scaffold35956 Processing chromosome scaffold35956 INFO [2014-03-08 06:15:06,898] [Preprocessor.java:241] [main] Processing chromosome scaffold35958 Processing chromosome scaffold35958 INFO [2014-03-08 06:15:06,901] [Preprocessor.java:241] [main] Processing chromosome scaffold35960 Processing chromosome scaffold35960 INFO [2014-03-08 06:15:06,924] [Preprocessor.java:241] [main] Processing chromosome scaffold35966 Processing chromosome scaffold35966 INFO [2014-03-08 06:15:06,933] [Preprocessor.java:241] [main] Processing chromosome scaffold35970 Processing chromosome scaffold35970 INFO [2014-03-08 06:15:06,959] [Preprocessor.java:241] [main] Processing chromosome scaffold35974 Processing chromosome scaffold35974 INFO [2014-03-08 06:15:06,971] [Preprocessor.java:241] [main] Processing chromosome scaffold35982 Processing chromosome scaffold35982 INFO [2014-03-08 06:15:07,007] [Preprocessor.java:241] [main] Processing chromosome scaffold35986 Processing chromosome scaffold35986 INFO [2014-03-08 06:15:07,017] [Preprocessor.java:241] [main] Processing chromosome scaffold35988 Processing chromosome scaffold35988 INFO [2014-03-08 06:15:07,033] [Preprocessor.java:241] [main] Processing chromosome scaffold35994 Processing chromosome scaffold35994 INFO [2014-03-08 06:15:07,074] [Preprocessor.java:241] [main] Processing chromosome scaffold36 Processing chromosome scaffold36 INFO [2014-03-08 06:15:07,115] [Preprocessor.java:241] [main] Processing chromosome scaffold36002 Processing chromosome scaffold36002 INFO [2014-03-08 06:15:07,124] [Preprocessor.java:241] [main] Processing chromosome scaffold36004 Processing chromosome scaffold36004 INFO [2014-03-08 06:15:07,129] [Preprocessor.java:241] [main] Processing chromosome scaffold36006 Processing chromosome scaffold36006 INFO [2014-03-08 06:15:07,157] [Preprocessor.java:241] [main] Processing chromosome scaffold36016 Processing chromosome scaffold36016 INFO [2014-03-08 06:15:07,165] [Preprocessor.java:241] [main] Processing chromosome scaffold36020 Processing chromosome scaffold36020 INFO [2014-03-08 06:15:07,171] [Preprocessor.java:241] [main] Processing chromosome scaffold36022 Processing chromosome scaffold36022 INFO [2014-03-08 06:15:07,198] [Preprocessor.java:241] [main] Processing chromosome scaffold36026 Processing chromosome scaffold36026 INFO [2014-03-08 06:15:07,205] [Preprocessor.java:241] [main] Processing chromosome scaffold36034 Processing chromosome scaffold36034 INFO [2014-03-08 06:15:07,232] [Preprocessor.java:241] [main] Processing chromosome scaffold36036 Processing chromosome scaffold36036 INFO [2014-03-08 06:15:07,243] [Preprocessor.java:241] [main] Processing chromosome scaffold36070 Processing chromosome scaffold36070 INFO [2014-03-08 06:15:07,254] [Preprocessor.java:241] [main] Processing chromosome scaffold36088 Processing chromosome scaffold36088 INFO [2014-03-08 06:15:07,264] [Preprocessor.java:241] [main] Processing chromosome scaffold36092 Processing chromosome scaffold36092 INFO [2014-03-08 06:15:07,285] [Preprocessor.java:241] [main] Processing chromosome scaffold36094 Processing chromosome scaffold36094 INFO [2014-03-08 06:15:07,328] [Preprocessor.java:241] [main] Processing chromosome scaffold361 Processing chromosome scaffold361 INFO [2014-03-08 06:15:07,466] [Preprocessor.java:241] [main] Processing chromosome scaffold36102 Processing chromosome scaffold36102 INFO [2014-03-08 06:15:07,476] [Preprocessor.java:241] [main] Processing chromosome scaffold36104 Processing chromosome scaffold36104 INFO [2014-03-08 06:15:07,513] [Preprocessor.java:241] [main] Processing chromosome scaffold36108 Processing chromosome scaffold36108 INFO [2014-03-08 06:15:07,562] [Preprocessor.java:241] [main] Processing chromosome scaffold36114 Processing chromosome scaffold36114 INFO [2014-03-08 06:15:07,575] [Preprocessor.java:241] [main] Processing chromosome scaffold36118 Processing chromosome scaffold36118 INFO [2014-03-08 06:15:07,589] [Preprocessor.java:241] [main] Processing chromosome scaffold36122 Processing chromosome scaffold36122 INFO [2014-03-08 06:15:07,628] [Preprocessor.java:241] [main] Processing chromosome scaffold36140 Processing chromosome scaffold36140 INFO [2014-03-08 06:15:07,645] [Preprocessor.java:241] [main] Processing chromosome scaffold36156 Processing chromosome scaffold36156 INFO [2014-03-08 06:15:07,654] [Preprocessor.java:241] [main] Processing chromosome scaffold36158 Processing chromosome scaffold36158 INFO [2014-03-08 06:15:07,715] [Preprocessor.java:241] [main] Processing chromosome scaffold36170 Processing chromosome scaffold36170 INFO [2014-03-08 06:15:07,730] [Preprocessor.java:241] [main] Processing chromosome scaffold36174 Processing chromosome scaffold36174 INFO [2014-03-08 06:15:07,760] [Preprocessor.java:241] [main] Processing chromosome scaffold36190 Processing chromosome scaffold36190 INFO [2014-03-08 06:15:07,784] [Preprocessor.java:241] [main] Processing chromosome scaffold36196 Processing chromosome scaffold36196 INFO [2014-03-08 06:15:07,807] [Preprocessor.java:241] [main] Processing chromosome scaffold36198 Processing chromosome scaffold36198 INFO [2014-03-08 06:15:07,833] [Preprocessor.java:241] [main] Processing chromosome scaffold36202 Processing chromosome scaffold36202 INFO [2014-03-08 06:15:07,840] [Preprocessor.java:241] [main] Processing chromosome scaffold36208 Processing chromosome scaffold36208 INFO [2014-03-08 06:15:07,862] [Preprocessor.java:241] [main] Processing chromosome scaffold36210 Processing chromosome scaffold36210 INFO [2014-03-08 06:15:07,892] [Preprocessor.java:241] [main] Processing chromosome scaffold36218 Processing chromosome scaffold36218 INFO [2014-03-08 06:15:07,905] [Preprocessor.java:241] [main] Processing chromosome scaffold36240 Processing chromosome scaffold36240 INFO [2014-03-08 06:15:07,908] [Preprocessor.java:241] [main] Processing chromosome scaffold36278 Processing chromosome scaffold36278 INFO [2014-03-08 06:15:07,941] [Preprocessor.java:241] [main] Processing chromosome scaffold36286 Processing chromosome scaffold36286 INFO [2014-03-08 06:15:07,965] [Preprocessor.java:241] [main] Processing chromosome scaffold36298 Processing chromosome scaffold36298 INFO [2014-03-08 06:15:07,975] [Preprocessor.java:241] [main] Processing chromosome scaffold363 Processing chromosome scaffold363 INFO [2014-03-08 06:15:08,066] [Preprocessor.java:241] [main] Processing chromosome scaffold36314 Processing chromosome scaffold36314 INFO [2014-03-08 06:15:08,110] [Preprocessor.java:241] [main] Processing chromosome scaffold36318 Processing chromosome scaffold36318 INFO [2014-03-08 06:15:08,153] [Preprocessor.java:241] [main] Processing chromosome scaffold36324 Processing chromosome scaffold36324 INFO [2014-03-08 06:15:08,169] [Preprocessor.java:241] [main] Processing chromosome scaffold36334 Processing chromosome scaffold36334 INFO [2014-03-08 06:15:08,174] [Preprocessor.java:241] [main] Processing chromosome scaffold36336 Processing chromosome scaffold36336 INFO [2014-03-08 06:15:08,209] [Preprocessor.java:241] [main] Processing chromosome scaffold36342 Processing chromosome scaffold36342 INFO [2014-03-08 06:15:08,228] [Preprocessor.java:241] [main] Processing chromosome scaffold36348 Processing chromosome scaffold36348 INFO [2014-03-08 06:15:08,231] [Preprocessor.java:241] [main] Processing chromosome scaffold36356 Processing chromosome scaffold36356 INFO [2014-03-08 06:15:08,241] [Preprocessor.java:241] [main] Processing chromosome scaffold36362 Processing chromosome scaffold36362 INFO [2014-03-08 06:15:08,262] [Preprocessor.java:241] [main] Processing chromosome scaffold36378 Processing chromosome scaffold36378 INFO [2014-03-08 06:15:08,291] [Preprocessor.java:241] [main] Processing chromosome scaffold36384 Processing chromosome scaffold36384 INFO [2014-03-08 06:15:08,317] [Preprocessor.java:241] [main] Processing chromosome scaffold36390 Processing chromosome scaffold36390 INFO [2014-03-08 06:15:08,343] [Preprocessor.java:241] [main] Processing chromosome scaffold36398 Processing chromosome scaffold36398 INFO [2014-03-08 06:15:08,395] [Preprocessor.java:241] [main] Processing chromosome scaffold364 Processing chromosome scaffold364 INFO [2014-03-08 06:15:08,532] [Preprocessor.java:241] [main] Processing chromosome scaffold36406 Processing chromosome scaffold36406 INFO [2014-03-08 06:15:08,557] [Preprocessor.java:241] [main] Processing chromosome scaffold36410 Processing chromosome scaffold36410 INFO [2014-03-08 06:15:08,578] [Preprocessor.java:241] [main] Processing chromosome scaffold36420 Processing chromosome scaffold36420 INFO [2014-03-08 06:15:08,591] [Preprocessor.java:241] [main] Processing chromosome scaffold36426 Processing chromosome scaffold36426 INFO [2014-03-08 06:15:08,606] [Preprocessor.java:241] [main] Processing chromosome scaffold36432 Processing chromosome scaffold36432 INFO [2014-03-08 06:15:08,625] [Preprocessor.java:241] [main] Processing chromosome scaffold36450 Processing chromosome scaffold36450 INFO [2014-03-08 06:15:08,645] [Preprocessor.java:241] [main] Processing chromosome scaffold36452 Processing chromosome scaffold36452 INFO [2014-03-08 06:15:08,670] [Preprocessor.java:241] [main] Processing chromosome scaffold36456 Processing chromosome scaffold36456 INFO [2014-03-08 06:15:08,682] [Preprocessor.java:241] [main] Processing chromosome scaffold36462 Processing chromosome scaffold36462 INFO [2014-03-08 06:15:08,719] [Preprocessor.java:241] [main] Processing chromosome scaffold36470 Processing chromosome scaffold36470 INFO [2014-03-08 06:15:08,739] [Preprocessor.java:241] [main] Processing chromosome scaffold36474 Processing chromosome scaffold36474 INFO [2014-03-08 06:15:08,785] [Preprocessor.java:241] [main] Processing chromosome scaffold36476 Processing chromosome scaffold36476 INFO [2014-03-08 06:15:08,801] [Preprocessor.java:241] [main] Processing chromosome scaffold36482 Processing chromosome scaffold36482 INFO [2014-03-08 06:15:08,809] [Preprocessor.java:241] [main] Processing chromosome scaffold36490 Processing chromosome scaffold36490 INFO [2014-03-08 06:15:08,842] [Preprocessor.java:241] [main] Processing chromosome scaffold36492 Processing chromosome scaffold36492 INFO [2014-03-08 06:15:08,853] [Preprocessor.java:241] [main] Processing chromosome scaffold36494 Processing chromosome scaffold36494 INFO [2014-03-08 06:15:08,881] [Preprocessor.java:241] [main] Processing chromosome scaffold365 Processing chromosome scaffold365 INFO [2014-03-08 06:15:09,032] [Preprocessor.java:241] [main] Processing chromosome scaffold36506 Processing chromosome scaffold36506 INFO [2014-03-08 06:15:09,048] [Preprocessor.java:241] [main] Processing chromosome scaffold36510 Processing chromosome scaffold36510 INFO [2014-03-08 06:15:09,051] [Preprocessor.java:241] [main] Processing chromosome scaffold36516 Processing chromosome scaffold36516 INFO [2014-03-08 06:15:09,059] [Preprocessor.java:241] [main] Processing chromosome scaffold36526 Processing chromosome scaffold36526 INFO [2014-03-08 06:15:09,075] [Preprocessor.java:241] [main] Processing chromosome scaffold36534 Processing chromosome scaffold36534 INFO [2014-03-08 06:15:09,078] [Preprocessor.java:241] [main] Processing chromosome scaffold36536 Processing chromosome scaffold36536 INFO [2014-03-08 06:15:09,091] [Preprocessor.java:241] [main] Processing chromosome scaffold36542 Processing chromosome scaffold36542 INFO [2014-03-08 06:15:09,120] [Preprocessor.java:241] [main] Processing chromosome scaffold36548 Processing chromosome scaffold36548 INFO [2014-03-08 06:15:09,146] [Preprocessor.java:241] [main] Processing chromosome scaffold36572 Processing chromosome scaffold36572 INFO [2014-03-08 06:15:09,183] [Preprocessor.java:241] [main] Processing chromosome scaffold36590 Processing chromosome scaffold36590 INFO [2014-03-08 06:15:09,195] [Preprocessor.java:241] [main] Processing chromosome scaffold36592 Processing chromosome scaffold36592 INFO [2014-03-08 06:15:09,205] [Preprocessor.java:241] [main] Processing chromosome scaffold36594 Processing chromosome scaffold36594 INFO [2014-03-08 06:15:09,212] [Preprocessor.java:241] [main] Processing chromosome scaffold36598 Processing chromosome scaffold36598 INFO [2014-03-08 06:15:09,225] [Preprocessor.java:241] [main] Processing chromosome scaffold366 Processing chromosome scaffold366 INFO [2014-03-08 06:15:09,308] [Preprocessor.java:241] [main] Processing chromosome scaffold36624 Processing chromosome scaffold36624 INFO [2014-03-08 06:15:09,317] [Preprocessor.java:241] [main] Processing chromosome scaffold36630 Processing chromosome scaffold36630 INFO [2014-03-08 06:15:09,324] [Preprocessor.java:241] [main] Processing chromosome scaffold36638 Processing chromosome scaffold36638 INFO [2014-03-08 06:15:09,352] [Preprocessor.java:241] [main] Processing chromosome scaffold36640 Processing chromosome scaffold36640 INFO [2014-03-08 06:15:09,373] [Preprocessor.java:241] [main] Processing chromosome scaffold36642 Processing chromosome scaffold36642 INFO [2014-03-08 06:15:09,399] [Preprocessor.java:241] [main] Processing chromosome scaffold36650 Processing chromosome scaffold36650 INFO [2014-03-08 06:15:09,408] [Preprocessor.java:241] [main] Processing chromosome scaffold36654 Processing chromosome scaffold36654 INFO [2014-03-08 06:15:09,452] [Preprocessor.java:241] [main] Processing chromosome scaffold36660 Processing chromosome scaffold36660 INFO [2014-03-08 06:15:09,461] [Preprocessor.java:241] [main] Processing chromosome scaffold36664 Processing chromosome scaffold36664 INFO [2014-03-08 06:15:09,479] [Preprocessor.java:241] [main] Processing chromosome scaffold36672 Processing chromosome scaffold36672 INFO [2014-03-08 06:15:09,496] [Preprocessor.java:241] [main] Processing chromosome scaffold36674 Processing chromosome scaffold36674 INFO [2014-03-08 06:15:09,526] [Preprocessor.java:241] [main] Processing chromosome scaffold36678 Processing chromosome scaffold36678 INFO [2014-03-08 06:15:09,544] [Preprocessor.java:241] [main] Processing chromosome scaffold36684 Processing chromosome scaffold36684 INFO [2014-03-08 06:15:09,549] [Preprocessor.java:241] [main] Processing chromosome scaffold36698 Processing chromosome scaffold36698 INFO [2014-03-08 06:15:09,595] [Preprocessor.java:241] [main] Processing chromosome scaffold36716 Processing chromosome scaffold36716 INFO [2014-03-08 06:15:09,628] [Preprocessor.java:241] [main] Processing chromosome scaffold36728 Processing chromosome scaffold36728 INFO [2014-03-08 06:15:09,666] [Preprocessor.java:241] [main] Processing chromosome scaffold36730 Processing chromosome scaffold36730 INFO [2014-03-08 06:15:09,685] [Preprocessor.java:241] [main] Processing chromosome scaffold36732 Processing chromosome scaffold36732 INFO [2014-03-08 06:15:09,713] [Preprocessor.java:241] [main] Processing chromosome scaffold36736 Processing chromosome scaffold36736 INFO [2014-03-08 06:15:09,741] [Preprocessor.java:241] [main] Processing chromosome scaffold36748 Processing chromosome scaffold36748 INFO [2014-03-08 06:15:09,751] [Preprocessor.java:241] [main] Processing chromosome scaffold36758 Processing chromosome scaffold36758 INFO [2014-03-08 06:15:09,793] [Preprocessor.java:241] [main] Processing chromosome scaffold36760 Processing chromosome scaffold36760 INFO [2014-03-08 06:15:09,803] [Preprocessor.java:241] [main] Processing chromosome scaffold36768 Processing chromosome scaffold36768 INFO [2014-03-08 06:15:09,811] [Preprocessor.java:241] [main] Processing chromosome scaffold36774 Processing chromosome scaffold36774 .INFO [2014-03-08 06:15:09,834] [Preprocessor.java:241] [main] Processing chromosome scaffold36778 Processing chromosome scaffold36778 INFO [2014-03-08 06:15:09,843] [Preprocessor.java:241] [main] Processing chromosome scaffold36790 Processing chromosome scaffold36790 INFO [2014-03-08 06:15:09,855] [Preprocessor.java:241] [main] Processing chromosome scaffold36794 Processing chromosome scaffold36794 INFO [2014-03-08 06:15:09,869] [Preprocessor.java:241] [main] Processing chromosome scaffold368 Processing chromosome scaffold368 INFO [2014-03-08 06:15:09,953] [Preprocessor.java:241] [main] Processing chromosome scaffold36802 Processing chromosome scaffold36802 INFO [2014-03-08 06:15:09,966] [Preprocessor.java:241] [main] Processing chromosome scaffold36806 Processing chromosome scaffold36806 INFO [2014-03-08 06:15:09,983] [Preprocessor.java:241] [main] Processing chromosome scaffold36808 Processing chromosome scaffold36808 INFO [2014-03-08 06:15:09,995] [Preprocessor.java:241] [main] Processing chromosome scaffold36812 Processing chromosome scaffold36812 INFO [2014-03-08 06:15:10,017] [Preprocessor.java:241] [main] Processing chromosome scaffold36816 Processing chromosome scaffold36816 INFO [2014-03-08 06:15:10,047] [Preprocessor.java:241] [main] Processing chromosome scaffold36820 Processing chromosome scaffold36820 INFO [2014-03-08 06:15:10,064] [Preprocessor.java:241] [main] Processing chromosome scaffold36848 Processing chromosome scaffold36848 INFO [2014-03-08 06:15:10,080] [Preprocessor.java:241] [main] Processing chromosome scaffold36850 Processing chromosome scaffold36850 INFO [2014-03-08 06:15:10,093] [Preprocessor.java:241] [main] Processing chromosome scaffold36854 Processing chromosome scaffold36854 INFO [2014-03-08 06:15:10,105] [Preprocessor.java:241] [main] Processing chromosome scaffold36858 Processing chromosome scaffold36858 INFO [2014-03-08 06:15:10,113] [Preprocessor.java:241] [main] Processing chromosome scaffold36862 Processing chromosome scaffold36862 INFO [2014-03-08 06:15:10,141] [Preprocessor.java:241] [main] Processing chromosome scaffold36866 Processing chromosome scaffold36866 INFO [2014-03-08 06:15:10,168] [Preprocessor.java:241] [main] Processing chromosome scaffold36872 Processing chromosome scaffold36872 INFO [2014-03-08 06:15:10,180] [Preprocessor.java:241] [main] Processing chromosome scaffold36886 Processing chromosome scaffold36886 INFO [2014-03-08 06:15:10,202] [Preprocessor.java:241] [main] Processing chromosome scaffold36898 Processing chromosome scaffold36898 INFO [2014-03-08 06:15:10,221] [Preprocessor.java:241] [main] Processing chromosome scaffold369 Processing chromosome scaffold369 INFO [2014-03-08 06:15:10,301] [Preprocessor.java:241] [main] Processing chromosome scaffold36900 Processing chromosome scaffold36900 INFO [2014-03-08 06:15:10,336] [Preprocessor.java:241] [main] Processing chromosome scaffold36904 Processing chromosome scaffold36904 INFO [2014-03-08 06:15:10,376] [Preprocessor.java:241] [main] Processing chromosome scaffold36906 Processing chromosome scaffold36906 INFO [2014-03-08 06:15:10,393] [Preprocessor.java:241] [main] Processing chromosome scaffold36916 Processing chromosome scaffold36916 INFO [2014-03-08 06:15:10,426] [Preprocessor.java:241] [main] Processing chromosome scaffold36926 Processing chromosome scaffold36926 INFO [2014-03-08 06:15:10,446] [Preprocessor.java:241] [main] Processing chromosome scaffold36928 Processing chromosome scaffold36928 INFO [2014-03-08 06:15:10,475] [Preprocessor.java:241] [main] Processing chromosome scaffold36936 Processing chromosome scaffold36936 INFO [2014-03-08 06:15:10,500] [Preprocessor.java:241] [main] Processing chromosome scaffold36940 Processing chromosome scaffold36940 INFO [2014-03-08 06:15:10,507] [Preprocessor.java:241] [main] Processing chromosome scaffold36970 Processing chromosome scaffold36970 INFO [2014-03-08 06:15:10,516] [Preprocessor.java:241] [main] Processing chromosome scaffold36980 Processing chromosome scaffold36980 INFO [2014-03-08 06:15:10,540] [Preprocessor.java:241] [main] Processing chromosome scaffold36994 Processing chromosome scaffold36994 INFO [2014-03-08 06:15:10,580] [Preprocessor.java:241] [main] Processing chromosome scaffold36998 Processing chromosome scaffold36998 INFO [2014-03-08 06:15:10,588] [Preprocessor.java:241] [main] Processing chromosome scaffold37 Processing chromosome scaffold37 INFO [2014-03-08 06:15:10,609] [Preprocessor.java:241] [main] Processing chromosome scaffold370 Processing chromosome scaffold370 INFO [2014-03-08 06:15:10,771] [Preprocessor.java:241] [main] Processing chromosome scaffold37002 Processing chromosome scaffold37002 INFO [2014-03-08 06:15:10,800] [Preprocessor.java:241] [main] Processing chromosome scaffold37006 Processing chromosome scaffold37006 INFO [2014-03-08 06:15:10,817] [Preprocessor.java:241] [main] Processing chromosome scaffold37010 Processing chromosome scaffold37010 INFO [2014-03-08 06:15:10,854] [Preprocessor.java:241] [main] Processing chromosome scaffold37014 Processing chromosome scaffold37014 INFO [2014-03-08 06:15:10,909] [Preprocessor.java:241] [main] Processing chromosome scaffold37028 Processing chromosome scaffold37028 INFO [2014-03-08 06:15:10,927] [Preprocessor.java:241] [main] Processing chromosome scaffold37032 Processing chromosome scaffold37032 INFO [2014-03-08 06:15:10,934] [Preprocessor.java:241] [main] Processing chromosome scaffold37042 Processing chromosome scaffold37042 INFO [2014-03-08 06:15:10,950] [Preprocessor.java:241] [main] Processing chromosome scaffold37046 Processing chromosome scaffold37046 INFO [2014-03-08 06:15:10,970] [Preprocessor.java:241] [main] Processing chromosome scaffold37050 Processing chromosome scaffold37050 INFO [2014-03-08 06:15:10,977] [Preprocessor.java:241] [main] Processing chromosome scaffold37054 Processing chromosome scaffold37054 INFO [2014-03-08 06:15:10,986] [Preprocessor.java:241] [main] Processing chromosome scaffold37062 Processing chromosome scaffold37062 INFO [2014-03-08 06:15:11,019] [Preprocessor.java:241] [main] Processing chromosome scaffold37064 Processing chromosome scaffold37064 INFO [2014-03-08 06:15:11,035] [Preprocessor.java:241] [main] Processing chromosome scaffold37068 Processing chromosome scaffold37068 INFO [2014-03-08 06:15:11,125] [Preprocessor.java:241] [main] Processing chromosome scaffold37080 Processing chromosome scaffold37080 INFO [2014-03-08 06:15:11,137] [Preprocessor.java:241] [main] Processing chromosome scaffold37082 Processing chromosome scaffold37082 INFO [2014-03-08 06:15:11,147] [Preprocessor.java:241] [main] Processing chromosome scaffold37092 Processing chromosome scaffold37092 INFO [2014-03-08 06:15:11,159] [Preprocessor.java:241] [main] Processing chromosome scaffold37096 Processing chromosome scaffold37096 INFO [2014-03-08 06:15:11,182] [Preprocessor.java:241] [main] Processing chromosome scaffold37098 Processing chromosome scaffold37098 INFO [2014-03-08 06:15:11,193] [Preprocessor.java:241] [main] Processing chromosome scaffold371 Processing chromosome scaffold371 INFO [2014-03-08 06:15:11,206] [Preprocessor.java:241] [main] Processing chromosome scaffold37124 Processing chromosome scaffold37124 INFO [2014-03-08 06:15:11,212] [Preprocessor.java:241] [main] Processing chromosome scaffold37128 Processing chromosome scaffold37128 INFO [2014-03-08 06:15:11,246] [Preprocessor.java:241] [main] Processing chromosome scaffold37134 Processing chromosome scaffold37134 INFO [2014-03-08 06:15:11,266] [Preprocessor.java:241] [main] Processing chromosome scaffold37148 Processing chromosome scaffold37148 INFO [2014-03-08 06:15:11,287] [Preprocessor.java:241] [main] Processing chromosome scaffold37154 Processing chromosome scaffold37154 INFO [2014-03-08 06:15:11,295] [Preprocessor.java:241] [main] Processing chromosome scaffold37176 Processing chromosome scaffold37176 INFO [2014-03-08 06:15:11,302] [Preprocessor.java:241] [main] Processing chromosome scaffold37178 Processing chromosome scaffold37178 INFO [2014-03-08 06:15:11,312] [Preprocessor.java:241] [main] Processing chromosome scaffold37186 Processing chromosome scaffold37186 INFO [2014-03-08 06:15:11,324] [Preprocessor.java:241] [main] Processing chromosome scaffold372 Processing chromosome scaffold372 INFO [2014-03-08 06:15:11,426] [Preprocessor.java:241] [main] Processing chromosome scaffold37200 Processing chromosome scaffold37200 INFO [2014-03-08 06:15:11,432] [Preprocessor.java:241] [main] Processing chromosome scaffold37206 Processing chromosome scaffold37206 INFO [2014-03-08 06:15:11,437] [Preprocessor.java:241] [main] Processing chromosome scaffold37214 Processing chromosome scaffold37214 INFO [2014-03-08 06:15:11,459] [Preprocessor.java:241] [main] Processing chromosome scaffold37248 Processing chromosome scaffold37248 INFO [2014-03-08 06:15:11,484] [Preprocessor.java:241] [main] Processing chromosome scaffold37252 Processing chromosome scaffold37252 INFO [2014-03-08 06:15:11,497] [Preprocessor.java:241] [main] Processing chromosome scaffold37278 Processing chromosome scaffold37278 INFO [2014-03-08 06:15:11,515] [Preprocessor.java:241] [main] Processing chromosome scaffold37286 Processing chromosome scaffold37286 INFO [2014-03-08 06:15:11,527] [Preprocessor.java:241] [main] Processing chromosome scaffold37290 Processing chromosome scaffold37290 INFO [2014-03-08 06:15:11,532] [Preprocessor.java:241] [main] Processing chromosome scaffold37292 Processing chromosome scaffold37292 INFO [2014-03-08 06:15:11,557] [Preprocessor.java:241] [main] Processing chromosome scaffold37308 Processing chromosome scaffold37308 INFO [2014-03-08 06:15:11,568] [Preprocessor.java:241] [main] Processing chromosome scaffold37344 Processing chromosome scaffold37344 INFO [2014-03-08 06:15:11,608] [Preprocessor.java:241] [main] Processing chromosome scaffold37358 Processing chromosome scaffold37358 INFO [2014-03-08 06:15:11,630] [Preprocessor.java:241] [main] Processing chromosome scaffold37378 Processing chromosome scaffold37378 INFO [2014-03-08 06:15:11,655] [Preprocessor.java:241] [main] Processing chromosome scaffold37386 Processing chromosome scaffold37386 INFO [2014-03-08 06:15:11,685] [Preprocessor.java:241] [main] Processing chromosome scaffold37396 Processing chromosome scaffold37396 INFO [2014-03-08 06:15:11,710] [Preprocessor.java:241] [main] Processing chromosome scaffold374 Processing chromosome scaffold374 INFO [2014-03-08 06:15:11,742] [Preprocessor.java:241] [main] Processing chromosome scaffold37400 Processing chromosome scaffold37400 INFO [2014-03-08 06:15:11,757] [Preprocessor.java:241] [main] Processing chromosome scaffold37408 Processing chromosome scaffold37408 INFO [2014-03-08 06:15:11,764] [Preprocessor.java:241] [main] Processing chromosome scaffold37418 Processing chromosome scaffold37418 INFO [2014-03-08 06:15:11,781] [Preprocessor.java:241] [main] Processing chromosome scaffold37422 Processing chromosome scaffold37422 INFO [2014-03-08 06:15:11,789] [Preprocessor.java:241] [main] Processing chromosome scaffold37424 Processing chromosome scaffold37424 INFO [2014-03-08 06:15:11,820] [Preprocessor.java:241] [main] Processing chromosome scaffold37426 Processing chromosome scaffold37426 INFO [2014-03-08 06:15:11,830] [Preprocessor.java:241] [main] Processing chromosome scaffold37428 Processing chromosome scaffold37428 INFO [2014-03-08 06:15:11,842] [Preprocessor.java:241] [main] Processing chromosome scaffold37430 Processing chromosome scaffold37430 INFO [2014-03-08 06:15:11,848] [Preprocessor.java:241] [main] Processing chromosome scaffold37432 Processing chromosome scaffold37432 INFO [2014-03-08 06:15:11,852] [Preprocessor.java:241] [main] Processing chromosome scaffold37436 Processing chromosome scaffold37436 INFO [2014-03-08 06:15:11,880] [Preprocessor.java:241] [main] Processing chromosome scaffold37438 Processing chromosome scaffold37438 INFO [2014-03-08 06:15:11,889] [Preprocessor.java:241] [main] Processing chromosome scaffold37460 Processing chromosome scaffold37460 INFO [2014-03-08 06:15:11,945] [Preprocessor.java:241] [main] Processing chromosome scaffold37468 Processing chromosome scaffold37468 INFO [2014-03-08 06:15:11,958] [Preprocessor.java:241] [main] Processing chromosome scaffold37472 Processing chromosome scaffold37472 INFO [2014-03-08 06:15:11,961] [Preprocessor.java:241] [main] Processing chromosome scaffold37488 Processing chromosome scaffold37488 INFO [2014-03-08 06:15:11,981] [Preprocessor.java:241] [main] Processing chromosome scaffold37496 Processing chromosome scaffold37496 INFO [2014-03-08 06:15:11,994] [Preprocessor.java:241] [main] Processing chromosome scaffold37498 Processing chromosome scaffold37498 INFO [2014-03-08 06:15:12,003] [Preprocessor.java:241] [main] Processing chromosome scaffold37500 Processing chromosome scaffold37500 INFO [2014-03-08 06:15:12,025] [Preprocessor.java:241] [main] Processing chromosome scaffold37508 Processing chromosome scaffold37508 INFO [2014-03-08 06:15:12,049] [Preprocessor.java:241] [main] Processing chromosome scaffold37512 Processing chromosome scaffold37512 INFO [2014-03-08 06:15:12,091] [Preprocessor.java:241] [main] Processing chromosome scaffold37516 Processing chromosome scaffold37516 INFO [2014-03-08 06:15:12,108] [Preprocessor.java:241] [main] Processing chromosome scaffold37520 Processing chromosome scaffold37520 INFO [2014-03-08 06:15:12,114] [Preprocessor.java:241] [main] Processing chromosome scaffold37532 Processing chromosome scaffold37532 INFO [2014-03-08 06:15:12,133] [Preprocessor.java:241] [main] Processing chromosome scaffold37540 Processing chromosome scaffold37540 INFO [2014-03-08 06:15:12,173] [Preprocessor.java:241] [main] Processing chromosome scaffold37548 Processing chromosome scaffold37548 INFO [2014-03-08 06:15:12,191] [Preprocessor.java:241] [main] Processing chromosome scaffold37554 Processing chromosome scaffold37554 INFO [2014-03-08 06:15:12,210] [Preprocessor.java:241] [main] Processing chromosome scaffold37558 Processing chromosome scaffold37558 INFO [2014-03-08 06:15:12,219] [Preprocessor.java:241] [main] Processing chromosome scaffold37576 Processing chromosome scaffold37576 INFO [2014-03-08 06:15:12,253] [Preprocessor.java:241] [main] Processing chromosome scaffold37584 Processing chromosome scaffold37584 INFO [2014-03-08 06:15:12,259] [Preprocessor.java:241] [main] Processing chromosome scaffold376 Processing chromosome scaffold376 INFO [2014-03-08 06:15:12,406] [Preprocessor.java:241] [main] Processing chromosome scaffold37622 Processing chromosome scaffold37622 INFO [2014-03-08 06:15:12,427] [Preprocessor.java:241] [main] Processing chromosome scaffold37662 Processing chromosome scaffold37662 INFO [2014-03-08 06:15:12,439] [Preprocessor.java:241] [main] Processing chromosome scaffold37664 Processing chromosome scaffold37664 INFO [2014-03-08 06:15:12,477] [Preprocessor.java:241] [main] Processing chromosome scaffold37668 Processing chromosome scaffold37668 INFO [2014-03-08 06:15:12,493] [Preprocessor.java:241] [main] Processing chromosome scaffold37672 Processing chromosome scaffold37672 INFO [2014-03-08 06:15:12,529] [Preprocessor.java:241] [main] Processing chromosome scaffold37678 Processing chromosome scaffold37678 INFO [2014-03-08 06:15:12,568] [Preprocessor.java:241] [main] Processing chromosome scaffold37680 Processing chromosome scaffold37680 INFO [2014-03-08 06:15:12,617] [Preprocessor.java:241] [main] Processing chromosome scaffold37690 Processing chromosome scaffold37690 INFO [2014-03-08 06:15:12,658] [Preprocessor.java:241] [main] Processing chromosome scaffold37698 Processing chromosome scaffold37698 INFO [2014-03-08 06:15:12,662] [Preprocessor.java:241] [main] Processing chromosome scaffold377 Processing chromosome scaffold377 INFO [2014-03-08 06:15:12,765] [Preprocessor.java:241] [main] Processing chromosome scaffold37712 Processing chromosome scaffold37712 INFO [2014-03-08 06:15:12,796] [Preprocessor.java:241] [main] Processing chromosome scaffold37718 Processing chromosome scaffold37718 INFO [2014-03-08 06:15:12,802] [Preprocessor.java:241] [main] Processing chromosome scaffold37720 Processing chromosome scaffold37720 INFO [2014-03-08 06:15:12,815] [Preprocessor.java:241] [main] Processing chromosome scaffold37722 Processing chromosome scaffold37722 INFO [2014-03-08 06:15:12,820] [Preprocessor.java:241] [main] Processing chromosome scaffold37724 Processing chromosome scaffold37724 INFO [2014-03-08 06:15:12,847] [Preprocessor.java:241] [main] Processing chromosome scaffold37730 Processing chromosome scaffold37730 INFO [2014-03-08 06:15:12,860] [Preprocessor.java:241] [main] Processing chromosome scaffold37732 Processing chromosome scaffold37732 INFO [2014-03-08 06:15:12,886] [Preprocessor.java:241] [main] Processing chromosome scaffold37738 Processing chromosome scaffold37738 INFO [2014-03-08 06:15:12,913] [Preprocessor.java:241] [main] Processing chromosome scaffold37740 Processing chromosome scaffold37740 INFO [2014-03-08 06:15:12,942] [Preprocessor.java:241] [main] Processing chromosome scaffold37746 Processing chromosome scaffold37746 INFO [2014-03-08 06:15:12,957] [Preprocessor.java:241] [main] Processing chromosome scaffold37748 Processing chromosome scaffold37748 INFO [2014-03-08 06:15:12,974] [Preprocessor.java:241] [main] Processing chromosome scaffold37756 Processing chromosome scaffold37756 INFO [2014-03-08 06:15:12,980] [Preprocessor.java:241] [main] Processing chromosome scaffold37758 Processing chromosome scaffold37758 INFO [2014-03-08 06:15:12,986] [Preprocessor.java:241] [main] Processing chromosome scaffold37760 Processing chromosome scaffold37760 INFO [2014-03-08 06:15:13,012] [Preprocessor.java:241] [main] Processing chromosome scaffold37772 Processing chromosome scaffold37772 INFO [2014-03-08 06:15:13,039] [Preprocessor.java:241] [main] Processing chromosome scaffold37788 Processing chromosome scaffold37788 INFO [2014-03-08 06:15:13,046] [Preprocessor.java:241] [main] Processing chromosome scaffold37790 Processing chromosome scaffold37790 INFO [2014-03-08 06:15:13,054] [Preprocessor.java:241] [main] Processing chromosome scaffold37794 Processing chromosome scaffold37794 INFO [2014-03-08 06:15:13,075] [Preprocessor.java:241] [main] Processing chromosome scaffold378 Processing chromosome scaffold378 INFO [2014-03-08 06:15:13,238] [Preprocessor.java:241] [main] Processing chromosome scaffold37808 Processing chromosome scaffold37808 INFO [2014-03-08 06:15:13,245] [Preprocessor.java:241] [main] Processing chromosome scaffold37816 Processing chromosome scaffold37816 INFO [2014-03-08 06:15:13,251] [Preprocessor.java:241] [main] Processing chromosome scaffold37834 Processing chromosome scaffold37834 INFO [2014-03-08 06:15:13,263] [Preprocessor.java:241] [main] Processing chromosome scaffold37838 Processing chromosome scaffold37838 INFO [2014-03-08 06:15:13,278] [Preprocessor.java:241] [main] Processing chromosome scaffold37844 Processing chromosome scaffold37844 INFO [2014-03-08 06:15:13,310] [Preprocessor.java:241] [main] Processing chromosome scaffold37850 Processing chromosome scaffold37850 INFO [2014-03-08 06:15:13,324] [Preprocessor.java:241] [main] Processing chromosome scaffold37856 Processing chromosome scaffold37856 INFO [2014-03-08 06:15:13,336] [Preprocessor.java:241] [main] Processing chromosome scaffold37858 Processing chromosome scaffold37858 INFO [2014-03-08 06:15:13,359] [Preprocessor.java:241] [main] Processing chromosome scaffold37874 Processing chromosome scaffold37874 INFO [2014-03-08 06:15:13,376] [Preprocessor.java:241] [main] Processing chromosome scaffold37876 Processing chromosome scaffold37876 INFO [2014-03-08 06:15:13,391] [Preprocessor.java:241] [main] Processing chromosome scaffold37880 Processing chromosome scaffold37880 INFO [2014-03-08 06:15:13,426] [Preprocessor.java:241] [main] Processing chromosome scaffold37884 Processing chromosome scaffold37884 INFO [2014-03-08 06:15:13,467] [Preprocessor.java:241] [main] Processing chromosome scaffold37892 Processing chromosome scaffold37892 INFO [2014-03-08 06:15:13,484] [Preprocessor.java:241] [main] Processing chromosome scaffold379 Processing chromosome scaffold379 INFO [2014-03-08 06:15:13,489] [Preprocessor.java:241] [main] Processing chromosome scaffold37900 Processing chromosome scaffold37900 INFO [2014-03-08 06:15:13,510] [Preprocessor.java:241] [main] Processing chromosome scaffold37902 Processing chromosome scaffold37902 INFO [2014-03-08 06:15:13,523] [Preprocessor.java:241] [main] Processing chromosome scaffold37906 Processing chromosome scaffold37906 INFO [2014-03-08 06:15:13,535] [Preprocessor.java:241] [main] Processing chromosome scaffold37938 Processing chromosome scaffold37938 INFO [2014-03-08 06:15:13,555] [Preprocessor.java:241] [main] Processing chromosome scaffold37944 Processing chromosome scaffold37944 INFO [2014-03-08 06:15:13,573] [Preprocessor.java:241] [main] Processing chromosome scaffold37946 Processing chromosome scaffold37946 INFO [2014-03-08 06:15:13,588] [Preprocessor.java:241] [main] Processing chromosome scaffold37966 Processing chromosome scaffold37966 INFO [2014-03-08 06:15:13,603] [Preprocessor.java:241] [main] Processing chromosome scaffold37968 Processing chromosome scaffold37968 INFO [2014-03-08 06:15:13,610] [Preprocessor.java:241] [main] Processing chromosome scaffold37972 Processing chromosome scaffold37972 INFO [2014-03-08 06:15:13,644] [Preprocessor.java:241] [main] Processing chromosome scaffold37990 Processing chromosome scaffold37990 INFO [2014-03-08 06:15:13,651] [Preprocessor.java:241] [main] Processing chromosome scaffold37992 Processing chromosome scaffold37992 INFO [2014-03-08 06:15:13,678] [Preprocessor.java:241] [main] Processing chromosome scaffold38002 Processing chromosome scaffold38002 INFO [2014-03-08 06:15:13,707] [Preprocessor.java:241] [main] Processing chromosome scaffold38006 Processing chromosome scaffold38006 INFO [2014-03-08 06:15:13,727] [Preprocessor.java:241] [main] Processing chromosome scaffold38010 Processing chromosome scaffold38010 INFO [2014-03-08 06:15:13,779] [Preprocessor.java:241] [main] Processing chromosome scaffold38020 Processing chromosome scaffold38020 INFO [2014-03-08 06:15:13,789] [Preprocessor.java:241] [main] Processing chromosome scaffold38024 Processing chromosome scaffold38024 INFO [2014-03-08 06:15:13,807] [Preprocessor.java:241] [main] Processing chromosome scaffold38026 Processing chromosome scaffold38026 INFO [2014-03-08 06:15:13,838] [Preprocessor.java:241] [main] Processing chromosome scaffold38030 Processing chromosome scaffold38030 INFO [2014-03-08 06:15:13,896] [Preprocessor.java:241] [main] Processing chromosome scaffold38034 Processing chromosome scaffold38034 INFO [2014-03-08 06:15:13,908] [Preprocessor.java:241] [main] Processing chromosome scaffold38048 Processing chromosome scaffold38048 INFO [2014-03-08 06:15:13,932] [Preprocessor.java:241] [main] Processing chromosome scaffold38054 Processing chromosome scaffold38054 INFO [2014-03-08 06:15:13,941] [Preprocessor.java:241] [main] Processing chromosome scaffold38056 Processing chromosome scaffold38056 INFO [2014-03-08 06:15:13,950] [Preprocessor.java:241] [main] Processing chromosome scaffold38058 Processing chromosome scaffold38058 INFO [2014-03-08 06:15:13,969] [Preprocessor.java:241] [main] Processing chromosome scaffold38062 Processing chromosome scaffold38062 INFO [2014-03-08 06:15:13,993] [Preprocessor.java:241] [main] Processing chromosome scaffold38066 Processing chromosome scaffold38066 INFO [2014-03-08 06:15:14,001] [Preprocessor.java:241] [main] Processing chromosome scaffold38072 Processing chromosome scaffold38072 INFO [2014-03-08 06:15:14,021] [Preprocessor.java:241] [main] Processing chromosome scaffold38078 Processing chromosome scaffold38078 INFO [2014-03-08 06:15:14,029] [Preprocessor.java:241] [main] Processing chromosome scaffold38090 Processing chromosome scaffold38090 INFO [2014-03-08 06:15:14,046] [Preprocessor.java:241] [main] Processing chromosome scaffold381 Processing chromosome scaffold381 INFO [2014-03-08 06:15:14,124] [Preprocessor.java:241] [main] Processing chromosome scaffold38108 Processing chromosome scaffold38108 INFO [2014-03-08 06:15:14,150] [Preprocessor.java:241] [main] Processing chromosome scaffold38116 Processing chromosome scaffold38116 INFO [2014-03-08 06:15:14,162] [Preprocessor.java:241] [main] Processing chromosome scaffold38122 Processing chromosome scaffold38122 INFO [2014-03-08 06:15:14,167] [Preprocessor.java:241] [main] Processing chromosome scaffold38130 Processing chromosome scaffold38130 INFO [2014-03-08 06:15:14,182] [Preprocessor.java:241] [main] Processing chromosome scaffold38136 Processing chromosome scaffold38136 INFO [2014-03-08 06:15:14,192] [Preprocessor.java:241] [main] Processing chromosome scaffold38148 Processing chromosome scaffold38148 INFO [2014-03-08 06:15:14,222] [Preprocessor.java:241] [main] Processing chromosome scaffold38152 Processing chromosome scaffold38152 INFO [2014-03-08 06:15:14,239] [Preprocessor.java:241] [main] Processing chromosome scaffold38162 Processing chromosome scaffold38162 INFO [2014-03-08 06:15:14,255] [Preprocessor.java:241] [main] Processing chromosome scaffold38166 Processing chromosome scaffold38166 INFO [2014-03-08 06:15:14,275] [Preprocessor.java:241] [main] Processing chromosome scaffold38174 Processing chromosome scaffold38174 INFO [2014-03-08 06:15:14,325] [Preprocessor.java:241] [main] Processing chromosome scaffold38184 Processing chromosome scaffold38184 INFO [2014-03-08 06:15:14,375] [Preprocessor.java:241] [main] Processing chromosome scaffold38186 Processing chromosome scaffold38186 INFO [2014-03-08 06:15:14,391] [Preprocessor.java:241] [main] Processing chromosome scaffold38190 Processing chromosome scaffold38190 INFO [2014-03-08 06:15:14,453] [Preprocessor.java:241] [main] Processing chromosome scaffold38194 Processing chromosome scaffold38194 INFO [2014-03-08 06:15:14,491] [Preprocessor.java:241] [main] Processing chromosome scaffold38196 Processing chromosome scaffold38196 INFO [2014-03-08 06:15:14,527] [Preprocessor.java:241] [main] Processing chromosome scaffold382 Processing chromosome scaffold382 INFO [2014-03-08 06:15:14,554] [Preprocessor.java:241] [main] Processing chromosome scaffold38210 Processing chromosome scaffold38210 INFO [2014-03-08 06:15:14,572] [Preprocessor.java:241] [main] Processing chromosome scaffold38216 Processing chromosome scaffold38216 INFO [2014-03-08 06:15:14,578] [Preprocessor.java:241] [main] Processing chromosome scaffold38220 Processing chromosome scaffold38220 INFO [2014-03-08 06:15:14,582] [Preprocessor.java:241] [main] Processing chromosome scaffold38222 Processing chromosome scaffold38222 INFO [2014-03-08 06:15:14,612] [Preprocessor.java:241] [main] Processing chromosome scaffold38256 Processing chromosome scaffold38256 INFO [2014-03-08 06:15:14,626] [Preprocessor.java:241] [main] Processing chromosome scaffold38264 Processing chromosome scaffold38264 INFO [2014-03-08 06:15:14,692] [Preprocessor.java:241] [main] Processing chromosome scaffold38270 Processing chromosome scaffold38270 INFO [2014-03-08 06:15:14,712] [Preprocessor.java:241] [main] Processing chromosome scaffold38272 Processing chromosome scaffold38272 INFO [2014-03-08 06:15:14,734] [Preprocessor.java:241] [main] Processing chromosome scaffold38274 Processing chromosome scaffold38274 INFO [2014-03-08 06:15:14,767] [Preprocessor.java:241] [main] Processing chromosome scaffold38276 Processing chromosome scaffold38276 INFO [2014-03-08 06:15:14,838] [Preprocessor.java:241] [main] Processing chromosome scaffold38284 Processing chromosome scaffold38284 INFO [2014-03-08 06:15:14,856] [Preprocessor.java:241] [main] Processing chromosome scaffold38290 Processing chromosome scaffold38290 INFO [2014-03-08 06:15:14,874] [Preprocessor.java:241] [main] Processing chromosome scaffold38292 Processing chromosome scaffold38292 INFO [2014-03-08 06:15:14,904] [Preprocessor.java:241] [main] Processing chromosome scaffold38298 Processing chromosome scaffold38298 INFO [2014-03-08 06:15:14,930] [Preprocessor.java:241] [main] Processing chromosome scaffold383 Processing chromosome scaffold383 INFO [2014-03-08 06:15:15,122] [Preprocessor.java:241] [main] Processing chromosome scaffold38302 Processing chromosome scaffold38302 INFO [2014-03-08 06:15:15,136] [Preprocessor.java:241] [main] Processing chromosome scaffold38306 Processing chromosome scaffold38306 INFO [2014-03-08 06:15:15,159] [Preprocessor.java:241] [main] Processing chromosome scaffold38310 Processing chromosome scaffold38310 INFO [2014-03-08 06:15:15,164] [Preprocessor.java:241] [main] Processing chromosome scaffold38348 Processing chromosome scaffold38348 INFO [2014-03-08 06:15:15,183] [Preprocessor.java:241] [main] Processing chromosome scaffold38354 Processing chromosome scaffold38354 INFO [2014-03-08 06:15:15,217] [Preprocessor.java:241] [main] Processing chromosome scaffold38360 Processing chromosome scaffold38360 INFO [2014-03-08 06:15:15,227] [Preprocessor.java:241] [main] Processing chromosome scaffold38364 Processing chromosome scaffold38364 INFO [2014-03-08 06:15:15,252] [Preprocessor.java:241] [main] Processing chromosome scaffold38366 Processing chromosome scaffold38366 INFO [2014-03-08 06:15:15,286] [Preprocessor.java:241] [main] Processing chromosome scaffold38370 Processing chromosome scaffold38370 INFO [2014-03-08 06:15:15,309] [Preprocessor.java:241] [main] Processing chromosome scaffold38372 Processing chromosome scaffold38372 INFO [2014-03-08 06:15:15,356] [Preprocessor.java:241] [main] Processing chromosome scaffold38374 Processing chromosome scaffold38374 INFO [2014-03-08 06:15:15,373] [Preprocessor.java:241] [main] Processing chromosome scaffold38376 Processing chromosome scaffold38376 INFO [2014-03-08 06:15:15,389] [Preprocessor.java:241] [main] Processing chromosome scaffold38378 Processing chromosome scaffold38378 INFO [2014-03-08 06:15:15,392] [Preprocessor.java:241] [main] Processing chromosome scaffold38382 Processing chromosome scaffold38382 INFO [2014-03-08 06:15:15,448] [Preprocessor.java:241] [main] Processing chromosome scaffold384 Processing chromosome scaffold384 INFO [2014-03-08 06:15:15,463] [Preprocessor.java:241] [main] Processing chromosome scaffold38400 Processing chromosome scaffold38400 INFO [2014-03-08 06:15:15,479] [Preprocessor.java:241] [main] Processing chromosome scaffold38422 Processing chromosome scaffold38422 INFO [2014-03-08 06:15:15,488] [Preprocessor.java:241] [main] Processing chromosome scaffold38438 Processing chromosome scaffold38438 INFO [2014-03-08 06:15:15,509] [Preprocessor.java:241] [main] Processing chromosome scaffold38444 Processing chromosome scaffold38444 INFO [2014-03-08 06:15:15,533] [Preprocessor.java:241] [main] Processing chromosome scaffold38448 Processing chromosome scaffold38448 INFO [2014-03-08 06:15:15,560] [Preprocessor.java:241] [main] Processing chromosome scaffold38458 Processing chromosome scaffold38458 INFO [2014-03-08 06:15:15,586] [Preprocessor.java:241] [main] Processing chromosome scaffold38464 Processing chromosome scaffold38464 INFO [2014-03-08 06:15:15,628] [Preprocessor.java:241] [main] Processing chromosome scaffold38466 Processing chromosome scaffold38466 INFO [2014-03-08 06:15:15,663] [Preprocessor.java:241] [main] Processing chromosome scaffold38468 Processing chromosome scaffold38468 INFO [2014-03-08 06:15:15,697] [Preprocessor.java:241] [main] Processing chromosome scaffold38480 Processing chromosome scaffold38480 INFO [2014-03-08 06:15:15,709] [Preprocessor.java:241] [main] Processing chromosome scaffold38492 Processing chromosome scaffold38492 INFO [2014-03-08 06:15:15,752] [Preprocessor.java:241] [main] Processing chromosome scaffold38494 Processing chromosome scaffold38494 INFO [2014-03-08 06:15:15,797] [Preprocessor.java:241] [main] Processing chromosome scaffold38498 Processing chromosome scaffold38498 INFO [2014-03-08 06:15:15,820] [Preprocessor.java:241] [main] Processing chromosome scaffold385 Processing chromosome scaffold385 INFO [2014-03-08 06:15:15,864] [Preprocessor.java:241] [main] Processing chromosome scaffold38508 Processing chromosome scaffold38508 INFO [2014-03-08 06:15:15,892] [Preprocessor.java:241] [main] Processing chromosome scaffold38510 Processing chromosome scaffold38510 INFO [2014-03-08 06:15:15,944] [Preprocessor.java:241] [main] Processing chromosome scaffold38514 Processing chromosome scaffold38514 INFO [2014-03-08 06:15:15,961] [Preprocessor.java:241] [main] Processing chromosome scaffold38524 Processing chromosome scaffold38524 INFO [2014-03-08 06:15:15,992] [Preprocessor.java:241] [main] Processing chromosome scaffold38532 Processing chromosome scaffold38532 INFO [2014-03-08 06:15:16,020] [Preprocessor.java:241] [main] Processing chromosome scaffold38546 Processing chromosome scaffold38546 INFO [2014-03-08 06:15:16,040] [Preprocessor.java:241] [main] Processing chromosome scaffold38552 Processing chromosome scaffold38552 INFO [2014-03-08 06:15:16,062] [Preprocessor.java:241] [main] Processing chromosome scaffold38558 Processing chromosome scaffold38558 INFO [2014-03-08 06:15:16,083] [Preprocessor.java:241] [main] Processing chromosome scaffold38568 Processing chromosome scaffold38568 INFO [2014-03-08 06:15:16,130] [Preprocessor.java:241] [main] Processing chromosome scaffold38576 Processing chromosome scaffold38576 INFO [2014-03-08 06:15:16,159] [Preprocessor.java:241] [main] Processing chromosome scaffold38580 Processing chromosome scaffold38580 INFO [2014-03-08 06:15:16,169] [Preprocessor.java:241] [main] Processing chromosome scaffold38596 Processing chromosome scaffold38596 INFO [2014-03-08 06:15:16,191] [Preprocessor.java:241] [main] Processing chromosome scaffold386 Processing chromosome scaffold386 INFO [2014-03-08 06:15:16,295] [Preprocessor.java:241] [main] Processing chromosome scaffold38608 Processing chromosome scaffold38608 INFO [2014-03-08 06:15:16,316] [Preprocessor.java:241] [main] Processing chromosome scaffold38612 Processing chromosome scaffold38612 INFO [2014-03-08 06:15:16,365] [Preprocessor.java:241] [main] Processing chromosome scaffold38626 Processing chromosome scaffold38626 INFO [2014-03-08 06:15:16,406] [Preprocessor.java:241] [main] Processing chromosome scaffold38638 Processing chromosome scaffold38638 INFO [2014-03-08 06:15:16,424] [Preprocessor.java:241] [main] Processing chromosome scaffold38650 Processing chromosome scaffold38650 INFO [2014-03-08 06:15:16,446] [Preprocessor.java:241] [main] Processing chromosome scaffold38654 Processing chromosome scaffold38654 INFO [2014-03-08 06:15:16,458] [Preprocessor.java:241] [main] Processing chromosome scaffold38672 Processing chromosome scaffold38672 INFO [2014-03-08 06:15:16,485] [Preprocessor.java:241] [main] Processing chromosome scaffold38674 Processing chromosome scaffold38674 INFO [2014-03-08 06:15:16,517] [Preprocessor.java:241] [main] Processing chromosome scaffold38678 Processing chromosome scaffold38678 INFO [2014-03-08 06:15:16,537] [Preprocessor.java:241] [main] Processing chromosome scaffold38686 Processing chromosome scaffold38686 INFO [2014-03-08 06:15:16,590] [Preprocessor.java:241] [main] Processing chromosome scaffold38688 Processing chromosome scaffold38688 20.0% INFO [2014-03-08 06:15:16,654] [Preprocessor.java:241] [main] Processing chromosome scaffold387 Processing chromosome scaffold387 INFO [2014-03-08 06:15:16,688] [Preprocessor.java:241] [main] Processing chromosome scaffold38700 Processing chromosome scaffold38700 INFO [2014-03-08 06:15:16,706] [Preprocessor.java:241] [main] Processing chromosome scaffold38704 Processing chromosome scaffold38704 INFO [2014-03-08 06:15:16,724] [Preprocessor.java:241] [main] Processing chromosome scaffold38714 Processing chromosome scaffold38714 INFO [2014-03-08 06:15:16,738] [Preprocessor.java:241] [main] Processing chromosome scaffold38736 Processing chromosome scaffold38736 INFO [2014-03-08 06:15:16,757] [Preprocessor.java:241] [main] Processing chromosome scaffold38750 Processing chromosome scaffold38750 INFO [2014-03-08 06:15:16,780] [Preprocessor.java:241] [main] Processing chromosome scaffold38752 Processing chromosome scaffold38752 INFO [2014-03-08 06:15:16,838] [Preprocessor.java:241] [main] Processing chromosome scaffold38756 Processing chromosome scaffold38756 INFO [2014-03-08 06:15:16,865] [Preprocessor.java:241] [main] Processing chromosome scaffold38764 Processing chromosome scaffold38764 INFO [2014-03-08 06:15:16,873] [Preprocessor.java:241] [main] Processing chromosome scaffold38774 Processing chromosome scaffold38774 INFO [2014-03-08 06:15:16,886] [Preprocessor.java:241] [main] Processing chromosome scaffold38780 Processing chromosome scaffold38780 INFO [2014-03-08 06:15:16,910] [Preprocessor.java:241] [main] Processing chromosome scaffold38784 Processing chromosome scaffold38784 INFO [2014-03-08 06:15:16,941] [Preprocessor.java:241] [main] Processing chromosome scaffold388 Processing chromosome scaffold388 INFO [2014-03-08 06:15:17,128] [Preprocessor.java:241] [main] Processing chromosome scaffold38804 Processing chromosome scaffold38804 INFO [2014-03-08 06:15:17,159] [Preprocessor.java:241] [main] Processing chromosome scaffold38816 Processing chromosome scaffold38816 INFO [2014-03-08 06:15:17,205] [Preprocessor.java:241] [main] Processing chromosome scaffold38818 Processing chromosome scaffold38818 INFO [2014-03-08 06:15:17,236] [Preprocessor.java:241] [main] Processing chromosome scaffold38822 Processing chromosome scaffold38822 INFO [2014-03-08 06:15:17,263] [Preprocessor.java:241] [main] Processing chromosome scaffold38824 Processing chromosome scaffold38824 INFO [2014-03-08 06:15:17,300] [Preprocessor.java:241] [main] Processing chromosome scaffold38828 Processing chromosome scaffold38828 INFO [2014-03-08 06:15:17,346] [Preprocessor.java:241] [main] Processing chromosome scaffold38848 Processing chromosome scaffold38848 INFO [2014-03-08 06:15:17,354] [Preprocessor.java:241] [main] Processing chromosome scaffold38854 Processing chromosome scaffold38854 INFO [2014-03-08 06:15:17,359] [Preprocessor.java:241] [main] Processing chromosome scaffold38856 Processing chromosome scaffold38856 INFO [2014-03-08 06:15:17,377] [Preprocessor.java:241] [main] Processing chromosome scaffold38864 Processing chromosome scaffold38864 INFO [2014-03-08 06:15:17,405] [Preprocessor.java:241] [main] Processing chromosome scaffold38876 Processing chromosome scaffold38876 INFO [2014-03-08 06:15:17,411] [Preprocessor.java:241] [main] Processing chromosome scaffold38882 Processing chromosome scaffold38882 INFO [2014-03-08 06:15:17,438] [Preprocessor.java:241] [main] Processing chromosome scaffold38884 Processing chromosome scaffold38884 INFO [2014-03-08 06:15:17,455] [Preprocessor.java:241] [main] Processing chromosome scaffold38898 Processing chromosome scaffold38898 INFO [2014-03-08 06:15:17,463] [Preprocessor.java:241] [main] Processing chromosome scaffold389 Processing chromosome scaffold389 INFO [2014-03-08 06:15:17,496] [Preprocessor.java:241] [main] Processing chromosome scaffold38900 Processing chromosome scaffold38900 INFO [2014-03-08 06:15:17,520] [Preprocessor.java:241] [main] Processing chromosome scaffold38902 Processing chromosome scaffold38902 INFO [2014-03-08 06:15:17,554] [Preprocessor.java:241] [main] Processing chromosome scaffold38904 Processing chromosome scaffold38904 INFO [2014-03-08 06:15:17,578] [Preprocessor.java:241] [main] Processing chromosome scaffold38908 Processing chromosome scaffold38908 INFO [2014-03-08 06:15:17,584] [Preprocessor.java:241] [main] Processing chromosome scaffold38912 Processing chromosome scaffold38912 INFO [2014-03-08 06:15:17,619] [Preprocessor.java:241] [main] Processing chromosome scaffold38916 Processing chromosome scaffold38916 INFO [2014-03-08 06:15:17,627] [Preprocessor.java:241] [main] Processing chromosome scaffold38920 Processing chromosome scaffold38920 INFO [2014-03-08 06:15:17,672] [Preprocessor.java:241] [main] Processing chromosome scaffold38922 Processing chromosome scaffold38922 INFO [2014-03-08 06:15:17,734] [Preprocessor.java:241] [main] Processing chromosome scaffold38934 Processing chromosome scaffold38934 INFO [2014-03-08 06:15:17,755] [Preprocessor.java:241] [main] Processing chromosome scaffold38944 Processing chromosome scaffold38944 INFO [2014-03-08 06:15:17,798] [Preprocessor.java:241] [main] Processing chromosome scaffold38952 Processing chromosome scaffold38952 INFO [2014-03-08 06:15:17,825] [Preprocessor.java:241] [main] Processing chromosome scaffold38966 Processing chromosome scaffold38966 INFO [2014-03-08 06:15:17,847] [Preprocessor.java:241] [main] Processing chromosome scaffold38974 Processing chromosome scaffold38974 INFO [2014-03-08 06:15:17,854] [Preprocessor.java:241] [main] Processing chromosome scaffold38976 Processing chromosome scaffold38976 INFO [2014-03-08 06:15:17,863] [Preprocessor.java:241] [main] Processing chromosome scaffold38978 Processing chromosome scaffold38978 INFO [2014-03-08 06:15:17,893] [Preprocessor.java:241] [main] Processing chromosome scaffold38980 Processing chromosome scaffold38980 INFO [2014-03-08 06:15:17,903] [Preprocessor.java:241] [main] Processing chromosome scaffold38984 Processing chromosome scaffold38984 INFO [2014-03-08 06:15:17,944] [Preprocessor.java:241] [main] Processing chromosome scaffold38990 Processing chromosome scaffold38990 INFO [2014-03-08 06:15:17,950] [Preprocessor.java:241] [main] Processing chromosome scaffold38996 Processing chromosome scaffold38996 INFO [2014-03-08 06:15:17,965] [Preprocessor.java:241] [main] Processing chromosome scaffold390 Processing chromosome scaffold390 INFO [2014-03-08 06:15:17,979] [Preprocessor.java:241] [main] Processing chromosome scaffold39000 Processing chromosome scaffold39000 INFO [2014-03-08 06:15:17,986] [Preprocessor.java:241] [main] Processing chromosome scaffold39008 Processing chromosome scaffold39008 INFO [2014-03-08 06:15:18,022] [Preprocessor.java:241] [main] Processing chromosome scaffold39014 Processing chromosome scaffold39014 INFO [2014-03-08 06:15:18,070] [Preprocessor.java:241] [main] Processing chromosome scaffold39028 Processing chromosome scaffold39028 INFO [2014-03-08 06:15:18,076] [Preprocessor.java:241] [main] Processing chromosome scaffold39030 Processing chromosome scaffold39030 INFO [2014-03-08 06:15:18,085] [Preprocessor.java:241] [main] Processing chromosome scaffold39040 Processing chromosome scaffold39040 INFO [2014-03-08 06:15:18,125] [Preprocessor.java:241] [main] Processing chromosome scaffold39050 Processing chromosome scaffold39050 INFO [2014-03-08 06:15:18,137] [Preprocessor.java:241] [main] Processing chromosome scaffold39064 Processing chromosome scaffold39064 INFO [2014-03-08 06:15:18,164] [Preprocessor.java:241] [main] Processing chromosome scaffold39066 Processing chromosome scaffold39066 INFO [2014-03-08 06:15:18,189] [Preprocessor.java:241] [main] Processing chromosome scaffold39068 Processing chromosome scaffold39068 INFO [2014-03-08 06:15:18,212] [Preprocessor.java:241] [main] Processing chromosome scaffold39074 Processing chromosome scaffold39074 INFO [2014-03-08 06:15:18,252] [Preprocessor.java:241] [main] Processing chromosome scaffold39078 Processing chromosome scaffold39078 INFO [2014-03-08 06:15:18,275] [Preprocessor.java:241] [main] Processing chromosome scaffold39080 Processing chromosome scaffold39080 INFO [2014-03-08 06:15:18,289] [Preprocessor.java:241] [main] Processing chromosome scaffold39088 Processing chromosome scaffold39088 INFO [2014-03-08 06:15:18,342] [Preprocessor.java:241] [main] Processing chromosome scaffold39096 Processing chromosome scaffold39096 INFO [2014-03-08 06:15:18,380] [Preprocessor.java:241] [main] Processing chromosome scaffold391 Processing chromosome scaffold391 INFO [2014-03-08 06:15:18,412] [Preprocessor.java:241] [main] Processing chromosome scaffold39120 Processing chromosome scaffold39120 INFO [2014-03-08 06:15:18,426] [Preprocessor.java:241] [main] Processing chromosome scaffold39122 Processing chromosome scaffold39122 INFO [2014-03-08 06:15:18,453] [Preprocessor.java:241] [main] Processing chromosome scaffold39126 Processing chromosome scaffold39126 INFO [2014-03-08 06:15:18,507] [Preprocessor.java:241] [main] Processing chromosome scaffold39134 Processing chromosome scaffold39134 INFO [2014-03-08 06:15:18,542] [Preprocessor.java:241] [main] Processing chromosome scaffold39142 Processing chromosome scaffold39142 INFO [2014-03-08 06:15:18,563] [Preprocessor.java:241] [main] Processing chromosome scaffold39144 Processing chromosome scaffold39144 INFO [2014-03-08 06:15:18,581] [Preprocessor.java:241] [main] Processing chromosome scaffold39156 Processing chromosome scaffold39156 INFO [2014-03-08 06:15:18,606] [Preprocessor.java:241] [main] Processing chromosome scaffold39158 Processing chromosome scaffold39158 INFO [2014-03-08 06:15:18,622] [Preprocessor.java:241] [main] Processing chromosome scaffold39174 Processing chromosome scaffold39174 INFO [2014-03-08 06:15:18,637] [Preprocessor.java:241] [main] Processing chromosome scaffold39176 Processing chromosome scaffold39176 INFO [2014-03-08 06:15:18,654] [Preprocessor.java:241] [main] Processing chromosome scaffold39180 Processing chromosome scaffold39180 INFO [2014-03-08 06:15:18,669] [Preprocessor.java:241] [main] Processing chromosome scaffold39184 Processing chromosome scaffold39184 INFO [2014-03-08 06:15:18,675] [Preprocessor.java:241] [main] Processing chromosome scaffold39196 Processing chromosome scaffold39196 INFO [2014-03-08 06:15:18,698] [Preprocessor.java:241] [main] Processing chromosome scaffold39198 Processing chromosome scaffold39198 INFO [2014-03-08 06:15:18,738] [Preprocessor.java:241] [main] Processing chromosome scaffold392 Processing chromosome scaffold392 INFO [2014-03-08 06:15:18,814] [Preprocessor.java:241] [main] Processing chromosome scaffold39202 Processing chromosome scaffold39202 INFO [2014-03-08 06:15:18,840] [Preprocessor.java:241] [main] Processing chromosome scaffold39212 Processing chromosome scaffold39212 INFO [2014-03-08 06:15:18,856] [Preprocessor.java:241] [main] Processing chromosome scaffold39214 Processing chromosome scaffold39214 INFO [2014-03-08 06:15:18,885] [Preprocessor.java:241] [main] Processing chromosome scaffold39220 Processing chromosome scaffold39220 INFO [2014-03-08 06:15:18,899] [Preprocessor.java:241] [main] Processing chromosome scaffold39222 Processing chromosome scaffold39222 INFO [2014-03-08 06:15:18,937] [Preprocessor.java:241] [main] Processing chromosome scaffold39240 Processing chromosome scaffold39240 INFO [2014-03-08 06:15:18,974] [Preprocessor.java:241] [main] Processing chromosome scaffold39244 Processing chromosome scaffold39244 INFO [2014-03-08 06:15:19,001] [Preprocessor.java:241] [main] Processing chromosome scaffold39258 Processing chromosome scaffold39258 INFO [2014-03-08 06:15:19,050] [Preprocessor.java:241] [main] Processing chromosome scaffold39262 Processing chromosome scaffold39262 INFO [2014-03-08 06:15:19,078] [Preprocessor.java:241] [main] Processing chromosome scaffold39268 Processing chromosome scaffold39268 INFO [2014-03-08 06:15:19,099] [Preprocessor.java:241] [main] Processing chromosome scaffold39272 Processing chromosome scaffold39272 INFO [2014-03-08 06:15:19,123] [Preprocessor.java:241] [main] Processing chromosome scaffold39274 Processing chromosome scaffold39274 INFO [2014-03-08 06:15:19,145] [Preprocessor.java:241] [main] Processing chromosome scaffold39292 Processing chromosome scaffold39292 INFO [2014-03-08 06:15:19,153] [Preprocessor.java:241] [main] Processing chromosome scaffold393 Processing chromosome scaffold393 INFO [2014-03-08 06:15:19,410] [Preprocessor.java:241] [main] Processing chromosome scaffold39316 Processing chromosome scaffold39316 INFO [2014-03-08 06:15:19,431] [Preprocessor.java:241] [main] Processing chromosome scaffold39320 Processing chromosome scaffold39320 INFO [2014-03-08 06:15:19,445] [Preprocessor.java:241] [main] Processing chromosome scaffold39326 Processing chromosome scaffold39326 INFO [2014-03-08 06:15:19,453] [Preprocessor.java:241] [main] Processing chromosome scaffold39334 Processing chromosome scaffold39334 INFO [2014-03-08 06:15:19,471] [Preprocessor.java:241] [main] Processing chromosome scaffold39346 Processing chromosome scaffold39346 INFO [2014-03-08 06:15:19,478] [Preprocessor.java:241] [main] Processing chromosome scaffold39352 Processing chromosome scaffold39352 INFO [2014-03-08 06:15:19,494] [Preprocessor.java:241] [main] Processing chromosome scaffold39358 Processing chromosome scaffold39358 INFO [2014-03-08 06:15:19,516] [Preprocessor.java:241] [main] Processing chromosome scaffold39364 Processing chromosome scaffold39364 INFO [2014-03-08 06:15:19,575] [Preprocessor.java:241] [main] Processing chromosome scaffold39366 Processing chromosome scaffold39366 INFO [2014-03-08 06:15:19,604] [Preprocessor.java:241] [main] Processing chromosome scaffold39368 Processing chromosome scaffold39368 INFO [2014-03-08 06:15:19,647] [Preprocessor.java:241] [main] Processing chromosome scaffold39380 Processing chromosome scaffold39380 INFO [2014-03-08 06:15:19,668] [Preprocessor.java:241] [main] Processing chromosome scaffold39384 Processing chromosome scaffold39384 INFO [2014-03-08 06:15:19,676] [Preprocessor.java:241] [main] Processing chromosome scaffold39390 Processing chromosome scaffold39390 INFO [2014-03-08 06:15:19,740] [Preprocessor.java:241] [main] Processing chromosome scaffold39394 Processing chromosome scaffold39394 INFO [2014-03-08 06:15:19,755] [Preprocessor.java:241] [main] Processing chromosome scaffold394 Processing chromosome scaffold394 INFO [2014-03-08 06:15:19,925] [Preprocessor.java:241] [main] Processing chromosome scaffold39410 Processing chromosome scaffold39410 INFO [2014-03-08 06:15:19,946] [Preprocessor.java:241] [main] Processing chromosome scaffold39412 Processing chromosome scaffold39412 INFO [2014-03-08 06:15:19,993] [Preprocessor.java:241] [main] Processing chromosome scaffold39424 Processing chromosome scaffold39424 INFO [2014-03-08 06:15:20,020] [Preprocessor.java:241] [main] Processing chromosome scaffold39464 Processing chromosome scaffold39464 INFO [2014-03-08 06:15:20,046] [Preprocessor.java:241] [main] Processing chromosome scaffold39470 Processing chromosome scaffold39470 INFO [2014-03-08 06:15:20,084] [Preprocessor.java:241] [main] Processing chromosome scaffold39472 Processing chromosome scaffold39472 INFO [2014-03-08 06:15:20,109] [Preprocessor.java:241] [main] Processing chromosome scaffold39476 Processing chromosome scaffold39476 INFO [2014-03-08 06:15:20,145] [Preprocessor.java:241] [main] Processing chromosome scaffold39482 Processing chromosome scaffold39482 INFO [2014-03-08 06:15:20,167] [Preprocessor.java:241] [main] Processing chromosome scaffold39488 Processing chromosome scaffold39488 INFO [2014-03-08 06:15:20,232] [Preprocessor.java:241] [main] Processing chromosome scaffold395 Processing chromosome scaffold395 INFO [2014-03-08 06:15:20,346] [Preprocessor.java:241] [main] Processing chromosome scaffold39500 Processing chromosome scaffold39500 INFO [2014-03-08 06:15:20,366] [Preprocessor.java:241] [main] Processing chromosome scaffold39508 Processing chromosome scaffold39508 INFO [2014-03-08 06:15:20,381] [Preprocessor.java:241] [main] Processing chromosome scaffold39514 Processing chromosome scaffold39514 INFO [2014-03-08 06:15:20,414] [Preprocessor.java:241] [main] Processing chromosome scaffold39522 Processing chromosome scaffold39522 INFO [2014-03-08 06:15:20,473] [Preprocessor.java:241] [main] Processing chromosome scaffold39524 Processing chromosome scaffold39524 INFO [2014-03-08 06:15:20,549] [Preprocessor.java:241] [main] Processing chromosome scaffold39526 Processing chromosome scaffold39526 INFO [2014-03-08 06:15:20,579] [Preprocessor.java:241] [main] Processing chromosome scaffold39536 Processing chromosome scaffold39536 INFO [2014-03-08 06:15:20,619] [Preprocessor.java:241] [main] Processing chromosome scaffold39570 Processing chromosome scaffold39570 INFO [2014-03-08 06:15:20,639] [Preprocessor.java:241] [main] Processing chromosome scaffold39572 Processing chromosome scaffold39572 INFO [2014-03-08 06:15:20,692] [Preprocessor.java:241] [main] Processing chromosome scaffold39574 Processing chromosome scaffold39574 INFO [2014-03-08 06:15:20,738] [Preprocessor.java:241] [main] Processing chromosome scaffold39580 Processing chromosome scaffold39580 INFO [2014-03-08 06:15:20,780] [Preprocessor.java:241] [main] Processing chromosome scaffold39582 Processing chromosome scaffold39582 INFO [2014-03-08 06:15:20,812] [Preprocessor.java:241] [main] Processing chromosome scaffold39592 Processing chromosome scaffold39592 INFO [2014-03-08 06:15:20,855] [Preprocessor.java:241] [main] Processing chromosome scaffold39594 Processing chromosome scaffold39594 INFO [2014-03-08 06:15:20,888] [Preprocessor.java:241] [main] Processing chromosome scaffold39598 Processing chromosome scaffold39598 INFO [2014-03-08 06:15:20,893] [Preprocessor.java:241] [main] Processing chromosome scaffold396 Processing chromosome scaffold396 INFO [2014-03-08 06:15:21,004] [Preprocessor.java:241] [main] Processing chromosome scaffold39600 Processing chromosome scaffold39600 INFO [2014-03-08 06:15:21,044] [Preprocessor.java:241] [main] Processing chromosome scaffold39620 Processing chromosome scaffold39620 INFO [2014-03-08 06:15:21,060] [Preprocessor.java:241] [main] Processing chromosome scaffold39624 Processing chromosome scaffold39624 INFO [2014-03-08 06:15:21,073] [Preprocessor.java:241] [main] Processing chromosome scaffold39634 Processing chromosome scaffold39634 INFO [2014-03-08 06:15:21,122] [Preprocessor.java:241] [main] Processing chromosome scaffold39640 Processing chromosome scaffold39640 INFO [2014-03-08 06:15:21,139] [Preprocessor.java:241] [main] Processing chromosome scaffold39642 Processing chromosome scaffold39642 INFO [2014-03-08 06:15:21,155] [Preprocessor.java:241] [main] Processing chromosome scaffold39652 Processing chromosome scaffold39652 INFO [2014-03-08 06:15:21,165] [Preprocessor.java:241] [main] Processing chromosome scaffold39688 Processing chromosome scaffold39688 INFO [2014-03-08 06:15:21,207] [Preprocessor.java:241] [main] Processing chromosome scaffold39694 Processing chromosome scaffold39694 INFO [2014-03-08 06:15:21,236] [Preprocessor.java:241] [main] Processing chromosome scaffold39696 Processing chromosome scaffold39696 INFO [2014-03-08 06:15:21,259] [Preprocessor.java:241] [main] Processing chromosome scaffold397 Processing chromosome scaffold397 INFO [2014-03-08 06:15:21,274] [Preprocessor.java:241] [main] Processing chromosome scaffold39712 Processing chromosome scaffold39712 INFO [2014-03-08 06:15:21,294] [Preprocessor.java:241] [main] Processing chromosome scaffold39716 Processing chromosome scaffold39716 INFO [2014-03-08 06:15:21,339] [Preprocessor.java:241] [main] Processing chromosome scaffold39720 Processing chromosome scaffold39720 INFO [2014-03-08 06:15:21,379] [Preprocessor.java:241] [main] Processing chromosome scaffold39724 Processing chromosome scaffold39724 INFO [2014-03-08 06:15:21,412] [Preprocessor.java:241] [main] Processing chromosome scaffold39730 Processing chromosome scaffold39730 INFO [2014-03-08 06:15:21,465] [Preprocessor.java:241] [main] Processing chromosome scaffold39732 Processing chromosome scaffold39732 INFO [2014-03-08 06:15:21,516] [Preprocessor.java:241] [main] Processing chromosome scaffold39740 Processing chromosome scaffold39740 INFO [2014-03-08 06:15:21,572] [Preprocessor.java:241] [main] Processing chromosome scaffold39744 Processing chromosome scaffold39744 INFO [2014-03-08 06:15:21,634] [Preprocessor.java:241] [main] Processing chromosome scaffold39754 Processing chromosome scaffold39754 INFO [2014-03-08 06:15:21,706] [Preprocessor.java:241] [main] Processing chromosome scaffold39758 Processing chromosome scaffold39758 INFO [2014-03-08 06:15:21,762] [Preprocessor.java:241] [main] Processing chromosome scaffold39778 Processing chromosome scaffold39778 INFO [2014-03-08 06:15:21,838] [Preprocessor.java:241] [main] Processing chromosome scaffold39790 Processing chromosome scaffold39790 INFO [2014-03-08 06:15:21,867] [Preprocessor.java:241] [main] Processing chromosome scaffold398 Processing chromosome scaffold398 INFO [2014-03-08 06:15:21,898] [Preprocessor.java:241] [main] Processing chromosome scaffold39800 Processing chromosome scaffold39800 INFO [2014-03-08 06:15:21,923] [Preprocessor.java:241] [main] Processing chromosome scaffold39804 Processing chromosome scaffold39804 INFO [2014-03-08 06:15:21,967] [Preprocessor.java:241] [main] Processing chromosome scaffold39858 Processing chromosome scaffold39858 INFO [2014-03-08 06:15:21,987] [Preprocessor.java:241] [main] Processing chromosome scaffold39878 Processing chromosome scaffold39878 INFO [2014-03-08 06:15:22,018] [Preprocessor.java:241] [main] Processing chromosome scaffold39880 Processing chromosome scaffold39880 INFO [2014-03-08 06:15:22,039] [Preprocessor.java:241] [main] Processing chromosome scaffold39884 Processing chromosome scaffold39884 INFO [2014-03-08 06:15:22,079] [Preprocessor.java:241] [main] Processing chromosome scaffold39894 Processing chromosome scaffold39894 INFO [2014-03-08 06:15:22,114] [Preprocessor.java:241] [main] Processing chromosome scaffold399 Processing chromosome scaffold399 INFO [2014-03-08 06:15:22,200] [Preprocessor.java:241] [main] Processing chromosome scaffold39900 Processing chromosome scaffold39900 INFO [2014-03-08 06:15:22,217] [Preprocessor.java:241] [main] Processing chromosome scaffold39946 Processing chromosome scaffold39946 INFO [2014-03-08 06:15:22,241] [Preprocessor.java:241] [main] Processing chromosome scaffold39958 Processing chromosome scaffold39958 INFO [2014-03-08 06:15:22,266] [Preprocessor.java:241] [main] Processing chromosome scaffold39960 Processing chromosome scaffold39960 INFO [2014-03-08 06:15:22,314] [Preprocessor.java:241] [main] Processing chromosome scaffold39966 Processing chromosome scaffold39966 INFO [2014-03-08 06:15:22,336] [Preprocessor.java:241] [main] Processing chromosome scaffold39972 Processing chromosome scaffold39972 INFO [2014-03-08 06:15:22,358] [Preprocessor.java:241] [main] Processing chromosome scaffold39974 Processing chromosome scaffold39974 INFO [2014-03-08 06:15:22,376] [Preprocessor.java:241] [main] Processing chromosome scaffold39976 Processing chromosome scaffold39976 INFO [2014-03-08 06:15:22,406] [Preprocessor.java:241] [main] Processing chromosome scaffold39984 Processing chromosome scaffold39984 INFO [2014-03-08 06:15:22,420] [Preprocessor.java:241] [main] Processing chromosome scaffold39986 Processing chromosome scaffold39986 INFO [2014-03-08 06:15:22,468] [Preprocessor.java:241] [main] Processing chromosome scaffold39990 Processing chromosome scaffold39990 INFO [2014-03-08 06:15:22,520] [Preprocessor.java:241] [main] Processing chromosome scaffold39998 Processing chromosome scaffold39998 INFO [2014-03-08 06:15:22,558] [Preprocessor.java:241] [main] Processing chromosome scaffold4 Processing chromosome scaffold4 .INFO [2014-03-08 06:15:22,685] [Preprocessor.java:241] [main] Processing chromosome scaffold40 Processing chromosome scaffold40 INFO [2014-03-08 06:15:22,719] [Preprocessor.java:241] [main] Processing chromosome scaffold400 Processing chromosome scaffold400 INFO [2014-03-08 06:15:22,805] [Preprocessor.java:241] [main] Processing chromosome scaffold40002 Processing chromosome scaffold40002 INFO [2014-03-08 06:15:22,857] [Preprocessor.java:241] [main] Processing chromosome scaffold40006 Processing chromosome scaffold40006 INFO [2014-03-08 06:15:22,919] [Preprocessor.java:241] [main] Processing chromosome scaffold40010 Processing chromosome scaffold40010 INFO [2014-03-08 06:15:22,941] [Preprocessor.java:241] [main] Processing chromosome scaffold40016 Processing chromosome scaffold40016 INFO [2014-03-08 06:15:22,966] [Preprocessor.java:241] [main] Processing chromosome scaffold40026 Processing chromosome scaffold40026 INFO [2014-03-08 06:15:23,005] [Preprocessor.java:241] [main] Processing chromosome scaffold40030 Processing chromosome scaffold40030 INFO [2014-03-08 06:15:23,041] [Preprocessor.java:241] [main] Processing chromosome scaffold40038 Processing chromosome scaffold40038 INFO [2014-03-08 06:15:23,110] [Preprocessor.java:241] [main] Processing chromosome scaffold40050 Processing chromosome scaffold40050 INFO [2014-03-08 06:15:23,140] [Preprocessor.java:241] [main] Processing chromosome scaffold40054 Processing chromosome scaffold40054 INFO [2014-03-08 06:15:23,162] [Preprocessor.java:241] [main] Processing chromosome scaffold40068 Processing chromosome scaffold40068 INFO [2014-03-08 06:15:23,177] [Preprocessor.java:241] [main] Processing chromosome scaffold40072 Processing chromosome scaffold40072 INFO [2014-03-08 06:15:23,224] [Preprocessor.java:241] [main] Processing chromosome scaffold40076 Processing chromosome scaffold40076 INFO [2014-03-08 06:15:23,247] [Preprocessor.java:241] [main] Processing chromosome scaffold40080 Processing chromosome scaffold40080 INFO [2014-03-08 06:15:23,264] [Preprocessor.java:241] [main] Processing chromosome scaffold40084 Processing chromosome scaffold40084 INFO [2014-03-08 06:15:23,333] [Preprocessor.java:241] [main] Processing chromosome scaffold40088 Processing chromosome scaffold40088 INFO [2014-03-08 06:15:23,370] [Preprocessor.java:241] [main] Processing chromosome scaffold40094 Processing chromosome scaffold40094 INFO [2014-03-08 06:15:23,429] [Preprocessor.java:241] [main] Processing chromosome scaffold401 Processing chromosome scaffold401 INFO [2014-03-08 06:15:23,477] [Preprocessor.java:241] [main] Processing chromosome scaffold40100 Processing chromosome scaffold40100 INFO [2014-03-08 06:15:23,511] [Preprocessor.java:241] [main] Processing chromosome scaffold40104 Processing chromosome scaffold40104 INFO [2014-03-08 06:15:23,533] [Preprocessor.java:241] [main] Processing chromosome scaffold40106 Processing chromosome scaffold40106 INFO [2014-03-08 06:15:23,586] [Preprocessor.java:241] [main] Processing chromosome scaffold40114 Processing chromosome scaffold40114 INFO [2014-03-08 06:15:23,649] [Preprocessor.java:241] [main] Processing chromosome scaffold40120 Processing chromosome scaffold40120 INFO [2014-03-08 06:15:23,682] [Preprocessor.java:241] [main] Processing chromosome scaffold40134 Processing chromosome scaffold40134 INFO [2014-03-08 06:15:23,715] [Preprocessor.java:241] [main] Processing chromosome scaffold40140 Processing chromosome scaffold40140 INFO [2014-03-08 06:15:23,738] [Preprocessor.java:241] [main] Processing chromosome scaffold40150 Processing chromosome scaffold40150 INFO [2014-03-08 06:15:23,783] [Preprocessor.java:241] [main] Processing chromosome scaffold40154 Processing chromosome scaffold40154 INFO [2014-03-08 06:15:23,815] [Preprocessor.java:241] [main] Processing chromosome scaffold40156 Processing chromosome scaffold40156 INFO [2014-03-08 06:15:23,855] [Preprocessor.java:241] [main] Processing chromosome scaffold40162 Processing chromosome scaffold40162 INFO [2014-03-08 06:15:23,880] [Preprocessor.java:241] [main] Processing chromosome scaffold40164 Processing chromosome scaffold40164 INFO [2014-03-08 06:15:23,893] [Preprocessor.java:241] [main] Processing chromosome scaffold40172 Processing chromosome scaffold40172 INFO [2014-03-08 06:15:23,916] [Preprocessor.java:241] [main] Processing chromosome scaffold40178 Processing chromosome scaffold40178 INFO [2014-03-08 06:15:23,929] [Preprocessor.java:241] [main] Processing chromosome scaffold40182 Processing chromosome scaffold40182 INFO [2014-03-08 06:15:23,992] [Preprocessor.java:241] [main] Processing chromosome scaffold40184 Processing chromosome scaffold40184 INFO [2014-03-08 06:15:24,034] [Preprocessor.java:241] [main] Processing chromosome scaffold40186 Processing chromosome scaffold40186 INFO [2014-03-08 06:15:24,066] [Preprocessor.java:241] [main] Processing chromosome scaffold40194 Processing chromosome scaffold40194 INFO [2014-03-08 06:15:24,091] [Preprocessor.java:241] [main] Processing chromosome scaffold40196 Processing chromosome scaffold40196 INFO [2014-03-08 06:15:24,104] [Preprocessor.java:241] [main] Processing chromosome scaffold402 Processing chromosome scaffold402 INFO [2014-03-08 06:15:24,200] [Preprocessor.java:241] [main] Processing chromosome scaffold40208 Processing chromosome scaffold40208 INFO [2014-03-08 06:15:24,226] [Preprocessor.java:241] [main] Processing chromosome scaffold40216 Processing chromosome scaffold40216 INFO [2014-03-08 06:15:24,234] [Preprocessor.java:241] [main] Processing chromosome scaffold40224 Processing chromosome scaffold40224 INFO [2014-03-08 06:15:24,268] [Preprocessor.java:241] [main] Processing chromosome scaffold40226 Processing chromosome scaffold40226 INFO [2014-03-08 06:15:24,309] [Preprocessor.java:241] [main] Processing chromosome scaffold40230 Processing chromosome scaffold40230 INFO [2014-03-08 06:15:24,361] [Preprocessor.java:241] [main] Processing chromosome scaffold40234 Processing chromosome scaffold40234 INFO [2014-03-08 06:15:24,408] [Preprocessor.java:241] [main] Processing chromosome scaffold40246 Processing chromosome scaffold40246 INFO [2014-03-08 06:15:24,456] [Preprocessor.java:241] [main] Processing chromosome scaffold40254 Processing chromosome scaffold40254 INFO [2014-03-08 06:15:24,502] [Preprocessor.java:241] [main] Processing chromosome scaffold40264 Processing chromosome scaffold40264 INFO [2014-03-08 06:15:24,550] [Preprocessor.java:241] [main] Processing chromosome scaffold40270 Processing chromosome scaffold40270 INFO [2014-03-08 06:15:24,578] [Preprocessor.java:241] [main] Processing chromosome scaffold40282 Processing chromosome scaffold40282 INFO [2014-03-08 06:15:24,613] [Preprocessor.java:241] [main] Processing chromosome scaffold40290 Processing chromosome scaffold40290 INFO [2014-03-08 06:15:24,639] [Preprocessor.java:241] [main] Processing chromosome scaffold403 Processing chromosome scaffold403 INFO [2014-03-08 06:15:24,683] [Preprocessor.java:241] [main] Processing chromosome scaffold40342 Processing chromosome scaffold40342 INFO [2014-03-08 06:15:24,689] [Preprocessor.java:241] [main] Processing chromosome scaffold40346 Processing chromosome scaffold40346 INFO [2014-03-08 06:15:24,710] [Preprocessor.java:241] [main] Processing chromosome scaffold40366 Processing chromosome scaffold40366 INFO [2014-03-08 06:15:24,727] [Preprocessor.java:241] [main] Processing chromosome scaffold40368 Processing chromosome scaffold40368 INFO [2014-03-08 06:15:24,743] [Preprocessor.java:241] [main] Processing chromosome scaffold40380 Processing chromosome scaffold40380 INFO [2014-03-08 06:15:24,785] [Preprocessor.java:241] [main] Processing chromosome scaffold40388 Processing chromosome scaffold40388 INFO [2014-03-08 06:15:24,841] [Preprocessor.java:241] [main] Processing chromosome scaffold40390 Processing chromosome scaffold40390 INFO [2014-03-08 06:15:24,898] [Preprocessor.java:241] [main] Processing chromosome scaffold40396 Processing chromosome scaffold40396 INFO [2014-03-08 06:15:24,914] [Preprocessor.java:241] [main] Processing chromosome scaffold404 Processing chromosome scaffold404 INFO [2014-03-08 06:15:24,974] [Preprocessor.java:241] [main] Processing chromosome scaffold40404 Processing chromosome scaffold40404 INFO [2014-03-08 06:15:25,008] [Preprocessor.java:241] [main] Processing chromosome scaffold40406 Processing chromosome scaffold40406 INFO [2014-03-08 06:15:25,026] [Preprocessor.java:241] [main] Processing chromosome scaffold40412 Processing chromosome scaffold40412 INFO [2014-03-08 06:15:25,058] [Preprocessor.java:241] [main] Processing chromosome scaffold40420 Processing chromosome scaffold40420 INFO [2014-03-08 06:15:25,112] [Preprocessor.java:241] [main] Processing chromosome scaffold40424 Processing chromosome scaffold40424 INFO [2014-03-08 06:15:25,131] [Preprocessor.java:241] [main] Processing chromosome scaffold40438 Processing chromosome scaffold40438 INFO [2014-03-08 06:15:25,155] [Preprocessor.java:241] [main] Processing chromosome scaffold40440 Processing chromosome scaffold40440 INFO [2014-03-08 06:15:25,188] [Preprocessor.java:241] [main] Processing chromosome scaffold40442 Processing chromosome scaffold40442 INFO [2014-03-08 06:15:25,247] [Preprocessor.java:241] [main] Processing chromosome scaffold40454 Processing chromosome scaffold40454 INFO [2014-03-08 06:15:25,276] [Preprocessor.java:241] [main] Processing chromosome scaffold40456 Processing chromosome scaffold40456 INFO [2014-03-08 06:15:25,330] [Preprocessor.java:241] [main] Processing chromosome scaffold40476 Processing chromosome scaffold40476 INFO [2014-03-08 06:15:25,364] [Preprocessor.java:241] [main] Processing chromosome scaffold40492 Processing chromosome scaffold40492 INFO [2014-03-08 06:15:25,377] [Preprocessor.java:241] [main] Processing chromosome scaffold40512 Processing chromosome scaffold40512 INFO [2014-03-08 06:15:25,395] [Preprocessor.java:241] [main] Processing chromosome scaffold40514 Processing chromosome scaffold40514 INFO [2014-03-08 06:15:25,434] [Preprocessor.java:241] [main] Processing chromosome scaffold40526 Processing chromosome scaffold40526 INFO [2014-03-08 06:15:25,473] [Preprocessor.java:241] [main] Processing chromosome scaffold40534 Processing chromosome scaffold40534 INFO [2014-03-08 06:15:25,547] [Preprocessor.java:241] [main] Processing chromosome scaffold40548 Processing chromosome scaffold40548 INFO [2014-03-08 06:15:25,595] [Preprocessor.java:241] [main] Processing chromosome scaffold40556 Processing chromosome scaffold40556 INFO [2014-03-08 06:15:25,619] [Preprocessor.java:241] [main] Processing chromosome scaffold40560 Processing chromosome scaffold40560 INFO [2014-03-08 06:15:25,634] [Preprocessor.java:241] [main] Processing chromosome scaffold40564 Processing chromosome scaffold40564 INFO [2014-03-08 06:15:25,664] [Preprocessor.java:241] [main] Processing chromosome scaffold40584 Processing chromosome scaffold40584 INFO [2014-03-08 06:15:25,682] [Preprocessor.java:241] [main] Processing chromosome scaffold40586 Processing chromosome scaffold40586 INFO [2014-03-08 06:15:25,696] [Preprocessor.java:241] [main] Processing chromosome scaffold40598 Processing chromosome scaffold40598 INFO [2014-03-08 06:15:25,735] [Preprocessor.java:241] [main] Processing chromosome scaffold406 Processing chromosome scaffold406 INFO [2014-03-08 06:15:25,842] [Preprocessor.java:241] [main] Processing chromosome scaffold40606 Processing chromosome scaffold40606 INFO [2014-03-08 06:15:25,867] [Preprocessor.java:241] [main] Processing chromosome scaffold40610 Processing chromosome scaffold40610 INFO [2014-03-08 06:15:25,876] [Preprocessor.java:241] [main] Processing chromosome scaffold40612 Processing chromosome scaffold40612 INFO [2014-03-08 06:15:25,923] [Preprocessor.java:241] [main] Processing chromosome scaffold40614 Processing chromosome scaffold40614 INFO [2014-03-08 06:15:25,950] [Preprocessor.java:241] [main] Processing chromosome scaffold40624 Processing chromosome scaffold40624 INFO [2014-03-08 06:15:25,963] [Preprocessor.java:241] [main] Processing chromosome scaffold40634 Processing chromosome scaffold40634 INFO [2014-03-08 06:15:26,018] [Preprocessor.java:241] [main] Processing chromosome scaffold40638 Processing chromosome scaffold40638 INFO [2014-03-08 06:15:26,048] [Preprocessor.java:241] [main] Processing chromosome scaffold40644 Processing chromosome scaffold40644 INFO [2014-03-08 06:15:26,074] [Preprocessor.java:241] [main] Processing chromosome scaffold40658 Processing chromosome scaffold40658 INFO [2014-03-08 06:15:26,137] [Preprocessor.java:241] [main] Processing chromosome scaffold40664 Processing chromosome scaffold40664 INFO [2014-03-08 06:15:26,200] [Preprocessor.java:241] [main] Processing chromosome scaffold40680 Processing chromosome scaffold40680 INFO [2014-03-08 06:15:26,235] [Preprocessor.java:241] [main] Processing chromosome scaffold40690 Processing chromosome scaffold40690 INFO [2014-03-08 06:15:26,252] [Preprocessor.java:241] [main] Processing chromosome scaffold407 Processing chromosome scaffold407 INFO [2014-03-08 06:15:26,285] [Preprocessor.java:241] [main] Processing chromosome scaffold40702 Processing chromosome scaffold40702 INFO [2014-03-08 06:15:26,311] [Preprocessor.java:241] [main] Processing chromosome scaffold40740 Processing chromosome scaffold40740 INFO [2014-03-08 06:15:26,391] [Preprocessor.java:241] [main] Processing chromosome scaffold40744 Processing chromosome scaffold40744 INFO [2014-03-08 06:15:26,431] [Preprocessor.java:241] [main] Processing chromosome scaffold40752 Processing chromosome scaffold40752 INFO [2014-03-08 06:15:26,437] [Preprocessor.java:241] [main] Processing chromosome scaffold40786 Processing chromosome scaffold40786 INFO [2014-03-08 06:15:26,451] [Preprocessor.java:241] [main] Processing chromosome scaffold40794 Processing chromosome scaffold40794 INFO [2014-03-08 06:15:26,466] [Preprocessor.java:241] [main] Processing chromosome scaffold408 Processing chromosome scaffold408 INFO [2014-03-08 06:15:26,622] [Preprocessor.java:241] [main] Processing chromosome scaffold40808 Processing chromosome scaffold40808 INFO [2014-03-08 06:15:26,639] [Preprocessor.java:241] [main] Processing chromosome scaffold40820 Processing chromosome scaffold40820 INFO [2014-03-08 06:15:26,736] [Preprocessor.java:241] [main] Processing chromosome scaffold40822 Processing chromosome scaffold40822 INFO [2014-03-08 06:15:26,752] [Preprocessor.java:241] [main] Processing chromosome scaffold40828 Processing chromosome scaffold40828 INFO [2014-03-08 06:15:26,777] [Preprocessor.java:241] [main] Processing chromosome scaffold40832 Processing chromosome scaffold40832 INFO [2014-03-08 06:15:26,837] [Preprocessor.java:241] [main] Processing chromosome scaffold40836 Processing chromosome scaffold40836 INFO [2014-03-08 06:15:26,882] [Preprocessor.java:241] [main] Processing chromosome scaffold40856 Processing chromosome scaffold40856 INFO [2014-03-08 06:15:26,908] [Preprocessor.java:241] [main] Processing chromosome scaffold40868 Processing chromosome scaffold40868 INFO [2014-03-08 06:15:26,929] [Preprocessor.java:241] [main] Processing chromosome scaffold40874 Processing chromosome scaffold40874 INFO [2014-03-08 06:15:26,983] [Preprocessor.java:241] [main] Processing chromosome scaffold40894 Processing chromosome scaffold40894 INFO [2014-03-08 06:15:27,032] [Preprocessor.java:241] [main] Processing chromosome scaffold409 Processing chromosome scaffold409 INFO [2014-03-08 06:15:27,063] [Preprocessor.java:241] [main] Processing chromosome scaffold40910 Processing chromosome scaffold40910 INFO [2014-03-08 06:15:27,126] [Preprocessor.java:241] [main] Processing chromosome scaffold40916 Processing chromosome scaffold40916 INFO [2014-03-08 06:15:27,212] [Preprocessor.java:241] [main] Processing chromosome scaffold40928 Processing chromosome scaffold40928 INFO [2014-03-08 06:15:27,248] [Preprocessor.java:241] [main] Processing chromosome scaffold40938 Processing chromosome scaffold40938 INFO [2014-03-08 06:15:27,283] [Preprocessor.java:241] [main] Processing chromosome scaffold40948 Processing chromosome scaffold40948 INFO [2014-03-08 06:15:27,335] [Preprocessor.java:241] [main] Processing chromosome scaffold40950 Processing chromosome scaffold40950 INFO [2014-03-08 06:15:27,382] [Preprocessor.java:241] [main] Processing chromosome scaffold40952 Processing chromosome scaffold40952 INFO [2014-03-08 06:15:27,402] [Preprocessor.java:241] [main] Processing chromosome scaffold40960 Processing chromosome scaffold40960 INFO [2014-03-08 06:15:27,508] [Preprocessor.java:241] [main] Processing chromosome scaffold40974 Processing chromosome scaffold40974 INFO [2014-03-08 06:15:27,518] [Preprocessor.java:241] [main] Processing chromosome scaffold40980 Processing chromosome scaffold40980 INFO [2014-03-08 06:15:27,549] [Preprocessor.java:241] [main] Processing chromosome scaffold40982 Processing chromosome scaffold40982 INFO [2014-03-08 06:15:27,585] [Preprocessor.java:241] [main] Processing chromosome scaffold40988 Processing chromosome scaffold40988 INFO [2014-03-08 06:15:27,604] [Preprocessor.java:241] [main] Processing chromosome scaffold40994 Processing chromosome scaffold40994 INFO [2014-03-08 06:15:27,623] [Preprocessor.java:241] [main] Processing chromosome scaffold410 Processing chromosome scaffold410 INFO [2014-03-08 06:15:27,769] [Preprocessor.java:241] [main] Processing chromosome scaffold41008 Processing chromosome scaffold41008 INFO [2014-03-08 06:15:27,792] [Preprocessor.java:241] [main] Processing chromosome scaffold41014 Processing chromosome scaffold41014 INFO [2014-03-08 06:15:27,801] [Preprocessor.java:241] [main] Processing chromosome scaffold41022 Processing chromosome scaffold41022 .INFO [2014-03-08 06:15:27,827] [Preprocessor.java:241] [main] Processing chromosome scaffold41034 Processing chromosome scaffold41034 INFO [2014-03-08 06:15:27,893] [Preprocessor.java:241] [main] Processing chromosome scaffold41054 Processing chromosome scaffold41054 INFO [2014-03-08 06:15:27,910] [Preprocessor.java:241] [main] Processing chromosome scaffold41064 Processing chromosome scaffold41064 INFO [2014-03-08 06:15:27,970] [Preprocessor.java:241] [main] Processing chromosome scaffold41082 Processing chromosome scaffold41082 INFO [2014-03-08 06:15:28,010] [Preprocessor.java:241] [main] Processing chromosome scaffold41086 Processing chromosome scaffold41086 INFO [2014-03-08 06:15:28,051] [Preprocessor.java:241] [main] Processing chromosome scaffold41090 Processing chromosome scaffold41090 INFO [2014-03-08 06:15:28,071] [Preprocessor.java:241] [main] Processing chromosome scaffold411 Processing chromosome scaffold411 INFO [2014-03-08 06:15:28,090] [Preprocessor.java:241] [main] Processing chromosome scaffold41136 Processing chromosome scaffold41136 INFO [2014-03-08 06:15:28,140] [Preprocessor.java:241] [main] Processing chromosome scaffold41162 Processing chromosome scaffold41162 INFO [2014-03-08 06:15:28,151] [Preprocessor.java:241] [main] Processing chromosome scaffold41164 Processing chromosome scaffold41164 INFO [2014-03-08 06:15:28,214] [Preprocessor.java:241] [main] Processing chromosome scaffold41174 Processing chromosome scaffold41174 INFO [2014-03-08 06:15:28,261] [Preprocessor.java:241] [main] Processing chromosome scaffold412 Processing chromosome scaffold412 INFO [2014-03-08 06:15:28,357] [Preprocessor.java:241] [main] Processing chromosome scaffold41206 Processing chromosome scaffold41206 INFO [2014-03-08 06:15:28,391] [Preprocessor.java:241] [main] Processing chromosome scaffold41210 Processing chromosome scaffold41210 INFO [2014-03-08 06:15:28,458] [Preprocessor.java:241] [main] Processing chromosome scaffold41212 Processing chromosome scaffold41212 INFO [2014-03-08 06:15:28,490] [Preprocessor.java:241] [main] Processing chromosome scaffold41214 Processing chromosome scaffold41214 INFO [2014-03-08 06:15:28,516] [Preprocessor.java:241] [main] Processing chromosome scaffold41220 Processing chromosome scaffold41220 INFO [2014-03-08 06:15:28,555] [Preprocessor.java:241] [main] Processing chromosome scaffold41228 Processing chromosome scaffold41228 INFO [2014-03-08 06:15:28,586] [Preprocessor.java:241] [main] Processing chromosome scaffold41242 Processing chromosome scaffold41242 INFO [2014-03-08 06:15:28,624] [Preprocessor.java:241] [main] Processing chromosome scaffold41248 Processing chromosome scaffold41248 INFO [2014-03-08 06:15:28,654] [Preprocessor.java:241] [main] Processing chromosome scaffold41296 Processing chromosome scaffold41296 INFO [2014-03-08 06:15:28,713] [Preprocessor.java:241] [main] Processing chromosome scaffold413 Processing chromosome scaffold413 INFO [2014-03-08 06:15:28,857] [Preprocessor.java:241] [main] Processing chromosome scaffold41304 Processing chromosome scaffold41304 INFO [2014-03-08 06:15:28,919] [Preprocessor.java:241] [main] Processing chromosome scaffold41312 Processing chromosome scaffold41312 INFO [2014-03-08 06:15:28,950] [Preprocessor.java:241] [main] Processing chromosome scaffold41316 Processing chromosome scaffold41316 INFO [2014-03-08 06:15:29,020] [Preprocessor.java:241] [main] Processing chromosome scaffold41318 Processing chromosome scaffold41318 INFO [2014-03-08 06:15:29,029] [Preprocessor.java:241] [main] Processing chromosome scaffold41344 Processing chromosome scaffold41344 INFO [2014-03-08 06:15:29,051] [Preprocessor.java:241] [main] Processing chromosome scaffold41346 Processing chromosome scaffold41346 INFO [2014-03-08 06:15:29,079] [Preprocessor.java:241] [main] Processing chromosome scaffold41356 Processing chromosome scaffold41356 INFO [2014-03-08 06:15:29,099] [Preprocessor.java:241] [main] Processing chromosome scaffold41358 Processing chromosome scaffold41358 INFO [2014-03-08 06:15:29,170] [Preprocessor.java:241] [main] Processing chromosome scaffold41372 Processing chromosome scaffold41372 INFO [2014-03-08 06:15:29,189] [Preprocessor.java:241] [main] Processing chromosome scaffold41380 Processing chromosome scaffold41380 INFO [2014-03-08 06:15:29,227] [Preprocessor.java:241] [main] Processing chromosome scaffold41388 Processing chromosome scaffold41388 INFO [2014-03-08 06:15:29,250] [Preprocessor.java:241] [main] Processing chromosome scaffold41390 Processing chromosome scaffold41390 INFO [2014-03-08 06:15:29,290] [Preprocessor.java:241] [main] Processing chromosome scaffold41398 Processing chromosome scaffold41398 INFO [2014-03-08 06:15:29,301] [Preprocessor.java:241] [main] Processing chromosome scaffold41400 Processing chromosome scaffold41400 INFO [2014-03-08 06:15:29,335] [Preprocessor.java:241] [main] Processing chromosome scaffold41416 Processing chromosome scaffold41416 INFO [2014-03-08 06:15:29,396] [Preprocessor.java:241] [main] Processing chromosome scaffold41436 Processing chromosome scaffold41436 INFO [2014-03-08 06:15:29,426] [Preprocessor.java:241] [main] Processing chromosome scaffold41442 Processing chromosome scaffold41442 INFO [2014-03-08 06:15:29,440] [Preprocessor.java:241] [main] Processing chromosome scaffold41448 Processing chromosome scaffold41448 INFO [2014-03-08 06:15:29,470] [Preprocessor.java:241] [main] Processing chromosome scaffold41452 Processing chromosome scaffold41452 INFO [2014-03-08 06:15:29,504] [Preprocessor.java:241] [main] Processing chromosome scaffold41466 Processing chromosome scaffold41466 INFO [2014-03-08 06:15:29,516] [Preprocessor.java:241] [main] Processing chromosome scaffold41470 Processing chromosome scaffold41470 INFO [2014-03-08 06:15:29,527] [Preprocessor.java:241] [main] Processing chromosome scaffold41472 Processing chromosome scaffold41472 INFO [2014-03-08 06:15:29,569] [Preprocessor.java:241] [main] Processing chromosome scaffold41480 Processing chromosome scaffold41480 INFO [2014-03-08 06:15:29,614] [Preprocessor.java:241] [main] Processing chromosome scaffold415 Processing chromosome scaffold415 INFO [2014-03-08 06:15:29,632] [Preprocessor.java:241] [main] Processing chromosome scaffold41502 Processing chromosome scaffold41502 INFO [2014-03-08 06:15:29,688] [Preprocessor.java:241] [main] Processing chromosome scaffold41522 Processing chromosome scaffold41522 INFO [2014-03-08 06:15:29,735] [Preprocessor.java:241] [main] Processing chromosome scaffold41530 Processing chromosome scaffold41530 INFO [2014-03-08 06:15:29,798] [Preprocessor.java:241] [main] Processing chromosome scaffold41534 Processing chromosome scaffold41534 INFO [2014-03-08 06:15:29,835] [Preprocessor.java:241] [main] Processing chromosome scaffold41540 Processing chromosome scaffold41540 INFO [2014-03-08 06:15:29,890] [Preprocessor.java:241] [main] Processing chromosome scaffold41546 Processing chromosome scaffold41546 INFO [2014-03-08 06:15:29,929] [Preprocessor.java:241] [main] Processing chromosome scaffold41550 Processing chromosome scaffold41550 INFO [2014-03-08 06:15:29,963] [Preprocessor.java:241] [main] Processing chromosome scaffold41560 Processing chromosome scaffold41560 INFO [2014-03-08 06:15:29,984] [Preprocessor.java:241] [main] Processing chromosome scaffold41568 Processing chromosome scaffold41568 INFO [2014-03-08 06:15:30,004] [Preprocessor.java:241] [main] Processing chromosome scaffold41572 Processing chromosome scaffold41572 INFO [2014-03-08 06:15:30,061] [Preprocessor.java:241] [main] Processing chromosome scaffold41588 Processing chromosome scaffold41588 INFO [2014-03-08 06:15:30,132] [Preprocessor.java:241] [main] Processing chromosome scaffold41594 Processing chromosome scaffold41594 INFO [2014-03-08 06:15:30,152] [Preprocessor.java:241] [main] Processing chromosome scaffold41598 Processing chromosome scaffold41598 INFO [2014-03-08 06:15:30,242] [Preprocessor.java:241] [main] Processing chromosome scaffold416 Processing chromosome scaffold416 INFO [2014-03-08 06:15:30,297] [Preprocessor.java:241] [main] Processing chromosome scaffold41604 Processing chromosome scaffold41604 INFO [2014-03-08 06:15:30,316] [Preprocessor.java:241] [main] Processing chromosome scaffold41616 Processing chromosome scaffold41616 INFO [2014-03-08 06:15:30,352] [Preprocessor.java:241] [main] Processing chromosome scaffold41628 Processing chromosome scaffold41628 INFO [2014-03-08 06:15:30,390] [Preprocessor.java:241] [main] Processing chromosome scaffold41636 Processing chromosome scaffold41636 INFO [2014-03-08 06:15:30,403] [Preprocessor.java:241] [main] Processing chromosome scaffold41648 Processing chromosome scaffold41648 INFO [2014-03-08 06:15:30,414] [Preprocessor.java:241] [main] Processing chromosome scaffold41650 Processing chromosome scaffold41650 INFO [2014-03-08 06:15:30,504] [Preprocessor.java:241] [main] Processing chromosome scaffold41652 Processing chromosome scaffold41652 INFO [2014-03-08 06:15:30,621] [Preprocessor.java:241] [main] Processing chromosome scaffold41656 Processing chromosome scaffold41656 INFO [2014-03-08 06:15:30,654] [Preprocessor.java:241] [main] Processing chromosome scaffold41660 Processing chromosome scaffold41660 INFO [2014-03-08 06:15:30,706] [Preprocessor.java:241] [main] Processing chromosome scaffold41664 Processing chromosome scaffold41664 INFO [2014-03-08 06:15:30,738] [Preprocessor.java:241] [main] Processing chromosome scaffold41666 Processing chromosome scaffold41666 INFO [2014-03-08 06:15:30,790] [Preprocessor.java:241] [main] Processing chromosome scaffold41684 Processing chromosome scaffold41684 INFO [2014-03-08 06:15:30,819] [Preprocessor.java:241] [main] Processing chromosome scaffold417 Processing chromosome scaffold417 INFO [2014-03-08 06:15:30,834] [Preprocessor.java:241] [main] Processing chromosome scaffold41700 Processing chromosome scaffold41700 INFO [2014-03-08 06:15:30,857] [Preprocessor.java:241] [main] Processing chromosome scaffold41722 Processing chromosome scaffold41722 INFO [2014-03-08 06:15:30,910] [Preprocessor.java:241] [main] Processing chromosome scaffold41730 Processing chromosome scaffold41730 INFO [2014-03-08 06:15:30,977] [Preprocessor.java:241] [main] Processing chromosome scaffold41732 Processing chromosome scaffold41732 INFO [2014-03-08 06:15:31,052] [Preprocessor.java:241] [main] Processing chromosome scaffold41740 Processing chromosome scaffold41740 INFO [2014-03-08 06:15:31,087] [Preprocessor.java:241] [main] Processing chromosome scaffold41744 Processing chromosome scaffold41744 INFO [2014-03-08 06:15:31,118] [Preprocessor.java:241] [main] Processing chromosome scaffold41754 Processing chromosome scaffold41754 INFO [2014-03-08 06:15:31,139] [Preprocessor.java:241] [main] Processing chromosome scaffold41762 Processing chromosome scaffold41762 INFO [2014-03-08 06:15:31,154] [Preprocessor.java:241] [main] Processing chromosome scaffold41766 Processing chromosome scaffold41766 INFO [2014-03-08 06:15:31,183] [Preprocessor.java:241] [main] Processing chromosome scaffold41772 Processing chromosome scaffold41772 INFO [2014-03-08 06:15:31,212] [Preprocessor.java:241] [main] Processing chromosome scaffold41776 Processing chromosome scaffold41776 INFO [2014-03-08 06:15:31,227] [Preprocessor.java:241] [main] Processing chromosome scaffold41786 Processing chromosome scaffold41786 INFO [2014-03-08 06:15:31,251] [Preprocessor.java:241] [main] Processing chromosome scaffold41792 Processing chromosome scaffold41792 INFO [2014-03-08 06:15:31,280] [Preprocessor.java:241] [main] Processing chromosome scaffold41794 Processing chromosome scaffold41794 INFO [2014-03-08 06:15:31,298] [Preprocessor.java:241] [main] Processing chromosome scaffold41798 Processing chromosome scaffold41798 INFO [2014-03-08 06:15:31,318] [Preprocessor.java:241] [main] Processing chromosome scaffold418 Processing chromosome scaffold418 INFO [2014-03-08 06:15:31,384] [Preprocessor.java:241] [main] Processing chromosome scaffold41806 Processing chromosome scaffold41806 INFO [2014-03-08 06:15:31,427] [Preprocessor.java:241] [main] Processing chromosome scaffold41812 Processing chromosome scaffold41812 INFO [2014-03-08 06:15:31,500] [Preprocessor.java:241] [main] Processing chromosome scaffold41816 Processing chromosome scaffold41816 INFO [2014-03-08 06:15:31,534] [Preprocessor.java:241] [main] Processing chromosome scaffold41824 Processing chromosome scaffold41824 INFO [2014-03-08 06:15:31,593] [Preprocessor.java:241] [main] Processing chromosome scaffold41828 Processing chromosome scaffold41828 INFO [2014-03-08 06:15:31,666] [Preprocessor.java:241] [main] Processing chromosome scaffold41832 Processing chromosome scaffold41832 INFO [2014-03-08 06:15:31,740] [Preprocessor.java:241] [main] Processing chromosome scaffold41834 Processing chromosome scaffold41834 INFO [2014-03-08 06:15:31,766] [Preprocessor.java:241] [main] Processing chromosome scaffold41852 Processing chromosome scaffold41852 INFO [2014-03-08 06:15:31,806] [Preprocessor.java:241] [main] Processing chromosome scaffold41858 Processing chromosome scaffold41858 INFO [2014-03-08 06:15:31,887] [Preprocessor.java:241] [main] Processing chromosome scaffold41876 Processing chromosome scaffold41876 INFO [2014-03-08 06:15:31,952] [Preprocessor.java:241] [main] Processing chromosome scaffold41882 Processing chromosome scaffold41882 INFO [2014-03-08 06:15:31,964] [Preprocessor.java:241] [main] Processing chromosome scaffold41884 Processing chromosome scaffold41884 INFO [2014-03-08 06:15:32,001] [Preprocessor.java:241] [main] Processing chromosome scaffold41890 Processing chromosome scaffold41890 INFO [2014-03-08 06:15:32,059] [Preprocessor.java:241] [main] Processing chromosome scaffold41896 Processing chromosome scaffold41896 INFO [2014-03-08 06:15:32,129] [Preprocessor.java:241] [main] Processing chromosome scaffold41898 Processing chromosome scaffold41898 INFO [2014-03-08 06:15:32,167] [Preprocessor.java:241] [main] Processing chromosome scaffold419 Processing chromosome scaffold419 .INFO [2014-03-08 06:15:32,490] [Preprocessor.java:241] [main] Processing chromosome scaffold41900 Processing chromosome scaffold41900 INFO [2014-03-08 06:15:32,511] [Preprocessor.java:241] [main] Processing chromosome scaffold41902 Processing chromosome scaffold41902 INFO [2014-03-08 06:15:32,553] [Preprocessor.java:241] [main] Processing chromosome scaffold41928 Processing chromosome scaffold41928 INFO [2014-03-08 06:15:32,565] [Preprocessor.java:241] [main] Processing chromosome scaffold41948 Processing chromosome scaffold41948 INFO [2014-03-08 06:15:32,598] [Preprocessor.java:241] [main] Processing chromosome scaffold41954 Processing chromosome scaffold41954 INFO [2014-03-08 06:15:32,645] [Preprocessor.java:241] [main] Processing chromosome scaffold41968 Processing chromosome scaffold41968 INFO [2014-03-08 06:15:32,718] [Preprocessor.java:241] [main] Processing chromosome scaffold41970 Processing chromosome scaffold41970 INFO [2014-03-08 06:15:32,775] [Preprocessor.java:241] [main] Processing chromosome scaffold41972 Processing chromosome scaffold41972 INFO [2014-03-08 06:15:32,816] [Preprocessor.java:241] [main] Processing chromosome scaffold41974 Processing chromosome scaffold41974 INFO [2014-03-08 06:15:32,893] [Preprocessor.java:241] [main] Processing chromosome scaffold41982 Processing chromosome scaffold41982 INFO [2014-03-08 06:15:32,954] [Preprocessor.java:241] [main] Processing chromosome scaffold41988 Processing chromosome scaffold41988 INFO [2014-03-08 06:15:33,001] [Preprocessor.java:241] [main] Processing chromosome scaffold41994 Processing chromosome scaffold41994 INFO [2014-03-08 06:15:33,124] [Preprocessor.java:241] [main] Processing chromosome scaffold41998 Processing chromosome scaffold41998 INFO [2014-03-08 06:15:33,182] [Preprocessor.java:241] [main] Processing chromosome scaffold42 Processing chromosome scaffold42 INFO [2014-03-08 06:15:33,323] [Preprocessor.java:241] [main] Processing chromosome scaffold420 Processing chromosome scaffold420 INFO [2014-03-08 06:15:33,329] [Preprocessor.java:241] [main] Processing chromosome scaffold42022 Processing chromosome scaffold42022 INFO [2014-03-08 06:15:33,363] [Preprocessor.java:241] [main] Processing chromosome scaffold42030 Processing chromosome scaffold42030 INFO [2014-03-08 06:15:33,412] [Preprocessor.java:241] [main] Processing chromosome scaffold42032 Processing chromosome scaffold42032 INFO [2014-03-08 06:15:33,454] [Preprocessor.java:241] [main] Processing chromosome scaffold42040 Processing chromosome scaffold42040 INFO [2014-03-08 06:15:33,536] [Preprocessor.java:241] [main] Processing chromosome scaffold42046 Processing chromosome scaffold42046 INFO [2014-03-08 06:15:33,614] [Preprocessor.java:241] [main] Processing chromosome scaffold42048 Processing chromosome scaffold42048 INFO [2014-03-08 06:15:33,662] [Preprocessor.java:241] [main] Processing chromosome scaffold42060 Processing chromosome scaffold42060 INFO [2014-03-08 06:15:33,696] [Preprocessor.java:241] [main] Processing chromosome scaffold42062 Processing chromosome scaffold42062 INFO [2014-03-08 06:15:33,742] [Preprocessor.java:241] [main] Processing chromosome scaffold42070 Processing chromosome scaffold42070 INFO [2014-03-08 06:15:33,776] [Preprocessor.java:241] [main] Processing chromosome scaffold42076 Processing chromosome scaffold42076 INFO [2014-03-08 06:15:33,799] [Preprocessor.java:241] [main] Processing chromosome scaffold42086 Processing chromosome scaffold42086 INFO [2014-03-08 06:15:33,819] [Preprocessor.java:241] [main] Processing chromosome scaffold42090 Processing chromosome scaffold42090 INFO [2014-03-08 06:15:33,914] [Preprocessor.java:241] [main] Processing chromosome scaffold42096 Processing chromosome scaffold42096 INFO [2014-03-08 06:15:33,965] [Preprocessor.java:241] [main] Processing chromosome scaffold421 Processing chromosome scaffold421 INFO [2014-03-08 06:15:34,028] [Preprocessor.java:241] [main] Processing chromosome scaffold42112 Processing chromosome scaffold42112 INFO [2014-03-08 06:15:34,083] [Preprocessor.java:241] [main] Processing chromosome scaffold42124 Processing chromosome scaffold42124 INFO [2014-03-08 06:15:34,213] [Preprocessor.java:241] [main] Processing chromosome scaffold42128 Processing chromosome scaffold42128 INFO [2014-03-08 06:15:34,294] [Preprocessor.java:241] [main] Processing chromosome scaffold42130 Processing chromosome scaffold42130 INFO [2014-03-08 06:15:34,390] [Preprocessor.java:241] [main] Processing chromosome scaffold42144 Processing chromosome scaffold42144 INFO [2014-03-08 06:15:34,438] [Preprocessor.java:241] [main] Processing chromosome scaffold42158 Processing chromosome scaffold42158 INFO [2014-03-08 06:15:34,501] [Preprocessor.java:241] [main] Processing chromosome scaffold42164 Processing chromosome scaffold42164 INFO [2014-03-08 06:15:34,578] [Preprocessor.java:241] [main] Processing chromosome scaffold42166 Processing chromosome scaffold42166 INFO [2014-03-08 06:15:34,619] [Preprocessor.java:241] [main] Processing chromosome scaffold42172 Processing chromosome scaffold42172 INFO [2014-03-08 06:15:34,651] [Preprocessor.java:241] [main] Processing chromosome scaffold42184 Processing chromosome scaffold42184 INFO [2014-03-08 06:15:34,726] [Preprocessor.java:241] [main] Processing chromosome scaffold42190 Processing chromosome scaffold42190 INFO [2014-03-08 06:15:34,812] [Preprocessor.java:241] [main] Processing chromosome scaffold42198 Processing chromosome scaffold42198 INFO [2014-03-08 06:15:34,860] [Preprocessor.java:241] [main] Processing chromosome scaffold422 Processing chromosome scaffold422 INFO [2014-03-08 06:15:34,924] [Preprocessor.java:241] [main] Processing chromosome scaffold42208 Processing chromosome scaffold42208 INFO [2014-03-08 06:15:34,948] [Preprocessor.java:241] [main] Processing chromosome scaffold42210 Processing chromosome scaffold42210 INFO [2014-03-08 06:15:34,978] [Preprocessor.java:241] [main] Processing chromosome scaffold42214 Processing chromosome scaffold42214 INFO [2014-03-08 06:15:35,050] [Preprocessor.java:241] [main] Processing chromosome scaffold42226 Processing chromosome scaffold42226 INFO [2014-03-08 06:15:35,112] [Preprocessor.java:241] [main] Processing chromosome scaffold42236 Processing chromosome scaffold42236 INFO [2014-03-08 06:15:35,190] [Preprocessor.java:241] [main] Processing chromosome scaffold42246 Processing chromosome scaffold42246 INFO [2014-03-08 06:15:35,272] [Preprocessor.java:241] [main] Processing chromosome scaffold42252 Processing chromosome scaffold42252 INFO [2014-03-08 06:15:35,315] [Preprocessor.java:241] [main] Processing chromosome scaffold42262 Processing chromosome scaffold42262 INFO [2014-03-08 06:15:35,402] [Preprocessor.java:241] [main] Processing chromosome scaffold42264 Processing chromosome scaffold42264 INFO [2014-03-08 06:15:35,427] [Preprocessor.java:241] [main] Processing chromosome scaffold42268 Processing chromosome scaffold42268 INFO [2014-03-08 06:15:35,465] [Preprocessor.java:241] [main] Processing chromosome scaffold42272 Processing chromosome scaffold42272 INFO [2014-03-08 06:15:35,543] [Preprocessor.java:241] [main] Processing chromosome scaffold42274 Processing chromosome scaffold42274 INFO [2014-03-08 06:15:35,580] [Preprocessor.java:241] [main] Processing chromosome scaffold423 Processing chromosome scaffold423 INFO [2014-03-08 06:15:35,588] [Preprocessor.java:241] [main] Processing chromosome scaffold42302 Processing chromosome scaffold42302 INFO [2014-03-08 06:15:35,662] [Preprocessor.java:241] [main] Processing chromosome scaffold42306 Processing chromosome scaffold42306 INFO [2014-03-08 06:15:35,693] [Preprocessor.java:241] [main] Processing chromosome scaffold42326 Processing chromosome scaffold42326 INFO [2014-03-08 06:15:35,720] [Preprocessor.java:241] [main] Processing chromosome scaffold42328 Processing chromosome scaffold42328 INFO [2014-03-08 06:15:35,793] [Preprocessor.java:241] [main] Processing chromosome scaffold42348 Processing chromosome scaffold42348 INFO [2014-03-08 06:15:35,833] [Preprocessor.java:241] [main] Processing chromosome scaffold42364 Processing chromosome scaffold42364 INFO [2014-03-08 06:15:35,892] [Preprocessor.java:241] [main] Processing chromosome scaffold42366 Processing chromosome scaffold42366 INFO [2014-03-08 06:15:35,941] [Preprocessor.java:241] [main] Processing chromosome scaffold42372 Processing chromosome scaffold42372 INFO [2014-03-08 06:15:35,961] [Preprocessor.java:241] [main] Processing chromosome scaffold42380 Processing chromosome scaffold42380 INFO [2014-03-08 06:15:36,000] [Preprocessor.java:241] [main] Processing chromosome scaffold42390 Processing chromosome scaffold42390 INFO [2014-03-08 06:15:36,042] [Preprocessor.java:241] [main] Processing chromosome scaffold42392 Processing chromosome scaffold42392 INFO [2014-03-08 06:15:36,065] [Preprocessor.java:241] [main] Processing chromosome scaffold424 Processing chromosome scaffold424 INFO [2014-03-08 06:15:36,120] [Preprocessor.java:241] [main] Processing chromosome scaffold42402 Processing chromosome scaffold42402 INFO [2014-03-08 06:15:36,208] [Preprocessor.java:241] [main] Processing chromosome scaffold42408 Processing chromosome scaffold42408 INFO [2014-03-08 06:15:36,253] [Preprocessor.java:241] [main] Processing chromosome scaffold42422 Processing chromosome scaffold42422 INFO [2014-03-08 06:15:36,356] [Preprocessor.java:241] [main] Processing chromosome scaffold42440 Processing chromosome scaffold42440 INFO [2014-03-08 06:15:36,383] [Preprocessor.java:241] [main] Processing chromosome scaffold42446 Processing chromosome scaffold42446 INFO [2014-03-08 06:15:36,441] [Preprocessor.java:241] [main] Processing chromosome scaffold42448 Processing chromosome scaffold42448 INFO [2014-03-08 06:15:36,505] [Preprocessor.java:241] [main] Processing chromosome scaffold42450 Processing chromosome scaffold42450 INFO [2014-03-08 06:15:36,580] [Preprocessor.java:241] [main] Processing chromosome scaffold42466 Processing chromosome scaffold42466 .INFO [2014-03-08 06:15:36,675] [Preprocessor.java:241] [main] Processing chromosome scaffold42486 Processing chromosome scaffold42486 INFO [2014-03-08 06:15:36,851] [Preprocessor.java:241] [main] Processing chromosome scaffold42490 Processing chromosome scaffold42490 INFO [2014-03-08 06:15:36,898] [Preprocessor.java:241] [main] Processing chromosome scaffold425 Processing chromosome scaffold425 INFO [2014-03-08 06:15:37,066] [Preprocessor.java:241] [main] Processing chromosome scaffold42508 Processing chromosome scaffold42508 INFO [2014-03-08 06:15:37,133] [Preprocessor.java:241] [main] Processing chromosome scaffold42516 Processing chromosome scaffold42516 INFO [2014-03-08 06:15:37,199] [Preprocessor.java:241] [main] Processing chromosome scaffold42518 Processing chromosome scaffold42518 INFO [2014-03-08 06:15:37,314] [Preprocessor.java:241] [main] Processing chromosome scaffold42524 Processing chromosome scaffold42524 INFO [2014-03-08 06:15:37,370] [Preprocessor.java:241] [main] Processing chromosome scaffold42528 Processing chromosome scaffold42528 INFO [2014-03-08 06:15:37,453] [Preprocessor.java:241] [main] Processing chromosome scaffold42530 Processing chromosome scaffold42530 INFO [2014-03-08 06:15:37,528] [Preprocessor.java:241] [main] Processing chromosome scaffold42540 Processing chromosome scaffold42540 INFO [2014-03-08 06:15:37,626] [Preprocessor.java:241] [main] Processing chromosome scaffold42556 Processing chromosome scaffold42556 INFO [2014-03-08 06:15:37,688] [Preprocessor.java:241] [main] Processing chromosome scaffold42558 Processing chromosome scaffold42558 INFO [2014-03-08 06:15:37,754] [Preprocessor.java:241] [main] Processing chromosome scaffold42566 Processing chromosome scaffold42566 INFO [2014-03-08 06:15:37,772] [Preprocessor.java:241] [main] Processing chromosome scaffold42568 Processing chromosome scaffold42568 INFO [2014-03-08 06:15:37,832] [Preprocessor.java:241] [main] Processing chromosome scaffold42570 Processing chromosome scaffold42570 INFO [2014-03-08 06:15:37,878] [Preprocessor.java:241] [main] Processing chromosome scaffold42584 Processing chromosome scaffold42584 INFO [2014-03-08 06:15:37,919] [Preprocessor.java:241] [main] Processing chromosome scaffold42592 Processing chromosome scaffold42592 INFO [2014-03-08 06:15:37,970] [Preprocessor.java:241] [main] Processing chromosome scaffold42596 Processing chromosome scaffold42596 INFO [2014-03-08 06:15:38,009] [Preprocessor.java:241] [main] Processing chromosome scaffold42598 Processing chromosome scaffold42598 INFO [2014-03-08 06:15:38,047] [Preprocessor.java:241] [main] Processing chromosome scaffold426 Processing chromosome scaffold426 INFO [2014-03-08 06:15:38,074] [Preprocessor.java:241] [main] Processing chromosome scaffold42604 Processing chromosome scaffold42604 INFO [2014-03-08 06:15:38,109] [Preprocessor.java:241] [main] Processing chromosome scaffold42618 Processing chromosome scaffold42618 INFO [2014-03-08 06:15:38,138] [Preprocessor.java:241] [main] Processing chromosome scaffold42634 Processing chromosome scaffold42634 INFO [2014-03-08 06:15:38,194] [Preprocessor.java:241] [main] Processing chromosome scaffold42640 Processing chromosome scaffold42640 INFO [2014-03-08 06:15:38,222] [Preprocessor.java:241] [main] Processing chromosome scaffold42648 Processing chromosome scaffold42648 INFO [2014-03-08 06:15:38,278] [Preprocessor.java:241] [main] Processing chromosome scaffold42656 Processing chromosome scaffold42656 INFO [2014-03-08 06:15:38,315] [Preprocessor.java:241] [main] Processing chromosome scaffold42662 Processing chromosome scaffold42662 INFO [2014-03-08 06:15:38,403] [Preprocessor.java:241] [main] Processing chromosome scaffold42674 Processing chromosome scaffold42674 INFO [2014-03-08 06:15:38,450] [Preprocessor.java:241] [main] Processing chromosome scaffold42684 Processing chromosome scaffold42684 INFO [2014-03-08 06:15:38,536] [Preprocessor.java:241] [main] Processing chromosome scaffold427 Processing chromosome scaffold427 INFO [2014-03-08 06:15:38,582] [Preprocessor.java:241] [main] Processing chromosome scaffold42704 Processing chromosome scaffold42704 INFO [2014-03-08 06:15:38,600] [Preprocessor.java:241] [main] Processing chromosome scaffold42726 Processing chromosome scaffold42726 INFO [2014-03-08 06:15:38,648] [Preprocessor.java:241] [main] Processing chromosome scaffold42740 Processing chromosome scaffold42740 INFO [2014-03-08 06:15:38,691] [Preprocessor.java:241] [main] Processing chromosome scaffold42754 Processing chromosome scaffold42754 INFO [2014-03-08 06:15:38,749] [Preprocessor.java:241] [main] Processing chromosome scaffold42760 Processing chromosome scaffold42760 INFO [2014-03-08 06:15:38,814] [Preprocessor.java:241] [main] Processing chromosome scaffold42762 Processing chromosome scaffold42762 INFO [2014-03-08 06:15:38,834] [Preprocessor.java:241] [main] Processing chromosome scaffold42766 Processing chromosome scaffold42766 INFO [2014-03-08 06:15:38,885] [Preprocessor.java:241] [main] Processing chromosome scaffold42770 Processing chromosome scaffold42770 INFO [2014-03-08 06:15:38,917] [Preprocessor.java:241] [main] Processing chromosome scaffold42776 Processing chromosome scaffold42776 INFO [2014-03-08 06:15:38,994] [Preprocessor.java:241] [main] Processing chromosome scaffold42784 Processing chromosome scaffold42784 INFO [2014-03-08 06:15:39,071] [Preprocessor.java:241] [main] Processing chromosome scaffold42788 Processing chromosome scaffold42788 INFO [2014-03-08 06:15:39,112] [Preprocessor.java:241] [main] Processing chromosome scaffold42790 Processing chromosome scaffold42790 INFO [2014-03-08 06:15:39,139] [Preprocessor.java:241] [main] Processing chromosome scaffold42794 Processing chromosome scaffold42794 INFO [2014-03-08 06:15:39,200] [Preprocessor.java:241] [main] Processing chromosome scaffold42804 Processing chromosome scaffold42804 INFO [2014-03-08 06:15:39,218] [Preprocessor.java:241] [main] Processing chromosome scaffold42836 Processing chromosome scaffold42836 INFO [2014-03-08 06:15:39,288] [Preprocessor.java:241] [main] Processing chromosome scaffold42840 Processing chromosome scaffold42840 INFO [2014-03-08 06:15:39,351] [Preprocessor.java:241] [main] Processing chromosome scaffold42850 Processing chromosome scaffold42850 INFO [2014-03-08 06:15:39,500] [Preprocessor.java:241] [main] Processing chromosome scaffold42866 Processing chromosome scaffold42866 INFO [2014-03-08 06:15:39,532] [Preprocessor.java:241] [main] Processing chromosome scaffold42880 Processing chromosome scaffold42880 INFO [2014-03-08 06:15:39,550] [Preprocessor.java:241] [main] Processing chromosome scaffold42890 Processing chromosome scaffold42890 INFO [2014-03-08 06:15:39,595] [Preprocessor.java:241] [main] Processing chromosome scaffold42892 Processing chromosome scaffold42892 INFO [2014-03-08 06:15:39,654] [Preprocessor.java:241] [main] Processing chromosome scaffold42894 Processing chromosome scaffold42894 INFO [2014-03-08 06:15:39,710] [Preprocessor.java:241] [main] Processing chromosome scaffold42896 Processing chromosome scaffold42896 INFO [2014-03-08 06:15:39,731] [Preprocessor.java:241] [main] Processing chromosome scaffold429 Processing chromosome scaffold429 INFO [2014-03-08 06:15:39,758] [Preprocessor.java:241] [main] Processing chromosome scaffold42904 Processing chromosome scaffold42904 INFO [2014-03-08 06:15:39,841] [Preprocessor.java:241] [main] Processing chromosome scaffold42918 Processing chromosome scaffold42918 INFO [2014-03-08 06:15:39,880] [Preprocessor.java:241] [main] Processing chromosome scaffold42922 Processing chromosome scaffold42922 INFO [2014-03-08 06:15:39,945] [Preprocessor.java:241] [main] Processing chromosome scaffold42924 Processing chromosome scaffold42924 INFO [2014-03-08 06:15:39,986] [Preprocessor.java:241] [main] Processing chromosome scaffold42930 Processing chromosome scaffold42930 INFO [2014-03-08 06:15:40,022] [Preprocessor.java:241] [main] Processing chromosome scaffold42946 Processing chromosome scaffold42946 INFO [2014-03-08 06:15:40,082] [Preprocessor.java:241] [main] Processing chromosome scaffold42948 Processing chromosome scaffold42948 INFO [2014-03-08 06:15:40,141] [Preprocessor.java:241] [main] Processing chromosome scaffold42960 Processing chromosome scaffold42960 INFO [2014-03-08 06:15:40,174] [Preprocessor.java:241] [main] Processing chromosome scaffold42974 Processing chromosome scaffold42974 INFO [2014-03-08 06:15:40,249] [Preprocessor.java:241] [main] Processing chromosome scaffold42990 Processing chromosome scaffold42990 INFO [2014-03-08 06:15:40,315] [Preprocessor.java:241] [main] Processing chromosome scaffold42994 Processing chromosome scaffold42994 INFO [2014-03-08 06:15:40,382] [Preprocessor.java:241] [main] Processing chromosome scaffold43 Processing chromosome scaffold43 INFO [2014-03-08 06:15:40,486] [Preprocessor.java:241] [main] Processing chromosome scaffold43008 Processing chromosome scaffold43008 INFO [2014-03-08 06:15:40,525] [Preprocessor.java:241] [main] Processing chromosome scaffold43012 Processing chromosome scaffold43012 .INFO [2014-03-08 06:15:40,622] [Preprocessor.java:241] [main] Processing chromosome scaffold43024 Processing chromosome scaffold43024 INFO [2014-03-08 06:15:40,695] [Preprocessor.java:241] [main] Processing chromosome scaffold43026 Processing chromosome scaffold43026 INFO [2014-03-08 06:15:40,719] [Preprocessor.java:241] [main] Processing chromosome scaffold43028 Processing chromosome scaffold43028 INFO [2014-03-08 06:15:40,806] [Preprocessor.java:241] [main] Processing chromosome scaffold43034 Processing chromosome scaffold43034 INFO [2014-03-08 06:15:40,902] [Preprocessor.java:241] [main] Processing chromosome scaffold43036 Processing chromosome scaffold43036 INFO [2014-03-08 06:15:40,946] [Preprocessor.java:241] [main] Processing chromosome scaffold43038 Processing chromosome scaffold43038 INFO [2014-03-08 06:15:41,023] [Preprocessor.java:241] [main] Processing chromosome scaffold43054 Processing chromosome scaffold43054 INFO [2014-03-08 06:15:41,066] [Preprocessor.java:241] [main] Processing chromosome scaffold43064 Processing chromosome scaffold43064 INFO [2014-03-08 06:15:41,109] [Preprocessor.java:241] [main] Processing chromosome scaffold43066 Processing chromosome scaffold43066 INFO [2014-03-08 06:15:41,156] [Preprocessor.java:241] [main] Processing chromosome scaffold43072 Processing chromosome scaffold43072 INFO [2014-03-08 06:15:41,262] [Preprocessor.java:241] [main] Processing chromosome scaffold43074 Processing chromosome scaffold43074 INFO [2014-03-08 06:15:41,306] [Preprocessor.java:241] [main] Processing chromosome scaffold43076 Processing chromosome scaffold43076 INFO [2014-03-08 06:15:41,343] [Preprocessor.java:241] [main] Processing chromosome scaffold43084 Processing chromosome scaffold43084 INFO [2014-03-08 06:15:41,445] [Preprocessor.java:241] [main] Processing chromosome scaffold43108 Processing chromosome scaffold43108 INFO [2014-03-08 06:15:41,497] [Preprocessor.java:241] [main] Processing chromosome scaffold43116 Processing chromosome scaffold43116 INFO [2014-03-08 06:15:41,588] [Preprocessor.java:241] [main] Processing chromosome scaffold43122 Processing chromosome scaffold43122 INFO [2014-03-08 06:15:41,668] [Preprocessor.java:241] [main] Processing chromosome scaffold43130 Processing chromosome scaffold43130 INFO [2014-03-08 06:15:41,778] [Preprocessor.java:241] [main] Processing chromosome scaffold43134 Processing chromosome scaffold43134 INFO [2014-03-08 06:15:41,865] [Preprocessor.java:241] [main] Processing chromosome scaffold43136 Processing chromosome scaffold43136 INFO [2014-03-08 06:15:41,894] [Preprocessor.java:241] [main] Processing chromosome scaffold43146 Processing chromosome scaffold43146 INFO [2014-03-08 06:15:41,921] [Preprocessor.java:241] [main] Processing chromosome scaffold43150 Processing chromosome scaffold43150 INFO [2014-03-08 06:15:42,005] [Preprocessor.java:241] [main] Processing chromosome scaffold43170 Processing chromosome scaffold43170 INFO [2014-03-08 06:15:42,080] [Preprocessor.java:241] [main] Processing chromosome scaffold43182 Processing chromosome scaffold43182 INFO [2014-03-08 06:15:42,105] [Preprocessor.java:241] [main] Processing chromosome scaffold43184 Processing chromosome scaffold43184 INFO [2014-03-08 06:15:42,166] [Preprocessor.java:241] [main] Processing chromosome scaffold43194 Processing chromosome scaffold43194 INFO [2014-03-08 06:15:42,216] [Preprocessor.java:241] [main] Processing chromosome scaffold432 Processing chromosome scaffold432 INFO [2014-03-08 06:15:42,438] [Preprocessor.java:241] [main] Processing chromosome scaffold43200 Processing chromosome scaffold43200 INFO [2014-03-08 06:15:42,463] [Preprocessor.java:241] [main] Processing chromosome scaffold43206 Processing chromosome scaffold43206 INFO [2014-03-08 06:15:42,542] [Preprocessor.java:241] [main] Processing chromosome scaffold43208 Processing chromosome scaffold43208 INFO [2014-03-08 06:15:42,601] [Preprocessor.java:241] [main] Processing chromosome scaffold43210 Processing chromosome scaffold43210 INFO [2014-03-08 06:15:42,634] [Preprocessor.java:241] [main] Processing chromosome scaffold43240 Processing chromosome scaffold43240 INFO [2014-03-08 06:15:42,685] [Preprocessor.java:241] [main] Processing chromosome scaffold43242 Processing chromosome scaffold43242 INFO [2014-03-08 06:15:42,729] [Preprocessor.java:241] [main] Processing chromosome scaffold43244 Processing chromosome scaffold43244 INFO [2014-03-08 06:15:42,784] [Preprocessor.java:241] [main] Processing chromosome scaffold43258 Processing chromosome scaffold43258 INFO [2014-03-08 06:15:42,833] [Preprocessor.java:241] [main] Processing chromosome scaffold43272 Processing chromosome scaffold43272 INFO [2014-03-08 06:15:42,875] [Preprocessor.java:241] [main] Processing chromosome scaffold43278 Processing chromosome scaffold43278 INFO [2014-03-08 06:15:42,937] [Preprocessor.java:241] [main] Processing chromosome scaffold43280 Processing chromosome scaffold43280 INFO [2014-03-08 06:15:42,973] [Preprocessor.java:241] [main] Processing chromosome scaffold43290 Processing chromosome scaffold43290 INFO [2014-03-08 06:15:43,060] [Preprocessor.java:241] [main] Processing chromosome scaffold43296 Processing chromosome scaffold43296 INFO [2014-03-08 06:15:43,102] [Preprocessor.java:241] [main] Processing chromosome scaffold433 Processing chromosome scaffold433 INFO [2014-03-08 06:15:43,351] [Preprocessor.java:241] [main] Processing chromosome scaffold43302 Processing chromosome scaffold43302 INFO [2014-03-08 06:15:43,418] [Preprocessor.java:241] [main] Processing chromosome scaffold43314 Processing chromosome scaffold43314 INFO [2014-03-08 06:15:43,460] [Preprocessor.java:241] [main] Processing chromosome scaffold43340 Processing chromosome scaffold43340 INFO [2014-03-08 06:15:43,537] [Preprocessor.java:241] [main] Processing chromosome scaffold43344 Processing chromosome scaffold43344 INFO [2014-03-08 06:15:43,615] [Preprocessor.java:241] [main] Processing chromosome scaffold43358 Processing chromosome scaffold43358 INFO [2014-03-08 06:15:43,706] [Preprocessor.java:241] [main] Processing chromosome scaffold43364 Processing chromosome scaffold43364 INFO [2014-03-08 06:15:43,759] [Preprocessor.java:241] [main] Processing chromosome scaffold43366 Processing chromosome scaffold43366 INFO [2014-03-08 06:15:43,816] [Preprocessor.java:241] [main] Processing chromosome scaffold43388 Processing chromosome scaffold43388 INFO [2014-03-08 06:15:43,840] [Preprocessor.java:241] [main] Processing chromosome scaffold43396 Processing chromosome scaffold43396 INFO [2014-03-08 06:15:43,917] [Preprocessor.java:241] [main] Processing chromosome scaffold43406 Processing chromosome scaffold43406 .INFO [2014-03-08 06:15:43,979] [Preprocessor.java:241] [main] Processing chromosome scaffold43426 Processing chromosome scaffold43426 INFO [2014-03-08 06:15:44,049] [Preprocessor.java:241] [main] Processing chromosome scaffold43442 Processing chromosome scaffold43442 INFO [2014-03-08 06:15:44,093] [Preprocessor.java:241] [main] Processing chromosome scaffold43446 Processing chromosome scaffold43446 INFO [2014-03-08 06:15:44,145] [Preprocessor.java:241] [main] Processing chromosome scaffold43452 Processing chromosome scaffold43452 INFO [2014-03-08 06:15:44,236] [Preprocessor.java:241] [main] Processing chromosome scaffold43494 Processing chromosome scaffold43494 INFO [2014-03-08 06:15:44,277] [Preprocessor.java:241] [main] Processing chromosome scaffold435 Processing chromosome scaffold435 INFO [2014-03-08 06:15:44,289] [Preprocessor.java:241] [main] Processing chromosome scaffold43500 Processing chromosome scaffold43500 INFO [2014-03-08 06:15:44,354] [Preprocessor.java:241] [main] Processing chromosome scaffold43520 Processing chromosome scaffold43520 INFO [2014-03-08 06:15:44,466] [Preprocessor.java:241] [main] Processing chromosome scaffold43522 Processing chromosome scaffold43522 INFO [2014-03-08 06:15:44,531] [Preprocessor.java:241] [main] Processing chromosome scaffold43526 Processing chromosome scaffold43526 INFO [2014-03-08 06:15:44,609] [Preprocessor.java:241] [main] Processing chromosome scaffold43530 Processing chromosome scaffold43530 INFO [2014-03-08 06:15:44,654] [Preprocessor.java:241] [main] Processing chromosome scaffold43536 Processing chromosome scaffold43536 INFO [2014-03-08 06:15:44,777] [Preprocessor.java:241] [main] Processing chromosome scaffold43538 Processing chromosome scaffold43538 INFO [2014-03-08 06:15:44,848] [Preprocessor.java:241] [main] Processing chromosome scaffold43552 Processing chromosome scaffold43552 INFO [2014-03-08 06:15:44,874] [Preprocessor.java:241] [main] Processing chromosome scaffold43562 Processing chromosome scaffold43562 INFO [2014-03-08 06:15:44,989] [Preprocessor.java:241] [main] Processing chromosome scaffold43574 Processing chromosome scaffold43574 INFO [2014-03-08 06:15:45,112] [Preprocessor.java:241] [main] Processing chromosome scaffold43576 Processing chromosome scaffold43576 INFO [2014-03-08 06:15:45,189] [Preprocessor.java:241] [main] Processing chromosome scaffold43598 Processing chromosome scaffold43598 INFO [2014-03-08 06:15:45,244] [Preprocessor.java:241] [main] Processing chromosome scaffold436 Processing chromosome scaffold436 INFO [2014-03-08 06:15:45,252] [Preprocessor.java:241] [main] Processing chromosome scaffold43608 Processing chromosome scaffold43608 INFO [2014-03-08 06:15:45,304] [Preprocessor.java:241] [main] Processing chromosome scaffold43616 Processing chromosome scaffold43616 INFO [2014-03-08 06:15:45,387] [Preprocessor.java:241] [main] Processing chromosome scaffold43624 Processing chromosome scaffold43624 INFO [2014-03-08 06:15:45,426] [Preprocessor.java:241] [main] Processing chromosome scaffold43630 Processing chromosome scaffold43630 INFO [2014-03-08 06:15:45,503] [Preprocessor.java:241] [main] Processing chromosome scaffold43634 Processing chromosome scaffold43634 INFO [2014-03-08 06:15:45,532] [Preprocessor.java:241] [main] Processing chromosome scaffold43648 Processing chromosome scaffold43648 INFO [2014-03-08 06:15:45,591] [Preprocessor.java:241] [main] Processing chromosome scaffold43660 Processing chromosome scaffold43660 INFO [2014-03-08 06:15:45,642] [Preprocessor.java:241] [main] Processing chromosome scaffold43662 Processing chromosome scaffold43662 INFO [2014-03-08 06:15:45,667] [Preprocessor.java:241] [main] Processing chromosome scaffold43664 Processing chromosome scaffold43664 INFO [2014-03-08 06:15:45,757] [Preprocessor.java:241] [main] Processing chromosome scaffold43676 Processing chromosome scaffold43676 INFO [2014-03-08 06:15:45,815] [Preprocessor.java:241] [main] Processing chromosome scaffold43680 Processing chromosome scaffold43680 INFO [2014-03-08 06:15:45,871] [Preprocessor.java:241] [main] Processing chromosome scaffold43686 Processing chromosome scaffold43686 INFO [2014-03-08 06:15:45,922] [Preprocessor.java:241] [main] Processing chromosome scaffold43692 Processing chromosome scaffold43692 INFO [2014-03-08 06:15:46,012] [Preprocessor.java:241] [main] Processing chromosome scaffold43696 Processing chromosome scaffold43696 INFO [2014-03-08 06:15:46,079] [Preprocessor.java:241] [main] Processing chromosome scaffold43702 Processing chromosome scaffold43702 INFO [2014-03-08 06:15:46,153] [Preprocessor.java:241] [main] Processing chromosome scaffold43708 Processing chromosome scaffold43708 INFO [2014-03-08 06:15:46,255] [Preprocessor.java:241] [main] Processing chromosome scaffold43726 Processing chromosome scaffold43726 INFO [2014-03-08 06:15:46,322] [Preprocessor.java:241] [main] Processing chromosome scaffold43742 Processing chromosome scaffold43742 INFO [2014-03-08 06:15:46,443] [Preprocessor.java:241] [main] Processing chromosome scaffold43764 Processing chromosome scaffold43764 INFO [2014-03-08 06:15:46,521] [Preprocessor.java:241] [main] Processing chromosome scaffold43772 Processing chromosome scaffold43772 INFO [2014-03-08 06:15:46,575] [Preprocessor.java:241] [main] Processing chromosome scaffold43782 Processing chromosome scaffold43782 INFO [2014-03-08 06:15:46,661] [Preprocessor.java:241] [main] Processing chromosome scaffold43786 Processing chromosome scaffold43786 INFO [2014-03-08 06:15:46,759] [Preprocessor.java:241] [main] Processing chromosome scaffold43794 Processing chromosome scaffold43794 INFO [2014-03-08 06:15:46,806] [Preprocessor.java:241] [main] Processing chromosome scaffold43798 Processing chromosome scaffold43798 INFO [2014-03-08 06:15:46,862] [Preprocessor.java:241] [main] Processing chromosome scaffold43804 Processing chromosome scaffold43804 INFO [2014-03-08 06:15:46,936] [Preprocessor.java:241] [main] Processing chromosome scaffold43818 Processing chromosome scaffold43818 INFO [2014-03-08 06:15:47,025] [Preprocessor.java:241] [main] Processing chromosome scaffold43836 Processing chromosome scaffold43836 INFO [2014-03-08 06:15:47,098] [Preprocessor.java:241] [main] Processing chromosome scaffold43842 Processing chromosome scaffold43842 INFO [2014-03-08 06:15:47,213] [Preprocessor.java:241] [main] Processing chromosome scaffold43844 Processing chromosome scaffold43844 INFO [2014-03-08 06:15:47,262] [Preprocessor.java:241] [main] Processing chromosome scaffold43868 Processing chromosome scaffold43868 INFO [2014-03-08 06:15:47,368] [Preprocessor.java:241] [main] Processing chromosome scaffold43878 Processing chromosome scaffold43878 .INFO [2014-03-08 06:15:47,425] [Preprocessor.java:241] [main] Processing chromosome scaffold43894 Processing chromosome scaffold43894 INFO [2014-03-08 06:15:47,515] [Preprocessor.java:241] [main] Processing chromosome scaffold439 Processing chromosome scaffold439 INFO [2014-03-08 06:15:47,536] [Preprocessor.java:241] [main] Processing chromosome scaffold43920 Processing chromosome scaffold43920 INFO [2014-03-08 06:15:47,623] [Preprocessor.java:241] [main] Processing chromosome scaffold43932 Processing chromosome scaffold43932 INFO [2014-03-08 06:15:47,748] [Preprocessor.java:241] [main] Processing chromosome scaffold43940 Processing chromosome scaffold43940 INFO [2014-03-08 06:15:47,896] [Preprocessor.java:241] [main] Processing chromosome scaffold43954 Processing chromosome scaffold43954 INFO [2014-03-08 06:15:48,012] [Preprocessor.java:241] [main] Processing chromosome scaffold43956 Processing chromosome scaffold43956 INFO [2014-03-08 06:15:48,156] [Preprocessor.java:241] [main] Processing chromosome scaffold43964 Processing chromosome scaffold43964 INFO [2014-03-08 06:15:48,320] [Preprocessor.java:241] [main] Processing chromosome scaffold43986 Processing chromosome scaffold43986 INFO [2014-03-08 06:15:48,427] [Preprocessor.java:241] [main] Processing chromosome scaffold43988 Processing chromosome scaffold43988 INFO [2014-03-08 06:15:48,511] [Preprocessor.java:241] [main] Processing chromosome scaffold44 Processing chromosome scaffold44 INFO [2014-03-08 06:15:48,615] [Preprocessor.java:241] [main] Processing chromosome scaffold440 Processing chromosome scaffold440 INFO [2014-03-08 06:15:48,652] [Preprocessor.java:241] [main] Processing chromosome scaffold44006 Processing chromosome scaffold44006 INFO [2014-03-08 06:15:48,746] [Preprocessor.java:241] [main] Processing chromosome scaffold44008 Processing chromosome scaffold44008 INFO [2014-03-08 06:15:48,828] [Preprocessor.java:241] [main] Processing chromosome scaffold44054 Processing chromosome scaffold44054 INFO [2014-03-08 06:15:48,944] [Preprocessor.java:241] [main] Processing chromosome scaffold44064 Processing chromosome scaffold44064 INFO [2014-03-08 06:15:49,074] [Preprocessor.java:241] [main] Processing chromosome scaffold44098 Processing chromosome scaffold44098 INFO [2014-03-08 06:15:49,221] [Preprocessor.java:241] [main] Processing chromosome scaffold441 Processing chromosome scaffold441 INFO [2014-03-08 06:15:49,229] [Preprocessor.java:241] [main] Processing chromosome scaffold442 Processing chromosome scaffold442 INFO [2014-03-08 06:15:49,246] [Preprocessor.java:241] [main] Processing chromosome scaffold443 Processing chromosome scaffold443 INFO [2014-03-08 06:15:49,355] [Preprocessor.java:241] [main] Processing chromosome scaffold444 Processing chromosome scaffold444 INFO [2014-03-08 06:15:49,399] [Preprocessor.java:241] [main] Processing chromosome scaffold445 Processing chromosome scaffold445 INFO [2014-03-08 06:15:49,521] [Preprocessor.java:241] [main] Processing chromosome scaffold446 Processing chromosome scaffold446 INFO [2014-03-08 06:15:49,538] [Preprocessor.java:241] [main] Processing chromosome scaffold447 Processing chromosome scaffold447 INFO [2014-03-08 06:15:49,609] [Preprocessor.java:241] [main] Processing chromosome scaffold448 Processing chromosome scaffold448 INFO [2014-03-08 06:15:49,744] [Preprocessor.java:241] [main] Processing chromosome scaffold449 Processing chromosome scaffold449 INFO [2014-03-08 06:15:49,800] [Preprocessor.java:241] [main] Processing chromosome scaffold450 Processing chromosome scaffold450 INFO [2014-03-08 06:15:49,825] [Preprocessor.java:241] [main] Processing chromosome scaffold451 Processing chromosome scaffold451 INFO [2014-03-08 06:15:49,837] [Preprocessor.java:241] [main] Processing chromosome scaffold452 Processing chromosome scaffold452 INFO [2014-03-08 06:15:49,890] [Preprocessor.java:241] [main] Processing chromosome scaffold453 Processing chromosome scaffold453 INFO [2014-03-08 06:15:49,936] [Preprocessor.java:241] [main] Processing chromosome scaffold454 Processing chromosome scaffold454 INFO [2014-03-08 06:15:49,991] [Preprocessor.java:241] [main] Processing chromosome scaffold455 Processing chromosome scaffold455 INFO [2014-03-08 06:15:50,019] [Preprocessor.java:241] [main] Processing chromosome scaffold456 Processing chromosome scaffold456 INFO [2014-03-08 06:15:50,053] [Preprocessor.java:241] [main] Processing chromosome scaffold457 Processing chromosome scaffold457 INFO [2014-03-08 06:15:50,095] [Preprocessor.java:241] [main] Processing chromosome scaffold458 Processing chromosome scaffold458 INFO [2014-03-08 06:15:50,187] [Preprocessor.java:241] [main] Processing chromosome scaffold459 Processing chromosome scaffold459 INFO [2014-03-08 06:15:50,267] [Preprocessor.java:241] [main] Processing chromosome scaffold46 Processing chromosome scaffold46 INFO [2014-03-08 06:15:50,282] [Preprocessor.java:241] [main] Processing chromosome scaffold461 Processing chromosome scaffold461 INFO [2014-03-08 06:15:50,329] [Preprocessor.java:241] [main] Processing chromosome scaffold462 Processing chromosome scaffold462 INFO [2014-03-08 06:15:50,336] [Preprocessor.java:241] [main] Processing chromosome scaffold463 Processing chromosome scaffold463 INFO [2014-03-08 06:15:50,371] [Preprocessor.java:241] [main] Processing chromosome scaffold464 Processing chromosome scaffold464 INFO [2014-03-08 06:15:50,430] [Preprocessor.java:241] [main] Processing chromosome scaffold465 Processing chromosome scaffold465 INFO [2014-03-08 06:15:50,449] [Preprocessor.java:241] [main] Processing chromosome scaffold466 Processing chromosome scaffold466 INFO [2014-03-08 06:15:50,473] [Preprocessor.java:241] [main] Processing chromosome scaffold467 Processing chromosome scaffold467 .INFO [2014-03-08 06:15:50,504] [Preprocessor.java:241] [main] Processing chromosome scaffold469 Processing chromosome scaffold469 INFO [2014-03-08 06:15:50,664] [Preprocessor.java:241] [main] Processing chromosome scaffold47 Processing chromosome scaffold47 INFO [2014-03-08 06:15:50,704] [Preprocessor.java:241] [main] Processing chromosome scaffold470 Processing chromosome scaffold470 INFO [2014-03-08 06:15:50,716] [Preprocessor.java:241] [main] Processing chromosome scaffold471 Processing chromosome scaffold471 INFO [2014-03-08 06:15:50,863] [Preprocessor.java:241] [main] Processing chromosome scaffold472 Processing chromosome scaffold472 INFO [2014-03-08 06:15:50,970] [Preprocessor.java:241] [main] Processing chromosome scaffold473 Processing chromosome scaffold473 INFO [2014-03-08 06:15:51,038] [Preprocessor.java:241] [main] Processing chromosome scaffold474 Processing chromosome scaffold474 INFO [2014-03-08 06:15:51,067] [Preprocessor.java:241] [main] Processing chromosome scaffold475 Processing chromosome scaffold475 INFO [2014-03-08 06:15:51,092] [Preprocessor.java:241] [main] Processing chromosome scaffold476 Processing chromosome scaffold476 INFO [2014-03-08 06:15:51,095] [Preprocessor.java:241] [main] Processing chromosome scaffold477 Processing chromosome scaffold477 INFO [2014-03-08 06:15:51,131] [Preprocessor.java:241] [main] Processing chromosome scaffold478 Processing chromosome scaffold478 INFO [2014-03-08 06:15:51,160] [Preprocessor.java:241] [main] Processing chromosome scaffold479 Processing chromosome scaffold479 INFO [2014-03-08 06:15:51,250] [Preprocessor.java:241] [main] Processing chromosome scaffold48 Processing chromosome scaffold48 INFO [2014-03-08 06:15:51,393] [Preprocessor.java:241] [main] Processing chromosome scaffold481 Processing chromosome scaffold481 INFO [2014-03-08 06:15:51,622] [Preprocessor.java:241] [main] Processing chromosome scaffold482 Processing chromosome scaffold482 INFO [2014-03-08 06:15:51,698] [Preprocessor.java:241] [main] Processing chromosome scaffold483 Processing chromosome scaffold483 INFO [2014-03-08 06:15:51,728] [Preprocessor.java:241] [main] Processing chromosome scaffold484 Processing chromosome scaffold484 INFO [2014-03-08 06:15:51,758] [Preprocessor.java:241] [main] Processing chromosome scaffold485 Processing chromosome scaffold485 INFO [2014-03-08 06:15:51,959] [Preprocessor.java:241] [main] Processing chromosome scaffold486 Processing chromosome scaffold486 INFO [2014-03-08 06:15:51,974] [Preprocessor.java:241] [main] Processing chromosome scaffold487 Processing chromosome scaffold487 INFO [2014-03-08 06:15:52,040] [Preprocessor.java:241] [main] Processing chromosome scaffold488 Processing chromosome scaffold488 INFO [2014-03-08 06:15:52,072] [Preprocessor.java:241] [main] Processing chromosome scaffold489 Processing chromosome scaffold489 INFO [2014-03-08 06:15:52,164] [Preprocessor.java:241] [main] Processing chromosome scaffold49 Processing chromosome scaffold49 INFO [2014-03-08 06:15:52,208] [Preprocessor.java:241] [main] Processing chromosome scaffold490 Processing chromosome scaffold490 INFO [2014-03-08 06:15:52,240] [Preprocessor.java:241] [main] Processing chromosome scaffold491 Processing chromosome scaffold491 INFO [2014-03-08 06:15:52,265] [Preprocessor.java:241] [main] Processing chromosome scaffold492 Processing chromosome scaffold492 INFO [2014-03-08 06:15:52,472] [Preprocessor.java:241] [main] Processing chromosome scaffold493 Processing chromosome scaffold493 INFO [2014-03-08 06:15:52,550] [Preprocessor.java:241] [main] Processing chromosome scaffold494 Processing chromosome scaffold494 INFO [2014-03-08 06:15:52,588] [Preprocessor.java:241] [main] Processing chromosome scaffold496 Processing chromosome scaffold496 INFO [2014-03-08 06:15:52,764] [Preprocessor.java:241] [main] Processing chromosome scaffold497 Processing chromosome scaffold497 INFO [2014-03-08 06:15:52,814] [Preprocessor.java:241] [main] Processing chromosome scaffold498 Processing chromosome scaffold498 INFO [2014-03-08 06:15:52,887] [Preprocessor.java:241] [main] Processing chromosome scaffold499 Processing chromosome scaffold499 INFO [2014-03-08 06:15:52,951] [Preprocessor.java:241] [main] Processing chromosome scaffold5 Processing chromosome scaffold5 INFO [2014-03-08 06:15:52,998] [Preprocessor.java:241] [main] Processing chromosome scaffold50 Processing chromosome scaffold50 INFO [2014-03-08 06:15:53,044] [Preprocessor.java:241] [main] Processing chromosome scaffold500 Processing chromosome scaffold500 INFO [2014-03-08 06:15:53,136] [Preprocessor.java:241] [main] Processing chromosome scaffold501 Processing chromosome scaffold501 INFO [2014-03-08 06:15:53,329] [Preprocessor.java:241] [main] Processing chromosome scaffold502 Processing chromosome scaffold502 .INFO [2014-03-08 06:15:53,435] [Preprocessor.java:241] [main] Processing chromosome scaffold503 Processing chromosome scaffold503 INFO [2014-03-08 06:15:53,496] [Preprocessor.java:241] [main] Processing chromosome scaffold504 Processing chromosome scaffold504 INFO [2014-03-08 06:15:53,587] [Preprocessor.java:241] [main] Processing chromosome scaffold505 Processing chromosome scaffold505 INFO [2014-03-08 06:15:53,602] [Preprocessor.java:241] [main] Processing chromosome scaffold506 Processing chromosome scaffold506 INFO [2014-03-08 06:15:53,727] [Preprocessor.java:241] [main] Processing chromosome scaffold507 Processing chromosome scaffold507 INFO [2014-03-08 06:15:53,806] [Preprocessor.java:241] [main] Processing chromosome scaffold508 Processing chromosome scaffold508 INFO [2014-03-08 06:15:53,875] [Preprocessor.java:241] [main] Processing chromosome scaffold509 Processing chromosome scaffold509 INFO [2014-03-08 06:15:53,983] [Preprocessor.java:241] [main] Processing chromosome scaffold510 Processing chromosome scaffold510 INFO [2014-03-08 06:15:54,041] [Preprocessor.java:241] [main] Processing chromosome scaffold511 Processing chromosome scaffold511 INFO [2014-03-08 06:15:54,077] [Preprocessor.java:241] [main] Processing chromosome scaffold513 Processing chromosome scaffold513 INFO [2014-03-08 06:15:54,241] [Preprocessor.java:241] [main] Processing chromosome scaffold514 Processing chromosome scaffold514 INFO [2014-03-08 06:15:54,348] [Preprocessor.java:241] [main] Processing chromosome scaffold515 Processing chromosome scaffold515 INFO [2014-03-08 06:15:54,356] [Preprocessor.java:241] [main] Processing chromosome scaffold516 Processing chromosome scaffold516 INFO [2014-03-08 06:15:54,368] [Preprocessor.java:241] [main] Processing chromosome scaffold517 Processing chromosome scaffold517 INFO [2014-03-08 06:15:54,401] [Preprocessor.java:241] [main] Processing chromosome scaffold518 Processing chromosome scaffold518 INFO [2014-03-08 06:15:54,406] [Preprocessor.java:241] [main] Processing chromosome scaffold520 Processing chromosome scaffold520 INFO [2014-03-08 06:15:54,437] [Preprocessor.java:241] [main] Processing chromosome scaffold521 Processing chromosome scaffold521 INFO [2014-03-08 06:15:54,487] [Preprocessor.java:241] [main] Processing chromosome scaffold522 Processing chromosome scaffold522 INFO [2014-03-08 06:15:54,689] [Preprocessor.java:241] [main] Processing chromosome scaffold523 Processing chromosome scaffold523 INFO [2014-03-08 06:15:54,719] [Preprocessor.java:241] [main] Processing chromosome scaffold524 Processing chromosome scaffold524 INFO [2014-03-08 06:15:54,778] [Preprocessor.java:241] [main] Processing chromosome scaffold525 Processing chromosome scaffold525 INFO [2014-03-08 06:15:54,809] [Preprocessor.java:241] [main] Processing chromosome scaffold527 Processing chromosome scaffold527 INFO [2014-03-08 06:15:54,878] [Preprocessor.java:241] [main] Processing chromosome scaffold528 Processing chromosome scaffold528 INFO [2014-03-08 06:15:54,889] [Preprocessor.java:241] [main] Processing chromosome scaffold53 Processing chromosome scaffold53 INFO [2014-03-08 06:15:55,078] [Preprocessor.java:241] [main] Processing chromosome scaffold531 Processing chromosome scaffold531 INFO [2014-03-08 06:15:55,137] [Preprocessor.java:241] [main] Processing chromosome scaffold532 Processing chromosome scaffold532 INFO [2014-03-08 06:15:55,200] [Preprocessor.java:241] [main] Processing chromosome scaffold533 Processing chromosome scaffold533 INFO [2014-03-08 06:15:55,224] [Preprocessor.java:241] [main] Processing chromosome scaffold534 Processing chromosome scaffold534 INFO [2014-03-08 06:15:55,266] [Preprocessor.java:241] [main] Processing chromosome scaffold535 Processing chromosome scaffold535 INFO [2014-03-08 06:15:55,366] [Preprocessor.java:241] [main] Processing chromosome scaffold536 Processing chromosome scaffold536 INFO [2014-03-08 06:15:55,436] [Preprocessor.java:241] [main] Processing chromosome scaffold54 Processing chromosome scaffold54 INFO [2014-03-08 06:15:55,546] [Preprocessor.java:241] [main] Processing chromosome scaffold540 Processing chromosome scaffold540 INFO [2014-03-08 06:15:55,567] [Preprocessor.java:241] [main] Processing chromosome scaffold541 Processing chromosome scaffold541 INFO [2014-03-08 06:15:55,661] [Preprocessor.java:241] [main] Processing chromosome scaffold542 Processing chromosome scaffold542 INFO [2014-03-08 06:15:55,742] [Preprocessor.java:241] [main] Processing chromosome scaffold543 Processing chromosome scaffold543 INFO [2014-03-08 06:15:55,762] [Preprocessor.java:241] [main] Processing chromosome scaffold544 Processing chromosome scaffold544 INFO [2014-03-08 06:15:55,939] [Preprocessor.java:241] [main] Processing chromosome scaffold546 Processing chromosome scaffold546 INFO [2014-03-08 06:15:56,101] [Preprocessor.java:241] [main] Processing chromosome scaffold547 Processing chromosome scaffold547 INFO [2014-03-08 06:15:56,231] [Preprocessor.java:241] [main] Processing chromosome scaffold548 Processing chromosome scaffold548 INFO [2014-03-08 06:15:56,267] [Preprocessor.java:241] [main] Processing chromosome scaffold549 Processing chromosome scaffold549 30.0% INFO [2014-03-08 06:15:56,314] [Preprocessor.java:241] [main] Processing chromosome scaffold55 Processing chromosome scaffold55 INFO [2014-03-08 06:15:56,328] [Preprocessor.java:241] [main] Processing chromosome scaffold550 Processing chromosome scaffold550 INFO [2014-03-08 06:15:56,402] [Preprocessor.java:241] [main] Processing chromosome scaffold551 Processing chromosome scaffold551 INFO [2014-03-08 06:15:56,418] [Preprocessor.java:241] [main] Processing chromosome scaffold552 Processing chromosome scaffold552 INFO [2014-03-08 06:15:56,483] [Preprocessor.java:241] [main] Processing chromosome scaffold554 Processing chromosome scaffold554 INFO [2014-03-08 06:15:56,488] [Preprocessor.java:241] [main] Processing chromosome scaffold556 Processing chromosome scaffold556 INFO [2014-03-08 06:15:56,750] [Preprocessor.java:241] [main] Processing chromosome scaffold557 Processing chromosome scaffold557 INFO [2014-03-08 06:15:56,858] [Preprocessor.java:241] [main] Processing chromosome scaffold558 Processing chromosome scaffold558 INFO [2014-03-08 06:15:56,872] [Preprocessor.java:241] [main] Processing chromosome scaffold559 Processing chromosome scaffold559 INFO [2014-03-08 06:15:56,891] [Preprocessor.java:241] [main] Processing chromosome scaffold560 Processing chromosome scaffold560 INFO [2014-03-08 06:15:56,976] [Preprocessor.java:241] [main] Processing chromosome scaffold562 Processing chromosome scaffold562 INFO [2014-03-08 06:15:57,062] [Preprocessor.java:241] [main] Processing chromosome scaffold563 Processing chromosome scaffold563 INFO [2014-03-08 06:15:57,204] [Preprocessor.java:241] [main] Processing chromosome scaffold564 Processing chromosome scaffold564 INFO [2014-03-08 06:15:57,321] [Preprocessor.java:241] [main] Processing chromosome scaffold565 Processing chromosome scaffold565 INFO [2014-03-08 06:15:57,340] [Preprocessor.java:241] [main] Processing chromosome scaffold568 Processing chromosome scaffold568 INFO [2014-03-08 06:15:57,355] [Preprocessor.java:241] [main] Processing chromosome scaffold569 Processing chromosome scaffold569 INFO [2014-03-08 06:15:57,411] [Preprocessor.java:241] [main] Processing chromosome scaffold57 Processing chromosome scaffold57 INFO [2014-03-08 06:15:57,572] [Preprocessor.java:241] [main] Processing chromosome scaffold570 Processing chromosome scaffold570 INFO [2014-03-08 06:15:57,605] [Preprocessor.java:241] [main] Processing chromosome scaffold572 Processing chromosome scaffold572 INFO [2014-03-08 06:15:57,645] [Preprocessor.java:241] [main] Processing chromosome scaffold574 Processing chromosome scaffold574 INFO [2014-03-08 06:15:57,715] [Preprocessor.java:241] [main] Processing chromosome scaffold575 Processing chromosome scaffold575 INFO [2014-03-08 06:15:57,769] [Preprocessor.java:241] [main] Processing chromosome scaffold576 Processing chromosome scaffold576 INFO [2014-03-08 06:15:57,932] [Preprocessor.java:241] [main] Processing chromosome scaffold577 Processing chromosome scaffold577 INFO [2014-03-08 06:15:57,977] [Preprocessor.java:241] [main] Processing chromosome scaffold578 Processing chromosome scaffold578 INFO [2014-03-08 06:15:58,137] [Preprocessor.java:241] [main] Processing chromosome scaffold579 Processing chromosome scaffold579 INFO [2014-03-08 06:15:58,185] [Preprocessor.java:241] [main] Processing chromosome scaffold58 Processing chromosome scaffold58 INFO [2014-03-08 06:15:58,287] [Preprocessor.java:241] [main] Processing chromosome scaffold580 Processing chromosome scaffold580 INFO [2014-03-08 06:15:58,437] [Preprocessor.java:241] [main] Processing chromosome scaffold581 Processing chromosome scaffold581 INFO [2014-03-08 06:15:58,491] [Preprocessor.java:241] [main] Processing chromosome scaffold582 Processing chromosome scaffold582 INFO [2014-03-08 06:15:58,502] [Preprocessor.java:241] [main] Processing chromosome scaffold583 Processing chromosome scaffold583 INFO [2014-03-08 06:15:58,652] [Preprocessor.java:241] [main] Processing chromosome scaffold585 Processing chromosome scaffold585 INFO [2014-03-08 06:15:58,749] [Preprocessor.java:241] [main] Processing chromosome scaffold586 Processing chromosome scaffold586 INFO [2014-03-08 06:15:58,888] [Preprocessor.java:241] [main] Processing chromosome scaffold587 Processing chromosome scaffold587 INFO [2014-03-08 06:15:58,968] [Preprocessor.java:241] [main] Processing chromosome scaffold588 Processing chromosome scaffold588 INFO [2014-03-08 06:15:59,073] [Preprocessor.java:241] [main] Processing chromosome scaffold589 Processing chromosome scaffold589 INFO [2014-03-08 06:15:59,103] [Preprocessor.java:241] [main] Processing chromosome scaffold59 Processing chromosome scaffold59 INFO [2014-03-08 06:15:59,157] [Preprocessor.java:241] [main] Processing chromosome scaffold591 Processing chromosome scaffold591 .INFO [2014-03-08 06:15:59,372] [Preprocessor.java:241] [main] Processing chromosome scaffold592 Processing chromosome scaffold592 INFO [2014-03-08 06:15:59,428] [Preprocessor.java:241] [main] Processing chromosome scaffold593 Processing chromosome scaffold593 INFO [2014-03-08 06:15:59,565] [Preprocessor.java:241] [main] Processing chromosome scaffold594 Processing chromosome scaffold594 INFO [2014-03-08 06:15:59,680] [Preprocessor.java:241] [main] Processing chromosome scaffold595 Processing chromosome scaffold595 INFO [2014-03-08 06:15:59,697] [Preprocessor.java:241] [main] Processing chromosome scaffold596 Processing chromosome scaffold596 INFO [2014-03-08 06:15:59,790] [Preprocessor.java:241] [main] Processing chromosome scaffold597 Processing chromosome scaffold597 INFO [2014-03-08 06:15:59,826] [Preprocessor.java:241] [main] Processing chromosome scaffold598 Processing chromosome scaffold598 INFO [2014-03-08 06:15:59,851] [Preprocessor.java:241] [main] Processing chromosome scaffold599 Processing chromosome scaffold599 INFO [2014-03-08 06:15:59,947] [Preprocessor.java:241] [main] Processing chromosome scaffold6 Processing chromosome scaffold6 INFO [2014-03-08 06:16:00,046] [Preprocessor.java:241] [main] Processing chromosome scaffold60 Processing chromosome scaffold60 INFO [2014-03-08 06:16:00,079] [Preprocessor.java:241] [main] Processing chromosome scaffold600 Processing chromosome scaffold600 INFO [2014-03-08 06:16:00,098] [Preprocessor.java:241] [main] Processing chromosome scaffold601 Processing chromosome scaffold601 INFO [2014-03-08 06:16:00,299] [Preprocessor.java:241] [main] Processing chromosome scaffold602 Processing chromosome scaffold602 INFO [2014-03-08 06:16:00,493] [Preprocessor.java:241] [main] Processing chromosome scaffold603 Processing chromosome scaffold603 INFO [2014-03-08 06:16:00,534] [Preprocessor.java:241] [main] Processing chromosome scaffold604 Processing chromosome scaffold604 INFO [2014-03-08 06:16:00,597] [Preprocessor.java:241] [main] Processing chromosome scaffold605 Processing chromosome scaffold605 INFO [2014-03-08 06:16:00,627] [Preprocessor.java:241] [main] Processing chromosome scaffold606 Processing chromosome scaffold606 INFO [2014-03-08 06:16:00,661] [Preprocessor.java:241] [main] Processing chromosome scaffold607 Processing chromosome scaffold607 INFO [2014-03-08 06:16:00,680] [Preprocessor.java:241] [main] Processing chromosome scaffold608 Processing chromosome scaffold608 INFO [2014-03-08 06:16:00,723] [Preprocessor.java:241] [main] Processing chromosome scaffold609 Processing chromosome scaffold609 INFO [2014-03-08 06:16:00,775] [Preprocessor.java:241] [main] Processing chromosome scaffold61 Processing chromosome scaffold61 INFO [2014-03-08 06:16:00,839] [Preprocessor.java:241] [main] Processing chromosome scaffold610 Processing chromosome scaffold610 INFO [2014-03-08 06:16:01,036] [Preprocessor.java:241] [main] Processing chromosome scaffold611 Processing chromosome scaffold611 INFO [2014-03-08 06:16:01,048] [Preprocessor.java:241] [main] Processing chromosome scaffold612 Processing chromosome scaffold612 INFO [2014-03-08 06:16:01,117] [Preprocessor.java:241] [main] Processing chromosome scaffold613 Processing chromosome scaffold613 INFO [2014-03-08 06:16:01,122] [Preprocessor.java:241] [main] Processing chromosome scaffold614 Processing chromosome scaffold614 INFO [2014-03-08 06:16:01,196] [Preprocessor.java:241] [main] Processing chromosome scaffold615 Processing chromosome scaffold615 INFO [2014-03-08 06:16:01,216] [Preprocessor.java:241] [main] Processing chromosome scaffold616 Processing chromosome scaffold616 INFO [2014-03-08 06:16:01,303] [Preprocessor.java:241] [main] Processing chromosome scaffold617 Processing chromosome scaffold617 INFO [2014-03-08 06:16:01,405] [Preprocessor.java:241] [main] Processing chromosome scaffold619 Processing chromosome scaffold619 INFO [2014-03-08 06:16:01,568] [Preprocessor.java:241] [main] Processing chromosome scaffold62 Processing chromosome scaffold62 INFO [2014-03-08 06:16:01,648] [Preprocessor.java:241] [main] Processing chromosome scaffold620 Processing chromosome scaffold620 INFO [2014-03-08 06:16:01,667] [Preprocessor.java:241] [main] Processing chromosome scaffold621 Processing chromosome scaffold621 INFO [2014-03-08 06:16:01,745] [Preprocessor.java:241] [main] Processing chromosome scaffold622 Processing chromosome scaffold622 INFO [2014-03-08 06:16:01,846] [Preprocessor.java:241] [main] Processing chromosome scaffold624 Processing chromosome scaffold624 INFO [2014-03-08 06:16:01,864] [Preprocessor.java:241] [main] Processing chromosome scaffold625 Processing chromosome scaffold625 INFO [2014-03-08 06:16:02,123] [Preprocessor.java:241] [main] Processing chromosome scaffold626 Processing chromosome scaffold626 .INFO [2014-03-08 06:16:02,201] [Preprocessor.java:241] [main] Processing chromosome scaffold627 Processing chromosome scaffold627 INFO [2014-03-08 06:16:02,205] [Preprocessor.java:241] [main] Processing chromosome scaffold629 Processing chromosome scaffold629 INFO [2014-03-08 06:16:02,264] [Preprocessor.java:241] [main] Processing chromosome scaffold63 Processing chromosome scaffold63 INFO [2014-03-08 06:16:02,341] [Preprocessor.java:241] [main] Processing chromosome scaffold630 Processing chromosome scaffold630 INFO [2014-03-08 06:16:02,476] [Preprocessor.java:241] [main] Processing chromosome scaffold631 Processing chromosome scaffold631 INFO [2014-03-08 06:16:02,570] [Preprocessor.java:241] [main] Processing chromosome scaffold632 Processing chromosome scaffold632 INFO [2014-03-08 06:16:02,690] [Preprocessor.java:241] [main] Processing chromosome scaffold633 Processing chromosome scaffold633 INFO [2014-03-08 06:16:02,712] [Preprocessor.java:241] [main] Processing chromosome scaffold634 Processing chromosome scaffold634 INFO [2014-03-08 06:16:02,724] [Preprocessor.java:241] [main] Processing chromosome scaffold635 Processing chromosome scaffold635 INFO [2014-03-08 06:16:02,763] [Preprocessor.java:241] [main] Processing chromosome scaffold636 Processing chromosome scaffold636 INFO [2014-03-08 06:16:02,787] [Preprocessor.java:241] [main] Processing chromosome scaffold638 Processing chromosome scaffold638 INFO [2014-03-08 06:16:02,802] [Preprocessor.java:241] [main] Processing chromosome scaffold639 Processing chromosome scaffold639 INFO [2014-03-08 06:16:02,821] [Preprocessor.java:241] [main] Processing chromosome scaffold64 Processing chromosome scaffold64 INFO [2014-03-08 06:16:02,867] [Preprocessor.java:241] [main] Processing chromosome scaffold640 Processing chromosome scaffold640 INFO [2014-03-08 06:16:02,927] [Preprocessor.java:241] [main] Processing chromosome scaffold641 Processing chromosome scaffold641 INFO [2014-03-08 06:16:02,935] [Preprocessor.java:241] [main] Processing chromosome scaffold642 Processing chromosome scaffold642 INFO [2014-03-08 06:16:02,958] [Preprocessor.java:241] [main] Processing chromosome scaffold643 Processing chromosome scaffold643 INFO [2014-03-08 06:16:02,984] [Preprocessor.java:241] [main] Processing chromosome scaffold644 Processing chromosome scaffold644 INFO [2014-03-08 06:16:03,000] [Preprocessor.java:241] [main] Processing chromosome scaffold645 Processing chromosome scaffold645 INFO [2014-03-08 06:16:03,011] [Preprocessor.java:241] [main] Processing chromosome scaffold646 Processing chromosome scaffold646 INFO [2014-03-08 06:16:03,021] [Preprocessor.java:241] [main] Processing chromosome scaffold647 Processing chromosome scaffold647 INFO [2014-03-08 06:16:03,076] [Preprocessor.java:241] [main] Processing chromosome scaffold649 Processing chromosome scaffold649 INFO [2014-03-08 06:16:03,090] [Preprocessor.java:241] [main] Processing chromosome scaffold65 Processing chromosome scaffold65 INFO [2014-03-08 06:16:03,140] [Preprocessor.java:241] [main] Processing chromosome scaffold650 Processing chromosome scaffold650 INFO [2014-03-08 06:16:03,164] [Preprocessor.java:241] [main] Processing chromosome scaffold654 Processing chromosome scaffold654 INFO [2014-03-08 06:16:03,196] [Preprocessor.java:241] [main] Processing chromosome scaffold655 Processing chromosome scaffold655 INFO [2014-03-08 06:16:03,324] [Preprocessor.java:241] [main] Processing chromosome scaffold657 Processing chromosome scaffold657 INFO [2014-03-08 06:16:03,348] [Preprocessor.java:241] [main] Processing chromosome scaffold658 Processing chromosome scaffold658 INFO [2014-03-08 06:16:03,404] [Preprocessor.java:241] [main] Processing chromosome scaffold659 Processing chromosome scaffold659 INFO [2014-03-08 06:16:03,518] [Preprocessor.java:241] [main] Processing chromosome scaffold66 Processing chromosome scaffold66 INFO [2014-03-08 06:16:03,538] [Preprocessor.java:241] [main] Processing chromosome scaffold660 Processing chromosome scaffold660 INFO [2014-03-08 06:16:03,618] [Preprocessor.java:241] [main] Processing chromosome scaffold661 Processing chromosome scaffold661 INFO [2014-03-08 06:16:03,630] [Preprocessor.java:241] [main] Processing chromosome scaffold662 Processing chromosome scaffold662 INFO [2014-03-08 06:16:03,639] [Preprocessor.java:241] [main] Processing chromosome scaffold663 Processing chromosome scaffold663 INFO [2014-03-08 06:16:03,690] [Preprocessor.java:241] [main] Processing chromosome scaffold664 Processing chromosome scaffold664 INFO [2014-03-08 06:16:03,756] [Preprocessor.java:241] [main] Processing chromosome scaffold665 Processing chromosome scaffold665 INFO [2014-03-08 06:16:03,824] [Preprocessor.java:241] [main] Processing chromosome scaffold666 Processing chromosome scaffold666 INFO [2014-03-08 06:16:03,829] [Preprocessor.java:241] [main] Processing chromosome scaffold667 Processing chromosome scaffold667 INFO [2014-03-08 06:16:03,856] [Preprocessor.java:241] [main] Processing chromosome scaffold668 Processing chromosome scaffold668 INFO [2014-03-08 06:16:03,868] [Preprocessor.java:241] [main] Processing chromosome scaffold669 Processing chromosome scaffold669 INFO [2014-03-08 06:16:03,878] [Preprocessor.java:241] [main] Processing chromosome scaffold67 Processing chromosome scaffold67 INFO [2014-03-08 06:16:03,962] [Preprocessor.java:241] [main] Processing chromosome scaffold670 Processing chromosome scaffold670 INFO [2014-03-08 06:16:04,004] [Preprocessor.java:241] [main] Processing chromosome scaffold671 Processing chromosome scaffold671 INFO [2014-03-08 06:16:04,014] [Preprocessor.java:241] [main] Processing chromosome scaffold672 Processing chromosome scaffold672 INFO [2014-03-08 06:16:04,101] [Preprocessor.java:241] [main] Processing chromosome scaffold673 Processing chromosome scaffold673 INFO [2014-03-08 06:16:04,149] [Preprocessor.java:241] [main] Processing chromosome scaffold674 Processing chromosome scaffold674 INFO [2014-03-08 06:16:04,173] [Preprocessor.java:241] [main] Processing chromosome scaffold675 Processing chromosome scaffold675 INFO [2014-03-08 06:16:04,327] [Preprocessor.java:241] [main] Processing chromosome scaffold676 Processing chromosome scaffold676 INFO [2014-03-08 06:16:04,406] [Preprocessor.java:241] [main] Processing chromosome scaffold677 Processing chromosome scaffold677 INFO [2014-03-08 06:16:04,452] [Preprocessor.java:241] [main] Processing chromosome scaffold678 Processing chromosome scaffold678 INFO [2014-03-08 06:16:04,644] [Preprocessor.java:241] [main] Processing chromosome scaffold679 Processing chromosome scaffold679 INFO [2014-03-08 06:16:04,667] [Preprocessor.java:241] [main] Processing chromosome scaffold68 Processing chromosome scaffold68 INFO [2014-03-08 06:16:04,674] [Preprocessor.java:241] [main] Processing chromosome scaffold680 Processing chromosome scaffold680 INFO [2014-03-08 06:16:04,689] [Preprocessor.java:241] [main] Processing chromosome scaffold681 Processing chromosome scaffold681 INFO [2014-03-08 06:16:04,753] [Preprocessor.java:241] [main] Processing chromosome scaffold682 Processing chromosome scaffold682 INFO [2014-03-08 06:16:04,789] [Preprocessor.java:241] [main] Processing chromosome scaffold683 Processing chromosome scaffold683 INFO [2014-03-08 06:16:04,848] [Preprocessor.java:241] [main] Processing chromosome scaffold685 Processing chromosome scaffold685 INFO [2014-03-08 06:16:04,898] [Preprocessor.java:241] [main] Processing chromosome scaffold686 Processing chromosome scaffold686 INFO [2014-03-08 06:16:04,924] [Preprocessor.java:241] [main] Processing chromosome scaffold687 Processing chromosome scaffold687 INFO [2014-03-08 06:16:04,960] [Preprocessor.java:241] [main] Processing chromosome scaffold688 Processing chromosome scaffold688 INFO [2014-03-08 06:16:04,966] [Preprocessor.java:241] [main] Processing chromosome scaffold689 Processing chromosome scaffold689 INFO [2014-03-08 06:16:05,020] [Preprocessor.java:241] [main] Processing chromosome scaffold69 Processing chromosome scaffold69 INFO [2014-03-08 06:16:05,045] [Preprocessor.java:241] [main] Processing chromosome scaffold690 Processing chromosome scaffold690 INFO [2014-03-08 06:16:05,063] [Preprocessor.java:241] [main] Processing chromosome scaffold693 Processing chromosome scaffold693 INFO [2014-03-08 06:16:05,068] [Preprocessor.java:241] [main] Processing chromosome scaffold694 Processing chromosome scaffold694 INFO [2014-03-08 06:16:05,104] [Preprocessor.java:241] [main] Processing chromosome scaffold695 Processing chromosome scaffold695 INFO [2014-03-08 06:16:05,307] [Preprocessor.java:241] [main] Processing chromosome scaffold696 Processing chromosome scaffold696 INFO [2014-03-08 06:16:05,361] [Preprocessor.java:241] [main] Processing chromosome scaffold698 Processing chromosome scaffold698 INFO [2014-03-08 06:16:05,446] [Preprocessor.java:241] [main] Processing chromosome scaffold7 Processing chromosome scaffold7 INFO [2014-03-08 06:16:05,453] [Preprocessor.java:241] [main] Processing chromosome scaffold70 Processing chromosome scaffold70 INFO [2014-03-08 06:16:05,626] [Preprocessor.java:241] [main] Processing chromosome scaffold700 Processing chromosome scaffold700 INFO [2014-03-08 06:16:05,648] [Preprocessor.java:241] [main] Processing chromosome scaffold701 Processing chromosome scaffold701 INFO [2014-03-08 06:16:05,650] [Preprocessor.java:241] [main] Processing chromosome scaffold702 Processing chromosome scaffold702 INFO [2014-03-08 06:16:05,653] [Preprocessor.java:241] [main] Processing chromosome scaffold703 Processing chromosome scaffold703 INFO [2014-03-08 06:16:05,663] [Preprocessor.java:241] [main] Processing chromosome scaffold705 Processing chromosome scaffold705 .INFO [2014-03-08 06:16:05,765] [Preprocessor.java:241] [main] Processing chromosome scaffold706 Processing chromosome scaffold706 INFO [2014-03-08 06:16:05,797] [Preprocessor.java:241] [main] Processing chromosome scaffold707 Processing chromosome scaffold707 INFO [2014-03-08 06:16:05,846] [Preprocessor.java:241] [main] Processing chromosome scaffold709 Processing chromosome scaffold709 INFO [2014-03-08 06:16:05,919] [Preprocessor.java:241] [main] Processing chromosome scaffold71 Processing chromosome scaffold71 INFO [2014-03-08 06:16:06,000] [Preprocessor.java:241] [main] Processing chromosome scaffold710 Processing chromosome scaffold710 INFO [2014-03-08 06:16:06,007] [Preprocessor.java:241] [main] Processing chromosome scaffold711 Processing chromosome scaffold711 INFO [2014-03-08 06:16:06,043] [Preprocessor.java:241] [main] Processing chromosome scaffold712 Processing chromosome scaffold712 INFO [2014-03-08 06:16:06,133] [Preprocessor.java:241] [main] Processing chromosome scaffold713 Processing chromosome scaffold713 INFO [2014-03-08 06:16:06,236] [Preprocessor.java:241] [main] Processing chromosome scaffold714 Processing chromosome scaffold714 INFO [2014-03-08 06:16:06,289] [Preprocessor.java:241] [main] Processing chromosome scaffold715 Processing chromosome scaffold715 INFO [2014-03-08 06:16:06,319] [Preprocessor.java:241] [main] Processing chromosome scaffold716 Processing chromosome scaffold716 INFO [2014-03-08 06:16:06,401] [Preprocessor.java:241] [main] Processing chromosome scaffold718 Processing chromosome scaffold718 INFO [2014-03-08 06:16:06,449] [Preprocessor.java:241] [main] Processing chromosome scaffold719 Processing chromosome scaffold719 INFO [2014-03-08 06:16:06,481] [Preprocessor.java:241] [main] Processing chromosome scaffold72 Processing chromosome scaffold72 INFO [2014-03-08 06:16:06,528] [Preprocessor.java:241] [main] Processing chromosome scaffold720 Processing chromosome scaffold720 INFO [2014-03-08 06:16:06,571] [Preprocessor.java:241] [main] Processing chromosome scaffold721 Processing chromosome scaffold721 INFO [2014-03-08 06:16:06,722] [Preprocessor.java:241] [main] Processing chromosome scaffold722 Processing chromosome scaffold722 INFO [2014-03-08 06:16:06,855] [Preprocessor.java:241] [main] Processing chromosome scaffold723 Processing chromosome scaffold723 INFO [2014-03-08 06:16:06,928] [Preprocessor.java:241] [main] Processing chromosome scaffold724 Processing chromosome scaffold724 INFO [2014-03-08 06:16:06,970] [Preprocessor.java:241] [main] Processing chromosome scaffold726 Processing chromosome scaffold726 INFO [2014-03-08 06:16:07,054] [Preprocessor.java:241] [main] Processing chromosome scaffold727 Processing chromosome scaffold727 INFO [2014-03-08 06:16:07,097] [Preprocessor.java:241] [main] Processing chromosome scaffold728 Processing chromosome scaffold728 INFO [2014-03-08 06:16:07,264] [Preprocessor.java:241] [main] Processing chromosome scaffold729 Processing chromosome scaffold729 INFO [2014-03-08 06:16:07,279] [Preprocessor.java:241] [main] Processing chromosome scaffold73 Processing chromosome scaffold73 INFO [2014-03-08 06:16:07,290] [Preprocessor.java:241] [main] Processing chromosome scaffold730 Processing chromosome scaffold730 INFO [2014-03-08 06:16:07,399] [Preprocessor.java:241] [main] Processing chromosome scaffold733 Processing chromosome scaffold733 INFO [2014-03-08 06:16:07,524] [Preprocessor.java:241] [main] Processing chromosome scaffold734 Processing chromosome scaffold734 INFO [2014-03-08 06:16:07,538] [Preprocessor.java:241] [main] Processing chromosome scaffold735 Processing chromosome scaffold735 INFO [2014-03-08 06:16:07,557] [Preprocessor.java:241] [main] Processing chromosome scaffold736 Processing chromosome scaffold736 INFO [2014-03-08 06:16:07,583] [Preprocessor.java:241] [main] Processing chromosome scaffold737 Processing chromosome scaffold737 INFO [2014-03-08 06:16:07,684] [Preprocessor.java:241] [main] Processing chromosome scaffold738 Processing chromosome scaffold738 INFO [2014-03-08 06:16:07,711] [Preprocessor.java:241] [main] Processing chromosome scaffold739 Processing chromosome scaffold739 INFO [2014-03-08 06:16:07,724] [Preprocessor.java:241] [main] Processing chromosome scaffold74 Processing chromosome scaffold74 INFO [2014-03-08 06:16:07,734] [Preprocessor.java:241] [main] Processing chromosome scaffold742 Processing chromosome scaffold742 INFO [2014-03-08 06:16:07,741] [Preprocessor.java:241] [main] Processing chromosome scaffold743 Processing chromosome scaffold743 INFO [2014-03-08 06:16:07,779] [Preprocessor.java:241] [main] Processing chromosome scaffold744 Processing chromosome scaffold744 INFO [2014-03-08 06:16:07,798] [Preprocessor.java:241] [main] Processing chromosome scaffold745 Processing chromosome scaffold745 INFO [2014-03-08 06:16:07,801] [Preprocessor.java:241] [main] Processing chromosome scaffold746 Processing chromosome scaffold746 INFO [2014-03-08 06:16:07,804] [Preprocessor.java:241] [main] Processing chromosome scaffold747 Processing chromosome scaffold747 INFO [2014-03-08 06:16:07,879] [Preprocessor.java:241] [main] Processing chromosome scaffold748 Processing chromosome scaffold748 INFO [2014-03-08 06:16:07,931] [Preprocessor.java:241] [main] Processing chromosome scaffold749 Processing chromosome scaffold749 INFO [2014-03-08 06:16:07,979] [Preprocessor.java:241] [main] Processing chromosome scaffold75 Processing chromosome scaffold75 INFO [2014-03-08 06:16:08,020] [Preprocessor.java:241] [main] Processing chromosome scaffold750 Processing chromosome scaffold750 INFO [2014-03-08 06:16:08,098] [Preprocessor.java:241] [main] Processing chromosome scaffold751 Processing chromosome scaffold751 INFO [2014-03-08 06:16:08,212] [Preprocessor.java:241] [main] Processing chromosome scaffold752 Processing chromosome scaffold752 INFO [2014-03-08 06:16:08,249] [Preprocessor.java:241] [main] Processing chromosome scaffold753 Processing chromosome scaffold753 INFO [2014-03-08 06:16:08,346] [Preprocessor.java:241] [main] Processing chromosome scaffold754 Processing chromosome scaffold754 INFO [2014-03-08 06:16:08,423] [Preprocessor.java:241] [main] Processing chromosome scaffold756 Processing chromosome scaffold756 INFO [2014-03-08 06:16:08,493] [Preprocessor.java:241] [main] Processing chromosome scaffold758 Processing chromosome scaffold758 INFO [2014-03-08 06:16:08,557] [Preprocessor.java:241] [main] Processing chromosome scaffold759 Processing chromosome scaffold759 INFO [2014-03-08 06:16:08,633] [Preprocessor.java:241] [main] Processing chromosome scaffold76 Processing chromosome scaffold76 INFO [2014-03-08 06:16:08,702] [Preprocessor.java:241] [main] Processing chromosome scaffold760 Processing chromosome scaffold760 INFO [2014-03-08 06:16:08,861] [Preprocessor.java:241] [main] Processing chromosome scaffold761 Processing chromosome scaffold761 INFO [2014-03-08 06:16:08,884] [Preprocessor.java:241] [main] Processing chromosome scaffold762 Processing chromosome scaffold762 INFO [2014-03-08 06:16:08,918] [Preprocessor.java:241] [main] Processing chromosome scaffold763 Processing chromosome scaffold763 INFO [2014-03-08 06:16:08,935] [Preprocessor.java:241] [main] Processing chromosome scaffold764 Processing chromosome scaffold764 INFO [2014-03-08 06:16:08,948] [Preprocessor.java:241] [main] Processing chromosome scaffold765 Processing chromosome scaffold765 INFO [2014-03-08 06:16:09,055] [Preprocessor.java:241] [main] Processing chromosome scaffold766 Processing chromosome scaffold766 INFO [2014-03-08 06:16:09,083] [Preprocessor.java:241] [main] Processing chromosome scaffold767 Processing chromosome scaffold767 .INFO [2014-03-08 06:16:09,161] [Preprocessor.java:241] [main] Processing chromosome scaffold769 Processing chromosome scaffold769 INFO [2014-03-08 06:16:09,169] [Preprocessor.java:241] [main] Processing chromosome scaffold77 Processing chromosome scaffold77 INFO [2014-03-08 06:16:09,400] [Preprocessor.java:241] [main] Processing chromosome scaffold770 Processing chromosome scaffold770 INFO [2014-03-08 06:16:09,426] [Preprocessor.java:241] [main] Processing chromosome scaffold771 Processing chromosome scaffold771 INFO [2014-03-08 06:16:09,559] [Preprocessor.java:241] [main] Processing chromosome scaffold772 Processing chromosome scaffold772 INFO [2014-03-08 06:16:09,624] [Preprocessor.java:241] [main] Processing chromosome scaffold773 Processing chromosome scaffold773 INFO [2014-03-08 06:16:09,666] [Preprocessor.java:241] [main] Processing chromosome scaffold775 Processing chromosome scaffold775 INFO [2014-03-08 06:16:09,715] [Preprocessor.java:241] [main] Processing chromosome scaffold776 Processing chromosome scaffold776 INFO [2014-03-08 06:16:09,723] [Preprocessor.java:241] [main] Processing chromosome scaffold778 Processing chromosome scaffold778 INFO [2014-03-08 06:16:09,728] [Preprocessor.java:241] [main] Processing chromosome scaffold78 Processing chromosome scaffold78 INFO [2014-03-08 06:16:09,764] [Preprocessor.java:241] [main] Processing chromosome scaffold780 Processing chromosome scaffold780 INFO [2014-03-08 06:16:10,049] [Preprocessor.java:241] [main] Processing chromosome scaffold781 Processing chromosome scaffold781 INFO [2014-03-08 06:16:10,059] [Preprocessor.java:241] [main] Processing chromosome scaffold782 Processing chromosome scaffold782 INFO [2014-03-08 06:16:10,151] [Preprocessor.java:241] [main] Processing chromosome scaffold783 Processing chromosome scaffold783 INFO [2014-03-08 06:16:10,219] [Preprocessor.java:241] [main] Processing chromosome scaffold784 Processing chromosome scaffold784 INFO [2014-03-08 06:16:10,319] [Preprocessor.java:241] [main] Processing chromosome scaffold786 Processing chromosome scaffold786 INFO [2014-03-08 06:16:10,463] [Preprocessor.java:241] [main] Processing chromosome scaffold787 Processing chromosome scaffold787 INFO [2014-03-08 06:16:10,550] [Preprocessor.java:241] [main] Processing chromosome scaffold788 Processing chromosome scaffold788 INFO [2014-03-08 06:16:10,570] [Preprocessor.java:241] [main] Processing chromosome scaffold789 Processing chromosome scaffold789 INFO [2014-03-08 06:16:10,712] [Preprocessor.java:241] [main] Processing chromosome scaffold79 Processing chromosome scaffold79 INFO [2014-03-08 06:16:10,892] [Preprocessor.java:241] [main] Processing chromosome scaffold790 Processing chromosome scaffold790 INFO [2014-03-08 06:16:10,968] [Preprocessor.java:241] [main] Processing chromosome scaffold792 Processing chromosome scaffold792 INFO [2014-03-08 06:16:10,971] [Preprocessor.java:241] [main] Processing chromosome scaffold793 Processing chromosome scaffold793 INFO [2014-03-08 06:16:11,023] [Preprocessor.java:241] [main] Processing chromosome scaffold794 Processing chromosome scaffold794 INFO [2014-03-08 06:16:11,136] [Preprocessor.java:241] [main] Processing chromosome scaffold795 Processing chromosome scaffold795 INFO [2014-03-08 06:16:11,162] [Preprocessor.java:241] [main] Processing chromosome scaffold796 Processing chromosome scaffold796 INFO [2014-03-08 06:16:11,192] [Preprocessor.java:241] [main] Processing chromosome scaffold797 Processing chromosome scaffold797 INFO [2014-03-08 06:16:11,203] [Preprocessor.java:241] [main] Processing chromosome scaffold799 Processing chromosome scaffold799 INFO [2014-03-08 06:16:11,238] [Preprocessor.java:241] [main] Processing chromosome scaffold8 Processing chromosome scaffold8 INFO [2014-03-08 06:16:11,268] [Preprocessor.java:241] [main] Processing chromosome scaffold80 Processing chromosome scaffold80 INFO [2014-03-08 06:16:11,281] [Preprocessor.java:241] [main] Processing chromosome scaffold801 Processing chromosome scaffold801 INFO [2014-03-08 06:16:11,399] [Preprocessor.java:241] [main] Processing chromosome scaffold802 Processing chromosome scaffold802 INFO [2014-03-08 06:16:11,500] [Preprocessor.java:241] [main] Processing chromosome scaffold803 Processing chromosome scaffold803 INFO [2014-03-08 06:16:11,523] [Preprocessor.java:241] [main] Processing chromosome scaffold804 Processing chromosome scaffold804 INFO [2014-03-08 06:16:11,553] [Preprocessor.java:241] [main] Processing chromosome scaffold805 Processing chromosome scaffold805 INFO [2014-03-08 06:16:11,564] [Preprocessor.java:241] [main] Processing chromosome scaffold806 Processing chromosome scaffold806 INFO [2014-03-08 06:16:11,599] [Preprocessor.java:241] [main] Processing chromosome scaffold807 Processing chromosome scaffold807 INFO [2014-03-08 06:16:11,636] [Preprocessor.java:241] [main] Processing chromosome scaffold808 Processing chromosome scaffold808 INFO [2014-03-08 06:16:11,716] [Preprocessor.java:241] [main] Processing chromosome scaffold809 Processing chromosome scaffold809 INFO [2014-03-08 06:16:11,736] [Preprocessor.java:241] [main] Processing chromosome scaffold81 Processing chromosome scaffold81 INFO [2014-03-08 06:16:11,755] [Preprocessor.java:241] [main] Processing chromosome scaffold810 Processing chromosome scaffold810 INFO [2014-03-08 06:16:11,786] [Preprocessor.java:241] [main] Processing chromosome scaffold811 Processing chromosome scaffold811 INFO [2014-03-08 06:16:11,808] [Preprocessor.java:241] [main] Processing chromosome scaffold812 Processing chromosome scaffold812 INFO [2014-03-08 06:16:11,822] [Preprocessor.java:241] [main] Processing chromosome scaffold814 Processing chromosome scaffold814 INFO [2014-03-08 06:16:11,864] [Preprocessor.java:241] [main] Processing chromosome scaffold815 Processing chromosome scaffold815 INFO [2014-03-08 06:16:11,874] [Preprocessor.java:241] [main] Processing chromosome scaffold816 Processing chromosome scaffold816 INFO [2014-03-08 06:16:11,895] [Preprocessor.java:241] [main] Processing chromosome scaffold817 Processing chromosome scaffold817 INFO [2014-03-08 06:16:11,966] [Preprocessor.java:241] [main] Processing chromosome scaffold818 Processing chromosome scaffold818 INFO [2014-03-08 06:16:12,008] [Preprocessor.java:241] [main] Processing chromosome scaffold819 Processing chromosome scaffold819 INFO [2014-03-08 06:16:12,036] [Preprocessor.java:241] [main] Processing chromosome scaffold82 Processing chromosome scaffold82 INFO [2014-03-08 06:16:12,229] [Preprocessor.java:241] [main] Processing chromosome scaffold820 Processing chromosome scaffold820 INFO [2014-03-08 06:16:12,254] [Preprocessor.java:241] [main] Processing chromosome scaffold821 Processing chromosome scaffold821 INFO [2014-03-08 06:16:12,260] [Preprocessor.java:241] [main] Processing chromosome scaffold822 Processing chromosome scaffold822 INFO [2014-03-08 06:16:12,273] [Preprocessor.java:241] [main] Processing chromosome scaffold823 Processing chromosome scaffold823 INFO [2014-03-08 06:16:12,289] [Preprocessor.java:241] [main] Processing chromosome scaffold824 Processing chromosome scaffold824 INFO [2014-03-08 06:16:12,297] [Preprocessor.java:241] [main] Processing chromosome scaffold825 Processing chromosome scaffold825 INFO [2014-03-08 06:16:12,367] [Preprocessor.java:241] [main] Processing chromosome scaffold826 Processing chromosome scaffold826 INFO [2014-03-08 06:16:12,389] [Preprocessor.java:241] [main] Processing chromosome scaffold827 Processing chromosome scaffold827 INFO [2014-03-08 06:16:12,436] [Preprocessor.java:241] [main] Processing chromosome scaffold828 Processing chromosome scaffold828 INFO [2014-03-08 06:16:12,485] [Preprocessor.java:241] [main] Processing chromosome scaffold829 Processing chromosome scaffold829 INFO [2014-03-08 06:16:12,532] [Preprocessor.java:241] [main] Processing chromosome scaffold83 Processing chromosome scaffold83 INFO [2014-03-08 06:16:12,545] [Preprocessor.java:241] [main] Processing chromosome scaffold831 Processing chromosome scaffold831 INFO [2014-03-08 06:16:12,593] [Preprocessor.java:241] [main] Processing chromosome scaffold833 Processing chromosome scaffold833 INFO [2014-03-08 06:16:12,641] [Preprocessor.java:241] [main] Processing chromosome scaffold834 Processing chromosome scaffold834 INFO [2014-03-08 06:16:12,680] [Preprocessor.java:241] [main] Processing chromosome scaffold835 Processing chromosome scaffold835 .INFO [2014-03-08 06:16:12,762] [Preprocessor.java:241] [main] Processing chromosome scaffold836 Processing chromosome scaffold836 INFO [2014-03-08 06:16:12,818] [Preprocessor.java:241] [main] Processing chromosome scaffold837 Processing chromosome scaffold837 INFO [2014-03-08 06:16:12,879] [Preprocessor.java:241] [main] Processing chromosome scaffold838 Processing chromosome scaffold838 INFO [2014-03-08 06:16:12,909] [Preprocessor.java:241] [main] Processing chromosome scaffold839 Processing chromosome scaffold839 INFO [2014-03-08 06:16:12,947] [Preprocessor.java:241] [main] Processing chromosome scaffold84 Processing chromosome scaffold84 INFO [2014-03-08 06:16:12,969] [Preprocessor.java:241] [main] Processing chromosome scaffold841 Processing chromosome scaffold841 INFO [2014-03-08 06:16:12,974] [Preprocessor.java:241] [main] Processing chromosome scaffold842 Processing chromosome scaffold842 INFO [2014-03-08 06:16:12,983] [Preprocessor.java:241] [main] Processing chromosome scaffold843 Processing chromosome scaffold843 INFO [2014-03-08 06:16:13,007] [Preprocessor.java:241] [main] Processing chromosome scaffold844 Processing chromosome scaffold844 INFO [2014-03-08 06:16:13,012] [Preprocessor.java:241] [main] Processing chromosome scaffold845 Processing chromosome scaffold845 INFO [2014-03-08 06:16:13,027] [Preprocessor.java:241] [main] Processing chromosome scaffold847 Processing chromosome scaffold847 INFO [2014-03-08 06:16:13,115] [Preprocessor.java:241] [main] Processing chromosome scaffold848 Processing chromosome scaffold848 INFO [2014-03-08 06:16:13,119] [Preprocessor.java:241] [main] Processing chromosome scaffold849 Processing chromosome scaffold849 INFO [2014-03-08 06:16:13,123] [Preprocessor.java:241] [main] Processing chromosome scaffold85 Processing chromosome scaffold85 INFO [2014-03-08 06:16:13,252] [Preprocessor.java:241] [main] Processing chromosome scaffold850 Processing chromosome scaffold850 INFO [2014-03-08 06:16:13,302] [Preprocessor.java:241] [main] Processing chromosome scaffold852 Processing chromosome scaffold852 INFO [2014-03-08 06:16:13,352] [Preprocessor.java:241] [main] Processing chromosome scaffold853 Processing chromosome scaffold853 INFO [2014-03-08 06:16:13,464] [Preprocessor.java:241] [main] Processing chromosome scaffold854 Processing chromosome scaffold854 INFO [2014-03-08 06:16:13,591] [Preprocessor.java:241] [main] Processing chromosome scaffold855 Processing chromosome scaffold855 INFO [2014-03-08 06:16:13,610] [Preprocessor.java:241] [main] Processing chromosome scaffold857 Processing chromosome scaffold857 INFO [2014-03-08 06:16:13,665] [Preprocessor.java:241] [main] Processing chromosome scaffold858 Processing chromosome scaffold858 INFO [2014-03-08 06:16:13,716] [Preprocessor.java:241] [main] Processing chromosome scaffold859 Processing chromosome scaffold859 INFO [2014-03-08 06:16:13,731] [Preprocessor.java:241] [main] Processing chromosome scaffold86 Processing chromosome scaffold86 INFO [2014-03-08 06:16:14,013] [Preprocessor.java:241] [main] Processing chromosome scaffold860 Processing chromosome scaffold860 INFO [2014-03-08 06:16:14,033] [Preprocessor.java:241] [main] Processing chromosome scaffold862 Processing chromosome scaffold862 INFO [2014-03-08 06:16:14,047] [Preprocessor.java:241] [main] Processing chromosome scaffold863 Processing chromosome scaffold863 INFO [2014-03-08 06:16:14,051] [Preprocessor.java:241] [main] Processing chromosome scaffold864 Processing chromosome scaffold864 INFO [2014-03-08 06:16:14,063] [Preprocessor.java:241] [main] Processing chromosome scaffold865 Processing chromosome scaffold865 INFO [2014-03-08 06:16:14,074] [Preprocessor.java:241] [main] Processing chromosome scaffold866 Processing chromosome scaffold866 INFO [2014-03-08 06:16:14,100] [Preprocessor.java:241] [main] Processing chromosome scaffold867 Processing chromosome scaffold867 INFO [2014-03-08 06:16:14,272] [Preprocessor.java:241] [main] Processing chromosome scaffold868 Processing chromosome scaffold868 INFO [2014-03-08 06:16:14,325] [Preprocessor.java:241] [main] Processing chromosome scaffold87 Processing chromosome scaffold87 INFO [2014-03-08 06:16:14,343] [Preprocessor.java:241] [main] Processing chromosome scaffold870 Processing chromosome scaffold870 INFO [2014-03-08 06:16:14,392] [Preprocessor.java:241] [main] Processing chromosome scaffold872 Processing chromosome scaffold872 INFO [2014-03-08 06:16:14,442] [Preprocessor.java:241] [main] Processing chromosome scaffold873 Processing chromosome scaffold873 INFO [2014-03-08 06:16:14,514] [Preprocessor.java:241] [main] Processing chromosome scaffold874 Processing chromosome scaffold874 INFO [2014-03-08 06:16:14,563] [Preprocessor.java:241] [main] Processing chromosome scaffold875 Processing chromosome scaffold875 INFO [2014-03-08 06:16:14,578] [Preprocessor.java:241] [main] Processing chromosome scaffold876 Processing chromosome scaffold876 INFO [2014-03-08 06:16:14,596] [Preprocessor.java:241] [main] Processing chromosome scaffold878 Processing chromosome scaffold878 INFO [2014-03-08 06:16:14,602] [Preprocessor.java:241] [main] Processing chromosome scaffold879 Processing chromosome scaffold879 INFO [2014-03-08 06:16:14,615] [Preprocessor.java:241] [main] Processing chromosome scaffold88 Processing chromosome scaffold88 INFO [2014-03-08 06:16:14,651] [Preprocessor.java:241] [main] Processing chromosome scaffold880 Processing chromosome scaffold880 INFO [2014-03-08 06:16:14,807] [Preprocessor.java:241] [main] Processing chromosome scaffold881 Processing chromosome scaffold881 INFO [2014-03-08 06:16:14,814] [Preprocessor.java:241] [main] Processing chromosome scaffold883 Processing chromosome scaffold883 INFO [2014-03-08 06:16:14,836] [Preprocessor.java:241] [main] Processing chromosome scaffold884 Processing chromosome scaffold884 INFO [2014-03-08 06:16:14,892] [Preprocessor.java:241] [main] Processing chromosome scaffold885 Processing chromosome scaffold885 INFO [2014-03-08 06:16:15,058] [Preprocessor.java:241] [main] Processing chromosome scaffold886 Processing chromosome scaffold886 INFO [2014-03-08 06:16:15,074] [Preprocessor.java:241] [main] Processing chromosome scaffold888 Processing chromosome scaffold888 INFO [2014-03-08 06:16:15,180] [Preprocessor.java:241] [main] Processing chromosome scaffold889 Processing chromosome scaffold889 INFO [2014-03-08 06:16:15,199] [Preprocessor.java:241] [main] Processing chromosome scaffold89 Processing chromosome scaffold89 INFO [2014-03-08 06:16:15,216] [Preprocessor.java:241] [main] Processing chromosome scaffold890 Processing chromosome scaffold890 INFO [2014-03-08 06:16:15,384] [Preprocessor.java:241] [main] Processing chromosome scaffold891 Processing chromosome scaffold891 INFO [2014-03-08 06:16:15,437] [Preprocessor.java:241] [main] Processing chromosome scaffold892 Processing chromosome scaffold892 INFO [2014-03-08 06:16:15,497] [Preprocessor.java:241] [main] Processing chromosome scaffold893 Processing chromosome scaffold893 INFO [2014-03-08 06:16:15,533] [Preprocessor.java:241] [main] Processing chromosome scaffold894 Processing chromosome scaffold894 INFO [2014-03-08 06:16:15,575] [Preprocessor.java:241] [main] Processing chromosome scaffold895 Processing chromosome scaffold895 INFO [2014-03-08 06:16:15,624] [Preprocessor.java:241] [main] Processing chromosome scaffold896 Processing chromosome scaffold896 INFO [2014-03-08 06:16:15,728] [Preprocessor.java:241] [main] Processing chromosome scaffold898 Processing chromosome scaffold898 INFO [2014-03-08 06:16:15,752] [Preprocessor.java:241] [main] Processing chromosome scaffold899 Processing chromosome scaffold899 INFO [2014-03-08 06:16:15,773] [Preprocessor.java:241] [main] Processing chromosome scaffold9 Processing chromosome scaffold9 INFO [2014-03-08 06:16:15,795] [Preprocessor.java:241] [main] Processing chromosome scaffold90 Processing chromosome scaffold90 INFO [2014-03-08 06:16:15,826] [Preprocessor.java:241] [main] Processing chromosome scaffold900 Processing chromosome scaffold900 INFO [2014-03-08 06:16:15,835] [Preprocessor.java:241] [main] Processing chromosome scaffold901 Processing chromosome scaffold901 INFO [2014-03-08 06:16:15,839] [Preprocessor.java:241] [main] Processing chromosome scaffold903 Processing chromosome scaffold903 INFO [2014-03-08 06:16:15,853] [Preprocessor.java:241] [main] Processing chromosome scaffold904 Processing chromosome scaffold904 INFO [2014-03-08 06:16:15,869] [Preprocessor.java:241] [main] Processing chromosome scaffold905 Processing chromosome scaffold905 INFO [2014-03-08 06:16:15,891] [Preprocessor.java:241] [main] Processing chromosome scaffold907 Processing chromosome scaffold907 INFO [2014-03-08 06:16:15,903] [Preprocessor.java:241] [main] Processing chromosome scaffold908 Processing chromosome scaffold908 INFO [2014-03-08 06:16:15,974] [Preprocessor.java:241] [main] Processing chromosome scaffold91 Processing chromosome scaffold91 INFO [2014-03-08 06:16:16,001] [Preprocessor.java:241] [main] Processing chromosome scaffold910 Processing chromosome scaffold910 INFO [2014-03-08 06:16:16,024] [Preprocessor.java:241] [main] Processing chromosome scaffold911 Processing chromosome scaffold911 INFO [2014-03-08 06:16:16,065] [Preprocessor.java:241] [main] Processing chromosome scaffold912 Processing chromosome scaffold912 INFO [2014-03-08 06:16:16,078] [Preprocessor.java:241] [main] Processing chromosome scaffold913 Processing chromosome scaffold913 INFO [2014-03-08 06:16:16,097] [Preprocessor.java:241] [main] Processing chromosome scaffold914 Processing chromosome scaffold914 .INFO [2014-03-08 06:16:16,270] [Preprocessor.java:241] [main] Processing chromosome scaffold915 Processing chromosome scaffold915 INFO [2014-03-08 06:16:16,295] [Preprocessor.java:241] [main] Processing chromosome scaffold916 Processing chromosome scaffold916 INFO [2014-03-08 06:16:16,344] [Preprocessor.java:241] [main] Processing chromosome scaffold917 Processing chromosome scaffold917 INFO [2014-03-08 06:16:16,407] [Preprocessor.java:241] [main] Processing chromosome scaffold919 Processing chromosome scaffold919 INFO [2014-03-08 06:16:16,426] [Preprocessor.java:241] [main] Processing chromosome scaffold922 Processing chromosome scaffold922 INFO [2014-03-08 06:16:16,467] [Preprocessor.java:241] [main] Processing chromosome scaffold923 Processing chromosome scaffold923 INFO [2014-03-08 06:16:16,511] [Preprocessor.java:241] [main] Processing chromosome scaffold924 Processing chromosome scaffold924 INFO [2014-03-08 06:16:16,527] [Preprocessor.java:241] [main] Processing chromosome scaffold925 Processing chromosome scaffold925 INFO [2014-03-08 06:16:16,575] [Preprocessor.java:241] [main] Processing chromosome scaffold926 Processing chromosome scaffold926 INFO [2014-03-08 06:16:16,593] [Preprocessor.java:241] [main] Processing chromosome scaffold928 Processing chromosome scaffold928 INFO [2014-03-08 06:16:16,618] [Preprocessor.java:241] [main] Processing chromosome scaffold929 Processing chromosome scaffold929 INFO [2014-03-08 06:16:16,678] [Preprocessor.java:241] [main] Processing chromosome scaffold93 Processing chromosome scaffold93 INFO [2014-03-08 06:16:16,712] [Preprocessor.java:241] [main] Processing chromosome scaffold930 Processing chromosome scaffold930 INFO [2014-03-08 06:16:16,818] [Preprocessor.java:241] [main] Processing chromosome scaffold931 Processing chromosome scaffold931 INFO [2014-03-08 06:16:16,834] [Preprocessor.java:241] [main] Processing chromosome scaffold932 Processing chromosome scaffold932 INFO [2014-03-08 06:16:16,906] [Preprocessor.java:241] [main] Processing chromosome scaffold933 Processing chromosome scaffold933 INFO [2014-03-08 06:16:17,020] [Preprocessor.java:241] [main] Processing chromosome scaffold934 Processing chromosome scaffold934 INFO [2014-03-08 06:16:17,098] [Preprocessor.java:241] [main] Processing chromosome scaffold935 Processing chromosome scaffold935 INFO [2014-03-08 06:16:17,115] [Preprocessor.java:241] [main] Processing chromosome scaffold936 Processing chromosome scaffold936 INFO [2014-03-08 06:16:17,120] [Preprocessor.java:241] [main] Processing chromosome scaffold937 Processing chromosome scaffold937 INFO [2014-03-08 06:16:17,127] [Preprocessor.java:241] [main] Processing chromosome scaffold938 Processing chromosome scaffold938 INFO [2014-03-08 06:16:17,140] [Preprocessor.java:241] [main] Processing chromosome scaffold939 Processing chromosome scaffold939 INFO [2014-03-08 06:16:17,188] [Preprocessor.java:241] [main] Processing chromosome scaffold94 Processing chromosome scaffold94 INFO [2014-03-08 06:16:17,250] [Preprocessor.java:241] [main] Processing chromosome scaffold940 Processing chromosome scaffold940 INFO [2014-03-08 06:16:17,269] [Preprocessor.java:241] [main] Processing chromosome scaffold941 Processing chromosome scaffold941 INFO [2014-03-08 06:16:17,292] [Preprocessor.java:241] [main] Processing chromosome scaffold942 Processing chromosome scaffold942 INFO [2014-03-08 06:16:17,444] [Preprocessor.java:241] [main] Processing chromosome scaffold943 Processing chromosome scaffold943 INFO [2014-03-08 06:16:17,463] [Preprocessor.java:241] [main] Processing chromosome scaffold944 Processing chromosome scaffold944 INFO [2014-03-08 06:16:17,480] [Preprocessor.java:241] [main] Processing chromosome scaffold946 Processing chromosome scaffold946 INFO [2014-03-08 06:16:17,489] [Preprocessor.java:241] [main] Processing chromosome scaffold947 Processing chromosome scaffold947 INFO [2014-03-08 06:16:17,504] [Preprocessor.java:241] [main] Processing chromosome scaffold948 Processing chromosome scaffold948 INFO [2014-03-08 06:16:17,607] [Preprocessor.java:241] [main] Processing chromosome scaffold949 Processing chromosome scaffold949 INFO [2014-03-08 06:16:17,621] [Preprocessor.java:241] [main] Processing chromosome scaffold950 Processing chromosome scaffold950 INFO [2014-03-08 06:16:17,745] [Preprocessor.java:241] [main] Processing chromosome scaffold951 Processing chromosome scaffold951 INFO [2014-03-08 06:16:17,852] [Preprocessor.java:241] [main] Processing chromosome scaffold952 Processing chromosome scaffold952 INFO [2014-03-08 06:16:17,867] [Preprocessor.java:241] [main] Processing chromosome scaffold953 Processing chromosome scaffold953 INFO [2014-03-08 06:16:17,878] [Preprocessor.java:241] [main] Processing chromosome scaffold954 Processing chromosome scaffold954 INFO [2014-03-08 06:16:17,928] [Preprocessor.java:241] [main] Processing chromosome scaffold955 Processing chromosome scaffold955 INFO [2014-03-08 06:16:18,041] [Preprocessor.java:241] [main] Processing chromosome scaffold958 Processing chromosome scaffold958 INFO [2014-03-08 06:16:18,068] [Preprocessor.java:241] [main] Processing chromosome scaffold959 Processing chromosome scaffold959 INFO [2014-03-08 06:16:18,112] [Preprocessor.java:241] [main] Processing chromosome scaffold96 Processing chromosome scaffold96 INFO [2014-03-08 06:16:18,137] [Preprocessor.java:241] [main] Processing chromosome scaffold960 Processing chromosome scaffold960 INFO [2014-03-08 06:16:18,168] [Preprocessor.java:241] [main] Processing chromosome scaffold961 Processing chromosome scaffold961 INFO [2014-03-08 06:16:18,171] [Preprocessor.java:241] [main] Processing chromosome scaffold962 Processing chromosome scaffold962 INFO [2014-03-08 06:16:18,332] [Preprocessor.java:241] [main] Processing chromosome scaffold963 Processing chromosome scaffold963 INFO [2014-03-08 06:16:18,391] [Preprocessor.java:241] [main] Processing chromosome scaffold964 Processing chromosome scaffold964 INFO [2014-03-08 06:16:18,432] [Preprocessor.java:241] [main] Processing chromosome scaffold966 Processing chromosome scaffold966 INFO [2014-03-08 06:16:18,439] [Preprocessor.java:241] [main] Processing chromosome scaffold967 Processing chromosome scaffold967 INFO [2014-03-08 06:16:18,486] [Preprocessor.java:241] [main] Processing chromosome scaffold968 Processing chromosome scaffold968 INFO [2014-03-08 06:16:18,552] [Preprocessor.java:241] [main] Processing chromosome scaffold969 Processing chromosome scaffold969 INFO [2014-03-08 06:16:18,606] [Preprocessor.java:241] [main] Processing chromosome scaffold97 Processing chromosome scaffold97 INFO [2014-03-08 06:16:18,632] [Preprocessor.java:241] [main] Processing chromosome scaffold970 Processing chromosome scaffold970 INFO [2014-03-08 06:16:18,643] [Preprocessor.java:241] [main] Processing chromosome scaffold971 Processing chromosome scaffold971 INFO [2014-03-08 06:16:18,674] [Preprocessor.java:241] [main] Processing chromosome scaffold973 Processing chromosome scaffold973 INFO [2014-03-08 06:16:18,829] [Preprocessor.java:241] [main] Processing chromosome scaffold974 Processing chromosome scaffold974 INFO [2014-03-08 06:16:18,849] [Preprocessor.java:241] [main] Processing chromosome scaffold975 Processing chromosome scaffold975 INFO [2014-03-08 06:16:18,928] [Preprocessor.java:241] [main] Processing chromosome scaffold976 Processing chromosome scaffold976 INFO [2014-03-08 06:16:18,965] [Preprocessor.java:241] [main] Processing chromosome scaffold977 Processing chromosome scaffold977 INFO [2014-03-08 06:16:19,040] [Preprocessor.java:241] [main] Processing chromosome scaffold979 Processing chromosome scaffold979 INFO [2014-03-08 06:16:19,049] [Preprocessor.java:241] [main] Processing chromosome scaffold98 Processing chromosome scaffold98 INFO [2014-03-08 06:16:19,093] [Preprocessor.java:241] [main] Processing chromosome scaffold980 Processing chromosome scaffold980 INFO [2014-03-08 06:16:19,237] [Preprocessor.java:241] [main] Processing chromosome scaffold982 Processing chromosome scaffold982 INFO [2014-03-08 06:16:19,246] [Preprocessor.java:241] [main] Processing chromosome scaffold983 Processing chromosome scaffold983 INFO [2014-03-08 06:16:19,304] [Preprocessor.java:241] [main] Processing chromosome scaffold984 Processing chromosome scaffold984 INFO [2014-03-08 06:16:19,314] [Preprocessor.java:241] [main] Processing chromosome scaffold985 Processing chromosome scaffold985 INFO [2014-03-08 06:16:19,367] [Preprocessor.java:241] [main] Processing chromosome scaffold986 Processing chromosome scaffold986 INFO [2014-03-08 06:16:19,396] [Preprocessor.java:241] [main] Processing chromosome scaffold987 Processing chromosome scaffold987 INFO [2014-03-08 06:16:19,505] [Preprocessor.java:241] [main] Processing chromosome scaffold988 Processing chromosome scaffold988 INFO [2014-03-08 06:16:19,511] [Preprocessor.java:241] [main] Processing chromosome scaffold99 Processing chromosome scaffold99 INFO [2014-03-08 06:16:19,586] [Preprocessor.java:241] [main] Processing chromosome scaffold990 Processing chromosome scaffold990 INFO [2014-03-08 06:16:19,597] [Preprocessor.java:241] [main] Processing chromosome scaffold991 Processing chromosome scaffold991 INFO [2014-03-08 06:16:19,606] [Preprocessor.java:241] [main] Processing chromosome scaffold992 Processing chromosome scaffold992 INFO [2014-03-08 06:16:19,666] [Preprocessor.java:241] [main] Processing chromosome scaffold993 Processing chromosome scaffold993 INFO [2014-03-08 06:16:19,741] [Preprocessor.java:241] [main] Processing chromosome scaffold994 Processing chromosome scaffold994 INFO [2014-03-08 06:16:19,750] [Preprocessor.java:241] [main] Processing chromosome scaffold995 Processing chromosome scaffold995 INFO [2014-03-08 06:16:19,753] [Preprocessor.java:241] [main] Processing chromosome scaffold997 Processing chromosome scaffold997 INFO [2014-03-08 06:16:19,760] [Preprocessor.java:241] [main] Processing chromosome scaffold998 Processing chromosome scaffold998 INFO [2014-03-08 06:16:19,797] [Preprocessor.java:241] [main] Processing chromosome scaffold999 Processing chromosome scaffold999 INFO [2014-03-08 06:16:20,637] [TDFWriter.java:304] [main] Group idx: 1 Group idx: 1 100.0% Done
Mgo1.3¶
In [8]:
#changed quality score metric to 1.3-1.8 from 1.9 to see if data changes.
In [10]:
folder="RNAseq2bedgraph_Mgo1.3-2014-03-07-14-06-07.430"
id="Mgo13"
In [11]:
!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}
!imv accepted_hits.bam z{id}_tophat.bam
!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph
!cd /Volumes/web/cnidarian/
!iget z{id}_th_genomecov.bedgraph
!iget z{id}_tophat.bam
!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes
!iput z{id}_th_genomecov.bedgraph.tdf
INFO [2014-03-08 06:23:00,600] [IgvTools.java:613] [main] toTDF. File = zMgo13_th_genomecov.bedgraph toTDF. File = zMgo13_th_genomecov.bedgraph INFO [2014-03-08 06:23:00,605] [IgvTools.java:614] [main] Max zoom = 7 Max zoom = 7 INFO [2014-03-08 06:23:00,606] [IgvTools.java:622] [main] Window functions: mean Window functions: mean INFO [2014-03-08 06:23:00,617] [GenomeManager.java:130] [main] Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes INFO [2014-03-08 06:23:01,054] [DirectoryManager.java:149] [main] IGV Directory: /Users/sr320/igv IGV Directory: /Users/sr320/igv INFO [2014-03-08 06:23:01,075] [GenomeManager.java:174] [main] Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03 Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03 INFO [2014-03-08 06:23:01,190] [Preprocessor.java:241] [main] Processing chromosome C1 Processing chromosome C1 INFO [2014-03-08 06:23:01,485] [Preprocessor.java:241] [main] Processing chromosome C10015 Processing chromosome C10015 INFO [2014-03-08 06:23:02,010] [Preprocessor.java:241] [main] Processing chromosome C10033 Processing chromosome C10033 INFO [2014-03-08 06:23:02,331] [Preprocessor.java:241] [main] Processing chromosome C10043 Processing chromosome C10043 INFO [2014-03-08 06:23:02,380] [Preprocessor.java:241] [main] Processing chromosome C10047 Processing chromosome C10047 INFO [2014-03-08 06:23:02,557] [Preprocessor.java:241] [main] Processing chromosome C10049 Processing chromosome C10049 INFO [2014-03-08 06:23:02,601] [Preprocessor.java:241] [main] Processing chromosome C10057 Processing chromosome C10057 INFO [2014-03-08 06:23:02,664] [Preprocessor.java:241] [main] Processing chromosome C1007 Processing chromosome C1007 INFO [2014-03-08 06:23:02,886] [Preprocessor.java:241] [main] Processing chromosome C10089 Processing chromosome C10089 INFO [2014-03-08 06:23:02,941] [Preprocessor.java:241] [main] Processing chromosome C10091 Processing chromosome C10091 INFO [2014-03-08 06:23:03,158] [Preprocessor.java:241] [main] Processing chromosome C10097 Processing chromosome C10097 INFO [2014-03-08 06:23:03,207] [Preprocessor.java:241] [main] Processing chromosome C10109 Processing chromosome C10109 INFO [2014-03-08 06:23:03,312] [Preprocessor.java:241] [main] Processing chromosome C10131 Processing chromosome C10131 INFO [2014-03-08 06:23:03,344] [Preprocessor.java:241] [main] Processing chromosome C10157 Processing chromosome C10157 INFO [2014-03-08 06:23:03,545] [Preprocessor.java:241] [main] Processing chromosome C10163 Processing chromosome C10163 INFO [2014-03-08 06:23:03,638] [Preprocessor.java:241] [main] Processing chromosome C10171 Processing chromosome C10171 INFO [2014-03-08 06:23:03,758] [Preprocessor.java:241] [main] Processing chromosome C10183 Processing chromosome C10183 INFO [2014-03-08 06:23:03,904] [Preprocessor.java:241] [main] Processing chromosome C10189 Processing chromosome C10189 INFO [2014-03-08 06:23:04,037] [Preprocessor.java:241] [main] Processing chromosome C10241 Processing chromosome C10241 INFO [2014-03-08 06:23:04,112] [Preprocessor.java:241] [main] Processing chromosome C10261 Processing chromosome C10261 INFO [2014-03-08 06:23:04,208] [Preprocessor.java:241] [main] Processing chromosome C10263 Processing chromosome C10263 INFO [2014-03-08 06:23:04,291] [Preprocessor.java:241] [main] Processing chromosome C10271 Processing chromosome C10271 INFO [2014-03-08 06:23:04,401] [Preprocessor.java:241] [main] Processing chromosome C1033 Processing chromosome C1033 INFO [2014-03-08 06:23:04,442] [Preprocessor.java:241] [main] Processing chromosome C10345 Processing chromosome C10345 INFO [2014-03-08 06:23:04,531] [Preprocessor.java:241] [main] Processing chromosome C10353 Processing chromosome C10353 INFO [2014-03-08 06:23:04,555] [Preprocessor.java:241] [main] Processing chromosome C10355 Processing chromosome C10355 INFO [2014-03-08 06:23:04,614] [Preprocessor.java:241] [main] Processing chromosome C10403 Processing chromosome C10403 INFO [2014-03-08 06:23:04,640] [Preprocessor.java:241] [main] Processing chromosome C10405 Processing chromosome C10405 INFO [2014-03-08 06:23:04,748] [Preprocessor.java:241] [main] Processing chromosome C10409 Processing chromosome C10409 INFO [2014-03-08 06:23:04,800] [Preprocessor.java:241] [main] Processing chromosome C10411 Processing chromosome C10411 INFO [2014-03-08 06:23:04,823] [Preprocessor.java:241] [main] Processing chromosome C10421 Processing chromosome C10421 INFO [2014-03-08 06:23:04,860] [Preprocessor.java:241] [main] Processing chromosome C10425 Processing chromosome C10425 INFO [2014-03-08 06:23:04,913] [Preprocessor.java:241] [main] Processing chromosome C10431 Processing chromosome C10431 INFO [2014-03-08 06:23:04,970] [Preprocessor.java:241] [main] Processing chromosome C10437 Processing chromosome C10437 INFO [2014-03-08 06:23:05,035] [Preprocessor.java:241] [main] Processing chromosome C10459 Processing chromosome C10459 INFO [2014-03-08 06:23:05,150] [Preprocessor.java:241] [main] Processing chromosome C10477 Processing chromosome C10477 INFO [2014-03-08 06:23:05,241] [Preprocessor.java:241] [main] Processing chromosome C10487 Processing chromosome C10487 INFO [2014-03-08 06:23:05,287] [Preprocessor.java:241] [main] Processing chromosome C10495 Processing chromosome C10495 INFO [2014-03-08 06:23:05,333] [Preprocessor.java:241] [main] Processing chromosome C10529 Processing chromosome C10529 INFO [2014-03-08 06:23:05,354] [Preprocessor.java:241] [main] Processing chromosome C10535 Processing chromosome C10535 INFO [2014-03-08 06:23:05,433] [Preprocessor.java:241] [main] Processing chromosome C10549 Processing chromosome C10549 INFO [2014-03-08 06:23:05,455] [Preprocessor.java:241] [main] Processing chromosome C1057 Processing chromosome C1057 INFO [2014-03-08 06:23:05,556] [Preprocessor.java:241] [main] Processing chromosome C10575 Processing chromosome C10575 INFO [2014-03-08 06:23:05,617] [Preprocessor.java:241] [main] Processing chromosome C10579 Processing chromosome C10579 INFO [2014-03-08 06:23:05,663] [Preprocessor.java:241] [main] Processing chromosome C10585 Processing chromosome C10585 INFO [2014-03-08 06:23:05,710] [Preprocessor.java:241] [main] Processing chromosome C10587 Processing chromosome C10587 INFO [2014-03-08 06:23:05,753] [Preprocessor.java:241] [main] Processing chromosome C10591 Processing chromosome C10591 INFO [2014-03-08 06:23:05,796] [Preprocessor.java:241] [main] Processing chromosome C10599 Processing chromosome C10599 INFO [2014-03-08 06:23:05,834] [Preprocessor.java:241] [main] Processing chromosome C10609 Processing chromosome C10609 INFO [2014-03-08 06:23:05,893] [Preprocessor.java:241] [main] Processing chromosome C10613 Processing chromosome C10613 INFO [2014-03-08 06:23:05,913] [Preprocessor.java:241] [main] Processing chromosome C10619 Processing chromosome C10619 INFO [2014-03-08 06:23:06,030] [Preprocessor.java:241] [main] Processing chromosome C10621 Processing chromosome C10621 INFO [2014-03-08 06:23:06,109] [Preprocessor.java:241] [main] Processing chromosome C10637 Processing chromosome C10637 INFO [2014-03-08 06:23:06,133] [Preprocessor.java:241] [main] Processing chromosome C10655 Processing chromosome C10655 INFO [2014-03-08 06:23:06,227] [Preprocessor.java:241] [main] Processing chromosome C10677 Processing chromosome C10677 INFO [2014-03-08 06:23:06,285] [Preprocessor.java:241] [main] Processing chromosome C10679 Processing chromosome C10679 INFO [2014-03-08 06:23:06,315] [Preprocessor.java:241] [main] Processing chromosome C10687 Processing chromosome C10687 INFO [2014-03-08 06:23:06,359] [Preprocessor.java:241] [main] Processing chromosome C10693 Processing chromosome C10693 INFO [2014-03-08 06:23:06,434] [Preprocessor.java:241] [main] Processing chromosome C10695 Processing chromosome C10695 INFO [2014-03-08 06:23:06,560] [Preprocessor.java:241] [main] Processing chromosome C10699 Processing chromosome C10699 INFO [2014-03-08 06:23:06,618] [Preprocessor.java:241] [main] Processing chromosome C10741 Processing chromosome C10741 INFO [2014-03-08 06:23:06,647] [Preprocessor.java:241] [main] Processing chromosome C10759 Processing chromosome C10759 INFO [2014-03-08 06:23:06,682] [Preprocessor.java:241] [main] Processing chromosome C10765 Processing chromosome C10765 INFO [2014-03-08 06:23:06,760] [Preprocessor.java:241] [main] Processing chromosome C10775 Processing chromosome C10775 INFO [2014-03-08 06:23:06,825] [Preprocessor.java:241] [main] Processing chromosome C10803 Processing chromosome C10803 INFO [2014-03-08 06:23:06,850] [Preprocessor.java:241] [main] Processing chromosome C1081 Processing chromosome C1081 INFO [2014-03-08 06:23:06,936] [Preprocessor.java:241] [main] Processing chromosome C10811 Processing chromosome C10811 INFO [2014-03-08 06:23:06,996] [Preprocessor.java:241] [main] Processing chromosome C10819 Processing chromosome C10819 INFO [2014-03-08 06:23:07,132] [Preprocessor.java:241] [main] Processing chromosome C10821 Processing chromosome C10821 INFO [2014-03-08 06:23:07,180] [Preprocessor.java:241] [main] Processing chromosome C10829 Processing chromosome C10829 INFO [2014-03-08 06:23:07,249] [Preprocessor.java:241] [main] Processing chromosome C10833 Processing chromosome C10833 INFO [2014-03-08 06:23:07,291] [Preprocessor.java:241] [main] Processing chromosome C10837 Processing chromosome C10837 INFO [2014-03-08 06:23:07,315] [Preprocessor.java:241] [main] Processing chromosome C10871 Processing chromosome C10871 INFO [2014-03-08 06:23:07,385] [Preprocessor.java:241] [main] Processing chromosome C10881 Processing chromosome C10881 INFO [2014-03-08 06:23:07,439] [Preprocessor.java:241] [main] Processing chromosome C10897 Processing chromosome C10897 INFO [2014-03-08 06:23:07,470] [Preprocessor.java:241] [main] Processing chromosome C10901 Processing chromosome C10901 INFO [2014-03-08 06:23:07,551] [Preprocessor.java:241] [main] Processing chromosome C10905 Processing chromosome C10905 INFO [2014-03-08 06:23:07,654] [Preprocessor.java:241] [main] Processing chromosome C10941 Processing chromosome C10941 INFO [2014-03-08 06:23:07,701] [Preprocessor.java:241] [main] Processing chromosome C10947 Processing chromosome C10947 INFO [2014-03-08 06:23:07,762] [Preprocessor.java:241] [main] Processing chromosome C10955 Processing chromosome C10955 INFO [2014-03-08 06:23:07,813] [Preprocessor.java:241] [main] Processing chromosome C10959 Processing chromosome C10959 INFO [2014-03-08 06:23:07,877] [Preprocessor.java:241] [main] Processing chromosome C10961 Processing chromosome C10961 INFO [2014-03-08 06:23:07,898] [Preprocessor.java:241] [main] Processing chromosome C10963 Processing chromosome C10963 INFO [2014-03-08 06:23:07,966] [Preprocessor.java:241] [main] Processing chromosome C10967 Processing chromosome C10967 INFO [2014-03-08 06:23:08,006] [Preprocessor.java:241] [main] Processing chromosome C10999 Processing chromosome C10999 INFO [2014-03-08 06:23:08,053] [Preprocessor.java:241] [main] Processing chromosome C11001 Processing chromosome C11001 INFO [2014-03-08 06:23:08,109] [Preprocessor.java:241] [main] Processing chromosome C11027 Processing chromosome C11027 INFO [2014-03-08 06:23:08,202] [Preprocessor.java:241] [main] Processing chromosome C11031 Processing chromosome C11031 INFO [2014-03-08 06:23:08,246] [Preprocessor.java:241] [main] Processing chromosome C11057 Processing chromosome C11057 INFO [2014-03-08 06:23:08,296] [Preprocessor.java:241] [main] Processing chromosome C11061 Processing chromosome C11061 INFO [2014-03-08 06:23:08,365] [Preprocessor.java:241] [main] Processing chromosome C11065 Processing chromosome C11065 INFO [2014-03-08 06:23:08,411] [Preprocessor.java:241] [main] Processing chromosome C11081 Processing chromosome C11081 INFO [2014-03-08 06:23:08,462] [Preprocessor.java:241] [main] Processing chromosome C11083 Processing chromosome C11083 INFO [2014-03-08 06:23:08,511] [Preprocessor.java:241] [main] Processing chromosome C11085 Processing chromosome C11085 INFO [2014-03-08 06:23:08,551] [Preprocessor.java:241] [main] Processing chromosome C11095 Processing chromosome C11095 INFO [2014-03-08 06:23:08,575] [Preprocessor.java:241] [main] Processing chromosome C11125 Processing chromosome C11125 INFO [2014-03-08 06:23:08,638] [Preprocessor.java:241] [main] Processing chromosome C1113 Processing chromosome C1113 INFO [2014-03-08 06:23:08,684] [Preprocessor.java:241] [main] Processing chromosome C11133 Processing chromosome C11133 INFO [2014-03-08 06:23:08,787] [Preprocessor.java:241] [main] Processing chromosome C11143 Processing chromosome C11143 INFO [2014-03-08 06:23:08,823] [Preprocessor.java:241] [main] Processing chromosome C11175 Processing chromosome C11175 INFO [2014-03-08 06:23:08,919] [Preprocessor.java:241] [main] Processing chromosome C11177 Processing chromosome C11177 INFO [2014-03-08 06:23:08,959] [Preprocessor.java:241] [main] Processing chromosome C11191 Processing chromosome C11191 INFO [2014-03-08 06:23:09,054] [Preprocessor.java:241] [main] Processing chromosome C11193 Processing chromosome C11193 INFO [2014-03-08 06:23:09,107] [Preprocessor.java:241] [main] Processing chromosome C11207 Processing chromosome C11207 INFO [2014-03-08 06:23:09,176] [Preprocessor.java:241] [main] Processing chromosome C11211 Processing chromosome C11211 INFO [2014-03-08 06:23:09,220] [Preprocessor.java:241] [main] Processing chromosome C11215 Processing chromosome C11215 INFO [2014-03-08 06:23:09,272] [Preprocessor.java:241] [main] Processing chromosome C11223 Processing chromosome C11223 INFO [2014-03-08 06:23:09,304] [Preprocessor.java:241] [main] Processing chromosome C11227 Processing chromosome C11227 INFO [2014-03-08 06:23:09,398] [Preprocessor.java:241] [main] Processing chromosome C1123 Processing chromosome C1123 INFO [2014-03-08 06:23:09,573] [Preprocessor.java:241] [main] Processing chromosome C11268 Processing chromosome C11268 INFO [2014-03-08 06:23:09,601] [Preprocessor.java:241] [main] Processing chromosome C11270 Processing chromosome C11270 INFO [2014-03-08 06:23:09,650] [Preprocessor.java:241] [main] Processing chromosome C11278 Processing chromosome C11278 INFO [2014-03-08 06:23:09,705] [Preprocessor.java:241] [main] Processing chromosome C11282 Processing chromosome C11282 INFO [2014-03-08 06:23:09,734] [Preprocessor.java:241] [main] Processing chromosome C11288 Processing chromosome C11288 INFO [2014-03-08 06:23:09,800] [Preprocessor.java:241] [main] Processing chromosome C11292 Processing chromosome C11292 INFO [2014-03-08 06:23:09,851] [Preprocessor.java:241] [main] Processing chromosome C11302 Processing chromosome C11302 INFO [2014-03-08 06:23:09,877] [Preprocessor.java:241] [main] Processing chromosome C11304 Processing chromosome C11304 INFO [2014-03-08 06:23:09,976] [Preprocessor.java:241] [main] Processing chromosome C11350 Processing chromosome C11350 INFO [2014-03-08 06:23:10,145] [Preprocessor.java:241] [main] Processing chromosome C11352 Processing chromosome C11352 INFO [2014-03-08 06:23:10,264] [Preprocessor.java:241] [main] Processing chromosome C11358 Processing chromosome C11358 INFO [2014-03-08 06:23:10,412] [Preprocessor.java:241] [main] Processing chromosome C11366 Processing chromosome C11366 INFO [2014-03-08 06:23:10,465] [Preprocessor.java:241] [main] Processing chromosome C11372 Processing chromosome C11372 INFO [2014-03-08 06:23:10,545] [Preprocessor.java:241] [main] Processing chromosome C11400 Processing chromosome C11400 INFO [2014-03-08 06:23:10,631] [Preprocessor.java:241] [main] Processing chromosome C11402 Processing chromosome C11402 INFO [2014-03-08 06:23:10,740] [Preprocessor.java:241] [main] Processing chromosome C11408 Processing chromosome C11408 INFO [2014-03-08 06:23:10,816] [Preprocessor.java:241] [main] Processing chromosome C11410 Processing chromosome C11410 INFO [2014-03-08 06:23:10,873] [Preprocessor.java:241] [main] Processing chromosome C11416 Processing chromosome C11416 INFO [2014-03-08 06:23:10,939] [Preprocessor.java:241] [main] Processing chromosome C11422 Processing chromosome C11422 INFO [2014-03-08 06:23:11,018] [Preprocessor.java:241] [main] Processing chromosome C11428 Processing chromosome C11428 INFO [2014-03-08 06:23:11,075] [Preprocessor.java:241] [main] Processing chromosome C11468 Processing chromosome C11468 INFO [2014-03-08 06:23:11,132] [Preprocessor.java:241] [main] Processing chromosome C11474 Processing chromosome C11474 INFO [2014-03-08 06:23:11,193] [Preprocessor.java:241] [main] Processing chromosome C11476 Processing chromosome C11476 INFO [2014-03-08 06:23:11,232] [Preprocessor.java:241] [main] Processing chromosome C11478 Processing chromosome C11478 INFO [2014-03-08 06:23:11,280] [Preprocessor.java:241] [main] Processing chromosome C11488 Processing chromosome C11488 INFO [2014-03-08 06:23:11,350] [Preprocessor.java:241] [main] Processing chromosome C11490 Processing chromosome C11490 INFO [2014-03-08 06:23:11,422] [Preprocessor.java:241] [main] Processing chromosome C11496 Processing chromosome C11496 INFO [2014-03-08 06:23:11,534] [Preprocessor.java:241] [main] Processing chromosome C11500 Processing chromosome C11500 INFO [2014-03-08 06:23:11,573] [Preprocessor.java:241] [main] Processing chromosome C1151 Processing chromosome C1151 INFO [2014-03-08 06:23:11,648] [Preprocessor.java:241] [main] Processing chromosome C11532 Processing chromosome C11532 INFO [2014-03-08 06:23:11,702] [Preprocessor.java:241] [main] Processing chromosome C11540 Processing chromosome C11540 INFO [2014-03-08 06:23:11,738] [Preprocessor.java:241] [main] Processing chromosome C1155 Processing chromosome C1155 INFO [2014-03-08 06:23:11,789] [Preprocessor.java:241] [main] Processing chromosome C11552 Processing chromosome C11552 INFO [2014-03-08 06:23:11,871] [Preprocessor.java:241] [main] Processing chromosome C11558 Processing chromosome C11558 INFO [2014-03-08 06:23:11,955] [Preprocessor.java:241] [main] Processing chromosome C11560 Processing chromosome C11560 INFO [2014-03-08 06:23:12,049] [Preprocessor.java:241] [main] Processing chromosome C11568 Processing chromosome C11568 INFO [2014-03-08 06:23:12,104] [Preprocessor.java:241] [main] Processing chromosome C1157 Processing chromosome C1157 INFO [2014-03-08 06:23:12,153] [Preprocessor.java:241] [main] Processing chromosome C11570 Processing chromosome C11570 INFO [2014-03-08 06:23:12,233] [Preprocessor.java:241] [main] Processing chromosome C11572 Processing chromosome C11572 INFO [2014-03-08 06:23:12,280] [Preprocessor.java:241] [main] Processing chromosome C11574 Processing chromosome C11574 INFO [2014-03-08 06:23:12,362] [Preprocessor.java:241] [main] Processing chromosome C1161 Processing chromosome C1161 INFO [2014-03-08 06:23:12,410] [Preprocessor.java:241] [main] Processing chromosome C11614 Processing chromosome C11614 INFO [2014-03-08 06:23:12,487] [Preprocessor.java:241] [main] Processing chromosome C11620 Processing chromosome C11620 INFO [2014-03-08 06:23:12,513] [Preprocessor.java:241] [main] Processing chromosome C11636 Processing chromosome C11636 INFO [2014-03-08 06:23:12,646] [Preprocessor.java:241] [main] Processing chromosome C11638 Processing chromosome C11638 INFO [2014-03-08 06:23:12,680] [Preprocessor.java:241] [main] Processing chromosome C11646 Processing chromosome C11646 INFO [2014-03-08 06:23:12,790] [Preprocessor.java:241] [main] Processing chromosome C1169 Processing chromosome C1169 INFO [2014-03-08 06:23:12,867] [Preprocessor.java:241] [main] Processing chromosome C11690 Processing chromosome C11690 INFO [2014-03-08 06:23:12,923] [Preprocessor.java:241] [main] Processing chromosome C11702 Processing chromosome C11702 INFO [2014-03-08 06:23:13,004] [Preprocessor.java:241] [main] Processing chromosome C11706 Processing chromosome C11706 INFO [2014-03-08 06:23:13,109] [Preprocessor.java:241] [main] Processing chromosome C11708 Processing chromosome C11708 INFO [2014-03-08 06:23:13,206] [Preprocessor.java:241] [main] Processing chromosome C11734 Processing chromosome C11734 INFO [2014-03-08 06:23:13,350] [Preprocessor.java:241] [main] Processing chromosome C1175 Processing chromosome C1175 INFO [2014-03-08 06:23:13,429] [Preprocessor.java:241] [main] Processing chromosome C11756 Processing chromosome C11756 INFO [2014-03-08 06:23:13,454] [Preprocessor.java:241] [main] Processing chromosome C11758 Processing chromosome C11758 INFO [2014-03-08 06:23:13,529] [Preprocessor.java:241] [main] Processing chromosome C11768 Processing chromosome C11768 INFO [2014-03-08 06:23:13,666] [Preprocessor.java:241] [main] Processing chromosome C1177 Processing chromosome C1177 INFO [2014-03-08 06:23:13,741] [Preprocessor.java:241] [main] Processing chromosome C11776 Processing chromosome C11776 INFO [2014-03-08 06:23:13,782] [Preprocessor.java:241] [main] Processing chromosome C11806 Processing chromosome C11806 INFO [2014-03-08 06:23:13,805] [Preprocessor.java:241] [main] Processing chromosome C11812 Processing chromosome C11812 INFO [2014-03-08 06:23:13,888] [Preprocessor.java:241] [main] Processing chromosome C11814 Processing chromosome C11814 INFO [2014-03-08 06:23:13,994] [Preprocessor.java:241] [main] Processing chromosome C11816 Processing chromosome C11816 INFO [2014-03-08 06:23:14,047] [Preprocessor.java:241] [main] Processing chromosome C11858 Processing chromosome C11858 INFO [2014-03-08 06:23:14,102] [Preprocessor.java:241] [main] Processing chromosome C11864 Processing chromosome C11864 INFO [2014-03-08 06:23:14,150] [Preprocessor.java:241] [main] Processing chromosome C11868 Processing chromosome C11868 INFO [2014-03-08 06:23:14,238] [Preprocessor.java:241] [main] Processing chromosome C11876 Processing chromosome C11876 INFO [2014-03-08 06:23:14,310] [Preprocessor.java:241] [main] Processing chromosome C11894 Processing chromosome C11894 INFO [2014-03-08 06:23:14,365] [Preprocessor.java:241] [main] Processing chromosome C1191 Processing chromosome C1191 INFO [2014-03-08 06:23:14,536] [Preprocessor.java:241] [main] Processing chromosome C11942 Processing chromosome C11942 INFO [2014-03-08 06:23:14,646] [Preprocessor.java:241] [main] Processing chromosome C11950 Processing chromosome C11950 INFO [2014-03-08 06:23:14,722] [Preprocessor.java:241] [main] Processing chromosome C11962 Processing chromosome C11962 INFO [2014-03-08 06:23:14,789] [Preprocessor.java:241] [main] Processing chromosome C11970 Processing chromosome C11970 INFO [2014-03-08 06:23:14,860] [Preprocessor.java:241] [main] Processing chromosome C12004 Processing chromosome C12004 INFO [2014-03-08 06:23:14,953] [Preprocessor.java:241] [main] Processing chromosome C12006 Processing chromosome C12006 INFO [2014-03-08 06:23:14,975] [Preprocessor.java:241] [main] Processing chromosome C12008 Processing chromosome C12008 INFO [2014-03-08 06:23:15,078] [Preprocessor.java:241] [main] Processing chromosome C12032 Processing chromosome C12032 INFO [2014-03-08 06:23:15,121] [Preprocessor.java:241] [main] Processing chromosome C12034 Processing chromosome C12034 INFO [2014-03-08 06:23:15,260] [Preprocessor.java:241] [main] Processing chromosome C1205 Processing chromosome C1205 INFO [2014-03-08 06:23:15,370] [Preprocessor.java:241] [main] Processing chromosome C12054 Processing chromosome C12054 INFO [2014-03-08 06:23:15,394] [Preprocessor.java:241] [main] Processing chromosome C12056 Processing chromosome C12056 INFO [2014-03-08 06:23:15,495] [Preprocessor.java:241] [main] Processing chromosome C12058 Processing chromosome C12058 INFO [2014-03-08 06:23:15,557] [Preprocessor.java:241] [main] Processing chromosome C12062 Processing chromosome C12062 INFO [2014-03-08 06:23:15,640] [Preprocessor.java:241] [main] Processing chromosome C12064 Processing chromosome C12064 INFO [2014-03-08 06:23:15,673] [Preprocessor.java:241] [main] Processing chromosome C12066 Processing chromosome C12066 INFO [2014-03-08 06:23:15,733] [Preprocessor.java:241] [main] Processing chromosome C12068 Processing chromosome C12068 INFO [2014-03-08 06:23:15,791] [Preprocessor.java:241] [main] Processing chromosome C1207 Processing chromosome C1207 INFO [2014-03-08 06:23:15,868] [Preprocessor.java:241] [main] Processing chromosome C12106 Processing chromosome C12106 INFO [2014-03-08 06:23:15,891] [Preprocessor.java:241] [main] Processing chromosome C12108 Processing chromosome C12108 INFO [2014-03-08 06:23:15,979] [Preprocessor.java:241] [main] Processing chromosome C12110 Processing chromosome C12110 INFO [2014-03-08 06:23:16,055] [Preprocessor.java:241] [main] Processing chromosome C12122 Processing chromosome C12122 INFO [2014-03-08 06:23:16,094] [Preprocessor.java:241] [main] Processing chromosome C12146 Processing chromosome C12146 INFO [2014-03-08 06:23:16,148] [Preprocessor.java:241] [main] Processing chromosome C12152 Processing chromosome C12152 INFO [2014-03-08 06:23:16,189] [Preprocessor.java:241] [main] Processing chromosome C12166 Processing chromosome C12166 INFO [2014-03-08 06:23:16,244] [Preprocessor.java:241] [main] Processing chromosome C12206 Processing chromosome C12206 INFO [2014-03-08 06:23:16,356] [Preprocessor.java:241] [main] Processing chromosome C12216 Processing chromosome C12216 INFO [2014-03-08 06:23:16,447] [Preprocessor.java:241] [main] Processing chromosome C12220 Processing chromosome C12220 INFO [2014-03-08 06:23:16,470] [Preprocessor.java:241] [main] Processing chromosome C12252 Processing chromosome C12252 INFO [2014-03-08 06:23:16,553] [Preprocessor.java:241] [main] Processing chromosome C12264 Processing chromosome C12264 INFO [2014-03-08 06:23:16,618] [Preprocessor.java:241] [main] Processing chromosome C12274 Processing chromosome C12274 INFO [2014-03-08 06:23:16,675] [Preprocessor.java:241] [main] Processing chromosome C12282 Processing chromosome C12282 INFO [2014-03-08 06:23:16,712] [Preprocessor.java:241] [main] Processing chromosome C12298 Processing chromosome C12298 INFO [2014-03-08 06:23:16,794] [Preprocessor.java:241] [main] Processing chromosome C12314 Processing chromosome C12314 INFO [2014-03-08 06:23:16,845] [Preprocessor.java:241] [main] Processing chromosome C12316 Processing chromosome C12316 INFO [2014-03-08 06:23:16,983] [Preprocessor.java:241] [main] Processing chromosome C12320 Processing chromosome C12320 INFO [2014-03-08 06:23:17,056] [Preprocessor.java:241] [main] Processing chromosome C12324 Processing chromosome C12324 INFO [2014-03-08 06:23:17,088] [Preprocessor.java:241] [main] Processing chromosome C12328 Processing chromosome C12328 INFO [2014-03-08 06:23:17,154] [Preprocessor.java:241] [main] Processing chromosome C12366 Processing chromosome C12366 INFO [2014-03-08 06:23:17,194] [Preprocessor.java:241] [main] Processing chromosome C12368 Processing chromosome C12368 INFO [2014-03-08 06:23:17,230] [Preprocessor.java:241] [main] Processing chromosome C12376 Processing chromosome C12376 INFO [2014-03-08 06:23:17,307] [Preprocessor.java:241] [main] Processing chromosome C12386 Processing chromosome C12386 INFO [2014-03-08 06:23:17,362] [Preprocessor.java:241] [main] Processing chromosome C12388 Processing chromosome C12388 INFO [2014-03-08 06:23:17,416] [Preprocessor.java:241] [main] Processing chromosome C12390 Processing chromosome C12390 INFO [2014-03-08 06:23:17,482] [Preprocessor.java:241] [main] Processing chromosome C12392 Processing chromosome C12392 INFO [2014-03-08 06:23:17,557] [Preprocessor.java:241] [main] Processing chromosome C12412 Processing chromosome C12412 INFO [2014-03-08 06:23:17,710] [Preprocessor.java:241] [main] Processing chromosome C12420 Processing chromosome C12420 INFO [2014-03-08 06:23:17,779] [Preprocessor.java:241] [main] Processing chromosome C12426 Processing chromosome C12426 INFO [2014-03-08 06:23:17,816] [Preprocessor.java:241] [main] Processing chromosome C12428 Processing chromosome C12428 INFO [2014-03-08 06:23:17,866] [Preprocessor.java:241] [main] Processing chromosome C12430 Processing chromosome C12430 INFO [2014-03-08 06:23:17,887] [Preprocessor.java:241] [main] Processing chromosome C12438 Processing chromosome C12438 INFO [2014-03-08 06:23:17,920] [Preprocessor.java:241] [main] Processing chromosome C12478 Processing chromosome C12478 INFO [2014-03-08 06:23:17,980] [Preprocessor.java:241] [main] Processing chromosome C12480 Processing chromosome C12480 INFO [2014-03-08 06:23:18,010] [Preprocessor.java:241] [main] Processing chromosome C12484 Processing chromosome C12484 INFO [2014-03-08 06:23:18,097] [Preprocessor.java:241] [main] Processing chromosome C12492 Processing chromosome C12492 INFO [2014-03-08 06:23:18,228] [Preprocessor.java:241] [main] Processing chromosome C12494 Processing chromosome C12494 INFO [2014-03-08 06:23:18,301] [Preprocessor.java:241] [main] Processing chromosome C12504 Processing chromosome C12504 INFO [2014-03-08 06:23:18,402] [Preprocessor.java:241] [main] Processing chromosome C12506 Processing chromosome C12506 INFO [2014-03-08 06:23:18,444] [Preprocessor.java:241] [main] Processing chromosome C12508 Processing chromosome C12508 INFO [2014-03-08 06:23:18,486] [Preprocessor.java:241] [main] Processing chromosome C12534 Processing chromosome C12534 INFO [2014-03-08 06:23:18,537] [Preprocessor.java:241] [main] Processing chromosome C12538 Processing chromosome C12538 INFO [2014-03-08 06:23:18,578] [Preprocessor.java:241] [main] Processing chromosome C12540 Processing chromosome C12540 INFO [2014-03-08 06:23:18,638] [Preprocessor.java:241] [main] Processing chromosome C12542 Processing chromosome C12542 INFO [2014-03-08 06:23:18,690] [Preprocessor.java:241] [main] Processing chromosome C12548 Processing chromosome C12548 INFO [2014-03-08 06:23:18,774] [Preprocessor.java:241] [main] Processing chromosome C12552 Processing chromosome C12552 INFO [2014-03-08 06:23:18,805] [Preprocessor.java:241] [main] Processing chromosome C12558 Processing chromosome C12558 INFO [2014-03-08 06:23:18,851] [Preprocessor.java:241] [main] Processing chromosome C12584 Processing chromosome C12584 INFO [2014-03-08 06:23:18,891] [Preprocessor.java:241] [main] Processing chromosome C12590 Processing chromosome C12590 INFO [2014-03-08 06:23:18,945] [Preprocessor.java:241] [main] Processing chromosome C12592 Processing chromosome C12592 INFO [2014-03-08 06:23:18,965] [Preprocessor.java:241] [main] Processing chromosome C12618 Processing chromosome C12618 INFO [2014-03-08 06:23:19,073] [Preprocessor.java:241] [main] Processing chromosome C12622 Processing chromosome C12622 INFO [2014-03-08 06:23:19,117] [Preprocessor.java:241] [main] Processing chromosome C12658 Processing chromosome C12658 INFO [2014-03-08 06:23:19,166] [Preprocessor.java:241] [main] Processing chromosome C12660 Processing chromosome C12660 INFO [2014-03-08 06:23:19,225] [Preprocessor.java:241] [main] Processing chromosome C12662 Processing chromosome C12662 INFO [2014-03-08 06:23:19,287] [Preprocessor.java:241] [main] Processing chromosome C12682 Processing chromosome C12682 INFO [2014-03-08 06:23:19,323] [Preprocessor.java:241] [main] Processing chromosome C12708 Processing chromosome C12708 INFO [2014-03-08 06:23:19,359] [Preprocessor.java:241] [main] Processing chromosome C12718 Processing chromosome C12718 INFO [2014-03-08 06:23:19,381] [Preprocessor.java:241] [main] Processing chromosome C12722 Processing chromosome C12722 INFO [2014-03-08 06:23:19,426] [Preprocessor.java:241] [main] Processing chromosome C12724 Processing chromosome C12724 INFO [2014-03-08 06:23:19,474] [Preprocessor.java:241] [main] Processing chromosome C12738 Processing chromosome C12738 INFO [2014-03-08 06:23:19,525] [Preprocessor.java:241] [main] Processing chromosome C12748 Processing chromosome C12748 INFO [2014-03-08 06:23:19,566] [Preprocessor.java:241] [main] Processing chromosome C12758 Processing chromosome C12758 INFO [2014-03-08 06:23:19,640] [Preprocessor.java:241] [main] Processing chromosome C12760 Processing chromosome C12760 INFO [2014-03-08 06:23:19,679] [Preprocessor.java:241] [main] Processing chromosome C12764 Processing chromosome C12764 INFO [2014-03-08 06:23:19,757] [Preprocessor.java:241] [main] Processing chromosome C12778 Processing chromosome C12778 INFO [2014-03-08 06:23:19,777] [Preprocessor.java:241] [main] Processing chromosome C12786 Processing chromosome C12786 INFO [2014-03-08 06:23:19,812] [Preprocessor.java:241] [main] Processing chromosome C12798 Processing chromosome C12798 INFO [2014-03-08 06:23:19,895] [Preprocessor.java:241] [main] Processing chromosome C12814 Processing chromosome C12814 INFO [2014-03-08 06:23:19,950] [Preprocessor.java:241] [main] Processing chromosome C12830 Processing chromosome C12830 INFO [2014-03-08 06:23:20,009] [Preprocessor.java:241] [main] Processing chromosome C12832 Processing chromosome C12832 INFO [2014-03-08 06:23:20,030] [Preprocessor.java:241] [main] Processing chromosome C12838 Processing chromosome C12838 INFO [2014-03-08 06:23:20,128] [Preprocessor.java:241] [main] Processing chromosome C12840 Processing chromosome C12840 INFO [2014-03-08 06:23:20,153] [Preprocessor.java:241] [main] Processing chromosome C12848 Processing chromosome C12848 INFO [2014-03-08 06:23:20,196] [Preprocessor.java:241] [main] Processing chromosome C12882 Processing chromosome C12882 INFO [2014-03-08 06:23:20,291] [Preprocessor.java:241] [main] Processing chromosome C12906 Processing chromosome C12906 INFO [2014-03-08 06:23:20,322] [Preprocessor.java:241] [main] Processing chromosome C12916 Processing chromosome C12916 INFO [2014-03-08 06:23:20,431] [Preprocessor.java:241] [main] Processing chromosome C12928 Processing chromosome C12928 INFO [2014-03-08 06:23:20,470] [Preprocessor.java:241] [main] Processing chromosome C12930 Processing chromosome C12930 INFO [2014-03-08 06:23:20,542] [Preprocessor.java:241] [main] Processing chromosome C12932 Processing chromosome C12932 INFO [2014-03-08 06:23:20,613] [Preprocessor.java:241] [main] Processing chromosome C12934 Processing chromosome C12934 INFO [2014-03-08 06:23:20,694] [Preprocessor.java:241] [main] Processing chromosome C12938 Processing chromosome C12938 INFO [2014-03-08 06:23:20,771] [Preprocessor.java:241] [main] Processing chromosome C12970 Processing chromosome C12970 INFO [2014-03-08 06:23:20,831] [Preprocessor.java:241] [main] Processing chromosome C12972 Processing chromosome C12972 INFO [2014-03-08 06:23:20,916] [Preprocessor.java:241] [main] Processing chromosome C12974 Processing chromosome C12974 INFO [2014-03-08 06:23:20,977] [Preprocessor.java:241] [main] Processing chromosome C12984 Processing chromosome C12984 INFO [2014-03-08 06:23:21,004] [Preprocessor.java:241] [main] Processing chromosome C13016 Processing chromosome C13016 INFO [2014-03-08 06:23:21,069] [Preprocessor.java:241] [main] Processing chromosome C13020 Processing chromosome C13020 INFO [2014-03-08 06:23:21,139] [Preprocessor.java:241] [main] Processing chromosome C13026 Processing chromosome C13026 INFO [2014-03-08 06:23:21,193] [Preprocessor.java:241] [main] Processing chromosome C13028 Processing chromosome C13028 INFO [2014-03-08 06:23:21,265] [Preprocessor.java:241] [main] Processing chromosome C1305 Processing chromosome C1305 INFO [2014-03-08 06:23:21,326] [Preprocessor.java:241] [main] Processing chromosome C13050 Processing chromosome C13050 INFO [2014-03-08 06:23:21,346] [Preprocessor.java:241] [main] Processing chromosome C13052 Processing chromosome C13052 INFO [2014-03-08 06:23:21,442] [Preprocessor.java:241] [main] Processing chromosome C13054 Processing chromosome C13054 INFO [2014-03-08 06:23:21,483] [Preprocessor.java:241] [main] Processing chromosome C13080 Processing chromosome C13080 INFO [2014-03-08 06:23:21,502] [Preprocessor.java:241] [main] Processing chromosome C13094 Processing chromosome C13094 INFO [2014-03-08 06:23:21,541] [Preprocessor.java:241] [main] Processing chromosome C13098 Processing chromosome C13098 INFO [2014-03-08 06:23:21,648] [Preprocessor.java:241] [main] Processing chromosome C13134 Processing chromosome C13134 INFO [2014-03-08 06:23:21,729] [Preprocessor.java:241] [main] Processing chromosome C13136 Processing chromosome C13136 INFO [2014-03-08 06:23:21,801] [Preprocessor.java:241] [main] Processing chromosome C13140 Processing chromosome C13140 INFO [2014-03-08 06:23:21,860] [Preprocessor.java:241] [main] Processing chromosome C13156 Processing chromosome C13156 INFO [2014-03-08 06:23:21,931] [Preprocessor.java:241] [main] Processing chromosome C13164 Processing chromosome C13164 INFO [2014-03-08 06:23:21,955] [Preprocessor.java:241] [main] Processing chromosome C13178 Processing chromosome C13178 INFO [2014-03-08 06:23:22,022] [Preprocessor.java:241] [main] Processing chromosome C13180 Processing chromosome C13180 INFO [2014-03-08 06:23:22,043] [Preprocessor.java:241] [main] Processing chromosome C13186 Processing chromosome C13186 INFO [2014-03-08 06:23:22,100] [Preprocessor.java:241] [main] Processing chromosome C1319 Processing chromosome C1319 INFO [2014-03-08 06:23:22,147] [Preprocessor.java:241] [main] Processing chromosome C13208 Processing chromosome C13208 INFO [2014-03-08 06:23:22,207] [Preprocessor.java:241] [main] Processing chromosome C13218 Processing chromosome C13218 INFO [2014-03-08 06:23:22,257] [Preprocessor.java:241] [main] Processing chromosome C13266 Processing chromosome C13266 INFO [2014-03-08 06:23:22,300] [Preprocessor.java:241] [main] Processing chromosome C13268 Processing chromosome C13268 INFO [2014-03-08 06:23:22,378] [Preprocessor.java:241] [main] Processing chromosome C13320 Processing chromosome C13320 INFO [2014-03-08 06:23:22,454] [Preprocessor.java:241] [main] Processing chromosome C13324 Processing chromosome C13324 INFO [2014-03-08 06:23:22,473] [Preprocessor.java:241] [main] Processing chromosome C13326 Processing chromosome C13326 INFO [2014-03-08 06:23:22,529] [Preprocessor.java:241] [main] Processing chromosome C13328 Processing chromosome C13328 INFO [2014-03-08 06:23:22,603] [Preprocessor.java:241] [main] Processing chromosome C13346 Processing chromosome C13346 INFO [2014-03-08 06:23:22,627] [Preprocessor.java:241] [main] Processing chromosome C13370 Processing chromosome C13370 INFO [2014-03-08 06:23:22,670] [Preprocessor.java:241] [main] Processing chromosome C13396 Processing chromosome C13396 INFO [2014-03-08 06:23:22,711] [Preprocessor.java:241] [main] Processing chromosome C13406 Processing chromosome C13406 INFO [2014-03-08 06:23:22,784] [Preprocessor.java:241] [main] Processing chromosome C13424 Processing chromosome C13424 INFO [2014-03-08 06:23:22,805] [Preprocessor.java:241] [main] Processing chromosome C13440 Processing chromosome C13440 INFO [2014-03-08 06:23:22,883] [Preprocessor.java:241] [main] Processing chromosome C13460 Processing chromosome C13460 INFO [2014-03-08 06:23:22,905] [Preprocessor.java:241] [main] Processing chromosome C13462 Processing chromosome C13462 INFO [2014-03-08 06:23:22,937] [Preprocessor.java:241] [main] Processing chromosome C13466 Processing chromosome C13466 INFO [2014-03-08 06:23:22,989] [Preprocessor.java:241] [main] Processing chromosome C13508 Processing chromosome C13508 INFO [2014-03-08 06:23:23,101] [Preprocessor.java:241] [main] Processing chromosome C13512 Processing chromosome C13512 INFO [2014-03-08 06:23:23,168] [Preprocessor.java:241] [main] Processing chromosome C13516 Processing chromosome C13516 INFO [2014-03-08 06:23:23,195] [Preprocessor.java:241] [main] Processing chromosome C13528 Processing chromosome C13528 INFO [2014-03-08 06:23:23,267] [Preprocessor.java:241] [main] Processing chromosome C13532 Processing chromosome C13532 INFO [2014-03-08 06:23:23,351] [Preprocessor.java:241] [main] Processing chromosome C13552 Processing chromosome C13552 INFO [2014-03-08 06:23:23,435] [Preprocessor.java:241] [main] Processing chromosome C13584 Processing chromosome C13584 INFO [2014-03-08 06:23:23,511] [Preprocessor.java:241] [main] Processing chromosome C13590 Processing chromosome C13590 INFO [2014-03-08 06:23:23,565] [Preprocessor.java:241] [main] Processing chromosome C13592 Processing chromosome C13592 INFO [2014-03-08 06:23:23,657] [Preprocessor.java:241] [main] Processing chromosome C13600 Processing chromosome C13600 INFO [2014-03-08 06:23:23,683] [Preprocessor.java:241] [main] Processing chromosome C13614 Processing chromosome C13614 INFO [2014-03-08 06:23:23,776] [Preprocessor.java:241] [main] Processing chromosome C13652 Processing chromosome C13652 INFO [2014-03-08 06:23:23,808] [Preprocessor.java:241] [main] Processing chromosome C13654 Processing chromosome C13654 INFO [2014-03-08 06:23:23,859] [Preprocessor.java:241] [main] Processing chromosome C13666 Processing chromosome C13666 INFO [2014-03-08 06:23:23,906] [Preprocessor.java:241] [main] Processing chromosome C13690 Processing chromosome C13690 INFO [2014-03-08 06:23:23,977] [Preprocessor.java:241] [main] Processing chromosome C13732 Processing chromosome C13732 INFO [2014-03-08 06:23:24,030] [Preprocessor.java:241] [main] Processing chromosome C1377 Processing chromosome C1377 INFO [2014-03-08 06:23:24,068] [Preprocessor.java:241] [main] Processing chromosome C13786 Processing chromosome C13786 INFO [2014-03-08 06:23:24,141] [Preprocessor.java:241] [main] Processing chromosome C13810 Processing chromosome C13810 INFO [2014-03-08 06:23:24,217] [Preprocessor.java:241] [main] Processing chromosome C1383 Processing chromosome C1383 INFO [2014-03-08 06:23:24,538] [Preprocessor.java:241] [main] Processing chromosome C13854 Processing chromosome C13854 INFO [2014-03-08 06:23:24,628] [Preprocessor.java:241] [main] Processing chromosome C13860 Processing chromosome C13860 INFO [2014-03-08 06:23:24,649] [Preprocessor.java:241] [main] Processing chromosome C13868 Processing chromosome C13868 INFO [2014-03-08 06:23:24,728] [Preprocessor.java:241] [main] Processing chromosome C13874 Processing chromosome C13874 INFO [2014-03-08 06:23:24,749] [Preprocessor.java:241] [main] Processing chromosome C13878 Processing chromosome C13878 INFO [2014-03-08 06:23:24,830] [Preprocessor.java:241] [main] Processing chromosome C13888 Processing chromosome C13888 INFO [2014-03-08 06:23:24,895] [Preprocessor.java:241] [main] Processing chromosome C1389 Processing chromosome C1389 INFO [2014-03-08 06:23:24,978] [Preprocessor.java:241] [main] Processing chromosome C13904 Processing chromosome C13904 INFO [2014-03-08 06:23:25,019] [Preprocessor.java:241] [main] Processing chromosome C13908 Processing chromosome C13908 INFO [2014-03-08 06:23:25,078] [Preprocessor.java:241] [main] Processing chromosome C13916 Processing chromosome C13916 INFO [2014-03-08 06:23:25,120] [Preprocessor.java:241] [main] Processing chromosome C13930 Processing chromosome C13930 INFO [2014-03-08 06:23:25,175] [Preprocessor.java:241] [main] Processing chromosome C13940 Processing chromosome C13940 INFO [2014-03-08 06:23:25,285] [Preprocessor.java:241] [main] Processing chromosome C13950 Processing chromosome C13950 INFO [2014-03-08 06:23:25,321] [Preprocessor.java:241] [main] Processing chromosome C13992 Processing chromosome C13992 INFO [2014-03-08 06:23:25,363] [Preprocessor.java:241] [main] Processing chromosome C14008 Processing chromosome C14008 INFO [2014-03-08 06:23:25,416] [Preprocessor.java:241] [main] Processing chromosome C14022 Processing chromosome C14022 INFO [2014-03-08 06:23:25,528] [Preprocessor.java:241] [main] Processing chromosome C14066 Processing chromosome C14066 INFO [2014-03-08 06:23:25,603] [Preprocessor.java:241] [main] Processing chromosome C14086 Processing chromosome C14086 INFO [2014-03-08 06:23:25,645] [Preprocessor.java:241] [main] Processing chromosome C14104 Processing chromosome C14104 INFO [2014-03-08 06:23:25,761] [Preprocessor.java:241] [main] Processing chromosome C14108 Processing chromosome C14108 INFO [2014-03-08 06:23:25,813] [Preprocessor.java:241] [main] Processing chromosome C14128 Processing chromosome C14128 INFO [2014-03-08 06:23:25,884] [Preprocessor.java:241] [main] Processing chromosome C14162 Processing chromosome C14162 INFO [2014-03-08 06:23:25,939] [Preprocessor.java:241] [main] Processing chromosome C14170 Processing chromosome C14170 INFO [2014-03-08 06:23:25,971] [Preprocessor.java:241] [main] Processing chromosome C14184 Processing chromosome C14184 INFO [2014-03-08 06:23:26,109] [Preprocessor.java:241] [main] Processing chromosome C14186 Processing chromosome C14186 INFO [2014-03-08 06:23:26,195] [Preprocessor.java:241] [main] Processing chromosome C14188 Processing chromosome C14188 INFO [2014-03-08 06:23:26,241] [Preprocessor.java:241] [main] Processing chromosome C14214 Processing chromosome C14214 INFO [2014-03-08 06:23:26,350] [Preprocessor.java:241] [main] Processing chromosome C14226 Processing chromosome C14226 INFO [2014-03-08 06:23:26,406] [Preprocessor.java:241] [main] Processing chromosome C14228 Processing chromosome C14228 INFO [2014-03-08 06:23:26,451] [Preprocessor.java:241] [main] Processing chromosome C14248 Processing chromosome C14248 INFO [2014-03-08 06:23:26,542] [Preprocessor.java:241] [main] Processing chromosome C14276 Processing chromosome C14276 INFO [2014-03-08 06:23:26,569] [Preprocessor.java:241] [main] Processing chromosome C14282 Processing chromosome C14282 INFO [2014-03-08 06:23:26,653] [Preprocessor.java:241] [main] Processing chromosome C14304 Processing chromosome C14304 INFO [2014-03-08 06:23:26,672] [Preprocessor.java:241] [main] Processing chromosome C14326 Processing chromosome C14326 INFO [2014-03-08 06:23:26,759] [Preprocessor.java:241] [main] Processing chromosome C14340 Processing chromosome C14340 INFO [2014-03-08 06:23:26,894] [Preprocessor.java:241] [main] Processing chromosome C14362 Processing chromosome C14362 INFO [2014-03-08 06:23:26,981] [Preprocessor.java:241] [main] Processing chromosome C14366 Processing chromosome C14366 INFO [2014-03-08 06:23:27,014] [Preprocessor.java:241] [main] Processing chromosome C14378 Processing chromosome C14378 INFO [2014-03-08 06:23:27,075] [Preprocessor.java:241] [main] Processing chromosome C14384 Processing chromosome C14384 INFO [2014-03-08 06:23:27,108] [Preprocessor.java:241] [main] Processing chromosome C14386 Processing chromosome C14386 INFO [2014-03-08 06:23:27,182] [Preprocessor.java:241] [main] Processing chromosome C14400 Processing chromosome C14400 INFO [2014-03-08 06:23:27,271] [Preprocessor.java:241] [main] Processing chromosome C14418 Processing chromosome C14418 INFO [2014-03-08 06:23:27,404] [Preprocessor.java:241] [main] Processing chromosome C14424 Processing chromosome C14424 INFO [2014-03-08 06:23:27,500] [Preprocessor.java:241] [main] Processing chromosome C14432 Processing chromosome C14432 INFO [2014-03-08 06:23:27,634] [Preprocessor.java:241] [main] Processing chromosome C14434 Processing chromosome C14434 INFO [2014-03-08 06:23:27,706] [Preprocessor.java:241] [main] Processing chromosome C14446 Processing chromosome C14446 INFO [2014-03-08 06:23:27,762] [Preprocessor.java:241] [main] Processing chromosome C14450 Processing chromosome C14450 INFO [2014-03-08 06:23:27,814] [Preprocessor.java:241] [main] Processing chromosome C14454 Processing chromosome C14454 INFO [2014-03-08 06:23:27,847] [Preprocessor.java:241] [main] Processing chromosome C14468 Processing chromosome C14468 INFO [2014-03-08 06:23:27,941] [Preprocessor.java:241] [main] Processing chromosome C14478 Processing chromosome C14478 INFO [2014-03-08 06:23:27,961] [Preprocessor.java:241] [main] Processing chromosome C14484 Processing chromosome C14484 INFO [2014-03-08 06:23:28,027] [Preprocessor.java:241] [main] Processing chromosome C14486 Processing chromosome C14486 INFO [2014-03-08 06:23:28,050] [Preprocessor.java:241] [main] Processing chromosome C14498 Processing chromosome C14498 INFO [2014-03-08 06:23:28,134] [Preprocessor.java:241] [main] Processing chromosome C14510 Processing chromosome C14510 INFO [2014-03-08 06:23:28,184] [Preprocessor.java:241] [main] Processing chromosome C14520 Processing chromosome C14520 INFO [2014-03-08 06:23:28,270] [Preprocessor.java:241] [main] Processing chromosome C14528 Processing chromosome C14528 INFO [2014-03-08 06:23:28,341] [Preprocessor.java:241] [main] Processing chromosome C14542 Processing chromosome C14542 INFO [2014-03-08 06:23:28,397] [Preprocessor.java:241] [main] Processing chromosome C14546 Processing chromosome C14546 INFO [2014-03-08 06:23:28,440] [Preprocessor.java:241] [main] Processing chromosome C14560 Processing chromosome C14560 INFO [2014-03-08 06:23:28,503] [Preprocessor.java:241] [main] Processing chromosome C14566 Processing chromosome C14566 INFO [2014-03-08 06:23:28,563] [Preprocessor.java:241] [main] Processing chromosome C14568 Processing chromosome C14568 INFO [2014-03-08 06:23:28,630] [Preprocessor.java:241] [main] Processing chromosome C14588 Processing chromosome C14588 INFO [2014-03-08 06:23:28,657] [Preprocessor.java:241] [main] Processing chromosome C14614 Processing chromosome C14614 INFO [2014-03-08 06:23:28,714] [Preprocessor.java:241] [main] Processing chromosome C14626 Processing chromosome C14626 INFO [2014-03-08 06:23:28,730] [Preprocessor.java:241] [main] Processing chromosome C14636 Processing chromosome C14636 INFO [2014-03-08 06:23:28,786] [Preprocessor.java:241] [main] Processing chromosome C14638 Processing chromosome C14638 INFO [2014-03-08 06:23:28,829] [Preprocessor.java:241] [main] Processing chromosome C14652 Processing chromosome C14652 INFO [2014-03-08 06:23:28,866] [Preprocessor.java:241] [main] Processing chromosome C14668 Processing chromosome C14668 INFO [2014-03-08 06:23:28,907] [Preprocessor.java:241] [main] Processing chromosome C14678 Processing chromosome C14678 INFO [2014-03-08 06:23:28,927] [Preprocessor.java:241] [main] Processing chromosome C14686 Processing chromosome C14686 INFO [2014-03-08 06:23:28,950] [Preprocessor.java:241] [main] Processing chromosome C14692 Processing chromosome C14692 INFO [2014-03-08 06:23:29,016] [Preprocessor.java:241] [main] Processing chromosome C14702 Processing chromosome C14702 INFO [2014-03-08 06:23:29,042] [Preprocessor.java:241] [main] Processing chromosome C14704 Processing chromosome C14704 INFO [2014-03-08 06:23:29,058] [Preprocessor.java:241] [main] Processing chromosome C14706 Processing chromosome C14706 INFO [2014-03-08 06:23:29,124] [Preprocessor.java:241] [main] Processing chromosome C14716 Processing chromosome C14716 INFO [2014-03-08 06:23:29,141] [Preprocessor.java:241] [main] Processing chromosome C14718 Processing chromosome C14718 INFO [2014-03-08 06:23:29,177] [Preprocessor.java:241] [main] Processing chromosome C14724 Processing chromosome C14724 INFO [2014-03-08 06:23:29,241] [Preprocessor.java:241] [main] Processing chromosome C14734 Processing chromosome C14734 INFO [2014-03-08 06:23:29,307] [Preprocessor.java:241] [main] Processing chromosome C14744 Processing chromosome C14744 INFO [2014-03-08 06:23:29,373] [Preprocessor.java:241] [main] Processing chromosome C14746 Processing chromosome C14746 INFO [2014-03-08 06:23:29,415] [Preprocessor.java:241] [main] Processing chromosome C14774 Processing chromosome C14774 INFO [2014-03-08 06:23:29,495] [Preprocessor.java:241] [main] Processing chromosome C14782 Processing chromosome C14782 INFO [2014-03-08 06:23:29,549] [Preprocessor.java:241] [main] Processing chromosome C14788 Processing chromosome C14788 INFO [2014-03-08 06:23:29,610] [Preprocessor.java:241] [main] Processing chromosome C14790 Processing chromosome C14790 INFO [2014-03-08 06:23:29,677] [Preprocessor.java:241] [main] Processing chromosome C14800 Processing chromosome C14800 INFO [2014-03-08 06:23:29,718] [Preprocessor.java:241] [main] Processing chromosome C14818 Processing chromosome C14818 INFO [2014-03-08 06:23:29,790] [Preprocessor.java:241] [main] Processing chromosome C14822 Processing chromosome C14822 INFO [2014-03-08 06:23:29,828] [Preprocessor.java:241] [main] Processing chromosome C14832 Processing chromosome C14832 INFO [2014-03-08 06:23:29,892] [Preprocessor.java:241] [main] Processing chromosome C14848 Processing chromosome C14848 INFO [2014-03-08 06:23:29,947] [Preprocessor.java:241] [main] Processing chromosome C14852 Processing chromosome C14852 INFO [2014-03-08 06:23:29,993] [Preprocessor.java:241] [main] Processing chromosome C14858 Processing chromosome C14858 INFO [2014-03-08 06:23:30,059] [Preprocessor.java:241] [main] Processing chromosome C14868 Processing chromosome C14868 INFO [2014-03-08 06:23:30,132] [Preprocessor.java:241] [main] Processing chromosome C14880 Processing chromosome C14880 INFO [2014-03-08 06:23:30,190] [Preprocessor.java:241] [main] Processing chromosome C14902 Processing chromosome C14902 INFO [2014-03-08 06:23:30,258] [Preprocessor.java:241] [main] Processing chromosome C14906 Processing chromosome C14906 INFO [2014-03-08 06:23:30,322] [Preprocessor.java:241] [main] Processing chromosome C14910 Processing chromosome C14910 INFO [2014-03-08 06:23:30,372] [Preprocessor.java:241] [main] Processing chromosome C14924 Processing chromosome C14924 INFO [2014-03-08 06:23:30,423] [Preprocessor.java:241] [main] Processing chromosome C14940 Processing chromosome C14940 INFO [2014-03-08 06:23:30,474] [Preprocessor.java:241] [main] Processing chromosome C14942 Processing chromosome C14942 INFO [2014-03-08 06:23:30,490] [Preprocessor.java:241] [main] Processing chromosome C14944 Processing chromosome C14944 INFO [2014-03-08 06:23:30,549] [Preprocessor.java:241] [main] Processing chromosome C14946 Processing chromosome C14946 INFO [2014-03-08 06:23:30,616] [Preprocessor.java:241] [main] Processing chromosome C14952 Processing chromosome C14952 INFO [2014-03-08 06:23:30,677] [Preprocessor.java:241] [main] Processing chromosome C14958 Processing chromosome C14958 INFO [2014-03-08 06:23:30,748] [Preprocessor.java:241] [main] Processing chromosome C14966 Processing chromosome C14966 INFO [2014-03-08 06:23:30,776] [Preprocessor.java:241] [main] Processing chromosome C14984 Processing chromosome C14984 INFO [2014-03-08 06:23:30,858] [Preprocessor.java:241] [main] Processing chromosome C15006 Processing chromosome C15006 INFO [2014-03-08 06:23:30,928] [Preprocessor.java:241] [main] Processing chromosome C15022 Processing chromosome C15022 INFO [2014-03-08 06:23:30,995] [Preprocessor.java:241] [main] Processing chromosome C15024 Processing chromosome C15024 INFO [2014-03-08 06:23:31,083] [Preprocessor.java:241] [main] Processing chromosome C1503 Processing chromosome C1503 INFO [2014-03-08 06:23:31,178] [Preprocessor.java:241] [main] Processing chromosome C15064 Processing chromosome C15064 INFO [2014-03-08 06:23:31,240] [Preprocessor.java:241] [main] Processing chromosome C15086 Processing chromosome C15086 INFO [2014-03-08 06:23:31,262] [Preprocessor.java:241] [main] Processing chromosome C15112 Processing chromosome C15112 INFO [2014-03-08 06:23:31,305] [Preprocessor.java:241] [main] Processing chromosome C15138 Processing chromosome C15138 INFO [2014-03-08 06:23:31,332] [Preprocessor.java:241] [main] Processing chromosome C15142 Processing chromosome C15142 INFO [2014-03-08 06:23:31,373] [Preprocessor.java:241] [main] Processing chromosome C15154 Processing chromosome C15154 INFO [2014-03-08 06:23:31,423] [Preprocessor.java:241] [main] Processing chromosome C15160 Processing chromosome C15160 INFO [2014-03-08 06:23:31,432] [Preprocessor.java:241] [main] Processing chromosome C15162 Processing chromosome C15162 INFO [2014-03-08 06:23:31,473] [Preprocessor.java:241] [main] Processing chromosome C15164 Processing chromosome C15164 INFO [2014-03-08 06:23:31,493] [Preprocessor.java:241] [main] Processing chromosome C15180 Processing chromosome C15180 INFO [2014-03-08 06:23:31,572] [Preprocessor.java:241] [main] Processing chromosome C15188 Processing chromosome C15188 INFO [2014-03-08 06:23:31,642] [Preprocessor.java:241] [main] Processing chromosome C15202 Processing chromosome C15202 INFO [2014-03-08 06:23:31,695] [Preprocessor.java:241] [main] Processing chromosome C15240 Processing chromosome C15240 INFO [2014-03-08 06:23:31,770] [Preprocessor.java:241] [main] Processing chromosome C15242 Processing chromosome C15242 INFO [2014-03-08 06:23:31,876] [Preprocessor.java:241] [main] Processing chromosome C15260 Processing chromosome C15260 INFO [2014-03-08 06:23:31,962] [Preprocessor.java:241] [main] Processing chromosome C15276 Processing chromosome C15276 INFO [2014-03-08 06:23:31,980] [Preprocessor.java:241] [main] Processing chromosome C1531 Processing chromosome C1531 INFO [2014-03-08 06:23:32,054] [Preprocessor.java:241] [main] Processing chromosome C15324 Processing chromosome C15324 INFO [2014-03-08 06:23:32,096] [Preprocessor.java:241] [main] Processing chromosome C15334 Processing chromosome C15334 INFO [2014-03-08 06:23:32,112] [Preprocessor.java:241] [main] Processing chromosome C15338 Processing chromosome C15338 INFO [2014-03-08 06:23:32,158] [Preprocessor.java:241] [main] Processing chromosome C15340 Processing chromosome C15340 INFO [2014-03-08 06:23:32,222] [Preprocessor.java:241] [main] Processing chromosome C15342 Processing chromosome C15342 INFO [2014-03-08 06:23:32,238] [Preprocessor.java:241] [main] Processing chromosome C15346 Processing chromosome C15346 INFO [2014-03-08 06:23:32,308] [Preprocessor.java:241] [main] Processing chromosome C15348 Processing chromosome C15348 INFO [2014-03-08 06:23:32,330] [Preprocessor.java:241] [main] Processing chromosome C1535 Processing chromosome C1535 INFO [2014-03-08 06:23:32,378] [Preprocessor.java:241] [main] Processing chromosome C15352 Processing chromosome C15352 INFO [2014-03-08 06:23:32,417] [Preprocessor.java:241] [main] Processing chromosome C15386 Processing chromosome C15386 INFO [2014-03-08 06:23:32,486] [Preprocessor.java:241] [main] Processing chromosome C15404 Processing chromosome C15404 INFO [2014-03-08 06:23:32,540] [Preprocessor.java:241] [main] Processing chromosome C15424 Processing chromosome C15424 INFO [2014-03-08 06:23:32,555] [Preprocessor.java:241] [main] Processing chromosome C15430 Processing chromosome C15430 INFO [2014-03-08 06:23:32,597] [Preprocessor.java:241] [main] Processing chromosome C15436 Processing chromosome C15436 INFO [2014-03-08 06:23:32,611] [Preprocessor.java:241] [main] Processing chromosome C15440 Processing chromosome C15440 INFO [2014-03-08 06:23:32,667] [Preprocessor.java:241] [main] Processing chromosome C15448 Processing chromosome C15448 INFO [2014-03-08 06:23:32,728] [Preprocessor.java:241] [main] Processing chromosome C15458 Processing chromosome C15458 INFO [2014-03-08 06:23:32,747] [Preprocessor.java:241] [main] Processing chromosome C15460 Processing chromosome C15460 INFO [2014-03-08 06:23:32,843] [Preprocessor.java:241] [main] Processing chromosome C15462 Processing chromosome C15462 INFO [2014-03-08 06:23:32,858] [Preprocessor.java:241] [main] Processing chromosome C15466 Processing chromosome C15466 INFO [2014-03-08 06:23:32,968] [Preprocessor.java:241] [main] Processing chromosome C15498 Processing chromosome C15498 INFO [2014-03-08 06:23:33,048] [Preprocessor.java:241] [main] Processing chromosome C15520 Processing chromosome C15520 INFO [2014-03-08 06:23:33,080] [Preprocessor.java:241] [main] Processing chromosome C15522 Processing chromosome C15522 INFO [2014-03-08 06:23:33,136] [Preprocessor.java:241] [main] Processing chromosome C15538 Processing chromosome C15538 INFO [2014-03-08 06:23:33,189] [Preprocessor.java:241] [main] Processing chromosome C15544 Processing chromosome C15544 INFO [2014-03-08 06:23:33,244] [Preprocessor.java:241] [main] Processing chromosome C15552 Processing chromosome C15552 INFO [2014-03-08 06:23:33,303] [Preprocessor.java:241] [main] Processing chromosome C15560 Processing chromosome C15560 INFO [2014-03-08 06:23:33,371] [Preprocessor.java:241] [main] Processing chromosome C15568 Processing chromosome C15568 INFO [2014-03-08 06:23:33,470] [Preprocessor.java:241] [main] Processing chromosome C15592 Processing chromosome C15592 INFO [2014-03-08 06:23:33,534] [Preprocessor.java:241] [main] Processing chromosome C15646 Processing chromosome C15646 INFO [2014-03-08 06:23:33,601] [Preprocessor.java:241] [main] Processing chromosome C15662 Processing chromosome C15662 INFO [2014-03-08 06:23:33,614] [Preprocessor.java:241] [main] Processing chromosome C15678 Processing chromosome C15678 INFO [2014-03-08 06:23:33,678] [Preprocessor.java:241] [main] Processing chromosome C15696 Processing chromosome C15696 INFO [2014-03-08 06:23:33,706] [Preprocessor.java:241] [main] Processing chromosome C15720 Processing chromosome C15720 INFO [2014-03-08 06:23:33,783] [Preprocessor.java:241] [main] Processing chromosome C15740 Processing chromosome C15740 INFO [2014-03-08 06:23:33,798] [Preprocessor.java:241] [main] Processing chromosome C15750 Processing chromosome C15750 INFO [2014-03-08 06:23:33,883] [Preprocessor.java:241] [main] Processing chromosome C15766 Processing chromosome C15766 INFO [2014-03-08 06:23:33,988] [Preprocessor.java:241] [main] Processing chromosome C15768 Processing chromosome C15768 INFO [2014-03-08 06:23:34,007] [Preprocessor.java:241] [main] Processing chromosome C15788 Processing chromosome C15788 INFO [2014-03-08 06:23:34,040] [Preprocessor.java:241] [main] Processing chromosome C15798 Processing chromosome C15798 INFO [2014-03-08 06:23:34,142] [Preprocessor.java:241] [main] Processing chromosome C15816 Processing chromosome C15816 INFO [2014-03-08 06:23:34,243] [Preprocessor.java:241] [main] Processing chromosome C15818 Processing chromosome C15818 INFO [2014-03-08 06:23:34,281] [Preprocessor.java:241] [main] Processing chromosome C15838 Processing chromosome C15838 INFO [2014-03-08 06:23:34,319] [Preprocessor.java:241] [main] Processing chromosome C15846 Processing chromosome C15846 INFO [2014-03-08 06:23:34,358] [Preprocessor.java:241] [main] Processing chromosome C15848 Processing chromosome C15848 INFO [2014-03-08 06:23:34,445] [Preprocessor.java:241] [main] Processing chromosome C15860 Processing chromosome C15860 INFO [2014-03-08 06:23:34,525] [Preprocessor.java:241] [main] Processing chromosome C1587 Processing chromosome C1587 INFO [2014-03-08 06:23:34,574] [Preprocessor.java:241] [main] Processing chromosome C15892 Processing chromosome C15892 INFO [2014-03-08 06:23:34,663] [Preprocessor.java:241] [main] Processing chromosome C15894 Processing chromosome C15894 INFO [2014-03-08 06:23:34,776] [Preprocessor.java:241] [main] Processing chromosome C15902 Processing chromosome C15902 INFO [2014-03-08 06:23:34,818] [Preprocessor.java:241] [main] Processing chromosome C15904 Processing chromosome C15904 INFO [2014-03-08 06:23:34,893] [Preprocessor.java:241] [main] Processing chromosome C15922 Processing chromosome C15922 INFO [2014-03-08 06:23:34,919] [Preprocessor.java:241] [main] Processing chromosome C15932 Processing chromosome C15932 INFO [2014-03-08 06:23:35,043] [Preprocessor.java:241] [main] Processing chromosome C15934 Processing chromosome C15934 INFO [2014-03-08 06:23:35,124] [Preprocessor.java:241] [main] Processing chromosome C15952 Processing chromosome C15952 INFO [2014-03-08 06:23:35,229] [Preprocessor.java:241] [main] Processing chromosome C15982 Processing chromosome C15982 INFO [2014-03-08 06:23:35,291] [Preprocessor.java:241] [main] Processing chromosome C15992 Processing chromosome C15992 INFO [2014-03-08 06:23:35,401] [Preprocessor.java:241] [main] Processing chromosome C15994 Processing chromosome C15994 INFO [2014-03-08 06:23:35,476] [Preprocessor.java:241] [main] Processing chromosome C16002 Processing chromosome C16002 INFO [2014-03-08 06:23:35,563] [Preprocessor.java:241] [main] Processing chromosome C16004 Processing chromosome C16004 INFO [2014-03-08 06:23:35,605] [Preprocessor.java:241] [main] Processing chromosome C16010 Processing chromosome C16010 INFO [2014-03-08 06:23:35,626] [Preprocessor.java:241] [main] Processing chromosome C16014 Processing chromosome C16014 INFO [2014-03-08 06:23:35,656] [Preprocessor.java:241] [main] Processing chromosome C16022 Processing chromosome C16022 INFO [2014-03-08 06:23:35,747] [Preprocessor.java:241] [main] Processing chromosome C16024 Processing chromosome C16024 INFO [2014-03-08 06:23:35,760] [Preprocessor.java:241] [main] Processing chromosome C16042 Processing chromosome C16042 INFO [2014-03-08 06:23:35,837] [Preprocessor.java:241] [main] Processing chromosome C16058 Processing chromosome C16058 INFO [2014-03-08 06:23:35,896] [Preprocessor.java:241] [main] Processing chromosome C16062 Processing chromosome C16062 INFO [2014-03-08 06:23:35,921] [Preprocessor.java:241] [main] Processing chromosome C16066 Processing chromosome C16066 INFO [2014-03-08 06:23:35,975] [Preprocessor.java:241] [main] Processing chromosome C16070 Processing chromosome C16070 INFO [2014-03-08 06:23:36,010] [Preprocessor.java:241] [main] Processing chromosome C16084 Processing chromosome C16084 INFO [2014-03-08 06:23:36,025] [Preprocessor.java:241] [main] Processing chromosome C16088 Processing chromosome C16088 INFO [2014-03-08 06:23:36,064] [Preprocessor.java:241] [main] Processing chromosome C16094 Processing chromosome C16094 INFO [2014-03-08 06:23:36,077] [Preprocessor.java:241] [main] Processing chromosome C16102 Processing chromosome C16102 INFO [2014-03-08 06:23:36,148] [Preprocessor.java:241] [main] Processing chromosome C16106 Processing chromosome C16106 INFO [2014-03-08 06:23:36,162] [Preprocessor.java:241] [main] Processing chromosome C16108 Processing chromosome C16108 INFO [2014-03-08 06:23:36,182] [Preprocessor.java:241] [main] Processing chromosome C16110 Processing chromosome C16110 INFO [2014-03-08 06:23:36,231] [Preprocessor.java:241] [main] Processing chromosome C16144 Processing chromosome C16144 INFO [2014-03-08 06:23:36,288] [Preprocessor.java:241] [main] Processing chromosome C1619 Processing chromosome C1619 INFO [2014-03-08 06:23:36,369] [Preprocessor.java:241] [main] Processing chromosome C16192 Processing chromosome C16192 INFO [2014-03-08 06:23:36,441] [Preprocessor.java:241] [main] Processing chromosome C16204 Processing chromosome C16204 INFO [2014-03-08 06:23:36,505] [Preprocessor.java:241] [main] Processing chromosome C16208 Processing chromosome C16208 INFO [2014-03-08 06:23:36,523] [Preprocessor.java:241] [main] Processing chromosome C16218 Processing chromosome C16218 INFO [2014-03-08 06:23:36,562] [Preprocessor.java:241] [main] Processing chromosome C1623 Processing chromosome C1623 INFO [2014-03-08 06:23:36,605] [Preprocessor.java:241] [main] Processing chromosome C16244 Processing chromosome C16244 INFO [2014-03-08 06:23:36,662] [Preprocessor.java:241] [main] Processing chromosome C16250 Processing chromosome C16250 INFO [2014-03-08 06:23:36,739] [Preprocessor.java:241] [main] Processing chromosome C16262 Processing chromosome C16262 INFO [2014-03-08 06:23:36,795] [Preprocessor.java:241] [main] Processing chromosome C16280 Processing chromosome C16280 INFO [2014-03-08 06:23:36,837] [Preprocessor.java:241] [main] Processing chromosome C16296 Processing chromosome C16296 INFO [2014-03-08 06:23:36,861] [Preprocessor.java:241] [main] Processing chromosome C16312 Processing chromosome C16312 INFO [2014-03-08 06:23:36,895] [Preprocessor.java:241] [main] Processing chromosome C16318 Processing chromosome C16318 INFO [2014-03-08 06:23:36,930] [Preprocessor.java:241] [main] Processing chromosome C16338 Processing chromosome C16338 INFO [2014-03-08 06:23:37,030] [Preprocessor.java:241] [main] Processing chromosome C16390 Processing chromosome C16390 INFO [2014-03-08 06:23:37,141] [Preprocessor.java:241] [main] Processing chromosome C16392 Processing chromosome C16392 INFO [2014-03-08 06:23:37,190] [Preprocessor.java:241] [main] Processing chromosome C16400 Processing chromosome C16400 INFO [2014-03-08 06:23:37,247] [Preprocessor.java:241] [main] Processing chromosome C16404 Processing chromosome C16404 INFO [2014-03-08 06:23:37,271] [Preprocessor.java:241] [main] Processing chromosome C16420 Processing chromosome C16420 INFO [2014-03-08 06:23:37,332] [Preprocessor.java:241] [main] Processing chromosome C16434 Processing chromosome C16434 INFO [2014-03-08 06:23:37,373] [Preprocessor.java:241] [main] Processing chromosome C16446 Processing chromosome C16446 INFO [2014-03-08 06:23:37,401] [Preprocessor.java:241] [main] Processing chromosome C16458 Processing chromosome C16458 INFO [2014-03-08 06:23:37,474] [Preprocessor.java:241] [main] Processing chromosome C16486 Processing chromosome C16486 INFO [2014-03-08 06:23:37,527] [Preprocessor.java:241] [main] Processing chromosome C16492 Processing chromosome C16492 INFO [2014-03-08 06:23:37,540] [Preprocessor.java:241] [main] Processing chromosome C16512 Processing chromosome C16512 INFO [2014-03-08 06:23:37,611] [Preprocessor.java:241] [main] Processing chromosome C16516 Processing chromosome C16516 INFO [2014-03-08 06:23:37,644] [Preprocessor.java:241] [main] Processing chromosome C16520 Processing chromosome C16520 INFO [2014-03-08 06:23:37,691] [Preprocessor.java:241] [main] Processing chromosome C16540 Processing chromosome C16540 INFO [2014-03-08 06:23:37,737] [Preprocessor.java:241] [main] Processing chromosome C16542 Processing chromosome C16542 INFO [2014-03-08 06:23:37,773] [Preprocessor.java:241] [main] Processing chromosome C16554 Processing chromosome C16554 INFO [2014-03-08 06:23:37,840] [Preprocessor.java:241] [main] Processing chromosome C16556 Processing chromosome C16556 INFO [2014-03-08 06:23:37,885] [Preprocessor.java:241] [main] Processing chromosome C16558 Processing chromosome C16558 INFO [2014-03-08 06:23:37,912] [Preprocessor.java:241] [main] Processing chromosome C16564 Processing chromosome C16564 INFO [2014-03-08 06:23:37,954] [Preprocessor.java:241] [main] Processing chromosome C16566 Processing chromosome C16566 INFO [2014-03-08 06:23:37,975] [Preprocessor.java:241] [main] Processing chromosome C16582 Processing chromosome C16582 INFO [2014-03-08 06:23:38,030] [Preprocessor.java:241] [main] Processing chromosome C16604 Processing chromosome C16604 INFO [2014-03-08 06:23:38,052] [Preprocessor.java:241] [main] Processing chromosome C16606 Processing chromosome C16606 INFO [2014-03-08 06:23:38,114] [Preprocessor.java:241] [main] Processing chromosome C16608 Processing chromosome C16608 INFO [2014-03-08 06:23:38,139] [Preprocessor.java:241] [main] Processing chromosome C1661 Processing chromosome C1661 INFO [2014-03-08 06:23:38,206] [Preprocessor.java:241] [main] Processing chromosome C16612 Processing chromosome C16612 INFO [2014-03-08 06:23:38,230] [Preprocessor.java:241] [main] Processing chromosome C16622 Processing chromosome C16622 INFO [2014-03-08 06:23:38,269] [Preprocessor.java:241] [main] Processing chromosome C16636 Processing chromosome C16636 INFO [2014-03-08 06:23:38,289] [Preprocessor.java:241] [main] Processing chromosome C16650 Processing chromosome C16650 INFO [2014-03-08 06:23:38,300] [Preprocessor.java:241] [main] Processing chromosome C16666 Processing chromosome C16666 INFO [2014-03-08 06:23:38,324] [Preprocessor.java:241] [main] Processing chromosome C16700 Processing chromosome C16700 INFO [2014-03-08 06:23:38,381] [Preprocessor.java:241] [main] Processing chromosome C16710 Processing chromosome C16710 INFO [2014-03-08 06:23:38,437] [Preprocessor.java:241] [main] Processing chromosome C16760 Processing chromosome C16760 INFO [2014-03-08 06:23:38,511] [Preprocessor.java:241] [main] Processing chromosome C16766 Processing chromosome C16766 INFO [2014-03-08 06:23:38,546] [Preprocessor.java:241] [main] Processing chromosome C16786 Processing chromosome C16786 INFO [2014-03-08 06:23:38,661] [Preprocessor.java:241] [main] Processing chromosome C16796 Processing chromosome C16796 INFO [2014-03-08 06:23:38,672] [Preprocessor.java:241] [main] Processing chromosome C16798 Processing chromosome C16798 INFO [2014-03-08 06:23:38,745] [Preprocessor.java:241] [main] Processing chromosome C16820 Processing chromosome C16820 INFO [2014-03-08 06:23:38,785] [Preprocessor.java:241] [main] Processing chromosome C16854 Processing chromosome C16854 INFO [2014-03-08 06:23:38,838] [Preprocessor.java:241] [main] Processing chromosome C16864 Processing chromosome C16864 INFO [2014-03-08 06:23:38,876] [Preprocessor.java:241] [main] Processing chromosome C16870 Processing chromosome C16870 INFO [2014-03-08 06:23:38,921] [Preprocessor.java:241] [main] Processing chromosome C16936 Processing chromosome C16936 INFO [2014-03-08 06:23:39,000] [Preprocessor.java:241] [main] Processing chromosome C16948 Processing chromosome C16948 INFO [2014-03-08 06:23:39,026] [Preprocessor.java:241] [main] Processing chromosome C16958 Processing chromosome C16958 INFO [2014-03-08 06:23:39,054] [Preprocessor.java:241] [main] Processing chromosome C16982 Processing chromosome C16982 INFO [2014-03-08 06:23:39,065] [Preprocessor.java:241] [main] Processing chromosome C17000 Processing chromosome C17000 INFO [2014-03-08 06:23:39,091] [Preprocessor.java:241] [main] Processing chromosome C17016 Processing chromosome C17016 INFO [2014-03-08 06:23:39,128] [Preprocessor.java:241] [main] Processing chromosome C17028 Processing chromosome C17028 INFO [2014-03-08 06:23:39,182] [Preprocessor.java:241] [main] Processing chromosome C17036 Processing chromosome C17036 INFO [2014-03-08 06:23:39,209] [Preprocessor.java:241] [main] Processing chromosome C17038 Processing chromosome C17038 INFO [2014-03-08 06:23:39,229] [Preprocessor.java:241] [main] Processing chromosome C17044 Processing chromosome C17044 INFO [2014-03-08 06:23:39,250] [Preprocessor.java:241] [main] Processing chromosome C17052 Processing chromosome C17052 INFO [2014-03-08 06:23:39,321] [Preprocessor.java:241] [main] Processing chromosome C17056 Processing chromosome C17056 INFO [2014-03-08 06:23:39,373] [Preprocessor.java:241] [main] Processing chromosome C17064 Processing chromosome C17064 INFO [2014-03-08 06:23:39,416] [Preprocessor.java:241] [main] Processing chromosome C17076 Processing chromosome C17076 INFO [2014-03-08 06:23:39,442] [Preprocessor.java:241] [main] Processing chromosome C17082 Processing chromosome C17082 INFO [2014-03-08 06:23:39,451] [Preprocessor.java:241] [main] Processing chromosome C17098 Processing chromosome C17098 INFO [2014-03-08 06:23:39,500] [Preprocessor.java:241] [main] Processing chromosome C17100 Processing chromosome C17100 INFO [2014-03-08 06:23:39,545] [Preprocessor.java:241] [main] Processing chromosome C17102 Processing chromosome C17102 INFO [2014-03-08 06:23:39,603] [Preprocessor.java:241] [main] Processing chromosome C17108 Processing chromosome C17108 INFO [2014-03-08 06:23:39,655] [Preprocessor.java:241] [main] Processing chromosome C17130 Processing chromosome C17130 INFO [2014-03-08 06:23:39,679] [Preprocessor.java:241] [main] Processing chromosome C17134 Processing chromosome C17134 INFO [2014-03-08 06:23:39,737] [Preprocessor.java:241] [main] Processing chromosome C17150 Processing chromosome C17150 INFO [2014-03-08 06:23:39,766] [Preprocessor.java:241] [main] Processing chromosome C17158 Processing chromosome C17158 INFO [2014-03-08 06:23:39,841] [Preprocessor.java:241] [main] Processing chromosome C17170 Processing chromosome C17170 INFO [2014-03-08 06:23:39,867] [Preprocessor.java:241] [main] Processing chromosome C17178 Processing chromosome C17178 INFO [2014-03-08 06:23:39,899] [Preprocessor.java:241] [main] Processing chromosome C17186 Processing chromosome C17186 INFO [2014-03-08 06:23:39,937] [Preprocessor.java:241] [main] Processing chromosome C17212 Processing chromosome C17212 INFO [2014-03-08 06:23:39,972] [Preprocessor.java:241] [main] Processing chromosome C17244 Processing chromosome C17244 INFO [2014-03-08 06:23:39,998] [Preprocessor.java:241] [main] Processing chromosome C17262 Processing chromosome C17262 INFO [2014-03-08 06:23:40,034] [Preprocessor.java:241] [main] Processing chromosome C17274 Processing chromosome C17274 INFO [2014-03-08 06:23:40,094] [Preprocessor.java:241] [main] Processing chromosome C17316 Processing chromosome C17316 INFO [2014-03-08 06:23:40,199] [Preprocessor.java:241] [main] Processing chromosome C17332 Processing chromosome C17332 INFO [2014-03-08 06:23:40,214] [Preprocessor.java:241] [main] Processing chromosome C17348 Processing chromosome C17348 INFO [2014-03-08 06:23:40,236] [Preprocessor.java:241] [main] Processing chromosome C17358 Processing chromosome C17358 INFO [2014-03-08 06:23:40,343] [Preprocessor.java:241] [main] Processing chromosome C17362 Processing chromosome C17362 INFO [2014-03-08 06:23:40,385] [Preprocessor.java:241] [main] Processing chromosome C17376 Processing chromosome C17376 INFO [2014-03-08 06:23:40,445] [Preprocessor.java:241] [main] Processing chromosome C17394 Processing chromosome C17394 INFO [2014-03-08 06:23:40,470] [Preprocessor.java:241] [main] Processing chromosome C17398 Processing chromosome C17398 INFO [2014-03-08 06:23:40,480] [Preprocessor.java:241] [main] Processing chromosome C17402 Processing chromosome C17402 INFO [2014-03-08 06:23:40,560] [Preprocessor.java:241] [main] Processing chromosome C17426 Processing chromosome C17426 INFO [2014-03-08 06:23:40,586] [Preprocessor.java:241] [main] Processing chromosome C17438 Processing chromosome C17438 INFO [2014-03-08 06:23:40,608] [Preprocessor.java:241] [main] Processing chromosome C17470 Processing chromosome C17470 INFO [2014-03-08 06:23:40,628] [Preprocessor.java:241] [main] Processing chromosome C17472 Processing chromosome C17472 INFO [2014-03-08 06:23:40,710] [Preprocessor.java:241] [main] Processing chromosome C17476 Processing chromosome C17476 INFO [2014-03-08 06:23:40,765] [Preprocessor.java:241] [main] Processing chromosome C17486 Processing chromosome C17486 INFO [2014-03-08 06:23:40,805] [Preprocessor.java:241] [main] Processing chromosome C17494 Processing chromosome C17494 INFO [2014-03-08 06:23:40,922] [Preprocessor.java:241] [main] Processing chromosome C17514 Processing chromosome C17514 INFO [2014-03-08 06:23:41,001] [Preprocessor.java:241] [main] Processing chromosome C17516 Processing chromosome C17516 INFO [2014-03-08 06:23:41,028] [Preprocessor.java:241] [main] Processing chromosome C17526 Processing chromosome C17526 INFO [2014-03-08 06:23:41,110] [Preprocessor.java:241] [main] Processing chromosome C17540 Processing chromosome C17540 INFO [2014-03-08 06:23:41,167] [Preprocessor.java:241] [main] Processing chromosome C17556 Processing chromosome C17556 INFO [2014-03-08 06:23:41,231] [Preprocessor.java:241] [main] Processing chromosome C17574 Processing chromosome C17574 INFO [2014-03-08 06:23:41,315] [Preprocessor.java:241] [main] Processing chromosome C17580 Processing chromosome C17580 INFO [2014-03-08 06:23:41,383] [Preprocessor.java:241] [main] Processing chromosome C17588 Processing chromosome C17588 INFO [2014-03-08 06:23:41,406] [Preprocessor.java:241] [main] Processing chromosome C17602 Processing chromosome C17602 INFO [2014-03-08 06:23:41,433] [Preprocessor.java:241] [main] Processing chromosome C17604 Processing chromosome C17604 INFO [2014-03-08 06:23:41,484] [Preprocessor.java:241] [main] Processing chromosome C17608 Processing chromosome C17608 INFO [2014-03-08 06:23:41,515] [Preprocessor.java:241] [main] Processing chromosome C17630 Processing chromosome C17630 INFO [2014-03-08 06:23:41,550] [Preprocessor.java:241] [main] Processing chromosome C17636 Processing chromosome C17636 INFO [2014-03-08 06:23:41,610] [Preprocessor.java:241] [main] Processing chromosome C17660 Processing chromosome C17660 INFO [2014-03-08 06:23:41,673] [Preprocessor.java:241] [main] Processing chromosome C17662 Processing chromosome C17662 INFO [2014-03-08 06:23:41,706] [Preprocessor.java:241] [main] Processing chromosome C17664 Processing chromosome C17664 INFO [2014-03-08 06:23:41,718] [Preprocessor.java:241] [main] Processing chromosome C17678 Processing chromosome C17678 INFO [2014-03-08 06:23:41,741] [Preprocessor.java:241] [main] Processing chromosome C17682 Processing chromosome C17682 INFO [2014-03-08 06:23:41,752] [Preprocessor.java:241] [main] Processing chromosome C17684 Processing chromosome C17684 INFO [2014-03-08 06:23:41,793] [Preprocessor.java:241] [main] Processing chromosome C17700 Processing chromosome C17700 INFO [2014-03-08 06:23:41,804] [Preprocessor.java:241] [main] Processing chromosome C17710 Processing chromosome C17710 INFO [2014-03-08 06:23:41,829] [Preprocessor.java:241] [main] Processing chromosome C17730 Processing chromosome C17730 INFO [2014-03-08 06:23:41,851] [Preprocessor.java:241] [main] Processing chromosome C17734 Processing chromosome C17734 INFO [2014-03-08 06:23:41,861] [Preprocessor.java:241] [main] Processing chromosome C17738 Processing chromosome C17738 INFO [2014-03-08 06:23:41,935] [Preprocessor.java:241] [main] Processing chromosome C17746 Processing chromosome C17746 INFO [2014-03-08 06:23:42,005] [Preprocessor.java:241] [main] Processing chromosome C17748 Processing chromosome C17748 INFO [2014-03-08 06:23:42,023] [Preprocessor.java:241] [main] Processing chromosome C17762 Processing chromosome C17762 INFO [2014-03-08 06:23:42,075] [Preprocessor.java:241] [main] Processing chromosome C17770 Processing chromosome C17770 INFO [2014-03-08 06:23:42,102] [Preprocessor.java:241] [main] Processing chromosome C17772 Processing chromosome C17772 INFO [2014-03-08 06:23:42,111] [Preprocessor.java:241] [main] Processing chromosome C17786 Processing chromosome C17786 INFO [2014-03-08 06:23:42,146] [Preprocessor.java:241] [main] Processing chromosome C17794 Processing chromosome C17794 INFO [2014-03-08 06:23:42,178] [Preprocessor.java:241] [main] Processing chromosome C1781 Processing chromosome C1781 INFO [2014-03-08 06:23:42,239] [Preprocessor.java:241] [main] Processing chromosome C17814 Processing chromosome C17814 INFO [2014-03-08 06:23:42,286] [Preprocessor.java:241] [main] Processing chromosome C17840 Processing chromosome C17840 INFO [2014-03-08 06:23:42,318] [Preprocessor.java:241] [main] Processing chromosome C17852 Processing chromosome C17852 INFO [2014-03-08 06:23:42,338] [Preprocessor.java:241] [main] Processing chromosome C17854 Processing chromosome C17854 INFO [2014-03-08 06:23:42,346] [Preprocessor.java:241] [main] Processing chromosome C17888 Processing chromosome C17888 INFO [2014-03-08 06:23:42,404] [Preprocessor.java:241] [main] Processing chromosome C1789 Processing chromosome C1789 INFO [2014-03-08 06:23:42,466] [Preprocessor.java:241] [main] Processing chromosome C17896 Processing chromosome C17896 INFO [2014-03-08 06:23:42,487] [Preprocessor.java:241] [main] Processing chromosome C17906 Processing chromosome C17906 INFO [2014-03-08 06:23:42,512] [Preprocessor.java:241] [main] Processing chromosome C17940 Processing chromosome C17940 INFO [2014-03-08 06:23:42,573] [Preprocessor.java:241] [main] Processing chromosome C17944 Processing chromosome C17944 INFO [2014-03-08 06:23:42,591] [Preprocessor.java:241] [main] Processing chromosome C17946 Processing chromosome C17946 INFO [2014-03-08 06:23:42,610] [Preprocessor.java:241] [main] Processing chromosome C1795 Processing chromosome C1795 INFO [2014-03-08 06:23:42,650] [Preprocessor.java:241] [main] Processing chromosome C17950 Processing chromosome C17950 INFO [2014-03-08 06:23:42,702] [Preprocessor.java:241] [main] Processing chromosome C17960 Processing chromosome C17960 INFO [2014-03-08 06:23:42,764] [Preprocessor.java:241] [main] Processing chromosome C17998 Processing chromosome C17998 INFO [2014-03-08 06:23:42,825] [Preprocessor.java:241] [main] Processing chromosome C18004 Processing chromosome C18004 INFO [2014-03-08 06:23:42,862] [Preprocessor.java:241] [main] Processing chromosome C18008 Processing chromosome C18008 INFO [2014-03-08 06:23:42,918] [Preprocessor.java:241] [main] Processing chromosome C18010 Processing chromosome C18010 INFO [2014-03-08 06:23:42,932] [Preprocessor.java:241] [main] Processing chromosome C18046 Processing chromosome C18046 INFO [2014-03-08 06:23:42,963] [Preprocessor.java:241] [main] Processing chromosome C18050 Processing chromosome C18050 INFO [2014-03-08 06:23:43,022] [Preprocessor.java:241] [main] Processing chromosome C18054 Processing chromosome C18054 INFO [2014-03-08 06:23:43,095] [Preprocessor.java:241] [main] Processing chromosome C181 Processing chromosome C181 INFO [2014-03-08 06:23:43,138] [Preprocessor.java:241] [main] Processing chromosome C18104 Processing chromosome C18104 INFO [2014-03-08 06:23:43,212] [Preprocessor.java:241] [main] Processing chromosome C18108 Processing chromosome C18108 INFO [2014-03-08 06:23:43,266] [Preprocessor.java:241] [main] Processing chromosome C18122 Processing chromosome C18122 INFO [2014-03-08 06:23:43,328] [Preprocessor.java:241] [main] Processing chromosome C18128 Processing chromosome C18128 INFO [2014-03-08 06:23:43,388] [Preprocessor.java:241] [main] Processing chromosome C18136 Processing chromosome C18136 INFO [2014-03-08 06:23:43,456] [Preprocessor.java:241] [main] Processing chromosome C18168 Processing chromosome C18168 INFO [2014-03-08 06:23:43,470] [Preprocessor.java:241] [main] Processing chromosome C18184 Processing chromosome C18184 INFO [2014-03-08 06:23:43,524] [Preprocessor.java:241] [main] Processing chromosome C18204 Processing chromosome C18204 INFO [2014-03-08 06:23:43,535] [Preprocessor.java:241] [main] Processing chromosome C18226 Processing chromosome C18226 INFO [2014-03-08 06:23:43,592] [Preprocessor.java:241] [main] Processing chromosome C18238 Processing chromosome C18238 INFO [2014-03-08 06:23:43,653] [Preprocessor.java:241] [main] Processing chromosome C18244 Processing chromosome C18244 INFO [2014-03-08 06:23:43,708] [Preprocessor.java:241] [main] Processing chromosome C18254 Processing chromosome C18254 INFO [2014-03-08 06:23:43,752] [Preprocessor.java:241] [main] Processing chromosome C18256 Processing chromosome C18256 INFO [2014-03-08 06:23:43,777] [Preprocessor.java:241] [main] Processing chromosome C18278 Processing chromosome C18278 INFO [2014-03-08 06:23:43,847] [Preprocessor.java:241] [main] Processing chromosome C18288 Processing chromosome C18288 INFO [2014-03-08 06:23:43,930] [Preprocessor.java:241] [main] Processing chromosome C1829 Processing chromosome C1829 INFO [2014-03-08 06:23:43,953] [Preprocessor.java:241] [main] Processing chromosome C18316 Processing chromosome C18316 INFO [2014-03-08 06:23:43,995] [Preprocessor.java:241] [main] Processing chromosome C1833 Processing chromosome C1833 INFO [2014-03-08 06:23:44,073] [Preprocessor.java:241] [main] Processing chromosome C18334 Processing chromosome C18334 INFO [2014-03-08 06:23:44,083] [Preprocessor.java:241] [main] Processing chromosome C18346 Processing chromosome C18346 INFO [2014-03-08 06:23:44,150] [Preprocessor.java:241] [main] Processing chromosome C18366 Processing chromosome C18366 INFO [2014-03-08 06:23:44,182] [Preprocessor.java:241] [main] Processing chromosome C18378 Processing chromosome C18378 INFO [2014-03-08 06:23:44,196] [Preprocessor.java:241] [main] Processing chromosome C18394 Processing chromosome C18394 INFO [2014-03-08 06:23:44,219] [Preprocessor.java:241] [main] Processing chromosome C18398 Processing chromosome C18398 INFO [2014-03-08 06:23:44,263] [Preprocessor.java:241] [main] Processing chromosome C18414 Processing chromosome C18414 INFO [2014-03-08 06:23:44,313] [Preprocessor.java:241] [main] Processing chromosome C18418 Processing chromosome C18418 INFO [2014-03-08 06:23:44,342] [Preprocessor.java:241] [main] Processing chromosome C18428 Processing chromosome C18428 INFO [2014-03-08 06:23:44,375] [Preprocessor.java:241] [main] Processing chromosome C1843 Processing chromosome C1843 INFO [2014-03-08 06:23:44,436] [Preprocessor.java:241] [main] Processing chromosome C18430 Processing chromosome C18430 INFO [2014-03-08 06:23:44,467] [Preprocessor.java:241] [main] Processing chromosome C18434 Processing chromosome C18434 INFO [2014-03-08 06:23:44,499] [Preprocessor.java:241] [main] Processing chromosome C18446 Processing chromosome C18446 INFO [2014-03-08 06:23:44,532] [Preprocessor.java:241] [main] Processing chromosome C18448 Processing chromosome C18448 INFO [2014-03-08 06:23:44,577] [Preprocessor.java:241] [main] Processing chromosome C18450 Processing chromosome C18450 INFO [2014-03-08 06:23:44,619] [Preprocessor.java:241] [main] Processing chromosome C18492 Processing chromosome C18492 INFO [2014-03-08 06:23:44,680] [Preprocessor.java:241] [main] Processing chromosome C18508 Processing chromosome C18508 INFO [2014-03-08 06:23:44,752] [Preprocessor.java:241] [main] Processing chromosome C18522 Processing chromosome C18522 INFO [2014-03-08 06:23:44,773] [Preprocessor.java:241] [main] Processing chromosome C18538 Processing chromosome C18538 INFO [2014-03-08 06:23:44,851] [Preprocessor.java:241] [main] Processing chromosome C18546 Processing chromosome C18546 INFO [2014-03-08 06:23:44,920] [Preprocessor.java:241] [main] Processing chromosome C18548 Processing chromosome C18548 INFO [2014-03-08 06:23:44,935] [Preprocessor.java:241] [main] Processing chromosome C18572 Processing chromosome C18572 INFO [2014-03-08 06:23:44,976] [Preprocessor.java:241] [main] Processing chromosome C18578 Processing chromosome C18578 INFO [2014-03-08 06:23:45,034] [Preprocessor.java:241] [main] Processing chromosome C18580 Processing chromosome C18580 INFO [2014-03-08 06:23:45,103] [Preprocessor.java:241] [main] Processing chromosome C18600 Processing chromosome C18600 INFO [2014-03-08 06:23:45,175] [Preprocessor.java:241] [main] Processing chromosome C1861 Processing chromosome C1861 INFO [2014-03-08 06:23:45,262] [Preprocessor.java:241] [main] Processing chromosome C18638 Processing chromosome C18638 INFO [2014-03-08 06:23:45,332] [Preprocessor.java:241] [main] Processing chromosome C18652 Processing chromosome C18652 INFO [2014-03-08 06:23:45,426] [Preprocessor.java:241] [main] Processing chromosome C18664 Processing chromosome C18664 INFO [2014-03-08 06:23:45,436] [Preprocessor.java:241] [main] Processing chromosome C18674 Processing chromosome C18674 INFO [2014-03-08 06:23:45,532] [Preprocessor.java:241] [main] Processing chromosome C18682 Processing chromosome C18682 INFO [2014-03-08 06:23:45,548] [Preprocessor.java:241] [main] Processing chromosome C18688 Processing chromosome C18688 INFO [2014-03-08 06:23:45,609] [Preprocessor.java:241] [main] Processing chromosome C18692 Processing chromosome C18692 INFO [2014-03-08 06:23:45,621] [Preprocessor.java:241] [main] Processing chromosome C18708 Processing chromosome C18708 INFO [2014-03-08 06:23:45,690] [Preprocessor.java:241] [main] Processing chromosome C18722 Processing chromosome C18722 INFO [2014-03-08 06:23:45,722] [Preprocessor.java:241] [main] Processing chromosome C18726 Processing chromosome C18726 INFO [2014-03-08 06:23:45,743] [Preprocessor.java:241] [main] Processing chromosome C18728 Processing chromosome C18728 INFO [2014-03-08 06:23:45,764] [Preprocessor.java:241] [main] Processing chromosome C18736 Processing chromosome C18736 INFO [2014-03-08 06:23:45,774] [Preprocessor.java:241] [main] Processing chromosome C18744 Processing chromosome C18744 INFO [2014-03-08 06:23:45,816] [Preprocessor.java:241] [main] Processing chromosome C18752 Processing chromosome C18752 INFO [2014-03-08 06:23:45,844] [Preprocessor.java:241] [main] Processing chromosome C18758 Processing chromosome C18758 INFO [2014-03-08 06:23:45,901] [Preprocessor.java:241] [main] Processing chromosome C18772 Processing chromosome C18772 INFO [2014-03-08 06:23:45,920] [Preprocessor.java:241] [main] Processing chromosome C18774 Processing chromosome C18774 INFO [2014-03-08 06:23:45,992] [Preprocessor.java:241] [main] Processing chromosome C18792 Processing chromosome C18792 INFO [2014-03-08 06:23:46,069] [Preprocessor.java:241] [main] Processing chromosome C18802 Processing chromosome C18802 INFO [2014-03-08 06:23:46,077] [Preprocessor.java:241] [main] Processing chromosome C18810 Processing chromosome C18810 INFO [2014-03-08 06:23:46,096] [Preprocessor.java:241] [main] Processing chromosome C18824 Processing chromosome C18824 INFO [2014-03-08 06:23:46,115] [Preprocessor.java:241] [main] Processing chromosome C18832 Processing chromosome C18832 INFO [2014-03-08 06:23:46,186] [Preprocessor.java:241] [main] Processing chromosome C18836 Processing chromosome C18836 INFO [2014-03-08 06:23:46,204] [Preprocessor.java:241] [main] Processing chromosome C18850 Processing chromosome C18850 INFO [2014-03-08 06:23:46,237] [Preprocessor.java:241] [main] Processing chromosome C18858 Processing chromosome C18858 INFO [2014-03-08 06:23:46,261] [Preprocessor.java:241] [main] Processing chromosome C18860 Processing chromosome C18860 INFO [2014-03-08 06:23:46,320] [Preprocessor.java:241] [main] Processing chromosome C18862 Processing chromosome C18862 INFO [2014-03-08 06:23:46,356] [Preprocessor.java:241] [main] Processing chromosome C1887 Processing chromosome C1887 INFO [2014-03-08 06:23:46,435] [Preprocessor.java:241] [main] Processing chromosome C18884 Processing chromosome C18884 INFO [2014-03-08 06:23:46,443] [Preprocessor.java:241] [main] Processing chromosome C18924 Processing chromosome C18924 INFO [2014-03-08 06:23:46,484] [Preprocessor.java:241] [main] Processing chromosome C18938 Processing chromosome C18938 INFO [2014-03-08 06:23:46,557] [Preprocessor.java:241] [main] Processing chromosome C18950 Processing chromosome C18950 INFO [2014-03-08 06:23:46,587] [Preprocessor.java:241] [main] Processing chromosome C18952 Processing chromosome C18952 INFO [2014-03-08 06:23:46,599] [Preprocessor.java:241] [main] Processing chromosome C18966 Processing chromosome C18966 INFO [2014-03-08 06:23:46,617] [Preprocessor.java:241] [main] Processing chromosome C18968 Processing chromosome C18968 INFO [2014-03-08 06:23:46,686] [Preprocessor.java:241] [main] Processing chromosome C18974 Processing chromosome C18974 INFO [2014-03-08 06:23:46,726] [Preprocessor.java:241] [main] Processing chromosome C18976 Processing chromosome C18976 INFO [2014-03-08 06:23:46,812] [Preprocessor.java:241] [main] Processing chromosome C18996 Processing chromosome C18996 INFO [2014-03-08 06:23:46,847] [Preprocessor.java:241] [main] Processing chromosome C19008 Processing chromosome C19008 INFO [2014-03-08 06:23:46,872] [Preprocessor.java:241] [main] Processing chromosome C19018 Processing chromosome C19018 INFO [2014-03-08 06:23:46,942] [Preprocessor.java:241] [main] Processing chromosome C19028 Processing chromosome C19028 INFO [2014-03-08 06:23:46,976] [Preprocessor.java:241] [main] Processing chromosome C19042 Processing chromosome C19042 INFO [2014-03-08 06:23:47,058] [Preprocessor.java:241] [main] Processing chromosome C19058 Processing chromosome C19058 INFO [2014-03-08 06:23:47,076] [Preprocessor.java:241] [main] Processing chromosome C19072 Processing chromosome C19072 INFO [2014-03-08 06:23:47,107] [Preprocessor.java:241] [main] Processing chromosome C19082 Processing chromosome C19082 INFO [2014-03-08 06:23:47,138] [Preprocessor.java:241] [main] Processing chromosome C19094 Processing chromosome C19094 INFO [2014-03-08 06:23:47,151] [Preprocessor.java:241] [main] Processing chromosome C19100 Processing chromosome C19100 INFO [2014-03-08 06:23:47,214] [Preprocessor.java:241] [main] Processing chromosome C19108 Processing chromosome C19108 INFO [2014-03-08 06:23:47,276] [Preprocessor.java:241] [main] Processing chromosome C19112 Processing chromosome C19112 INFO [2014-03-08 06:23:47,291] [Preprocessor.java:241] [main] Processing chromosome C19122 Processing chromosome C19122 INFO [2014-03-08 06:23:47,305] [Preprocessor.java:241] [main] Processing chromosome C19142 Processing chromosome C19142 INFO [2014-03-08 06:23:47,347] [Preprocessor.java:241] [main] Processing chromosome C19148 Processing chromosome C19148 INFO [2014-03-08 06:23:47,406] [Preprocessor.java:241] [main] Processing chromosome C19160 Processing chromosome C19160 INFO [2014-03-08 06:23:47,414] [Preprocessor.java:241] [main] Processing chromosome C19162 Processing chromosome C19162 INFO [2014-03-08 06:23:47,428] [Preprocessor.java:241] [main] Processing chromosome C19178 Processing chromosome C19178 INFO [2014-03-08 06:23:47,446] [Preprocessor.java:241] [main] Processing chromosome C19194 Processing chromosome C19194 INFO [2014-03-08 06:23:47,520] [Preprocessor.java:241] [main] Processing chromosome C19200 Processing chromosome C19200 INFO [2014-03-08 06:23:47,575] [Preprocessor.java:241] [main] Processing chromosome C19204 Processing chromosome C19204 INFO [2014-03-08 06:23:47,612] [Preprocessor.java:241] [main] Processing chromosome C19224 Processing chromosome C19224 INFO [2014-03-08 06:23:47,641] [Preprocessor.java:241] [main] Processing chromosome C19228 Processing chromosome C19228 INFO [2014-03-08 06:23:47,733] [Preprocessor.java:241] [main] Processing chromosome C19242 Processing chromosome C19242 INFO [2014-03-08 06:23:47,801] [Preprocessor.java:241] [main] Processing chromosome C19250 Processing chromosome C19250 INFO [2014-03-08 06:23:47,870] [Preprocessor.java:241] [main] Processing chromosome C19260 Processing chromosome C19260 INFO [2014-03-08 06:23:47,899] [Preprocessor.java:241] [main] Processing chromosome C19270 Processing chromosome C19270 INFO [2014-03-08 06:23:47,919] [Preprocessor.java:241] [main] Processing chromosome C19276 Processing chromosome C19276 INFO [2014-03-08 06:23:47,938] [Preprocessor.java:241] [main] Processing chromosome C19288 Processing chromosome C19288 INFO [2014-03-08 06:23:47,997] [Preprocessor.java:241] [main] Processing chromosome C19298 Processing chromosome C19298 INFO [2014-03-08 06:23:48,018] [Preprocessor.java:241] [main] Processing chromosome C19300 Processing chromosome C19300 INFO [2014-03-08 06:23:48,085] [Preprocessor.java:241] [main] Processing chromosome C19308 Processing chromosome C19308 INFO [2014-03-08 06:23:48,140] [Preprocessor.java:241] [main] Processing chromosome C19314 Processing chromosome C19314 INFO [2014-03-08 06:23:48,217] [Preprocessor.java:241] [main] Processing chromosome C19336 Processing chromosome C19336 INFO [2014-03-08 06:23:48,260] [Preprocessor.java:241] [main] Processing chromosome C19340 Processing chromosome C19340 INFO [2014-03-08 06:23:48,338] [Preprocessor.java:241] [main] Processing chromosome C19344 Processing chromosome C19344 INFO [2014-03-08 06:23:48,368] [Preprocessor.java:241] [main] Processing chromosome C19348 Processing chromosome C19348 INFO [2014-03-08 06:23:48,437] [Preprocessor.java:241] [main] Processing chromosome C19356 Processing chromosome C19356 INFO [2014-03-08 06:23:48,503] [Preprocessor.java:241] [main] Processing chromosome C19382 Processing chromosome C19382 INFO [2014-03-08 06:23:48,567] [Preprocessor.java:241] [main] Processing chromosome C19386 Processing chromosome C19386 INFO [2014-03-08 06:23:48,617] [Preprocessor.java:241] [main] Processing chromosome C19392 Processing chromosome C19392 INFO [2014-03-08 06:23:48,671] [Preprocessor.java:241] [main] Processing chromosome C19396 Processing chromosome C19396 INFO [2014-03-08 06:23:48,713] [Preprocessor.java:241] [main] Processing chromosome C19410 Processing chromosome C19410 INFO [2014-03-08 06:23:48,746] [Preprocessor.java:241] [main] Processing chromosome C19416 Processing chromosome C19416 INFO [2014-03-08 06:23:48,805] [Preprocessor.java:241] [main] Processing chromosome C19450 Processing chromosome C19450 INFO [2014-03-08 06:23:48,812] [Preprocessor.java:241] [main] Processing chromosome C19460 Processing chromosome C19460 INFO [2014-03-08 06:23:48,839] [Preprocessor.java:241] [main] Processing chromosome C19472 Processing chromosome C19472 INFO [2014-03-08 06:23:48,899] [Preprocessor.java:241] [main] Processing chromosome C19480 Processing chromosome C19480 INFO [2014-03-08 06:23:48,936] [Preprocessor.java:241] [main] Processing chromosome C19494 Processing chromosome C19494 INFO [2014-03-08 06:23:49,008] [Preprocessor.java:241] [main] Processing chromosome C19496 Processing chromosome C19496 INFO [2014-03-08 06:23:49,050] [Preprocessor.java:241] [main] Processing chromosome C19500 Processing chromosome C19500 INFO [2014-03-08 06:23:49,076] [Preprocessor.java:241] [main] Processing chromosome C19510 Processing chromosome C19510 INFO [2014-03-08 06:23:49,140] [Preprocessor.java:241] [main] Processing chromosome C19516 Processing chromosome C19516 INFO [2014-03-08 06:23:49,175] [Preprocessor.java:241] [main] Processing chromosome C19522 Processing chromosome C19522 INFO [2014-03-08 06:23:49,198] [Preprocessor.java:241] [main] Processing chromosome C19532 Processing chromosome C19532 INFO [2014-03-08 06:23:49,264] [Preprocessor.java:241] [main] Processing chromosome C19556 Processing chromosome C19556 INFO [2014-03-08 06:23:49,302] [Preprocessor.java:241] [main] Processing chromosome C19560 Processing chromosome C19560 INFO [2014-03-08 06:23:49,309] [Preprocessor.java:241] [main] Processing chromosome C19570 Processing chromosome C19570 INFO [2014-03-08 06:23:49,362] [Preprocessor.java:241] [main] Processing chromosome C19572 Processing chromosome C19572 INFO [2014-03-08 06:23:49,421] [Preprocessor.java:241] [main] Processing chromosome C19576 Processing chromosome C19576 INFO [2014-03-08 06:23:49,439] [Preprocessor.java:241] [main] Processing chromosome C19582 Processing chromosome C19582 INFO [2014-03-08 06:23:49,506] [Preprocessor.java:241] [main] Processing chromosome C19584 Processing chromosome C19584 INFO [2014-03-08 06:23:49,523] [Preprocessor.java:241] [main] Processing chromosome C19586 Processing chromosome C19586 INFO [2014-03-08 06:23:49,567] [Preprocessor.java:241] [main] Processing chromosome C19594 Processing chromosome C19594 INFO [2014-03-08 06:23:49,584] [Preprocessor.java:241] [main] Processing chromosome C19600 Processing chromosome C19600 INFO [2014-03-08 06:23:49,603] [Preprocessor.java:241] [main] Processing chromosome C19602 Processing chromosome C19602 INFO [2014-03-08 06:23:49,642] [Preprocessor.java:241] [main] Processing chromosome C19612 Processing chromosome C19612 INFO [2014-03-08 06:23:49,699] [Preprocessor.java:241] [main] Processing chromosome C19622 Processing chromosome C19622 INFO [2014-03-08 06:23:49,750] [Preprocessor.java:241] [main] Processing chromosome C19626 Processing chromosome C19626 INFO [2014-03-08 06:23:49,786] [Preprocessor.java:241] [main] Processing chromosome C19628 Processing chromosome C19628 INFO [2014-03-08 06:23:49,792] [Preprocessor.java:241] [main] Processing chromosome C19630 Processing chromosome C19630 INFO [2014-03-08 06:23:49,850] [Preprocessor.java:241] [main] Processing chromosome C19636 Processing chromosome C19636 INFO [2014-03-08 06:23:49,887] [Preprocessor.java:241] [main] Processing chromosome C19642 Processing chromosome C19642 INFO [2014-03-08 06:23:49,953] [Preprocessor.java:241] [main] Processing chromosome C19648 Processing chromosome C19648 INFO [2014-03-08 06:23:50,007] [Preprocessor.java:241] [main] Processing chromosome C19658 Processing chromosome C19658 INFO [2014-03-08 06:23:50,066] [Preprocessor.java:241] [main] Processing chromosome C19660 Processing chromosome C19660 INFO [2014-03-08 06:23:50,126] [Preprocessor.java:241] [main] Processing chromosome C19672 Processing chromosome C19672 INFO [2014-03-08 06:23:50,159] [Preprocessor.java:241] [main] Processing chromosome C19680 Processing chromosome C19680 INFO [2014-03-08 06:23:50,223] [Preprocessor.java:241] [main] Processing chromosome C19682 Processing chromosome C19682 INFO [2014-03-08 06:23:50,282] [Preprocessor.java:241] [main] Processing chromosome C19686 Processing chromosome C19686 INFO [2014-03-08 06:23:50,312] [Preprocessor.java:241] [main] Processing chromosome C19688 Processing chromosome C19688 INFO [2014-03-08 06:23:50,320] [Preprocessor.java:241] [main] Processing chromosome C19702 Processing chromosome C19702 INFO [2014-03-08 06:23:50,340] [Preprocessor.java:241] [main] Processing chromosome C19708 Processing chromosome C19708 INFO [2014-03-08 06:23:50,356] [Preprocessor.java:241] [main] Processing chromosome C19718 Processing chromosome C19718 INFO [2014-03-08 06:23:50,404] [Preprocessor.java:241] [main] Processing chromosome C19722 Processing chromosome C19722 INFO [2014-03-08 06:23:50,455] [Preprocessor.java:241] [main] Processing chromosome C19750 Processing chromosome C19750 INFO [2014-03-08 06:23:50,540] [Preprocessor.java:241] [main] Processing chromosome C19764 Processing chromosome C19764 INFO [2014-03-08 06:23:50,579] [Preprocessor.java:241] [main] Processing chromosome C19768 Processing chromosome C19768 INFO [2014-03-08 06:23:50,589] [Preprocessor.java:241] [main] Processing chromosome C19770 Processing chromosome C19770 INFO [2014-03-08 06:23:50,668] [Preprocessor.java:241] [main] Processing chromosome C19774 Processing chromosome C19774 INFO [2014-03-08 06:23:50,679] [Preprocessor.java:241] [main] Processing chromosome C19776 Processing chromosome C19776 INFO [2014-03-08 06:23:50,710] [Preprocessor.java:241] [main] Processing chromosome C19780 Processing chromosome C19780 INFO [2014-03-08 06:23:50,758] [Preprocessor.java:241] [main] Processing chromosome C19782 Processing chromosome C19782 INFO [2014-03-08 06:23:50,788] [Preprocessor.java:241] [main] Processing chromosome C19784 Processing chromosome C19784 INFO [2014-03-08 06:23:50,839] [Preprocessor.java:241] [main] Processing chromosome C19786 Processing chromosome C19786 INFO [2014-03-08 06:23:50,851] [Preprocessor.java:241] [main] Processing chromosome C19812 Processing chromosome C19812 INFO [2014-03-08 06:23:50,887] [Preprocessor.java:241] [main] Processing chromosome C19814 Processing chromosome C19814 INFO [2014-03-08 06:23:50,896] [Preprocessor.java:241] [main] Processing chromosome C19822 Processing chromosome C19822 INFO [2014-03-08 06:23:50,918] [Preprocessor.java:241] [main] Processing chromosome C19824 Processing chromosome C19824 INFO [2014-03-08 06:23:50,963] [Preprocessor.java:241] [main] Processing chromosome C19830 Processing chromosome C19830 INFO [2014-03-08 06:23:51,015] [Preprocessor.java:241] [main] Processing chromosome C19838 Processing chromosome C19838 INFO [2014-03-08 06:23:51,039] [Preprocessor.java:241] [main] Processing chromosome C19842 Processing chromosome C19842 INFO [2014-03-08 06:23:51,120] [Preprocessor.java:241] [main] Processing chromosome C19850 Processing chromosome C19850 INFO [2014-03-08 06:23:51,134] [Preprocessor.java:241] [main] Processing chromosome C19868 Processing chromosome C19868 INFO [2014-03-08 06:23:51,168] [Preprocessor.java:241] [main] Processing chromosome C19902 Processing chromosome C19902 INFO [2014-03-08 06:23:51,236] [Preprocessor.java:241] [main] Processing chromosome C19914 Processing chromosome C19914 INFO [2014-03-08 06:23:51,245] [Preprocessor.java:241] [main] Processing chromosome C19916 Processing chromosome C19916 INFO [2014-03-08 06:23:51,283] [Preprocessor.java:241] [main] Processing chromosome C19962 Processing chromosome C19962 INFO [2014-03-08 06:23:51,318] [Preprocessor.java:241] [main] Processing chromosome C19966 Processing chromosome C19966 INFO [2014-03-08 06:23:51,334] [Preprocessor.java:241] [main] Processing chromosome C19968 Processing chromosome C19968 INFO [2014-03-08 06:23:51,353] [Preprocessor.java:241] [main] Processing chromosome C19972 Processing chromosome C19972 INFO [2014-03-08 06:23:51,391] [Preprocessor.java:241] [main] Processing chromosome C19974 Processing chromosome C19974 INFO [2014-03-08 06:23:51,416] [Preprocessor.java:241] [main] Processing chromosome C19976 Processing chromosome C19976 INFO [2014-03-08 06:23:51,428] [Preprocessor.java:241] [main] Processing chromosome C19984 Processing chromosome C19984 INFO [2014-03-08 06:23:51,523] [Preprocessor.java:241] [main] Processing chromosome C19990 Processing chromosome C19990 INFO [2014-03-08 06:23:51,631] [Preprocessor.java:241] [main] Processing chromosome C19996 Processing chromosome C19996 INFO [2014-03-08 06:23:51,662] [Preprocessor.java:241] [main] Processing chromosome C20004 Processing chromosome C20004 INFO [2014-03-08 06:23:51,683] [Preprocessor.java:241] [main] Processing chromosome C20010 Processing chromosome C20010 INFO [2014-03-08 06:23:51,692] [Preprocessor.java:241] [main] Processing chromosome C20012 Processing chromosome C20012 INFO [2014-03-08 06:23:51,707] [Preprocessor.java:241] [main] Processing chromosome C20014 Processing chromosome C20014 INFO [2014-03-08 06:23:51,741] [Preprocessor.java:241] [main] Processing chromosome C20018 Processing chromosome C20018 INFO [2014-03-08 06:23:51,809] [Preprocessor.java:241] [main] Processing chromosome C20052 Processing chromosome C20052 INFO [2014-03-08 06:23:51,822] [Preprocessor.java:241] [main] Processing chromosome C20054 Processing chromosome C20054 INFO [2014-03-08 06:23:51,858] [Preprocessor.java:241] [main] Processing chromosome C20056 Processing chromosome C20056 INFO [2014-03-08 06:23:51,935] [Preprocessor.java:241] [main] Processing chromosome C20060 Processing chromosome C20060 INFO [2014-03-08 06:23:51,963] [Preprocessor.java:241] [main] Processing chromosome C20080 Processing chromosome C20080 INFO [2014-03-08 06:23:51,977] [Preprocessor.java:241] [main] Processing chromosome C20084 Processing chromosome C20084 INFO [2014-03-08 06:23:51,992] [Preprocessor.java:241] [main] Processing chromosome C20088 Processing chromosome C20088 INFO [2014-03-08 06:23:52,043] [Preprocessor.java:241] [main] Processing chromosome C20090 Processing chromosome C20090 INFO [2014-03-08 06:23:52,080] [Preprocessor.java:241] [main] Processing chromosome C20094 Processing chromosome C20094 INFO [2014-03-08 06:23:52,108] [Preprocessor.java:241] [main] Processing chromosome C20102 Processing chromosome C20102 INFO [2014-03-08 06:23:52,164] [Preprocessor.java:241] [main] Processing chromosome C20104 Processing chromosome C20104 INFO [2014-03-08 06:23:52,172] [Preprocessor.java:241] [main] Processing chromosome C20108 Processing chromosome C20108 INFO [2014-03-08 06:23:52,205] [Preprocessor.java:241] [main] Processing chromosome C2011 Processing chromosome C2011 INFO [2014-03-08 06:23:52,282] [Preprocessor.java:241] [main] Processing chromosome C20112 Processing chromosome C20112 INFO [2014-03-08 06:23:52,319] [Preprocessor.java:241] [main] Processing chromosome C20116 Processing chromosome C20116 INFO [2014-03-08 06:23:52,334] [Preprocessor.java:241] [main] Processing chromosome C2013 Processing chromosome C2013 INFO [2014-03-08 06:23:52,393] [Preprocessor.java:241] [main] Processing chromosome C20170 Processing chromosome C20170 INFO [2014-03-08 06:23:52,426] [Preprocessor.java:241] [main] Processing chromosome C20174 Processing chromosome C20174 INFO [2014-03-08 06:23:52,447] [Preprocessor.java:241] [main] Processing chromosome C20176 Processing chromosome C20176 INFO [2014-03-08 06:23:52,476] [Preprocessor.java:241] [main] Processing chromosome C20186 Processing chromosome C20186 INFO [2014-03-08 06:23:52,493] [Preprocessor.java:241] [main] Processing chromosome C20188 Processing chromosome C20188 INFO [2014-03-08 06:23:52,550] [Preprocessor.java:241] [main] Processing chromosome C20192 Processing chromosome C20192 INFO [2014-03-08 06:23:52,581] [Preprocessor.java:241] [main] Processing chromosome C20198 Processing chromosome C20198 INFO [2014-03-08 06:23:52,636] [Preprocessor.java:241] [main] Processing chromosome C20210 Processing chromosome C20210 INFO [2014-03-08 06:23:52,654] [Preprocessor.java:241] [main] Processing chromosome C20224 Processing chromosome C20224 INFO [2014-03-08 06:23:52,696] [Preprocessor.java:241] [main] Processing chromosome C20238 Processing chromosome C20238 INFO [2014-03-08 06:23:52,772] [Preprocessor.java:241] [main] Processing chromosome C20244 Processing chromosome C20244 INFO [2014-03-08 06:23:52,831] [Preprocessor.java:241] [main] Processing chromosome C20248 Processing chromosome C20248 INFO [2014-03-08 06:23:52,865] [Preprocessor.java:241] [main] Processing chromosome C20250 Processing chromosome C20250 INFO [2014-03-08 06:23:52,875] [Preprocessor.java:241] [main] Processing chromosome C20252 Processing chromosome C20252 INFO [2014-03-08 06:23:52,902] [Preprocessor.java:241] [main] Processing chromosome C20256 Processing chromosome C20256 INFO [2014-03-08 06:23:52,931] [Preprocessor.java:241] [main] Processing chromosome C20262 Processing chromosome C20262 INFO [2014-03-08 06:23:52,998] [Preprocessor.java:241] [main] Processing chromosome C20282 Processing chromosome C20282 INFO [2014-03-08 06:23:53,074] [Preprocessor.java:241] [main] Processing chromosome C20284 Processing chromosome C20284 INFO [2014-03-08 06:23:53,096] [Preprocessor.java:241] [main] Processing chromosome C20294 Processing chromosome C20294 INFO [2014-03-08 06:23:53,122] [Preprocessor.java:241] [main] Processing chromosome C20298 Processing chromosome C20298 INFO [2014-03-08 06:23:53,159] [Preprocessor.java:241] [main] Processing chromosome C20300 Processing chromosome C20300 INFO [2014-03-08 06:23:53,180] [Preprocessor.java:241] [main] Processing chromosome C20316 Processing chromosome C20316 INFO [2014-03-08 06:23:53,243] [Preprocessor.java:241] [main] Processing chromosome C20318 Processing chromosome C20318 INFO [2014-03-08 06:23:53,259] [Preprocessor.java:241] [main] Processing chromosome C20322 Processing chromosome C20322 INFO [2014-03-08 06:23:53,329] [Preprocessor.java:241] [main] Processing chromosome C20332 Processing chromosome C20332 INFO [2014-03-08 06:23:53,390] [Preprocessor.java:241] [main] Processing chromosome C20334 Processing chromosome C20334 INFO [2014-03-08 06:23:53,421] [Preprocessor.java:241] [main] Processing chromosome C20350 Processing chromosome C20350 INFO [2014-03-08 06:23:53,474] [Preprocessor.java:241] [main] Processing chromosome C20360 Processing chromosome C20360 INFO [2014-03-08 06:23:53,493] [Preprocessor.java:241] [main] Processing chromosome C20364 Processing chromosome C20364 INFO [2014-03-08 06:23:53,554] [Preprocessor.java:241] [main] Processing chromosome C20366 Processing chromosome C20366 INFO [2014-03-08 06:23:53,591] [Preprocessor.java:241] [main] Processing chromosome C20368 Processing chromosome C20368 INFO [2014-03-08 06:23:53,648] [Preprocessor.java:241] [main] Processing chromosome C20374 Processing chromosome C20374 INFO [2014-03-08 06:23:53,665] [Preprocessor.java:241] [main] Processing chromosome C20378 Processing chromosome C20378 INFO [2014-03-08 06:23:53,674] [Preprocessor.java:241] [main] Processing chromosome C20380 Processing chromosome C20380 INFO [2014-03-08 06:23:53,679] [Preprocessor.java:241] [main] Processing chromosome C20390 Processing chromosome C20390 INFO [2014-03-08 06:23:53,737] [Preprocessor.java:241] [main] Processing chromosome C20392 Processing chromosome C20392 INFO [2014-03-08 06:23:53,771] [Preprocessor.java:241] [main] Processing chromosome C20398 Processing chromosome C20398 INFO [2014-03-08 06:23:53,789] [Preprocessor.java:241] [main] Processing chromosome C20400 Processing chromosome C20400 INFO [2014-03-08 06:23:53,845] [Preprocessor.java:241] [main] Processing chromosome C20406 Processing chromosome C20406 INFO [2014-03-08 06:23:53,853] [Preprocessor.java:241] [main] Processing chromosome C2041 Processing chromosome C2041 INFO [2014-03-08 06:23:53,891] [Preprocessor.java:241] [main] Processing chromosome C20410 Processing chromosome C20410 INFO [2014-03-08 06:23:53,925] [Preprocessor.java:241] [main] Processing chromosome C20412 Processing chromosome C20412 INFO [2014-03-08 06:23:53,962] [Preprocessor.java:241] [main] Processing chromosome C20422 Processing chromosome C20422 INFO [2014-03-08 06:23:53,999] [Preprocessor.java:241] [main] Processing chromosome C20426 Processing chromosome C20426 INFO [2014-03-08 06:23:54,059] [Preprocessor.java:241] [main] Processing chromosome C20430 Processing chromosome C20430 INFO [2014-03-08 06:23:54,115] [Preprocessor.java:241] [main] Processing chromosome C20434 Processing chromosome C20434 INFO [2014-03-08 06:23:54,134] [Preprocessor.java:241] [main] Processing chromosome C20446 Processing chromosome C20446 INFO [2014-03-08 06:23:54,189] [Preprocessor.java:241] [main] Processing chromosome C20450 Processing chromosome C20450 INFO [2014-03-08 06:23:54,217] [Preprocessor.java:241] [main] Processing chromosome C20462 Processing chromosome C20462 INFO [2014-03-08 06:23:54,254] [Preprocessor.java:241] [main] Processing chromosome C20470 Processing chromosome C20470 INFO [2014-03-08 06:23:54,298] [Preprocessor.java:241] [main] Processing chromosome C20474 Processing chromosome C20474 INFO [2014-03-08 06:23:54,335] [Preprocessor.java:241] [main] Processing chromosome C20476 Processing chromosome C20476 INFO [2014-03-08 06:23:54,382] [Preprocessor.java:241] [main] Processing chromosome C20478 Processing chromosome C20478 INFO [2014-03-08 06:23:54,389] [Preprocessor.java:241] [main] Processing chromosome C20480 Processing chromosome C20480 INFO [2014-03-08 06:23:54,460] [Preprocessor.java:241] [main] Processing chromosome C20482 Processing chromosome C20482 INFO [2014-03-08 06:23:54,548] [Preprocessor.java:241] [main] Processing chromosome C20484 Processing chromosome C20484 INFO [2014-03-08 06:23:54,599] [Preprocessor.java:241] [main] Processing chromosome C20522 Processing chromosome C20522 INFO [2014-03-08 06:23:54,623] [Preprocessor.java:241] [main] Processing chromosome C20524 Processing chromosome C20524 INFO [2014-03-08 06:23:54,685] [Preprocessor.java:241] [main] Processing chromosome C20532 Processing chromosome C20532 INFO [2014-03-08 06:23:54,708] [Preprocessor.java:241] [main] Processing chromosome C20538 Processing chromosome C20538 INFO [2014-03-08 06:23:54,731] [Preprocessor.java:241] [main] Processing chromosome C20544 Processing chromosome C20544 INFO [2014-03-08 06:23:54,778] [Preprocessor.java:241] [main] Processing chromosome C20546 Processing chromosome C20546 INFO [2014-03-08 06:23:54,798] [Preprocessor.java:241] [main] Processing chromosome C20550 Processing chromosome C20550 INFO [2014-03-08 06:23:54,838] [Preprocessor.java:241] [main] Processing chromosome C20552 Processing chromosome C20552 INFO [2014-03-08 06:23:54,890] [Preprocessor.java:241] [main] Processing chromosome C20574 Processing chromosome C20574 INFO [2014-03-08 06:23:54,901] [Preprocessor.java:241] [main] Processing chromosome C20576 Processing chromosome C20576 INFO [2014-03-08 06:23:54,956] [Preprocessor.java:241] [main] Processing chromosome C20578 Processing chromosome C20578 INFO [2014-03-08 06:23:54,989] [Preprocessor.java:241] [main] Processing chromosome C20582 Processing chromosome C20582 INFO [2014-03-08 06:23:55,045] [Preprocessor.java:241] [main] Processing chromosome C20586 Processing chromosome C20586 INFO [2014-03-08 06:23:55,099] [Preprocessor.java:241] [main] Processing chromosome C20594 Processing chromosome C20594 INFO [2014-03-08 06:23:55,149] [Preprocessor.java:241] [main] Processing chromosome C20610 Processing chromosome C20610 INFO [2014-03-08 06:23:55,172] [Preprocessor.java:241] [main] Processing chromosome C20614 Processing chromosome C20614 INFO [2014-03-08 06:23:55,243] [Preprocessor.java:241] [main] Processing chromosome C20626 Processing chromosome C20626 INFO [2014-03-08 06:23:55,298] [Preprocessor.java:241] [main] Processing chromosome C20630 Processing chromosome C20630 INFO [2014-03-08 06:23:55,317] [Preprocessor.java:241] [main] Processing chromosome C20636 Processing chromosome C20636 INFO [2014-03-08 06:23:55,323] [Preprocessor.java:241] [main] Processing chromosome C20640 Processing chromosome C20640 INFO [2014-03-08 06:23:55,338] [Preprocessor.java:241] [main] Processing chromosome C20642 Processing chromosome C20642 INFO [2014-03-08 06:23:55,363] [Preprocessor.java:241] [main] Processing chromosome C20644 Processing chromosome C20644 INFO [2014-03-08 06:23:55,385] [Preprocessor.java:241] [main] Processing chromosome C20646 Processing chromosome C20646 INFO [2014-03-08 06:23:55,418] [Preprocessor.java:241] [main] Processing chromosome C20652 Processing chromosome C20652 INFO [2014-03-08 06:23:55,436] [Preprocessor.java:241] [main] Processing chromosome C20654 Processing chromosome C20654 INFO [2014-03-08 06:23:55,464] [Preprocessor.java:241] [main] Processing chromosome C20664 Processing chromosome C20664 INFO [2014-03-08 06:23:55,500] [Preprocessor.java:241] [main] Processing chromosome C2067 Processing chromosome C2067 INFO [2014-03-08 06:23:55,564] [Preprocessor.java:241] [main] Processing chromosome C20676 Processing chromosome C20676 INFO [2014-03-08 06:23:55,570] [Preprocessor.java:241] [main] Processing chromosome C20678 Processing chromosome C20678 INFO [2014-03-08 06:23:55,577] [Preprocessor.java:241] [main] Processing chromosome C20680 Processing chromosome C20680 INFO [2014-03-08 06:23:55,600] [Preprocessor.java:241] [main] Processing chromosome C20688 Processing chromosome C20688 INFO [2014-03-08 06:23:55,630] [Preprocessor.java:241] [main] Processing chromosome C20692 Processing chromosome C20692 INFO [2014-03-08 06:23:55,656] [Preprocessor.java:241] [main] Processing chromosome C20694 Processing chromosome C20694 INFO [2014-03-08 06:23:55,679] [Preprocessor.java:241] [main] Processing chromosome C20704 Processing chromosome C20704 INFO [2014-03-08 06:23:55,722] [Preprocessor.java:241] [main] Processing chromosome C2071 Processing chromosome C2071 INFO [2014-03-08 06:23:55,787] [Preprocessor.java:241] [main] Processing chromosome C20716 Processing chromosome C20716 INFO [2014-03-08 06:23:55,806] [Preprocessor.java:241] [main] Processing chromosome C20720 Processing chromosome C20720 INFO [2014-03-08 06:23:55,818] [Preprocessor.java:241] [main] Processing chromosome C20740 Processing chromosome C20740 INFO [2014-03-08 06:23:55,854] [Preprocessor.java:241] [main] Processing chromosome C20754 Processing chromosome C20754 INFO [2014-03-08 06:23:55,898] [Preprocessor.java:241] [main] Processing chromosome C20756 Processing chromosome C20756 INFO [2014-03-08 06:23:55,956] [Preprocessor.java:241] [main] Processing chromosome C20760 Processing chromosome C20760 INFO [2014-03-08 06:23:55,995] [Preprocessor.java:241] [main] Processing chromosome C20764 Processing chromosome C20764 INFO [2014-03-08 06:23:56,024] [Preprocessor.java:241] [main] Processing chromosome C20766 Processing chromosome C20766 INFO [2014-03-08 06:23:56,041] [Preprocessor.java:241] [main] Processing chromosome C20768 Processing chromosome C20768 INFO [2014-03-08 06:23:56,060] [Preprocessor.java:241] [main] Processing chromosome C20774 Processing chromosome C20774 INFO [2014-03-08 06:23:56,077] [Preprocessor.java:241] [main] Processing chromosome C20782 Processing chromosome C20782 INFO [2014-03-08 06:23:56,110] [Preprocessor.java:241] [main] Processing chromosome C20790 Processing chromosome C20790 INFO [2014-03-08 06:23:56,205] [Preprocessor.java:241] [main] Processing chromosome C20808 Processing chromosome C20808 INFO [2014-03-08 06:23:56,212] [Preprocessor.java:241] [main] Processing chromosome C20828 Processing chromosome C20828 INFO [2014-03-08 06:23:56,228] [Preprocessor.java:241] [main] Processing chromosome C20848 Processing chromosome C20848 INFO [2014-03-08 06:23:56,264] [Preprocessor.java:241] [main] Processing chromosome C20858 Processing chromosome C20858 INFO [2014-03-08 06:23:56,319] [Preprocessor.java:241] [main] Processing chromosome C2087 Processing chromosome C2087 INFO [2014-03-08 06:23:56,368] [Preprocessor.java:241] [main] Processing chromosome C20870 Processing chromosome C20870 INFO [2014-03-08 06:23:56,428] [Preprocessor.java:241] [main] Processing chromosome C20874 Processing chromosome C20874 INFO [2014-03-08 06:23:56,465] [Preprocessor.java:241] [main] Processing chromosome C20884 Processing chromosome C20884 INFO [2014-03-08 06:23:56,531] [Preprocessor.java:241] [main] Processing chromosome C20888 Processing chromosome C20888 INFO [2014-03-08 06:23:56,575] [Preprocessor.java:241] [main] Processing chromosome C2089 Processing chromosome C2089 INFO [2014-03-08 06:23:56,616] [Preprocessor.java:241] [main] Processing chromosome C20900 Processing chromosome C20900 INFO [2014-03-08 06:23:56,678] [Preprocessor.java:241] [main] Processing chromosome C20906 Processing chromosome C20906 INFO [2014-03-08 06:23:56,725] [Preprocessor.java:241] [main] Processing chromosome C20916 Processing chromosome C20916 INFO [2014-03-08 06:23:56,772] [Preprocessor.java:241] [main] Processing chromosome C20920 Processing chromosome C20920 INFO [2014-03-08 06:23:56,787] [Preprocessor.java:241] [main] Processing chromosome C20928 Processing chromosome C20928 INFO [2014-03-08 06:23:56,802] [Preprocessor.java:241] [main] Processing chromosome C20942 Processing chromosome C20942 INFO [2014-03-08 06:23:56,843] [Preprocessor.java:241] [main] Processing chromosome C20946 Processing chromosome C20946 INFO [2014-03-08 06:23:56,886] [Preprocessor.java:241] [main] Processing chromosome C20948 Processing chromosome C20948 INFO [2014-03-08 06:23:56,909] [Preprocessor.java:241] [main] Processing chromosome C20986 Processing chromosome C20986 INFO [2014-03-08 06:23:56,946] [Preprocessor.java:241] [main] Processing chromosome C21000 Processing chromosome C21000 INFO [2014-03-08 06:23:57,004] [Preprocessor.java:241] [main] Processing chromosome C21008 Processing chromosome C21008 INFO [2014-03-08 06:23:57,054] [Preprocessor.java:241] [main] Processing chromosome C21012 Processing chromosome C21012 INFO [2014-03-08 06:23:57,099] [Preprocessor.java:241] [main] Processing chromosome C21018 Processing chromosome C21018 INFO [2014-03-08 06:23:57,133] [Preprocessor.java:241] [main] Processing chromosome C21032 Processing chromosome C21032 INFO [2014-03-08 06:23:57,162] [Preprocessor.java:241] [main] Processing chromosome C21036 Processing chromosome C21036 INFO [2014-03-08 06:23:57,211] [Preprocessor.java:241] [main] Processing chromosome C21038 Processing chromosome C21038 INFO [2014-03-08 06:23:57,262] [Preprocessor.java:241] [main] Processing chromosome C21046 Processing chromosome C21046 INFO [2014-03-08 06:23:57,295] [Preprocessor.java:241] [main] Processing chromosome C21050 Processing chromosome C21050 INFO [2014-03-08 06:23:57,310] [Preprocessor.java:241] [main] Processing chromosome C21060 Processing chromosome C21060 INFO [2014-03-08 06:23:57,365] [Preprocessor.java:241] [main] Processing chromosome C21062 Processing chromosome C21062 INFO [2014-03-08 06:23:57,379] [Preprocessor.java:241] [main] Processing chromosome C21064 Processing chromosome C21064 INFO [2014-03-08 06:23:57,411] [Preprocessor.java:241] [main] Processing chromosome C21072 Processing chromosome C21072 INFO [2014-03-08 06:23:57,441] [Preprocessor.java:241] [main] Processing chromosome C21094 Processing chromosome C21094 INFO [2014-03-08 06:23:57,517] [Preprocessor.java:241] [main] Processing chromosome C21096 Processing chromosome C21096 INFO [2014-03-08 06:23:57,537] [Preprocessor.java:241] [main] Processing chromosome C21102 Processing chromosome C21102 INFO [2014-03-08 06:23:57,565] [Preprocessor.java:241] [main] Processing chromosome C21104 Processing chromosome C21104 INFO [2014-03-08 06:23:57,570] [Preprocessor.java:241] [main] Processing chromosome C21108 Processing chromosome C21108 INFO [2014-03-08 06:23:57,632] [Preprocessor.java:241] [main] Processing chromosome C21120 Processing chromosome C21120 INFO [2014-03-08 06:23:57,656] [Preprocessor.java:241] [main] Processing chromosome C21122 Processing chromosome C21122 INFO [2014-03-08 06:23:57,682] [Preprocessor.java:241] [main] Processing chromosome C21128 Processing chromosome C21128 INFO [2014-03-08 06:23:57,742] [Preprocessor.java:241] [main] Processing chromosome C21130 Processing chromosome C21130 INFO [2014-03-08 06:23:57,761] [Preprocessor.java:241] [main] Processing chromosome C21134 Processing chromosome C21134 INFO [2014-03-08 06:23:57,766] [Preprocessor.java:241] [main] Processing chromosome C21144 Processing chromosome C21144 INFO [2014-03-08 06:23:57,796] [Preprocessor.java:241] [main] Processing chromosome C21154 Processing chromosome C21154 INFO [2014-03-08 06:23:57,812] [Preprocessor.java:241] [main] Processing chromosome C21156 Processing chromosome C21156 INFO [2014-03-08 06:23:57,861] [Preprocessor.java:241] [main] Processing chromosome C21160 Processing chromosome C21160 INFO [2014-03-08 06:23:57,904] [Preprocessor.java:241] [main] Processing chromosome C21170 Processing chromosome C21170 INFO [2014-03-08 06:23:57,952] [Preprocessor.java:241] [main] Processing chromosome C21176 Processing chromosome C21176 INFO [2014-03-08 06:23:58,022] [Preprocessor.java:241] [main] Processing chromosome C21178 Processing chromosome C21178 INFO [2014-03-08 06:23:58,066] [Preprocessor.java:241] [main] Processing chromosome C21186 Processing chromosome C21186 INFO [2014-03-08 06:23:58,074] [Preprocessor.java:241] [main] Processing chromosome C21188 Processing chromosome C21188 INFO [2014-03-08 06:23:58,131] [Preprocessor.java:241] [main] Processing chromosome C21194 Processing chromosome C21194 INFO [2014-03-08 06:23:58,137] [Preprocessor.java:241] [main] Processing chromosome C21218 Processing chromosome C21218 INFO [2014-03-08 06:23:58,154] [Preprocessor.java:241] [main] Processing chromosome C21226 Processing chromosome C21226 INFO [2014-03-08 06:23:58,189] [Preprocessor.java:241] [main] Processing chromosome C21236 Processing chromosome C21236 INFO [2014-03-08 06:23:58,214] [Preprocessor.java:241] [main] Processing chromosome C21238 Processing chromosome C21238 INFO [2014-03-08 06:23:58,233] [Preprocessor.java:241] [main] Processing chromosome C21256 Processing chromosome C21256 INFO [2014-03-08 06:23:58,269] [Preprocessor.java:241] [main] Processing chromosome C21260 Processing chromosome C21260 INFO [2014-03-08 06:23:58,323] [Preprocessor.java:241] [main] Processing chromosome C21278 Processing chromosome C21278 INFO [2014-03-08 06:23:58,345] [Preprocessor.java:241] [main] Processing chromosome C21282 Processing chromosome C21282 INFO [2014-03-08 06:23:58,361] [Preprocessor.java:241] [main] Processing chromosome C21286 Processing chromosome C21286 INFO [2014-03-08 06:23:58,449] [Preprocessor.java:241] [main] Processing chromosome C21292 Processing chromosome C21292 INFO [2014-03-08 06:23:58,452] [Preprocessor.java:241] [main] Processing chromosome C21298 Processing chromosome C21298 INFO [2014-03-08 06:23:58,500] [Preprocessor.java:241] [main] Processing chromosome C21304 Processing chromosome C21304 INFO [2014-03-08 06:23:58,519] [Preprocessor.java:241] [main] Processing chromosome C21306 Processing chromosome C21306 INFO [2014-03-08 06:23:58,534] [Preprocessor.java:241] [main] Processing chromosome C21308 Processing chromosome C21308 INFO [2014-03-08 06:23:58,571] [Preprocessor.java:241] [main] Processing chromosome C21310 Processing chromosome C21310 INFO [2014-03-08 06:23:58,594] [Preprocessor.java:241] [main] Processing chromosome C21312 Processing chromosome C21312 INFO [2014-03-08 06:23:58,654] [Preprocessor.java:241] [main] Processing chromosome C21314 Processing chromosome C21314 INFO [2014-03-08 06:23:58,664] [Preprocessor.java:241] [main] Processing chromosome C21324 Processing chromosome C21324 INFO [2014-03-08 06:23:58,679] [Preprocessor.java:241] [main] Processing chromosome C21330 Processing chromosome C21330 INFO [2014-03-08 06:23:58,699] [Preprocessor.java:241] [main] Processing chromosome C21336 Processing chromosome C21336 INFO [2014-03-08 06:23:58,764] [Preprocessor.java:241] [main] Processing chromosome C21346 Processing chromosome C21346 INFO [2014-03-08 06:23:58,804] [Preprocessor.java:241] [main] Processing chromosome C21354 Processing chromosome C21354 INFO [2014-03-08 06:23:58,816] [Preprocessor.java:241] [main] Processing chromosome C21356 Processing chromosome C21356 INFO [2014-03-08 06:23:58,831] [Preprocessor.java:241] [main] Processing chromosome C21372 Processing chromosome C21372 INFO [2014-03-08 06:23:58,850] [Preprocessor.java:241] [main] Processing chromosome C21374 Processing chromosome C21374 INFO [2014-03-08 06:23:58,904] [Preprocessor.java:241] [main] Processing chromosome C21378 Processing chromosome C21378 INFO [2014-03-08 06:23:58,946] [Preprocessor.java:241] [main] Processing chromosome C21380 Processing chromosome C21380 INFO [2014-03-08 06:23:59,007] [Preprocessor.java:241] [main] Processing chromosome C21386 Processing chromosome C21386 INFO [2014-03-08 06:23:59,033] [Preprocessor.java:241] [main] Processing chromosome C21404 Processing chromosome C21404 INFO [2014-03-08 06:23:59,041] [Preprocessor.java:241] [main] Processing chromosome C2141 Processing chromosome C2141 INFO [2014-03-08 06:23:59,128] [Preprocessor.java:241] [main] Processing chromosome C21418 Processing chromosome C21418 INFO [2014-03-08 06:23:59,175] [Preprocessor.java:241] [main] Processing chromosome C21438 Processing chromosome C21438 INFO [2014-03-08 06:23:59,193] [Preprocessor.java:241] [main] Processing chromosome C2145 Processing chromosome C2145 INFO [2014-03-08 06:23:59,266] [Preprocessor.java:241] [main] Processing chromosome C21454 Processing chromosome C21454 INFO [2014-03-08 06:23:59,300] [Preprocessor.java:241] [main] Processing chromosome C21460 Processing chromosome C21460 INFO [2014-03-08 06:23:59,333] [Preprocessor.java:241] [main] Processing chromosome C21474 Processing chromosome C21474 INFO [2014-03-08 06:23:59,400] [Preprocessor.java:241] [main] Processing chromosome C21484 Processing chromosome C21484 INFO [2014-03-08 06:23:59,445] [Preprocessor.java:241] [main] Processing chromosome C21494 Processing chromosome C21494 INFO [2014-03-08 06:23:59,454] [Preprocessor.java:241] [main] Processing chromosome C21500 Processing chromosome C21500 INFO [2014-03-08 06:23:59,495] [Preprocessor.java:241] [main] Processing chromosome C21502 Processing chromosome C21502 INFO [2014-03-08 06:23:59,557] [Preprocessor.java:241] [main] Processing chromosome C21504 Processing chromosome C21504 INFO [2014-03-08 06:23:59,570] [Preprocessor.java:241] [main] Processing chromosome C21508 Processing chromosome C21508 INFO [2014-03-08 06:23:59,595] [Preprocessor.java:241] [main] Processing chromosome C21516 Processing chromosome C21516 INFO [2014-03-08 06:23:59,644] [Preprocessor.java:241] [main] Processing chromosome C21518 Processing chromosome C21518 INFO [2014-03-08 06:23:59,652] [Preprocessor.java:241] [main] Processing chromosome C21544 Processing chromosome C21544 INFO [2014-03-08 06:23:59,661] [Preprocessor.java:241] [main] Processing chromosome C21548 Processing chromosome C21548 INFO [2014-03-08 06:23:59,708] [Preprocessor.java:241] [main] Processing chromosome C21550 Processing chromosome C21550 INFO [2014-03-08 06:23:59,763] [Preprocessor.java:241] [main] Processing chromosome C21554 Processing chromosome C21554 INFO [2014-03-08 06:23:59,817] [Preprocessor.java:241] [main] Processing chromosome C21560 Processing chromosome C21560 INFO [2014-03-08 06:23:59,827] [Preprocessor.java:241] [main] Processing chromosome C21564 Processing chromosome C21564 INFO [2014-03-08 06:23:59,832] [Preprocessor.java:241] [main] Processing chromosome C21566 Processing chromosome C21566 INFO [2014-03-08 06:23:59,857] [Preprocessor.java:241] [main] Processing chromosome C21572 Processing chromosome C21572 INFO [2014-03-08 06:23:59,928] [Preprocessor.java:241] [main] Processing chromosome C21578 Processing chromosome C21578 INFO [2014-03-08 06:23:59,941] [Preprocessor.java:241] [main] Processing chromosome C21582 Processing chromosome C21582 INFO [2014-03-08 06:23:59,950] [Preprocessor.java:241] [main] Processing chromosome C21586 Processing chromosome C21586 INFO [2014-03-08 06:23:59,975] [Preprocessor.java:241] [main] Processing chromosome C21588 Processing chromosome C21588 INFO [2014-03-08 06:24:00,032] [Preprocessor.java:241] [main] Processing chromosome C21590 Processing chromosome C21590 INFO [2014-03-08 06:24:00,098] [Preprocessor.java:241] [main] Processing chromosome C21596 Processing chromosome C21596 INFO [2014-03-08 06:24:00,130] [Preprocessor.java:241] [main] Processing chromosome C21610 Processing chromosome C21610 INFO [2014-03-08 06:24:00,156] [Preprocessor.java:241] [main] Processing chromosome C21614 Processing chromosome C21614 INFO [2014-03-08 06:24:00,189] [Preprocessor.java:241] [main] Processing chromosome C21616 Processing chromosome C21616 INFO [2014-03-08 06:24:00,219] [Preprocessor.java:241] [main] Processing chromosome C21622 Processing chromosome C21622 INFO [2014-03-08 06:24:00,259] [Preprocessor.java:241] [main] Processing chromosome C21624 Processing chromosome C21624 INFO [2014-03-08 06:24:00,284] [Preprocessor.java:241] [main] Processing chromosome C21634 Processing chromosome C21634 INFO [2014-03-08 06:24:00,301] [Preprocessor.java:241] [main] Processing chromosome C21636 Processing chromosome C21636 INFO [2014-03-08 06:24:00,329] [Preprocessor.java:241] [main] Processing chromosome C21638 Processing chromosome C21638 INFO [2014-03-08 06:24:00,342] [Preprocessor.java:241] [main] Processing chromosome C21650 Processing chromosome C21650 INFO [2014-03-08 06:24:00,360] [Preprocessor.java:241] [main] Processing chromosome C21652 Processing chromosome C21652 INFO [2014-03-08 06:24:00,397] [Preprocessor.java:241] [main] Processing chromosome C21654 Processing chromosome C21654 INFO [2014-03-08 06:24:00,470] [Preprocessor.java:241] [main] Processing chromosome C21670 Processing chromosome C21670 INFO [2014-03-08 06:24:00,476] [Preprocessor.java:241] [main] Processing chromosome C21684 Processing chromosome C21684 INFO [2014-03-08 06:24:00,498] [Preprocessor.java:241] [main] Processing chromosome C21694 Processing chromosome C21694 INFO [2014-03-08 06:24:00,534] [Preprocessor.java:241] [main] Processing chromosome C21696 Processing chromosome C21696 INFO [2014-03-08 06:24:00,575] [Preprocessor.java:241] [main] Processing chromosome C21702 Processing chromosome C21702 INFO [2014-03-08 06:24:00,630] [Preprocessor.java:241] [main] Processing chromosome C21710 Processing chromosome C21710 INFO [2014-03-08 06:24:00,655] [Preprocessor.java:241] [main] Processing chromosome C21716 Processing chromosome C21716 INFO [2014-03-08 06:24:00,685] [Preprocessor.java:241] [main] Processing chromosome C21720 Processing chromosome C21720 INFO [2014-03-08 06:24:00,719] [Preprocessor.java:241] [main] Processing chromosome C21722 Processing chromosome C21722 INFO [2014-03-08 06:24:00,781] [Preprocessor.java:241] [main] Processing chromosome C21724 Processing chromosome C21724 INFO [2014-03-08 06:24:00,803] [Preprocessor.java:241] [main] Processing chromosome C21728 Processing chromosome C21728 INFO [2014-03-08 06:24:00,829] [Preprocessor.java:241] [main] Processing chromosome C21730 Processing chromosome C21730 INFO [2014-03-08 06:24:00,866] [Preprocessor.java:241] [main] Processing chromosome C21750 Processing chromosome C21750 INFO [2014-03-08 06:24:00,877] [Preprocessor.java:241] [main] Processing chromosome C21764 Processing chromosome C21764 INFO [2014-03-08 06:24:00,923] [Preprocessor.java:241] [main] Processing chromosome C21766 Processing chromosome C21766 INFO [2014-03-08 06:24:00,936] [Preprocessor.java:241] [main] Processing chromosome C21780 Processing chromosome C21780 INFO [2014-03-08 06:24:00,949] [Preprocessor.java:241] [main] Processing chromosome C21782 Processing chromosome C21782 INFO [2014-03-08 06:24:00,956] [Preprocessor.java:241] [main] Processing chromosome C21784 Processing chromosome C21784 INFO [2014-03-08 06:24:00,972] [Preprocessor.java:241] [main] Processing chromosome C21790 Processing chromosome C21790 INFO [2014-03-08 06:24:00,989] [Preprocessor.java:241] [main] Processing chromosome C21792 Processing chromosome C21792 INFO [2014-03-08 06:24:01,018] [Preprocessor.java:241] [main] Processing chromosome C21796 Processing chromosome C21796 INFO [2014-03-08 06:24:01,071] [Preprocessor.java:241] [main] Processing chromosome C21802 Processing chromosome C21802 INFO [2014-03-08 06:24:01,107] [Preprocessor.java:241] [main] Processing chromosome C21804 Processing chromosome C21804 INFO [2014-03-08 06:24:01,114] [Preprocessor.java:241] [main] Processing chromosome C21812 Processing chromosome C21812 INFO [2014-03-08 06:24:01,121] [Preprocessor.java:241] [main] Processing chromosome C21820 Processing chromosome C21820 INFO [2014-03-08 06:24:01,136] [Preprocessor.java:241] [main] Processing chromosome C21834 Processing chromosome C21834 INFO [2014-03-08 06:24:01,157] [Preprocessor.java:241] [main] Processing chromosome C21840 Processing chromosome C21840 INFO [2014-03-08 06:24:01,161] [Preprocessor.java:241] [main] Processing chromosome C21848 Processing chromosome C21848 INFO [2014-03-08 06:24:01,168] [Preprocessor.java:241] [main] Processing chromosome C21852 Processing chromosome C21852 INFO [2014-03-08 06:24:01,188] [Preprocessor.java:241] [main] Processing chromosome C21854 Processing chromosome C21854 INFO [2014-03-08 06:24:01,231] [Preprocessor.java:241] [main] Processing chromosome C21858 Processing chromosome C21858 INFO [2014-03-08 06:24:01,240] [Preprocessor.java:241] [main] Processing chromosome C21862 Processing chromosome C21862 INFO [2014-03-08 06:24:01,278] [Preprocessor.java:241] [main] Processing chromosome C21868 Processing chromosome C21868 INFO [2014-03-08 06:24:01,287] [Preprocessor.java:241] [main] Processing chromosome C21870 Processing chromosome C21870 INFO [2014-03-08 06:24:01,296] [Preprocessor.java:241] [main] Processing chromosome C21884 Processing chromosome C21884 INFO [2014-03-08 06:24:01,314] [Preprocessor.java:241] [main] Processing chromosome C21892 Processing chromosome C21892 INFO [2014-03-08 06:24:01,364] [Preprocessor.java:241] [main] Processing chromosome C21896 Processing chromosome C21896 INFO [2014-03-08 06:24:01,371] [Preprocessor.java:241] [main] Processing chromosome C21924 Processing chromosome C21924 INFO [2014-03-08 06:24:01,440] [Preprocessor.java:241] [main] Processing chromosome C21942 Processing chromosome C21942 INFO [2014-03-08 06:24:01,468] [Preprocessor.java:241] [main] Processing chromosome C21944 Processing chromosome C21944 INFO [2014-03-08 06:24:01,517] [Preprocessor.java:241] [main] Processing chromosome C21956 Processing chromosome C21956 INFO [2014-03-08 06:24:01,530] [Preprocessor.java:241] [main] Processing chromosome C21994 Processing chromosome C21994 INFO [2014-03-08 06:24:01,563] [Preprocessor.java:241] [main] Processing chromosome C22000 Processing chromosome C22000 INFO [2014-03-08 06:24:01,585] [Preprocessor.java:241] [main] Processing chromosome C2201 Processing chromosome C2201 INFO [2014-03-08 06:24:01,648] [Preprocessor.java:241] [main] Processing chromosome C22010 Processing chromosome C22010 INFO [2014-03-08 06:24:01,662] [Preprocessor.java:241] [main] Processing chromosome C22012 Processing chromosome C22012 INFO [2014-03-08 06:24:01,687] [Preprocessor.java:241] [main] Processing chromosome C22018 Processing chromosome C22018 INFO [2014-03-08 06:24:01,711] [Preprocessor.java:241] [main] Processing chromosome C22020 Processing chromosome C22020 INFO [2014-03-08 06:24:01,742] [Preprocessor.java:241] [main] Processing chromosome C22028 Processing chromosome C22028 INFO [2014-03-08 06:24:01,746] [Preprocessor.java:241] [main] Processing chromosome C22032 Processing chromosome C22032 INFO [2014-03-08 06:24:01,757] [Preprocessor.java:241] [main] Processing chromosome C22036 Processing chromosome C22036 INFO [2014-03-08 06:24:01,792] [Preprocessor.java:241] [main] Processing chromosome C22046 Processing chromosome C22046 INFO [2014-03-08 06:24:01,817] [Preprocessor.java:241] [main] Processing chromosome C22048 Processing chromosome C22048 INFO [2014-03-08 06:24:01,825] [Preprocessor.java:241] [main] Processing chromosome C22056 Processing chromosome C22056 INFO [2014-03-08 06:24:01,832] [Preprocessor.java:241] [main] Processing chromosome C22058 Processing chromosome C22058 INFO [2014-03-08 06:24:01,872] [Preprocessor.java:241] [main] Processing chromosome C22060 Processing chromosome C22060 INFO [2014-03-08 06:24:01,937] [Preprocessor.java:241] [main] Processing chromosome C22074 Processing chromosome C22074 INFO [2014-03-08 06:24:01,975] [Preprocessor.java:241] [main] Processing chromosome C22084 Processing chromosome C22084 INFO [2014-03-08 06:24:01,997] [Preprocessor.java:241] [main] Processing chromosome C22092 Processing chromosome C22092 INFO [2014-03-08 06:24:02,015] [Preprocessor.java:241] [main] Processing chromosome C22094 Processing chromosome C22094 INFO [2014-03-08 06:24:02,027] [Preprocessor.java:241] [main] Processing chromosome C22096 Processing chromosome C22096 INFO [2014-03-08 06:24:02,052] [Preprocessor.java:241] [main] Processing chromosome C22100 Processing chromosome C22100 INFO [2014-03-08 06:24:02,078] [Preprocessor.java:241] [main] Processing chromosome C22106 Processing chromosome C22106 INFO [2014-03-08 06:24:02,096] [Preprocessor.java:241] [main] Processing chromosome C22110 Processing chromosome C22110 INFO [2014-03-08 06:24:02,125] [Preprocessor.java:241] [main] Processing chromosome C22112 Processing chromosome C22112 INFO [2014-03-08 06:24:02,198] [Preprocessor.java:241] [main] Processing chromosome C22114 Processing chromosome C22114 INFO [2014-03-08 06:24:02,245] [Preprocessor.java:241] [main] Processing chromosome C22118 Processing chromosome C22118 INFO [2014-03-08 06:24:02,268] [Preprocessor.java:241] [main] Processing chromosome C22120 Processing chromosome C22120 INFO [2014-03-08 06:24:02,290] [Preprocessor.java:241] [main] Processing chromosome C22124 Processing chromosome C22124 INFO [2014-03-08 06:24:02,294] [Preprocessor.java:241] [main] Processing chromosome C22130 Processing chromosome C22130 INFO [2014-03-08 06:24:02,310] [Preprocessor.java:241] [main] Processing chromosome C22136 Processing chromosome C22136 INFO [2014-03-08 06:24:02,338] [Preprocessor.java:241] [main] Processing chromosome C22138 Processing chromosome C22138 INFO [2014-03-08 06:24:02,363] [Preprocessor.java:241] [main] Processing chromosome C22140 Processing chromosome C22140 INFO [2014-03-08 06:24:02,394] [Preprocessor.java:241] [main] Processing chromosome C22142 Processing chromosome C22142 INFO [2014-03-08 06:24:02,479] [Preprocessor.java:241] [main] Processing chromosome C22146 Processing chromosome C22146 INFO [2014-03-08 06:24:02,501] [Preprocessor.java:241] [main] Processing chromosome C22148 Processing chromosome C22148 INFO [2014-03-08 06:24:02,518] [Preprocessor.java:241] [main] Processing chromosome C22164 Processing chromosome C22164 INFO [2014-03-08 06:24:02,565] [Preprocessor.java:241] [main] Processing chromosome C22168 Processing chromosome C22168 INFO [2014-03-08 06:24:02,588] [Preprocessor.java:241] [main] Processing chromosome C22174 Processing chromosome C22174 INFO [2014-03-08 06:24:02,626] [Preprocessor.java:241] [main] Processing chromosome C22192 Processing chromosome C22192 INFO [2014-03-08 06:24:02,684] [Preprocessor.java:241] [main] Processing chromosome C22194 Processing chromosome C22194 INFO [2014-03-08 06:24:02,707] [Preprocessor.java:241] [main] Processing chromosome C22198 Processing chromosome C22198 INFO [2014-03-08 06:24:02,719] [Preprocessor.java:241] [main] Processing chromosome C22202 Processing chromosome C22202 INFO [2014-03-08 06:24:02,751] [Preprocessor.java:241] [main] Processing chromosome C22208 Processing chromosome C22208 INFO [2014-03-08 06:24:02,775] [Preprocessor.java:241] [main] Processing chromosome C22216 Processing chromosome C22216 INFO [2014-03-08 06:24:02,786] [Preprocessor.java:241] [main] Processing chromosome C22220 Processing chromosome C22220 INFO [2014-03-08 06:24:02,813] [Preprocessor.java:241] [main] Processing chromosome C22232 Processing chromosome C22232 INFO [2014-03-08 06:24:02,854] [Preprocessor.java:241] [main] Processing chromosome C22242 Processing chromosome C22242 INFO [2014-03-08 06:24:02,894] [Preprocessor.java:241] [main] Processing chromosome C22248 Processing chromosome C22248 INFO [2014-03-08 06:24:02,959] [Preprocessor.java:241] [main] Processing chromosome C22264 Processing chromosome C22264 INFO [2014-03-08 06:24:02,999] [Preprocessor.java:241] [main] Processing chromosome C22268 Processing chromosome C22268 INFO [2014-03-08 06:24:03,054] [Preprocessor.java:241] [main] Processing chromosome C22274 Processing chromosome C22274 INFO [2014-03-08 06:24:03,115] [Preprocessor.java:241] [main] Processing chromosome C22276 Processing chromosome C22276 INFO [2014-03-08 06:24:03,138] [Preprocessor.java:241] [main] Processing chromosome C22280 Processing chromosome C22280 INFO [2014-03-08 06:24:03,201] [Preprocessor.java:241] [main] Processing chromosome C22284 Processing chromosome C22284 INFO [2014-03-08 06:24:03,216] [Preprocessor.java:241] [main] Processing chromosome C22290 Processing chromosome C22290 INFO [2014-03-08 06:24:03,257] [Preprocessor.java:241] [main] Processing chromosome C22294 Processing chromosome C22294 INFO [2014-03-08 06:24:03,308] [Preprocessor.java:241] [main] Processing chromosome C22298 Processing chromosome C22298 INFO [2014-03-08 06:24:03,313] [Preprocessor.java:241] [main] Processing chromosome C22302 Processing chromosome C22302 INFO [2014-03-08 06:24:03,335] [Preprocessor.java:241] [main] Processing chromosome C22304 Processing chromosome C22304 INFO [2014-03-08 06:24:03,356] [Preprocessor.java:241] [main] Processing chromosome C22310 Processing chromosome C22310 INFO [2014-03-08 06:24:03,367] [Preprocessor.java:241] [main] Processing chromosome C22322 Processing chromosome C22322 INFO [2014-03-08 06:24:03,376] [Preprocessor.java:241] [main] Processing chromosome C22324 Processing chromosome C22324 INFO [2014-03-08 06:24:03,429] [Preprocessor.java:241] [main] Processing chromosome C22326 Processing chromosome C22326 INFO [2014-03-08 06:24:03,447] [Preprocessor.java:241] [main] Processing chromosome C22330 Processing chromosome C22330 INFO [2014-03-08 06:24:03,451] [Preprocessor.java:241] [main] Processing chromosome C22340 Processing chromosome C22340 INFO [2014-03-08 06:24:03,498] [Preprocessor.java:241] [main] Processing chromosome C22344 Processing chromosome C22344 INFO [2014-03-08 06:24:03,545] [Preprocessor.java:241] [main] Processing chromosome C22346 Processing chromosome C22346 INFO [2014-03-08 06:24:03,564] [Preprocessor.java:241] [main] Processing chromosome C22360 Processing chromosome C22360 INFO [2014-03-08 06:24:03,579] [Preprocessor.java:241] [main] Processing chromosome C22368 Processing chromosome C22368 INFO [2014-03-08 06:24:03,651] [Preprocessor.java:241] [main] Processing chromosome C22382 Processing chromosome C22382 INFO [2014-03-08 06:24:03,669] [Preprocessor.java:241] [main] Processing chromosome C22384 Processing chromosome C22384 INFO [2014-03-08 06:24:03,686] [Preprocessor.java:241] [main] Processing chromosome C22386 Processing chromosome C22386 INFO [2014-03-08 06:24:03,732] [Preprocessor.java:241] [main] Processing chromosome C22388 Processing chromosome C22388 INFO [2014-03-08 06:24:03,776] [Preprocessor.java:241] [main] Processing chromosome C22390 Processing chromosome C22390 INFO [2014-03-08 06:24:03,875] [Preprocessor.java:241] [main] Processing chromosome C22400 Processing chromosome C22400 INFO [2014-03-08 06:24:03,880] [Preprocessor.java:241] [main] Processing chromosome C22406 Processing chromosome C22406 INFO [2014-03-08 06:24:03,960] [Preprocessor.java:241] [main] Processing chromosome C22414 Processing chromosome C22414 INFO [2014-03-08 06:24:03,996] [Preprocessor.java:241] [main] Processing chromosome C22422 Processing chromosome C22422 INFO [2014-03-08 06:24:04,068] [Preprocessor.java:241] [main] Processing chromosome C22424 Processing chromosome C22424 INFO [2014-03-08 06:24:04,097] [Preprocessor.java:241] [main] Processing chromosome C22440 Processing chromosome C22440 INFO [2014-03-08 06:24:04,133] [Preprocessor.java:241] [main] Processing chromosome C22444 Processing chromosome C22444 INFO [2014-03-08 06:24:04,152] [Preprocessor.java:241] [main] Processing chromosome C22452 Processing chromosome C22452 INFO [2014-03-08 06:24:04,182] [Preprocessor.java:241] [main] Processing chromosome C22456 Processing chromosome C22456 INFO [2014-03-08 06:24:04,240] [Preprocessor.java:241] [main] Processing chromosome C22458 Processing chromosome C22458 INFO [2014-03-08 06:24:04,328] [Preprocessor.java:241] [main] Processing chromosome C22468 Processing chromosome C22468 INFO [2014-03-08 06:24:04,365] [Preprocessor.java:241] [main] Processing chromosome C22470 Processing chromosome C22470 INFO [2014-03-08 06:24:04,407] [Preprocessor.java:241] [main] Processing chromosome C22484 Processing chromosome C22484 INFO [2014-03-08 06:24:04,411] [Preprocessor.java:241] [main] Processing chromosome C22486 Processing chromosome C22486 INFO [2014-03-08 06:24:04,419] [Preprocessor.java:241] [main] Processing chromosome C22492 Processing chromosome C22492 INFO [2014-03-08 06:24:04,446] [Preprocessor.java:241] [main] Processing chromosome C22494 Processing chromosome C22494 INFO [2014-03-08 06:24:04,531] [Preprocessor.java:241] [main] Processing chromosome C22500 Processing chromosome C22500 INFO [2014-03-08 06:24:04,563] [Preprocessor.java:241] [main] Processing chromosome C2251 Processing chromosome C2251 INFO [2014-03-08 06:24:04,630] [Preprocessor.java:241] [main] Processing chromosome C22514 Processing chromosome C22514 INFO [2014-03-08 06:24:04,751] [Preprocessor.java:241] [main] Processing chromosome C22516 Processing chromosome C22516 INFO [2014-03-08 06:24:04,796] [Preprocessor.java:241] [main] Processing chromosome C22518 Processing chromosome C22518 INFO [2014-03-08 06:24:04,851] [Preprocessor.java:241] [main] Processing chromosome C22520 Processing chromosome C22520 INFO [2014-03-08 06:24:04,857] [Preprocessor.java:241] [main] Processing chromosome C22524 Processing chromosome C22524 INFO [2014-03-08 06:24:04,891] [Preprocessor.java:241] [main] Processing chromosome C22536 Processing chromosome C22536 INFO [2014-03-08 06:24:04,916] [Preprocessor.java:241] [main] Processing chromosome C22538 Processing chromosome C22538 INFO [2014-03-08 06:24:04,942] [Preprocessor.java:241] [main] Processing chromosome C22542 Processing chromosome C22542 INFO [2014-03-08 06:24:04,957] [Preprocessor.java:241] [main] Processing chromosome C22546 Processing chromosome C22546 INFO [2014-03-08 06:24:05,007] [Preprocessor.java:241] [main] Processing chromosome C22552 Processing chromosome C22552 INFO [2014-03-08 06:24:05,040] [Preprocessor.java:241] [main] Processing chromosome C22558 Processing chromosome C22558 INFO [2014-03-08 06:24:05,103] [Preprocessor.java:241] [main] Processing chromosome C22566 Processing chromosome C22566 INFO [2014-03-08 06:24:05,147] [Preprocessor.java:241] [main] Processing chromosome C22576 Processing chromosome C22576 INFO [2014-03-08 06:24:05,151] [Preprocessor.java:241] [main] Processing chromosome C22584 Processing chromosome C22584 INFO [2014-03-08 06:24:05,189] [Preprocessor.java:241] [main] Processing chromosome C22586 Processing chromosome C22586 INFO [2014-03-08 06:24:05,224] [Preprocessor.java:241] [main] Processing chromosome C22594 Processing chromosome C22594 INFO [2014-03-08 06:24:05,272] [Preprocessor.java:241] [main] Processing chromosome C22598 Processing chromosome C22598 INFO [2014-03-08 06:24:05,374] [Preprocessor.java:241] [main] Processing chromosome C22600 Processing chromosome C22600 INFO [2014-03-08 06:24:05,408] [Preprocessor.java:241] [main] Processing chromosome C22602 Processing chromosome C22602 INFO [2014-03-08 06:24:05,449] [Preprocessor.java:241] [main] Processing chromosome C22610 Processing chromosome C22610 INFO [2014-03-08 06:24:05,484] [Preprocessor.java:241] [main] Processing chromosome C22614 Processing chromosome C22614 INFO [2014-03-08 06:24:05,513] [Preprocessor.java:241] [main] Processing chromosome C22622 Processing chromosome C22622 INFO [2014-03-08 06:24:05,585] [Preprocessor.java:241] [main] Processing chromosome C22624 Processing chromosome C22624 INFO [2014-03-08 06:24:05,622] [Preprocessor.java:241] [main] Processing chromosome C22626 Processing chromosome C22626 INFO [2014-03-08 06:24:05,669] [Preprocessor.java:241] [main] Processing chromosome C22628 Processing chromosome C22628 INFO [2014-03-08 06:24:05,756] [Preprocessor.java:241] [main] Processing chromosome C22632 Processing chromosome C22632 INFO [2014-03-08 06:24:05,772] [Preprocessor.java:241] [main] Processing chromosome C22636 Processing chromosome C22636 INFO [2014-03-08 06:24:05,780] [Preprocessor.java:241] [main] Processing chromosome C22638 Processing chromosome C22638 INFO [2014-03-08 06:24:05,814] [Preprocessor.java:241] [main] Processing chromosome C22640 Processing chromosome C22640 INFO [2014-03-08 06:24:05,836] [Preprocessor.java:241] [main] Processing chromosome C22644 Processing chromosome C22644 INFO [2014-03-08 06:24:05,848] [Preprocessor.java:241] [main] Processing chromosome C22648 Processing chromosome C22648 INFO [2014-03-08 06:24:05,908] [Preprocessor.java:241] [main] Processing chromosome C22662 Processing chromosome C22662 INFO [2014-03-08 06:24:05,934] [Preprocessor.java:241] [main] Processing chromosome C22666 Processing chromosome C22666 INFO [2014-03-08 06:24:05,970] [Preprocessor.java:241] [main] Processing chromosome C22668 Processing chromosome C22668 INFO [2014-03-08 06:24:05,988] [Preprocessor.java:241] [main] Processing chromosome C22676 Processing chromosome C22676 INFO [2014-03-08 06:24:06,010] [Preprocessor.java:241] [main] Processing chromosome C22678 Processing chromosome C22678 INFO [2014-03-08 06:24:06,027] [Preprocessor.java:241] [main] Processing chromosome C22682 Processing chromosome C22682 INFO [2014-03-08 06:24:06,048] [Preprocessor.java:241] [main] Processing chromosome C22704 Processing chromosome C22704 INFO [2014-03-08 06:24:06,058] [Preprocessor.java:241] [main] Processing chromosome C22708 Processing chromosome C22708 INFO [2014-03-08 06:24:06,104] [Preprocessor.java:241] [main] Processing chromosome C22710 Processing chromosome C22710 INFO [2014-03-08 06:24:06,109] [Preprocessor.java:241] [main] Processing chromosome C22712 Processing chromosome C22712 INFO [2014-03-08 06:24:06,164] [Preprocessor.java:241] [main] Processing chromosome C22714 Processing chromosome C22714 INFO [2014-03-08 06:24:06,174] [Preprocessor.java:241] [main] Processing chromosome C22722 Processing chromosome C22722 INFO [2014-03-08 06:24:06,201] [Preprocessor.java:241] [main] Processing chromosome C22728 Processing chromosome C22728 INFO [2014-03-08 06:24:06,224] [Preprocessor.java:241] [main] Processing chromosome C22732 Processing chromosome C22732 INFO [2014-03-08 06:24:06,254] [Preprocessor.java:241] [main] Processing chromosome C22734 Processing chromosome C22734 INFO [2014-03-08 06:24:06,264] [Preprocessor.java:241] [main] Processing chromosome C22748 Processing chromosome C22748 INFO [2014-03-08 06:24:06,291] [Preprocessor.java:241] [main] Processing chromosome C22750 Processing chromosome C22750 INFO [2014-03-08 06:24:06,310] [Preprocessor.java:241] [main] Processing chromosome C22754 Processing chromosome C22754 INFO [2014-03-08 06:24:06,330] [Preprocessor.java:241] [main] Processing chromosome C22758 Processing chromosome C22758 INFO [2014-03-08 06:24:06,345] [Preprocessor.java:241] [main] Processing chromosome C22772 Processing chromosome C22772 INFO [2014-03-08 06:24:06,358] [Preprocessor.java:241] [main] Processing chromosome C22778 Processing chromosome C22778 INFO [2014-03-08 06:24:06,397] [Preprocessor.java:241] [main] Processing chromosome C22784 Processing chromosome C22784 INFO [2014-03-08 06:24:06,427] [Preprocessor.java:241] [main] Processing chromosome C22790 Processing chromosome C22790 INFO [2014-03-08 06:24:06,477] [Preprocessor.java:241] [main] Processing chromosome C22794 Processing chromosome C22794 INFO [2014-03-08 06:24:06,508] [Preprocessor.java:241] [main] Processing chromosome C22798 Processing chromosome C22798 INFO [2014-03-08 06:24:06,533] [Preprocessor.java:241] [main] Processing chromosome C22800 Processing chromosome C22800 INFO [2014-03-08 06:24:06,556] [Preprocessor.java:241] [main] Processing chromosome C22802 Processing chromosome C22802 INFO [2014-03-08 06:24:06,573] [Preprocessor.java:241] [main] Processing chromosome C22804 Processing chromosome C22804 INFO [2014-03-08 06:24:06,621] [Preprocessor.java:241] [main] Processing chromosome C22810 Processing chromosome C22810 INFO [2014-03-08 06:24:06,651] [Preprocessor.java:241] [main] Processing chromosome C22822 Processing chromosome C22822 INFO [2014-03-08 06:24:06,685] [Preprocessor.java:241] [main] Processing chromosome C22824 Processing chromosome C22824 INFO [2014-03-08 06:24:06,722] [Preprocessor.java:241] [main] Processing chromosome C22842 Processing chromosome C22842 INFO [2014-03-08 06:24:06,779] [Preprocessor.java:241] [main] Processing chromosome C22844 Processing chromosome C22844 INFO [2014-03-08 06:24:06,814] [Preprocessor.java:241] [main] Processing chromosome C2285 Processing chromosome C2285 INFO [2014-03-08 06:24:06,851] [Preprocessor.java:241] [main] Processing chromosome C22856 Processing chromosome C22856 INFO [2014-03-08 06:24:06,887] [Preprocessor.java:241] [main] Processing chromosome C22862 Processing chromosome C22862 INFO [2014-03-08 06:24:06,940] [Preprocessor.java:241] [main] Processing chromosome C22866 Processing chromosome C22866 INFO [2014-03-08 06:24:06,973] [Preprocessor.java:241] [main] Processing chromosome C22868 Processing chromosome C22868 INFO [2014-03-08 06:24:07,012] [Preprocessor.java:241] [main] Processing chromosome C22870 Processing chromosome C22870 INFO [2014-03-08 06:24:07,087] [Preprocessor.java:241] [main] Processing chromosome C22888 Processing chromosome C22888 INFO [2014-03-08 06:24:07,176] [Preprocessor.java:241] [main] Processing chromosome C22890 Processing chromosome C22890 INFO [2014-03-08 06:24:07,187] [Preprocessor.java:241] [main] Processing chromosome C22892 Processing chromosome C22892 INFO [2014-03-08 06:24:07,240] [Preprocessor.java:241] [main] Processing chromosome C22894 Processing chromosome C22894 INFO [2014-03-08 06:24:07,248] [Preprocessor.java:241] [main] Processing chromosome C22902 Processing chromosome C22902 INFO [2014-03-08 06:24:07,256] [Preprocessor.java:241] [main] Processing chromosome C22910 Processing chromosome C22910 INFO [2014-03-08 06:24:07,268] [Preprocessor.java:241] [main] Processing chromosome C22926 Processing chromosome C22926 INFO [2014-03-08 06:24:07,338] [Preprocessor.java:241] [main] Processing chromosome C22928 Processing chromosome C22928 INFO [2014-03-08 06:24:07,350] [Preprocessor.java:241] [main] Processing chromosome C2293 Processing chromosome C2293 INFO [2014-03-08 06:24:07,388] [Preprocessor.java:241] [main] Processing chromosome C22940 Processing chromosome C22940 INFO [2014-03-08 06:24:07,449] [Preprocessor.java:241] [main] Processing chromosome C22944 Processing chromosome C22944 INFO [2014-03-08 06:24:07,471] [Preprocessor.java:241] [main] Processing chromosome C22948 Processing chromosome C22948 INFO [2014-03-08 06:24:07,501] [Preprocessor.java:241] [main] Processing chromosome C22958 Processing chromosome C22958 INFO [2014-03-08 06:24:07,529] [Preprocessor.java:241] [main] Processing chromosome C22968 Processing chromosome C22968 INFO [2014-03-08 06:24:07,549] [Preprocessor.java:241] [main] Processing chromosome C22972 Processing chromosome C22972 INFO [2014-03-08 06:24:07,618] [Preprocessor.java:241] [main] Processing chromosome C22978 Processing chromosome C22978 INFO [2014-03-08 06:24:07,649] [Preprocessor.java:241] [main] Processing chromosome C22980 Processing chromosome C22980 INFO [2014-03-08 06:24:07,689] [Preprocessor.java:241] [main] Processing chromosome C22982 Processing chromosome C22982 INFO [2014-03-08 06:24:07,718] [Preprocessor.java:241] [main] Processing chromosome C22990 Processing chromosome C22990 INFO [2014-03-08 06:24:07,772] [Preprocessor.java:241] [main] Processing chromosome C22994 Processing chromosome C22994 INFO [2014-03-08 06:24:07,805] [Preprocessor.java:241] [main] Processing chromosome C22996 Processing chromosome C22996 INFO [2014-03-08 06:24:07,873] [Preprocessor.java:241] [main] Processing chromosome C22998 Processing chromosome C22998 INFO [2014-03-08 06:24:07,878] [Preprocessor.java:241] [main] Processing chromosome C23000 Processing chromosome C23000 INFO [2014-03-08 06:24:07,920] [Preprocessor.java:241] [main] Processing chromosome C23010 Processing chromosome C23010 INFO [2014-03-08 06:24:07,977] [Preprocessor.java:241] [main] Processing chromosome C23016 Processing chromosome C23016 INFO [2014-03-08 06:24:07,996] [Preprocessor.java:241] [main] Processing chromosome C23024 Processing chromosome C23024 INFO [2014-03-08 06:24:08,038] [Preprocessor.java:241] [main] Processing chromosome C23030 Processing chromosome C23030 INFO [2014-03-08 06:24:08,080] [Preprocessor.java:241] [main] Processing chromosome C23036 Processing chromosome C23036 INFO [2014-03-08 06:24:08,113] [Preprocessor.java:241] [main] Processing chromosome C23040 Processing chromosome C23040 INFO [2014-03-08 06:24:08,124] [Preprocessor.java:241] [main] Processing chromosome C23042 Processing chromosome C23042 INFO [2014-03-08 06:24:08,130] [Preprocessor.java:241] [main] Processing chromosome C23048 Processing chromosome C23048 INFO [2014-03-08 06:24:08,144] [Preprocessor.java:241] [main] Processing chromosome C23080 Processing chromosome C23080 INFO [2014-03-08 06:24:08,163] [Preprocessor.java:241] [main] Processing chromosome C23092 Processing chromosome C23092 INFO [2014-03-08 06:24:08,178] [Preprocessor.java:241] [main] Processing chromosome C23096 Processing chromosome C23096 INFO [2014-03-08 06:24:08,208] [Preprocessor.java:241] [main] Processing chromosome C23098 Processing chromosome C23098 INFO [2014-03-08 06:24:08,246] [Preprocessor.java:241] [main] Processing chromosome C23102 Processing chromosome C23102 INFO [2014-03-08 06:24:08,287] [Preprocessor.java:241] [main] Processing chromosome C23104 Processing chromosome C23104 INFO [2014-03-08 06:24:08,339] [Preprocessor.java:241] [main] Processing chromosome C23106 Processing chromosome C23106 INFO [2014-03-08 06:24:08,348] [Preprocessor.java:241] [main] Processing chromosome C23110 Processing chromosome C23110 INFO [2014-03-08 06:24:08,456] [Preprocessor.java:241] [main] Processing chromosome C23116 Processing chromosome C23116 INFO [2014-03-08 06:24:08,474] [Preprocessor.java:241] [main] Processing chromosome C23120 Processing chromosome C23120 INFO [2014-03-08 06:24:08,478] [Preprocessor.java:241] [main] Processing chromosome C23124 Processing chromosome C23124 INFO [2014-03-08 06:24:08,498] [Preprocessor.java:241] [main] Processing chromosome C23144 Processing chromosome C23144 INFO [2014-03-08 06:24:08,507] [Preprocessor.java:241] [main] Processing chromosome C23154 Processing chromosome C23154 INFO [2014-03-08 06:24:08,526] [Preprocessor.java:241] [main] Processing chromosome C23158 Processing chromosome C23158 INFO [2014-03-08 06:24:08,565] [Preprocessor.java:241] [main] Processing chromosome C23162 Processing chromosome C23162 INFO [2014-03-08 06:24:08,606] [Preprocessor.java:241] [main] Processing chromosome C23166 Processing chromosome C23166 INFO [2014-03-08 06:24:08,609] [Preprocessor.java:241] [main] Processing chromosome C2317 Processing chromosome C2317 INFO [2014-03-08 06:24:08,647] [Preprocessor.java:241] [main] Processing chromosome C23172 Processing chromosome C23172 INFO [2014-03-08 06:24:08,697] [Preprocessor.java:241] [main] Processing chromosome C23180 Processing chromosome C23180 INFO [2014-03-08 06:24:08,763] [Preprocessor.java:241] [main] Processing chromosome C23182 Processing chromosome C23182 INFO [2014-03-08 06:24:08,786] [Preprocessor.java:241] [main] Processing chromosome C2319 Processing chromosome C2319 INFO [2014-03-08 06:24:08,826] [Preprocessor.java:241] [main] Processing chromosome C23192 Processing chromosome C23192 INFO [2014-03-08 06:24:08,893] [Preprocessor.java:241] [main] Processing chromosome C23196 Processing chromosome C23196 INFO [2014-03-08 06:24:08,914] [Preprocessor.java:241] [main] Processing chromosome C23210 Processing chromosome C23210 INFO [2014-03-08 06:24:08,930] [Preprocessor.java:241] [main] Processing chromosome C23214 Processing chromosome C23214 INFO [2014-03-08 06:24:08,982] [Preprocessor.java:241] [main] Processing chromosome C23220 Processing chromosome C23220 INFO [2014-03-08 06:24:08,995] [Preprocessor.java:241] [main] Processing chromosome C23222 Processing chromosome C23222 INFO [2014-03-08 06:24:09,005] [Preprocessor.java:241] [main] Processing chromosome C23230 Processing chromosome C23230 INFO [2014-03-08 06:24:09,073] [Preprocessor.java:241] [main] Processing chromosome C23232 Processing chromosome C23232 INFO [2014-03-08 06:24:09,117] [Preprocessor.java:241] [main] Processing chromosome C23238 Processing chromosome C23238 INFO [2014-03-08 06:24:09,137] [Preprocessor.java:241] [main] Processing chromosome C23248 Processing chromosome C23248 INFO [2014-03-08 06:24:09,162] [Preprocessor.java:241] [main] Processing chromosome C23254 Processing chromosome C23254 INFO [2014-03-08 06:24:09,179] [Preprocessor.java:241] [main] Processing chromosome C23256 Processing chromosome C23256 INFO [2014-03-08 06:24:09,211] [Preprocessor.java:241] [main] Processing chromosome C23258 Processing chromosome C23258 INFO [2014-03-08 06:24:09,221] [Preprocessor.java:241] [main] Processing chromosome C23264 Processing chromosome C23264 INFO [2014-03-08 06:24:09,274] [Preprocessor.java:241] [main] Processing chromosome C23272 Processing chromosome C23272 INFO [2014-03-08 06:24:09,322] [Preprocessor.java:241] [main] Processing chromosome C23274 Processing chromosome C23274 INFO [2014-03-08 06:24:09,330] [Preprocessor.java:241] [main] Processing chromosome C23276 Processing chromosome C23276 INFO [2014-03-08 06:24:09,355] [Preprocessor.java:241] [main] Processing chromosome C23278 Processing chromosome C23278 INFO [2014-03-08 06:24:09,364] [Preprocessor.java:241] [main] Processing chromosome C23298 Processing chromosome C23298 INFO [2014-03-08 06:24:09,395] [Preprocessor.java:241] [main] Processing chromosome C23316 Processing chromosome C23316 INFO [2014-03-08 06:24:09,441] [Preprocessor.java:241] [main] Processing chromosome C23328 Processing chromosome C23328 INFO [2014-03-08 06:24:09,461] [Preprocessor.java:241] [main] Processing chromosome C23330 Processing chromosome C23330 INFO [2014-03-08 06:24:09,492] [Preprocessor.java:241] [main] Processing chromosome C23338 Processing chromosome C23338 INFO [2014-03-08 06:24:09,522] [Preprocessor.java:241] [main] Processing chromosome C23360 Processing chromosome C23360 INFO [2014-03-08 06:24:09,557] [Preprocessor.java:241] [main] Processing chromosome C23362 Processing chromosome C23362 INFO [2014-03-08 06:24:09,609] [Preprocessor.java:241] [main] Processing chromosome C23366 Processing chromosome C23366 INFO [2014-03-08 06:24:09,702] [Preprocessor.java:241] [main] Processing chromosome C23370 Processing chromosome C23370 INFO [2014-03-08 06:24:09,754] [Preprocessor.java:241] [main] Processing chromosome C23372 Processing chromosome C23372 INFO [2014-03-08 06:24:09,796] [Preprocessor.java:241] [main] Processing chromosome C23378 Processing chromosome C23378 INFO [2014-03-08 06:24:09,805] [Preprocessor.java:241] [main] Processing chromosome C23390 Processing chromosome C23390 INFO [2014-03-08 06:24:09,819] [Preprocessor.java:241] [main] Processing chromosome C23400 Processing chromosome C23400 INFO [2014-03-08 06:24:09,865] [Preprocessor.java:241] [main] Processing chromosome C23422 Processing chromosome C23422 INFO [2014-03-08 06:24:09,882] [Preprocessor.java:241] [main] Processing chromosome C23424 Processing chromosome C23424 INFO [2014-03-08 06:24:09,915] [Preprocessor.java:241] [main] Processing chromosome C23426 Processing chromosome C23426 INFO [2014-03-08 06:24:09,936] [Preprocessor.java:241] [main] Processing chromosome C23428 Processing chromosome C23428 INFO [2014-03-08 06:24:09,975] [Preprocessor.java:241] [main] Processing chromosome C23432 Processing chromosome C23432 INFO [2014-03-08 06:24:10,036] [Preprocessor.java:241] [main] Processing chromosome C23438 Processing chromosome C23438 INFO [2014-03-08 06:24:10,065] [Preprocessor.java:241] [main] Processing chromosome C23440 Processing chromosome C23440 INFO [2014-03-08 06:24:10,073] [Preprocessor.java:241] [main] Processing chromosome C23442 Processing chromosome C23442 INFO [2014-03-08 06:24:10,108] [Preprocessor.java:241] [main] Processing chromosome C23444 Processing chromosome C23444 INFO [2014-03-08 06:24:10,164] [Preprocessor.java:241] [main] Processing chromosome C23446 Processing chromosome C23446 INFO [2014-03-08 06:24:10,178] [Preprocessor.java:241] [main] Processing chromosome C23452 Processing chromosome C23452 INFO [2014-03-08 06:24:10,182] [Preprocessor.java:241] [main] Processing chromosome C23454 Processing chromosome C23454 INFO [2014-03-08 06:24:10,231] [Preprocessor.java:241] [main] Processing chromosome C23460 Processing chromosome C23460 INFO [2014-03-08 06:24:10,290] [Preprocessor.java:241] [main] Processing chromosome C23468 Processing chromosome C23468 INFO [2014-03-08 06:24:10,306] [Preprocessor.java:241] [main] Processing chromosome C23470 Processing chromosome C23470 INFO [2014-03-08 06:24:10,328] [Preprocessor.java:241] [main] Processing chromosome C23472 Processing chromosome C23472 INFO [2014-03-08 06:24:10,343] [Preprocessor.java:241] [main] Processing chromosome C23482 Processing chromosome C23482 INFO [2014-03-08 06:24:10,363] [Preprocessor.java:241] [main] Processing chromosome C23484 Processing chromosome C23484 INFO [2014-03-08 06:24:10,380] [Preprocessor.java:241] [main] Processing chromosome C23490 Processing chromosome C23490 INFO [2014-03-08 06:24:10,385] [Preprocessor.java:241] [main] Processing chromosome C23492 Processing chromosome C23492 INFO [2014-03-08 06:24:10,430] [Preprocessor.java:241] [main] Processing chromosome C23494 Processing chromosome C23494 INFO [2014-03-08 06:24:10,468] [Preprocessor.java:241] [main] Processing chromosome C23498 Processing chromosome C23498 INFO [2014-03-08 06:24:10,519] [Preprocessor.java:241] [main] Processing chromosome C23500 Processing chromosome C23500 INFO [2014-03-08 06:24:10,569] [Preprocessor.java:241] [main] Processing chromosome C23502 Processing chromosome C23502 INFO [2014-03-08 06:24:10,573] [Preprocessor.java:241] [main] Processing chromosome C23512 Processing chromosome C23512 INFO [2014-03-08 06:24:10,584] [Preprocessor.java:241] [main] Processing chromosome C23514 Processing chromosome C23514 INFO [2014-03-08 06:24:10,618] [Preprocessor.java:241] [main] Processing chromosome C23530 Processing chromosome C23530 INFO [2014-03-08 06:24:10,628] [Preprocessor.java:241] [main] Processing chromosome C23564 Processing chromosome C23564 INFO [2014-03-08 06:24:10,668] [Preprocessor.java:241] [main] Processing chromosome C23566 Processing chromosome C23566 INFO [2014-03-08 06:24:10,687] [Preprocessor.java:241] [main] Processing chromosome C23570 Processing chromosome C23570 INFO [2014-03-08 06:24:10,720] [Preprocessor.java:241] [main] Processing chromosome C23572 Processing chromosome C23572 INFO [2014-03-08 06:24:10,748] [Preprocessor.java:241] [main] Processing chromosome C23580 Processing chromosome C23580 INFO [2014-03-08 06:24:10,804] [Preprocessor.java:241] [main] Processing chromosome C23582 Processing chromosome C23582 INFO [2014-03-08 06:24:10,844] [Preprocessor.java:241] [main] Processing chromosome C23586 Processing chromosome C23586 INFO [2014-03-08 06:24:10,894] [Preprocessor.java:241] [main] Processing chromosome C23592 Processing chromosome C23592 INFO [2014-03-08 06:24:10,934] [Preprocessor.java:241] [main] Processing chromosome C23594 Processing chromosome C23594 INFO [2014-03-08 06:24:10,961] [Preprocessor.java:241] [main] Processing chromosome C23608 Processing chromosome C23608 INFO [2014-03-08 06:24:10,971] [Preprocessor.java:241] [main] Processing chromosome C23616 Processing chromosome C23616 INFO [2014-03-08 06:24:11,010] [Preprocessor.java:241] [main] Processing chromosome C23638 Processing chromosome C23638 INFO [2014-03-08 06:24:11,145] [Preprocessor.java:241] [main] Processing chromosome C23642 Processing chromosome C23642 INFO [2014-03-08 06:24:11,183] [Preprocessor.java:241] [main] Processing chromosome C23648 Processing chromosome C23648 INFO [2014-03-08 06:24:11,215] [Preprocessor.java:241] [main] Processing chromosome C23662 Processing chromosome C23662 INFO [2014-03-08 06:24:11,222] [Preprocessor.java:241] [main] Processing chromosome C23676 Processing chromosome C23676 INFO [2014-03-08 06:24:11,252] [Preprocessor.java:241] [main] Processing chromosome C23682 Processing chromosome C23682 INFO [2014-03-08 06:24:11,276] [Preprocessor.java:241] [main] Processing chromosome C23690 Processing chromosome C23690 INFO [2014-03-08 06:24:11,282] [Preprocessor.java:241] [main] Processing chromosome C23700 Processing chromosome C23700 INFO [2014-03-08 06:24:11,288] [Preprocessor.java:241] [main] Processing chromosome C23702 Processing chromosome C23702 INFO [2014-03-08 06:24:11,325] [Preprocessor.java:241] [main] Processing chromosome C23714 Processing chromosome C23714 INFO [2014-03-08 06:24:11,335] [Preprocessor.java:241] [main] Processing chromosome C23716 Processing chromosome C23716 INFO [2014-03-08 06:24:11,381] [Preprocessor.java:241] [main] Processing chromosome C23726 Processing chromosome C23726 INFO [2014-03-08 06:24:11,389] [Preprocessor.java:241] [main] Processing chromosome C23732 Processing chromosome C23732 INFO [2014-03-08 06:24:11,402] [Preprocessor.java:241] [main] Processing chromosome C23734 Processing chromosome C23734 INFO [2014-03-08 06:24:11,461] [Preprocessor.java:241] [main] Processing chromosome C23742 Processing chromosome C23742 INFO [2014-03-08 06:24:11,482] [Preprocessor.java:241] [main] Processing chromosome C23744 Processing chromosome C23744 INFO [2014-03-08 06:24:11,553] [Preprocessor.java:241] [main] Processing chromosome C23756 Processing chromosome C23756 INFO [2014-03-08 06:24:11,620] [Preprocessor.java:241] [main] Processing chromosome C23760 Processing chromosome C23760 INFO [2014-03-08 06:24:11,724] [Preprocessor.java:241] [main] Processing chromosome C23762 Processing chromosome C23762 INFO [2014-03-08 06:24:11,782] [Preprocessor.java:241] [main] Processing chromosome C23772 Processing chromosome C23772 INFO [2014-03-08 06:24:11,840] [Preprocessor.java:241] [main] Processing chromosome C23776 Processing chromosome C23776 INFO [2014-03-08 06:24:11,852] [Preprocessor.java:241] [main] Processing chromosome C23778 Processing chromosome C23778 INFO [2014-03-08 06:24:11,934] [Preprocessor.java:241] [main] Processing chromosome C23786 Processing chromosome C23786 INFO [2014-03-08 06:24:11,949] [Preprocessor.java:241] [main] Processing chromosome C23796 Processing chromosome C23796 INFO [2014-03-08 06:24:11,996] [Preprocessor.java:241] [main] Processing chromosome C23800 Processing chromosome C23800 INFO [2014-03-08 06:24:12,007] [Preprocessor.java:241] [main] Processing chromosome C23808 Processing chromosome C23808 INFO [2014-03-08 06:24:12,013] [Preprocessor.java:241] [main] Processing chromosome C23812 Processing chromosome C23812 INFO [2014-03-08 06:24:12,061] [Preprocessor.java:241] [main] Processing chromosome C23818 Processing chromosome C23818 INFO [2014-03-08 06:24:12,125] [Preprocessor.java:241] [main] Processing chromosome C23822 Processing chromosome C23822 INFO [2014-03-08 06:24:12,172] [Preprocessor.java:241] [main] Processing chromosome C23828 Processing chromosome C23828 INFO [2014-03-08 06:24:12,216] [Preprocessor.java:241] [main] Processing chromosome C23836 Processing chromosome C23836 INFO [2014-03-08 06:24:12,290] [Preprocessor.java:241] [main] Processing chromosome C23838 Processing chromosome C23838 INFO [2014-03-08 06:24:12,309] [Preprocessor.java:241] [main] Processing chromosome C23858 Processing chromosome C23858 INFO [2014-03-08 06:24:12,335] [Preprocessor.java:241] [main] Processing chromosome C23860 Processing chromosome C23860 INFO [2014-03-08 06:24:12,363] [Preprocessor.java:241] [main] Processing chromosome C23866 Processing chromosome C23866 INFO [2014-03-08 06:24:12,367] [Preprocessor.java:241] [main] Processing chromosome C23868 Processing chromosome C23868 INFO [2014-03-08 06:24:12,430] [Preprocessor.java:241] [main] Processing chromosome C23882 Processing chromosome C23882 INFO [2014-03-08 06:24:12,459] [Preprocessor.java:241] [main] Processing chromosome C23886 Processing chromosome C23886 INFO [2014-03-08 06:24:12,497] [Preprocessor.java:241] [main] Processing chromosome C23890 Processing chromosome C23890 INFO [2014-03-08 06:24:12,544] [Preprocessor.java:241] [main] Processing chromosome C23896 Processing chromosome C23896 INFO [2014-03-08 06:24:12,568] [Preprocessor.java:241] [main] Processing chromosome C23900 Processing chromosome C23900 INFO [2014-03-08 06:24:12,596] [Preprocessor.java:241] [main] Processing chromosome C23904 Processing chromosome C23904 INFO [2014-03-08 06:24:12,600] [Preprocessor.java:241] [main] Processing chromosome C23908 Processing chromosome C23908 INFO [2014-03-08 06:24:12,606] [Preprocessor.java:241] [main] Processing chromosome C23922 Processing chromosome C23922 INFO [2014-03-08 06:24:12,626] [Preprocessor.java:241] [main] Processing chromosome C23926 Processing chromosome C23926 INFO [2014-03-08 06:24:12,654] [Preprocessor.java:241] [main] Processing chromosome C23930 Processing chromosome C23930 INFO [2014-03-08 06:24:12,712] [Preprocessor.java:241] [main] Processing chromosome C23944 Processing chromosome C23944 INFO [2014-03-08 06:24:12,730] [Preprocessor.java:241] [main] Processing chromosome C23946 Processing chromosome C23946 INFO [2014-03-08 06:24:12,746] [Preprocessor.java:241] [main] Processing chromosome C23956 Processing chromosome C23956 INFO [2014-03-08 06:24:12,769] [Preprocessor.java:241] [main] Processing chromosome C23968 Processing chromosome C23968 INFO [2014-03-08 06:24:12,782] [Preprocessor.java:241] [main] Processing chromosome C23974 Processing chromosome C23974 INFO [2014-03-08 06:24:12,791] [Preprocessor.java:241] [main] Processing chromosome C24000 Processing chromosome C24000 INFO [2014-03-08 06:24:12,827] [Preprocessor.java:241] [main] Processing chromosome C24008 Processing chromosome C24008 INFO [2014-03-08 06:24:12,898] [Preprocessor.java:241] [main] Processing chromosome C24014 Processing chromosome C24014 INFO [2014-03-08 06:24:12,905] [Preprocessor.java:241] [main] Processing chromosome C24020 Processing chromosome C24020 INFO [2014-03-08 06:24:12,946] [Preprocessor.java:241] [main] Processing chromosome C24022 Processing chromosome C24022 INFO [2014-03-08 06:24:12,961] [Preprocessor.java:241] [main] Processing chromosome C24024 Processing chromosome C24024 INFO [2014-03-08 06:24:12,998] [Preprocessor.java:241] [main] Processing chromosome C24030 Processing chromosome C24030 INFO [2014-03-08 06:24:13,050] [Preprocessor.java:241] [main] Processing chromosome C24036 Processing chromosome C24036 INFO [2014-03-08 06:24:13,103] [Preprocessor.java:241] [main] Processing chromosome C24042 Processing chromosome C24042 INFO [2014-03-08 06:24:13,129] [Preprocessor.java:241] [main] Processing chromosome C24044 Processing chromosome C24044 INFO [2014-03-08 06:24:13,135] [Preprocessor.java:241] [main] Processing chromosome C24052 Processing chromosome C24052 INFO [2014-03-08 06:24:13,178] [Preprocessor.java:241] [main] Processing chromosome C24068 Processing chromosome C24068 INFO [2014-03-08 06:24:13,230] [Preprocessor.java:241] [main] Processing chromosome C24074 Processing chromosome C24074 INFO [2014-03-08 06:24:13,247] [Preprocessor.java:241] [main] Processing chromosome C24090 Processing chromosome C24090 INFO [2014-03-08 06:24:13,288] [Preprocessor.java:241] [main] Processing chromosome C24098 Processing chromosome C24098 INFO [2014-03-08 06:24:13,296] [Preprocessor.java:241] [main] Processing chromosome C24112 Processing chromosome C24112 INFO [2014-03-08 06:24:13,314] [Preprocessor.java:241] [main] Processing chromosome C24114 Processing chromosome C24114 INFO [2014-03-08 06:24:13,363] [Preprocessor.java:241] [main] Processing chromosome C24118 Processing chromosome C24118 INFO [2014-03-08 06:24:13,399] [Preprocessor.java:241] [main] Processing chromosome C24128 Processing chromosome C24128 INFO [2014-03-08 06:24:13,433] [Preprocessor.java:241] [main] Processing chromosome C24134 Processing chromosome C24134 INFO [2014-03-08 06:24:13,444] [Preprocessor.java:241] [main] Processing chromosome C24138 Processing chromosome C24138 INFO [2014-03-08 06:24:13,451] [Preprocessor.java:241] [main] Processing chromosome C24148 Processing chromosome C24148 INFO [2014-03-08 06:24:13,488] [Preprocessor.java:241] [main] Processing chromosome C24156 Processing chromosome C24156 INFO [2014-03-08 06:24:13,498] [Preprocessor.java:241] [main] Processing chromosome C24158 Processing chromosome C24158 INFO [2014-03-08 06:24:13,528] [Preprocessor.java:241] [main] Processing chromosome C24160 Processing chromosome C24160 INFO [2014-03-08 06:24:13,568] [Preprocessor.java:241] [main] Processing chromosome C24184 Processing chromosome C24184 INFO [2014-03-08 06:24:13,595] [Preprocessor.java:241] [main] Processing chromosome C24196 Processing chromosome C24196 INFO [2014-03-08 06:24:13,625] [Preprocessor.java:241] [main] Processing chromosome C24204 Processing chromosome C24204 INFO [2014-03-08 06:24:13,629] [Preprocessor.java:241] [main] Processing chromosome C24224 Processing chromosome C24224 INFO [2014-03-08 06:24:13,672] [Preprocessor.java:241] [main] Processing chromosome C24226 Processing chromosome C24226 INFO [2014-03-08 06:24:13,694] [Preprocessor.java:241] [main] Processing chromosome C24232 Processing chromosome C24232 INFO [2014-03-08 06:24:13,733] [Preprocessor.java:241] [main] Processing chromosome C24242 Processing chromosome C24242 INFO [2014-03-08 06:24:13,746] [Preprocessor.java:241] [main] Processing chromosome C24244 Processing chromosome C24244 INFO [2014-03-08 06:24:13,786] [Preprocessor.java:241] [main] Processing chromosome C24248 Processing chromosome C24248 INFO [2014-03-08 06:24:13,800] [Preprocessor.java:241] [main] Processing chromosome C24252 Processing chromosome C24252 INFO [2014-03-08 06:24:13,832] [Preprocessor.java:241] [main] Processing chromosome C24254 Processing chromosome C24254 INFO [2014-03-08 06:24:13,853] [Preprocessor.java:241] [main] Processing chromosome C24270 Processing chromosome C24270 INFO [2014-03-08 06:24:13,898] [Preprocessor.java:241] [main] Processing chromosome C24274 Processing chromosome C24274 INFO [2014-03-08 06:24:13,919] [Preprocessor.java:241] [main] Processing chromosome C24276 Processing chromosome C24276 INFO [2014-03-08 06:24:13,974] [Preprocessor.java:241] [main] Processing chromosome C24280 Processing chromosome C24280 INFO [2014-03-08 06:24:13,985] [Preprocessor.java:241] [main] Processing chromosome C24292 Processing chromosome C24292 INFO [2014-03-08 06:24:14,013] [Preprocessor.java:241] [main] Processing chromosome C24294 Processing chromosome C24294 INFO [2014-03-08 06:24:14,026] [Preprocessor.java:241] [main] Processing chromosome C24316 Processing chromosome C24316 INFO [2014-03-08 06:24:14,077] [Preprocessor.java:241] [main] Processing chromosome C24318 Processing chromosome C24318 INFO [2014-03-08 06:24:14,089] [Preprocessor.java:241] [main] Processing chromosome C24320 Processing chromosome C24320 INFO [2014-03-08 06:24:14,103] [Preprocessor.java:241] [main] Processing chromosome C24328 Processing chromosome C24328 INFO [2014-03-08 06:24:14,117] [Preprocessor.java:241] [main] Processing chromosome C24334 Processing chromosome C24334 INFO [2014-03-08 06:24:14,156] [Preprocessor.java:241] [main] Processing chromosome C24342 Processing chromosome C24342 INFO [2014-03-08 06:24:14,168] [Preprocessor.java:241] [main] Processing chromosome C24346 Processing chromosome C24346 INFO [2014-03-08 06:24:14,218] [Preprocessor.java:241] [main] Processing chromosome C24380 Processing chromosome C24380 INFO [2014-03-08 06:24:14,234] [Preprocessor.java:241] [main] Processing chromosome C24384 Processing chromosome C24384 INFO [2014-03-08 06:24:14,247] [Preprocessor.java:241] [main] Processing chromosome C24398 Processing chromosome C24398 INFO [2014-03-08 06:24:14,307] [Preprocessor.java:241] [main] Processing chromosome C24400 Processing chromosome C24400 INFO [2014-03-08 06:24:14,357] [Preprocessor.java:241] [main] Processing chromosome C24418 Processing chromosome C24418 INFO [2014-03-08 06:24:14,371] [Preprocessor.java:241] [main] Processing chromosome C24420 Processing chromosome C24420 INFO [2014-03-08 06:24:14,387] [Preprocessor.java:241] [main] Processing chromosome C24426 Processing chromosome C24426 INFO [2014-03-08 06:24:14,394] [Preprocessor.java:241] [main] Processing chromosome C24428 Processing chromosome C24428 INFO [2014-03-08 06:24:14,437] [Preprocessor.java:241] [main] Processing chromosome C24432 Processing chromosome C24432 INFO [2014-03-08 06:24:14,464] [Preprocessor.java:241] [main] Processing chromosome C24436 Processing chromosome C24436 INFO [2014-03-08 06:24:14,480] [Preprocessor.java:241] [main] Processing chromosome C24438 Processing chromosome C24438 INFO [2014-03-08 06:24:14,504] [Preprocessor.java:241] [main] Processing chromosome C24440 Processing chromosome C24440 INFO [2014-03-08 06:24:14,522] [Preprocessor.java:241] [main] Processing chromosome C24442 Processing chromosome C24442 INFO [2014-03-08 06:24:14,567] [Preprocessor.java:241] [main] Processing chromosome C24446 Processing chromosome C24446 INFO [2014-03-08 06:24:14,572] [Preprocessor.java:241] [main] Processing chromosome C24450 Processing chromosome C24450 INFO [2014-03-08 06:24:14,606] [Preprocessor.java:241] [main] Processing chromosome C24454 Processing chromosome C24454 INFO [2014-03-08 06:24:14,622] [Preprocessor.java:241] [main] Processing chromosome C24456 Processing chromosome C24456 INFO [2014-03-08 06:24:14,627] [Preprocessor.java:241] [main] Processing chromosome C24464 Processing chromosome C24464 INFO [2014-03-08 06:24:14,664] [Preprocessor.java:241] [main] Processing chromosome C24478 Processing chromosome C24478 INFO [2014-03-08 06:24:14,691] [Preprocessor.java:241] [main] Processing chromosome C24494 Processing chromosome C24494 INFO [2014-03-08 06:24:14,705] [Preprocessor.java:241] [main] Processing chromosome C24498 Processing chromosome C24498 INFO [2014-03-08 06:24:14,725] [Preprocessor.java:241] [main] Processing chromosome C24514 Processing chromosome C24514 INFO [2014-03-08 06:24:14,756] [Preprocessor.java:241] [main] Processing chromosome C24516 Processing chromosome C24516 INFO [2014-03-08 06:24:14,762] [Preprocessor.java:241] [main] Processing chromosome C24520 Processing chromosome C24520 INFO [2014-03-08 06:24:14,820] [Preprocessor.java:241] [main] Processing chromosome C24524 Processing chromosome C24524 INFO [2014-03-08 06:24:14,838] [Preprocessor.java:241] [main] Processing chromosome C24530 Processing chromosome C24530 INFO [2014-03-08 06:24:14,843] [Preprocessor.java:241] [main] Processing chromosome C24536 Processing chromosome C24536 INFO [2014-03-08 06:24:14,854] [Preprocessor.java:241] [main] Processing chromosome C24538 Processing chromosome C24538 INFO [2014-03-08 06:24:14,857] [Preprocessor.java:241] [main] Processing chromosome C24556 Processing chromosome C24556 INFO [2014-03-08 06:24:14,867] [Preprocessor.java:241] [main] Processing chromosome C24562 Processing chromosome C24562 INFO [2014-03-08 06:24:14,929] [Preprocessor.java:241] [main] Processing chromosome C24564 Processing chromosome C24564 INFO [2014-03-08 06:24:14,953] [Preprocessor.java:241] [main] Processing chromosome C24566 Processing chromosome C24566 INFO [2014-03-08 06:24:14,990] [Preprocessor.java:241] [main] Processing chromosome C24570 Processing chromosome C24570 INFO [2014-03-08 06:24:15,048] [Preprocessor.java:241] [main] Processing chromosome C24580 Processing chromosome C24580 INFO [2014-03-08 06:24:15,058] [Preprocessor.java:241] [main] Processing chromosome C24588 Processing chromosome C24588 INFO [2014-03-08 06:24:15,062] [Preprocessor.java:241] [main] Processing chromosome C2459 Processing chromosome C2459 INFO [2014-03-08 06:24:15,109] [Preprocessor.java:241] [main] Processing chromosome C24590 Processing chromosome C24590 INFO [2014-03-08 06:24:15,176] [Preprocessor.java:241] [main] Processing chromosome C24604 Processing chromosome C24604 INFO [2014-03-08 06:24:15,180] [Preprocessor.java:241] [main] Processing chromosome C24608 Processing chromosome C24608 INFO [2014-03-08 06:24:15,264] [Preprocessor.java:241] [main] Processing chromosome C24616 Processing chromosome C24616 INFO [2014-03-08 06:24:15,295] [Preprocessor.java:241] [main] Processing chromosome C24628 Processing chromosome C24628 INFO [2014-03-08 06:24:15,325] [Preprocessor.java:241] [main] Processing chromosome C24632 Processing chromosome C24632 INFO [2014-03-08 06:24:15,353] [Preprocessor.java:241] [main] Processing chromosome C24634 Processing chromosome C24634 INFO [2014-03-08 06:24:15,429] [Preprocessor.java:241] [main] Processing chromosome C24640 Processing chromosome C24640 INFO [2014-03-08 06:24:15,434] [Preprocessor.java:241] [main] Processing chromosome C24642 Processing chromosome C24642 INFO [2014-03-08 06:24:15,448] [Preprocessor.java:241] [main] Processing chromosome C24650 Processing chromosome C24650 INFO [2014-03-08 06:24:15,464] [Preprocessor.java:241] [main] Processing chromosome C24654 Processing chromosome C24654 INFO [2014-03-08 06:24:15,487] [Preprocessor.java:241] [main] Processing chromosome C24658 Processing chromosome C24658 INFO [2014-03-08 06:24:15,491] [Preprocessor.java:241] [main] Processing chromosome C24672 Processing chromosome C24672 INFO [2014-03-08 06:24:15,508] [Preprocessor.java:241] [main] Processing chromosome C24676 Processing chromosome C24676 INFO [2014-03-08 06:24:15,563] [Preprocessor.java:241] [main] Processing chromosome C24678 Processing chromosome C24678 INFO [2014-03-08 06:24:15,615] [Preprocessor.java:241] [main] Processing chromosome C24682 Processing chromosome C24682 INFO [2014-03-08 06:24:15,621] [Preprocessor.java:241] [main] Processing chromosome C24686 Processing chromosome C24686 INFO [2014-03-08 06:24:15,656] [Preprocessor.java:241] [main] Processing chromosome C2469 Processing chromosome C2469 INFO [2014-03-08 06:24:15,699] [Preprocessor.java:241] [main] Processing chromosome C24698 Processing chromosome C24698 INFO [2014-03-08 06:24:15,735] [Preprocessor.java:241] [main] Processing chromosome C24704 Processing chromosome C24704 INFO [2014-03-08 06:24:15,750] [Preprocessor.java:241] [main] Processing chromosome C24710 Processing chromosome C24710 INFO [2014-03-08 06:24:15,778] [Preprocessor.java:241] [main] Processing chromosome C24718 Processing chromosome C24718 INFO [2014-03-08 06:24:15,826] [Preprocessor.java:241] [main] Processing chromosome C24724 Processing chromosome C24724 INFO [2014-03-08 06:24:15,875] [Preprocessor.java:241] [main] Processing chromosome C24726 Processing chromosome C24726 INFO [2014-03-08 06:24:15,883] [Preprocessor.java:241] [main] Processing chromosome C24734 Processing chromosome C24734 INFO [2014-03-08 06:24:15,916] [Preprocessor.java:241] [main] Processing chromosome C24740 Processing chromosome C24740 INFO [2014-03-08 06:24:15,930] [Preprocessor.java:241] [main] Processing chromosome C24744 Processing chromosome C24744 INFO [2014-03-08 06:24:15,947] [Preprocessor.java:241] [main] Processing chromosome C24748 Processing chromosome C24748 INFO [2014-03-08 06:24:15,972] [Preprocessor.java:241] [main] Processing chromosome C24750 Processing chromosome C24750 INFO [2014-03-08 06:24:16,002] [Preprocessor.java:241] [main] Processing chromosome C24756 Processing chromosome C24756 INFO [2014-03-08 06:24:16,008] [Preprocessor.java:241] [main] Processing chromosome C24758 Processing chromosome C24758 INFO [2014-03-08 06:24:16,034] [Preprocessor.java:241] [main] Processing chromosome C24766 Processing chromosome C24766 INFO [2014-03-08 06:24:16,043] [Preprocessor.java:241] [main] Processing chromosome C24778 Processing chromosome C24778 INFO [2014-03-08 06:24:16,047] [Preprocessor.java:241] [main] Processing chromosome C2479 Processing chromosome C2479 INFO [2014-03-08 06:24:16,086] [Preprocessor.java:241] [main] Processing chromosome C24790 Processing chromosome C24790 INFO [2014-03-08 06:24:16,141] [Preprocessor.java:241] [main] Processing chromosome C24804 Processing chromosome C24804 INFO [2014-03-08 06:24:16,188] [Preprocessor.java:241] [main] Processing chromosome C24814 Processing chromosome C24814 INFO [2014-03-08 06:24:16,213] [Preprocessor.java:241] [main] Processing chromosome C24818 Processing chromosome C24818 INFO [2014-03-08 06:24:16,267] [Preprocessor.java:241] [main] Processing chromosome C24820 Processing chromosome C24820 INFO [2014-03-08 06:24:16,289] [Preprocessor.java:241] [main] Processing chromosome C24824 Processing chromosome C24824 INFO [2014-03-08 06:24:16,360] [Preprocessor.java:241] [main] Processing chromosome C24826 Processing chromosome C24826 INFO [2014-03-08 06:24:16,419] [Preprocessor.java:241] [main] Processing chromosome C24828 Processing chromosome C24828 INFO [2014-03-08 06:24:16,441] [Preprocessor.java:241] [main] Processing chromosome C24850 Processing chromosome C24850 INFO [2014-03-08 06:24:16,456] [Preprocessor.java:241] [main] Processing chromosome C24862 Processing chromosome C24862 INFO [2014-03-08 06:24:16,479] [Preprocessor.java:241] [main] Processing chromosome C24868 Processing chromosome C24868 INFO [2014-03-08 06:24:16,521] [Preprocessor.java:241] [main] Processing chromosome C24874 Processing chromosome C24874 INFO [2014-03-08 06:24:16,586] [Preprocessor.java:241] [main] Processing chromosome C24888 Processing chromosome C24888 INFO [2014-03-08 06:24:16,641] [Preprocessor.java:241] [main] Processing chromosome C24892 Processing chromosome C24892 INFO [2014-03-08 06:24:16,646] [Preprocessor.java:241] [main] Processing chromosome C24900 Processing chromosome C24900 INFO [2014-03-08 06:24:16,649] [Preprocessor.java:241] [main] Processing chromosome C24902 Processing chromosome C24902 INFO [2014-03-08 06:24:16,663] [Preprocessor.java:241] [main] Processing chromosome C24910 Processing chromosome C24910 INFO [2014-03-08 06:24:16,692] [Preprocessor.java:241] [main] Processing chromosome C24914 Processing chromosome C24914 INFO [2014-03-08 06:24:16,700] [Preprocessor.java:241] [main] Processing chromosome C24916 Processing chromosome C24916 INFO [2014-03-08 06:24:16,772] [Preprocessor.java:241] [main] Processing chromosome C24920 Processing chromosome C24920 INFO [2014-03-08 06:24:16,780] [Preprocessor.java:241] [main] Processing chromosome C24932 Processing chromosome C24932 INFO [2014-03-08 06:24:16,822] [Preprocessor.java:241] [main] Processing chromosome C24934 Processing chromosome C24934 INFO [2014-03-08 06:24:16,867] [Preprocessor.java:241] [main] Processing chromosome C24942 Processing chromosome C24942 INFO [2014-03-08 06:24:16,918] [Preprocessor.java:241] [main] Processing chromosome C24952 Processing chromosome C24952 INFO [2014-03-08 06:24:17,018] [Preprocessor.java:241] [main] Processing chromosome C24954 Processing chromosome C24954 INFO [2014-03-08 06:24:17,021] [Preprocessor.java:241] [main] Processing chromosome C24960 Processing chromosome C24960 INFO [2014-03-08 06:24:17,118] [Preprocessor.java:241] [main] Processing chromosome C24962 Processing chromosome C24962 INFO [2014-03-08 06:24:17,188] [Preprocessor.java:241] [main] Processing chromosome C24964 Processing chromosome C24964 INFO [2014-03-08 06:24:17,207] [Preprocessor.java:241] [main] Processing chromosome C24966 Processing chromosome C24966 INFO [2014-03-08 06:24:17,230] [Preprocessor.java:241] [main] Processing chromosome C2497 Processing chromosome C2497 INFO [2014-03-08 06:24:17,336] [Preprocessor.java:241] [main] Processing chromosome C24974 Processing chromosome C24974 INFO [2014-03-08 06:24:17,370] [Preprocessor.java:241] [main] Processing chromosome C24984 Processing chromosome C24984 INFO [2014-03-08 06:24:17,423] [Preprocessor.java:241] [main] Processing chromosome C24994 Processing chromosome C24994 INFO [2014-03-08 06:24:17,540] [Preprocessor.java:241] [main] Processing chromosome C25 Processing chromosome C25 INFO [2014-03-08 06:24:17,614] [Preprocessor.java:241] [main] Processing chromosome C25014 Processing chromosome C25014 INFO [2014-03-08 06:24:17,676] [Preprocessor.java:241] [main] Processing chromosome C25026 Processing chromosome C25026 INFO [2014-03-08 06:24:17,691] [Preprocessor.java:241] [main] Processing chromosome C25032 Processing chromosome C25032 INFO [2014-03-08 06:24:17,708] [Preprocessor.java:241] [main] Processing chromosome C25038 Processing chromosome C25038 INFO [2014-03-08 06:24:17,712] [Preprocessor.java:241] [main] Processing chromosome C25042 Processing chromosome C25042 INFO [2014-03-08 06:24:17,716] [Preprocessor.java:241] [main] Processing chromosome C25050 Processing chromosome C25050 INFO [2014-03-08 06:24:17,729] [Preprocessor.java:241] [main] Processing chromosome C25052 Processing chromosome C25052 INFO [2014-03-08 06:24:17,741] [Preprocessor.java:241] [main] Processing chromosome C25054 Processing chromosome C25054 INFO [2014-03-08 06:24:17,771] [Preprocessor.java:241] [main] Processing chromosome C25064 Processing chromosome C25064 INFO [2014-03-08 06:24:17,780] [Preprocessor.java:241] [main] Processing chromosome C25066 Processing chromosome C25066 INFO [2014-03-08 06:24:17,798] [Preprocessor.java:241] [main] Processing chromosome C25074 Processing chromosome C25074 INFO [2014-03-08 06:24:17,815] [Preprocessor.java:241] [main] Processing chromosome C25084 Processing chromosome C25084 INFO [2014-03-08 06:24:17,824] [Preprocessor.java:241] [main] Processing chromosome C25088 Processing chromosome C25088 INFO [2014-03-08 06:24:17,835] [Preprocessor.java:241] [main] Processing chromosome C25096 Processing chromosome C25096 INFO [2014-03-08 06:24:17,848] [Preprocessor.java:241] [main] Processing chromosome C25102 Processing chromosome C25102 INFO [2014-03-08 06:24:17,903] [Preprocessor.java:241] [main] Processing chromosome C25106 Processing chromosome C25106 INFO [2014-03-08 06:24:18,288] [Preprocessor.java:241] [main] Processing chromosome C25108 Processing chromosome C25108 INFO [2014-03-08 06:24:18,389] [Preprocessor.java:241] [main] Processing chromosome C25116 Processing chromosome C25116 INFO [2014-03-08 06:24:18,432] [Preprocessor.java:241] [main] Processing chromosome C25118 Processing chromosome C25118 INFO [2014-03-08 06:24:18,440] [Preprocessor.java:241] [main] Processing chromosome C25124 Processing chromosome C25124 INFO [2014-03-08 06:24:18,474] [Preprocessor.java:241] [main] Processing chromosome C25126 Processing chromosome C25126 INFO [2014-03-08 06:24:18,480] [Preprocessor.java:241] [main] Processing chromosome C25140 Processing chromosome C25140 INFO [2014-03-08 06:24:18,496] [Preprocessor.java:241] [main] Processing chromosome C25178 Processing chromosome C25178 INFO [2014-03-08 06:24:18,587] [Preprocessor.java:241] [main] Processing chromosome C25180 Processing chromosome C25180 INFO [2014-03-08 06:24:18,655] [Preprocessor.java:241] [main] Processing chromosome C25184 Processing chromosome C25184 INFO [2014-03-08 06:24:18,659] [Preprocessor.java:241] [main] Processing chromosome C25190 Processing chromosome C25190 INFO [2014-03-08 06:24:18,662] [Preprocessor.java:241] [main] Processing chromosome C25196 Processing chromosome C25196 INFO [2014-03-08 06:24:18,685] [Preprocessor.java:241] [main] Processing chromosome C25206 Processing chromosome C25206 INFO [2014-03-08 06:24:18,715] [Preprocessor.java:241] [main] Processing chromosome C25214 Processing chromosome C25214 INFO [2014-03-08 06:24:18,733] [Preprocessor.java:241] [main] Processing chromosome C25218 Processing chromosome C25218 INFO [2014-03-08 06:24:18,756] [Preprocessor.java:241] [main] Processing chromosome C25228 Processing chromosome C25228 INFO [2014-03-08 06:24:18,796] [Preprocessor.java:241] [main] Processing chromosome C25230 Processing chromosome C25230 INFO [2014-03-08 06:24:18,861] [Preprocessor.java:241] [main] Processing chromosome C25248 Processing chromosome C25248 INFO [2014-03-08 06:24:18,879] [Preprocessor.java:241] [main] Processing chromosome C25274 Processing chromosome C25274 INFO [2014-03-08 06:24:18,896] [Preprocessor.java:241] [main] Processing chromosome C25290 Processing chromosome C25290 INFO [2014-03-08 06:24:18,926] [Preprocessor.java:241] [main] Processing chromosome C25298 Processing chromosome C25298 INFO [2014-03-08 06:24:18,959] [Preprocessor.java:241] [main] Processing chromosome C25310 Processing chromosome C25310 INFO [2014-03-08 06:24:19,009] [Preprocessor.java:241] [main] Processing chromosome C25314 Processing chromosome C25314 INFO [2014-03-08 06:24:19,057] [Preprocessor.java:241] [main] Processing chromosome C25324 Processing chromosome C25324 INFO [2014-03-08 06:24:19,068] [Preprocessor.java:241] [main] Processing chromosome C25328 Processing chromosome C25328 INFO [2014-03-08 06:24:19,106] [Preprocessor.java:241] [main] Processing chromosome C2533 Processing chromosome C2533 INFO [2014-03-08 06:24:19,147] [Preprocessor.java:241] [main] Processing chromosome C25334 Processing chromosome C25334 INFO [2014-03-08 06:24:19,184] [Preprocessor.java:241] [main] Processing chromosome C25336 Processing chromosome C25336 INFO [2014-03-08 06:24:19,192] [Preprocessor.java:241] [main] Processing chromosome C25344 Processing chromosome C25344 INFO [2014-03-08 06:24:19,240] [Preprocessor.java:241] [main] Processing chromosome C25346 Processing chromosome C25346 INFO [2014-03-08 06:24:19,256] [Preprocessor.java:241] [main] Processing chromosome C25352 Processing chromosome C25352 INFO [2014-03-08 06:24:19,273] [Preprocessor.java:241] [main] Processing chromosome C25360 Processing chromosome C25360 INFO [2014-03-08 06:24:19,322] [Preprocessor.java:241] [main] Processing chromosome C25384 Processing chromosome C25384 INFO [2014-03-08 06:24:19,333] [Preprocessor.java:241] [main] Processing chromosome C25394 Processing chromosome C25394 INFO [2014-03-08 06:24:19,363] [Preprocessor.java:241] [main] Processing chromosome C25404 Processing chromosome C25404 INFO [2014-03-08 06:24:19,379] [Preprocessor.java:241] [main] Processing chromosome C2541 Processing chromosome C2541 INFO [2014-03-08 06:24:19,418] [Preprocessor.java:241] [main] Processing chromosome C25414 Processing chromosome C25414 INFO [2014-03-08 06:24:19,448] [Preprocessor.java:241] [main] Processing chromosome C25418 Processing chromosome C25418 INFO [2014-03-08 06:24:19,465] [Preprocessor.java:241] [main] Processing chromosome C25420 Processing chromosome C25420 INFO [2014-03-08 06:24:19,498] [Preprocessor.java:241] [main] Processing chromosome C25424 Processing chromosome C25424 INFO [2014-03-08 06:24:19,513] [Preprocessor.java:241] [main] Processing chromosome C2543 Processing chromosome C2543 INFO [2014-03-08 06:24:19,586] [Preprocessor.java:241] [main] Processing chromosome C25448 Processing chromosome C25448 INFO [2014-03-08 06:24:19,625] [Preprocessor.java:241] [main] Processing chromosome C2545 Processing chromosome C2545 INFO [2014-03-08 06:24:19,697] [Preprocessor.java:241] [main] Processing chromosome C25456 Processing chromosome C25456 INFO [2014-03-08 06:24:19,707] [Preprocessor.java:241] [main] Processing chromosome C25466 Processing chromosome C25466 INFO [2014-03-08 06:24:19,723] [Preprocessor.java:241] [main] Processing chromosome C25468 Processing chromosome C25468 INFO [2014-03-08 06:24:19,734] [Preprocessor.java:241] [main] Processing chromosome C25470 Processing chromosome C25470 INFO [2014-03-08 06:24:19,760] [Preprocessor.java:241] [main] Processing chromosome C25494 Processing chromosome C25494 INFO [2014-03-08 06:24:19,784] [Preprocessor.java:241] [main] Processing chromosome C25496 Processing chromosome C25496 INFO [2014-03-08 06:24:19,791] [Preprocessor.java:241] [main] Processing chromosome C25498 Processing chromosome C25498 INFO [2014-03-08 06:24:19,824] [Preprocessor.java:241] [main] Processing chromosome C25504 Processing chromosome C25504 INFO [2014-03-08 06:24:19,862] [Preprocessor.java:241] [main] Processing chromosome C25528 Processing chromosome C25528 INFO [2014-03-08 06:24:19,913] [Preprocessor.java:241] [main] Processing chromosome C25540 Processing chromosome C25540 INFO [2014-03-08 06:24:19,939] [Preprocessor.java:241] [main] Processing chromosome C25542 Processing chromosome C25542 INFO [2014-03-08 06:24:19,956] [Preprocessor.java:241] [main] Processing chromosome C25544 Processing chromosome C25544 INFO [2014-03-08 06:24:19,973] [Preprocessor.java:241] [main] Processing chromosome C25546 Processing chromosome C25546 INFO [2014-03-08 06:24:20,000] [Preprocessor.java:241] [main] Processing chromosome C25550 Processing chromosome C25550 INFO [2014-03-08 06:24:20,039] [Preprocessor.java:241] [main] Processing chromosome C25556 Processing chromosome C25556 INFO [2014-03-08 06:24:20,043] [Preprocessor.java:241] [main] Processing chromosome C25558 Processing chromosome C25558 INFO [2014-03-08 06:24:20,068] [Preprocessor.java:241] [main] Processing chromosome C25564 Processing chromosome C25564 INFO [2014-03-08 06:24:20,100] [Preprocessor.java:241] [main] Processing chromosome C25572 Processing chromosome C25572 INFO [2014-03-08 06:24:20,109] [Preprocessor.java:241] [main] Processing chromosome C25580 Processing chromosome C25580 INFO [2014-03-08 06:24:20,153] [Preprocessor.java:241] [main] Processing chromosome C25592 Processing chromosome C25592 INFO [2014-03-08 06:24:20,168] [Preprocessor.java:241] [main] Processing chromosome C25596 Processing chromosome C25596 INFO [2014-03-08 06:24:20,188] [Preprocessor.java:241] [main] Processing chromosome C25612 Processing chromosome C25612 INFO [2014-03-08 06:24:20,194] [Preprocessor.java:241] [main] Processing chromosome C25614 Processing chromosome C25614 INFO [2014-03-08 06:24:20,203] [Preprocessor.java:241] [main] Processing chromosome C25620 Processing chromosome C25620 INFO [2014-03-08 06:24:20,232] [Preprocessor.java:241] [main] Processing chromosome C25630 Processing chromosome C25630 INFO [2014-03-08 06:24:20,272] [Preprocessor.java:241] [main] Processing chromosome C25634 Processing chromosome C25634 INFO [2014-03-08 06:24:20,313] [Preprocessor.java:241] [main] Processing chromosome C25644 Processing chromosome C25644 INFO [2014-03-08 06:24:20,362] [Preprocessor.java:241] [main] Processing chromosome C25648 Processing chromosome C25648 INFO [2014-03-08 06:24:20,404] [Preprocessor.java:241] [main] Processing chromosome C25652 Processing chromosome C25652 INFO [2014-03-08 06:24:20,411] [Preprocessor.java:241] [main] Processing chromosome C25654 Processing chromosome C25654 INFO [2014-03-08 06:24:20,449] [Preprocessor.java:241] [main] Processing chromosome C25662 Processing chromosome C25662 INFO [2014-03-08 06:24:20,453] [Preprocessor.java:241] [main] Processing chromosome C25670 Processing chromosome C25670 INFO [2014-03-08 06:24:20,461] [Preprocessor.java:241] [main] Processing chromosome C25676 Processing chromosome C25676 INFO [2014-03-08 06:24:20,478] [Preprocessor.java:241] [main] Processing chromosome C25678 Processing chromosome C25678 INFO [2014-03-08 06:24:20,501] [Preprocessor.java:241] [main] Processing chromosome C25698 Processing chromosome C25698 INFO [2014-03-08 06:24:20,556] [Preprocessor.java:241] [main] Processing chromosome C25706 Processing chromosome C25706 INFO [2014-03-08 06:24:20,597] [Preprocessor.java:241] [main] Processing chromosome C25708 Processing chromosome C25708 INFO [2014-03-08 06:24:20,622] [Preprocessor.java:241] [main] Processing chromosome C25722 Processing chromosome C25722 INFO [2014-03-08 06:24:20,652] [Preprocessor.java:241] [main] Processing chromosome C25730 Processing chromosome C25730 INFO [2014-03-08 06:24:20,658] [Preprocessor.java:241] [main] Processing chromosome C25734 Processing chromosome C25734 INFO [2014-03-08 06:24:20,692] [Preprocessor.java:241] [main] Processing chromosome C25740 Processing chromosome C25740 INFO [2014-03-08 06:24:20,727] [Preprocessor.java:241] [main] Processing chromosome C25744 Processing chromosome C25744 INFO [2014-03-08 06:24:20,770] [Preprocessor.java:241] [main] Processing chromosome C25748 Processing chromosome C25748 INFO [2014-03-08 06:24:20,777] [Preprocessor.java:241] [main] Processing chromosome C25752 Processing chromosome C25752 INFO [2014-03-08 06:24:20,797] [Preprocessor.java:241] [main] Processing chromosome C25756 Processing chromosome C25756 INFO [2014-03-08 06:24:20,823] [Preprocessor.java:241] [main] Processing chromosome C25758 Processing chromosome C25758 INFO [2014-03-08 06:24:20,855] [Preprocessor.java:241] [main] Processing chromosome C25762 Processing chromosome C25762 INFO [2014-03-08 06:24:20,891] [Preprocessor.java:241] [main] Processing chromosome C25766 Processing chromosome C25766 INFO [2014-03-08 06:24:20,896] [Preprocessor.java:241] [main] Processing chromosome C25778 Processing chromosome C25778 INFO [2014-03-08 06:24:20,907] [Preprocessor.java:241] [main] Processing chromosome C25780 Processing chromosome C25780 INFO [2014-03-08 06:24:20,912] [Preprocessor.java:241] [main] Processing chromosome C25792 Processing chromosome C25792 INFO [2014-03-08 06:24:20,957] [Preprocessor.java:241] [main] Processing chromosome C25804 Processing chromosome C25804 INFO [2014-03-08 06:24:21,002] [Preprocessor.java:241] [main] Processing chromosome C25818 Processing chromosome C25818 INFO [2014-03-08 06:24:21,048] [Preprocessor.java:241] [main] Processing chromosome C25820 Processing chromosome C25820 INFO [2014-03-08 06:24:21,058] [Preprocessor.java:241] [main] Processing chromosome C25822 Processing chromosome C25822 INFO [2014-03-08 06:24:21,092] [Preprocessor.java:241] [main] Processing chromosome C25826 Processing chromosome C25826 INFO [2014-03-08 06:24:21,109] [Preprocessor.java:241] [main] Processing chromosome C25828 Processing chromosome C25828 INFO [2014-03-08 06:24:21,134] [Preprocessor.java:241] [main] Processing chromosome C2583 Processing chromosome C2583 INFO [2014-03-08 06:24:21,177] [Preprocessor.java:241] [main] Processing chromosome C25834 Processing chromosome C25834 INFO [2014-03-08 06:24:21,250] [Preprocessor.java:241] [main] Processing chromosome C25838 Processing chromosome C25838 INFO [2014-03-08 06:24:21,260] [Preprocessor.java:241] [main] Processing chromosome C25858 Processing chromosome C25858 INFO [2014-03-08 06:24:21,280] [Preprocessor.java:241] [main] Processing chromosome C25860 Processing chromosome C25860 INFO [2014-03-08 06:24:21,283] [Preprocessor.java:241] [main] Processing chromosome C25864 Processing chromosome C25864 INFO [2014-03-08 06:24:21,313] [Preprocessor.java:241] [main] Processing chromosome C25866 Processing chromosome C25866 INFO [2014-03-08 06:24:21,337] [Preprocessor.java:241] [main] Processing chromosome C25876 Processing chromosome C25876 INFO [2014-03-08 06:24:21,394] [Preprocessor.java:241] [main] Processing chromosome C25882 Processing chromosome C25882 INFO [2014-03-08 06:24:21,398] [Preprocessor.java:241] [main] Processing chromosome C25896 Processing chromosome C25896 INFO [2014-03-08 06:24:21,445] [Preprocessor.java:241] [main] Processing chromosome C25898 Processing chromosome C25898 INFO [2014-03-08 06:24:21,478] [Preprocessor.java:241] [main] Processing chromosome C25900 Processing chromosome C25900 INFO [2014-03-08 06:24:21,484] [Preprocessor.java:241] [main] Processing chromosome C25912 Processing chromosome C25912 INFO [2014-03-08 06:24:21,530] [Preprocessor.java:241] [main] Processing chromosome C25928 Processing chromosome C25928 INFO [2014-03-08 06:24:21,578] [Preprocessor.java:241] [main] Processing chromosome C25930 Processing chromosome C25930 INFO [2014-03-08 06:24:21,590] [Preprocessor.java:241] [main] Processing chromosome C25932 Processing chromosome C25932 INFO [2014-03-08 06:24:21,642] [Preprocessor.java:241] [main] Processing chromosome C25940 Processing chromosome C25940 INFO [2014-03-08 06:24:21,702] [Preprocessor.java:241] [main] Processing chromosome C25946 Processing chromosome C25946 INFO [2014-03-08 06:24:21,717] [Preprocessor.java:241] [main] Processing chromosome C25954 Processing chromosome C25954 INFO [2014-03-08 06:24:21,742] [Preprocessor.java:241] [main] Processing chromosome C25962 Processing chromosome C25962 INFO [2014-03-08 06:24:21,766] [Preprocessor.java:241] [main] Processing chromosome C25966 Processing chromosome C25966 INFO [2014-03-08 06:24:21,791] [Preprocessor.java:241] [main] Processing chromosome C25968 Processing chromosome C25968 INFO [2014-03-08 06:24:21,817] [Preprocessor.java:241] [main] Processing chromosome C25970 Processing chromosome C25970 INFO [2014-03-08 06:24:21,836] [Preprocessor.java:241] [main] Processing chromosome C25972 Processing chromosome C25972 INFO [2014-03-08 06:24:21,851] [Preprocessor.java:241] [main] Processing chromosome C25980 Processing chromosome C25980 INFO [2014-03-08 06:24:21,915] [Preprocessor.java:241] [main] Processing chromosome C25990 Processing chromosome C25990 INFO [2014-03-08 06:24:21,950] [Preprocessor.java:241] [main] Processing chromosome C25998 Processing chromosome C25998 INFO [2014-03-08 06:24:21,996] [Preprocessor.java:241] [main] Processing chromosome C26002 Processing chromosome C26002 INFO [2014-03-08 06:24:22,026] [Preprocessor.java:241] [main] Processing chromosome C26004 Processing chromosome C26004 INFO [2014-03-08 06:24:22,073] [Preprocessor.java:241] [main] Processing chromosome C26010 Processing chromosome C26010 INFO [2014-03-08 06:24:22,083] [Preprocessor.java:241] [main] Processing chromosome C26018 Processing chromosome C26018 INFO [2014-03-08 06:24:22,100] [Preprocessor.java:241] [main] Processing chromosome C26032 Processing chromosome C26032 INFO [2014-03-08 06:24:22,123] [Preprocessor.java:241] [main] Processing chromosome C26040 Processing chromosome C26040 INFO [2014-03-08 06:24:22,154] [Preprocessor.java:241] [main] Processing chromosome C26054 Processing chromosome C26054 INFO [2014-03-08 06:24:22,177] [Preprocessor.java:241] [main] Processing chromosome C26066 Processing chromosome C26066 INFO [2014-03-08 06:24:22,193] [Preprocessor.java:241] [main] Processing chromosome C26070 Processing chromosome C26070 INFO [2014-03-08 06:24:22,203] [Preprocessor.java:241] [main] Processing chromosome C26078 Processing chromosome C26078 INFO [2014-03-08 06:24:22,243] [Preprocessor.java:241] [main] Processing chromosome C26082 Processing chromosome C26082 INFO [2014-03-08 06:24:22,276] [Preprocessor.java:241] [main] Processing chromosome C26084 Processing chromosome C26084 INFO [2014-03-08 06:24:22,313] [Preprocessor.java:241] [main] Processing chromosome C26088 Processing chromosome C26088 INFO [2014-03-08 06:24:22,322] [Preprocessor.java:241] [main] Processing chromosome C26094 Processing chromosome C26094 INFO [2014-03-08 06:24:22,326] [Preprocessor.java:241] [main] Processing chromosome C26096 Processing chromosome C26096 INFO [2014-03-08 06:24:22,335] [Preprocessor.java:241] [main] Processing chromosome C26102 Processing chromosome C26102 INFO [2014-03-08 06:24:22,381] [Preprocessor.java:241] [main] Processing chromosome C26108 Processing chromosome C26108 INFO [2014-03-08 06:24:22,412] [Preprocessor.java:241] [main] Processing chromosome C26118 Processing chromosome C26118 INFO [2014-03-08 06:24:22,449] [Preprocessor.java:241] [main] Processing chromosome C26122 Processing chromosome C26122 INFO [2014-03-08 06:24:22,452] [Preprocessor.java:241] [main] Processing chromosome C26128 Processing chromosome C26128 INFO [2014-03-08 06:24:22,471] [Preprocessor.java:241] [main] Processing chromosome C26134 Processing chromosome C26134 INFO [2014-03-08 06:24:22,519] [Preprocessor.java:241] [main] Processing chromosome C26140 Processing chromosome C26140 INFO [2014-03-08 06:24:22,534] [Preprocessor.java:241] [main] Processing chromosome C26148 Processing chromosome C26148 INFO [2014-03-08 06:24:22,576] [Preprocessor.java:241] [main] Processing chromosome C26150 Processing chromosome C26150 INFO [2014-03-08 06:24:22,587] [Preprocessor.java:241] [main] Processing chromosome C26152 Processing chromosome C26152 INFO [2014-03-08 06:24:22,591] [Preprocessor.java:241] [main] Processing chromosome C26154 Processing chromosome C26154 INFO [2014-03-08 06:24:22,595] [Preprocessor.java:241] [main] Processing chromosome C26156 Processing chromosome C26156 INFO [2014-03-08 06:24:22,616] [Preprocessor.java:241] [main] Processing chromosome C26168 Processing chromosome C26168 INFO [2014-03-08 06:24:22,668] [Preprocessor.java:241] [main] Processing chromosome C26170 Processing chromosome C26170 INFO [2014-03-08 06:24:22,675] [Preprocessor.java:241] [main] Processing chromosome C26174 Processing chromosome C26174 INFO [2014-03-08 06:24:22,678] [Preprocessor.java:241] [main] Processing chromosome C26180 Processing chromosome C26180 INFO [2014-03-08 06:24:22,690] [Preprocessor.java:241] [main] Processing chromosome C26184 Processing chromosome C26184 INFO [2014-03-08 06:24:22,709] [Preprocessor.java:241] [main] Processing chromosome C26190 Processing chromosome C26190 INFO [2014-03-08 06:24:22,718] [Preprocessor.java:241] [main] Processing chromosome C26192 Processing chromosome C26192 INFO [2014-03-08 06:24:22,772] [Preprocessor.java:241] [main] Processing chromosome C26196 Processing chromosome C26196 INFO [2014-03-08 06:24:22,791] [Preprocessor.java:241] [main] Processing chromosome C26198 Processing chromosome C26198 INFO [2014-03-08 06:24:22,821] [Preprocessor.java:241] [main] Processing chromosome C26204 Processing chromosome C26204 INFO [2014-03-08 06:24:22,826] [Preprocessor.java:241] [main] Processing chromosome C26206 Processing chromosome C26206 INFO [2014-03-08 06:24:22,845] [Preprocessor.java:241] [main] Processing chromosome C26212 Processing chromosome C26212 INFO [2014-03-08 06:24:22,880] [Preprocessor.java:241] [main] Processing chromosome C26226 Processing chromosome C26226 INFO [2014-03-08 06:24:22,891] [Preprocessor.java:241] [main] Processing chromosome C26228 Processing chromosome C26228 INFO [2014-03-08 06:24:22,907] [Preprocessor.java:241] [main] Processing chromosome C26230 Processing chromosome C26230 INFO [2014-03-08 06:24:22,926] [Preprocessor.java:241] [main] Processing chromosome C26236 Processing chromosome C26236 INFO [2014-03-08 06:24:22,938] [Preprocessor.java:241] [main] Processing chromosome C26238 Processing chromosome C26238 INFO [2014-03-08 06:24:22,948] [Preprocessor.java:241] [main] Processing chromosome C26240 Processing chromosome C26240 INFO [2014-03-08 06:24:22,972] [Preprocessor.java:241] [main] Processing chromosome C26244 Processing chromosome C26244 INFO [2014-03-08 06:24:23,014] [Preprocessor.java:241] [main] Processing chromosome C26246 Processing chromosome C26246 INFO [2014-03-08 06:24:23,036] [Preprocessor.java:241] [main] Processing chromosome C26256 Processing chromosome C26256 INFO [2014-03-08 06:24:23,047] [Preprocessor.java:241] [main] Processing chromosome C26262 Processing chromosome C26262 INFO [2014-03-08 06:24:23,052] [Preprocessor.java:241] [main] Processing chromosome C26268 Processing chromosome C26268 INFO [2014-03-08 06:24:23,103] [Preprocessor.java:241] [main] Processing chromosome C26276 Processing chromosome C26276 INFO [2014-03-08 06:24:23,132] [Preprocessor.java:241] [main] Processing chromosome C26278 Processing chromosome C26278 INFO [2014-03-08 06:24:23,137] [Preprocessor.java:241] [main] Processing chromosome C26292 Processing chromosome C26292 INFO [2014-03-08 06:24:23,194] [Preprocessor.java:241] [main] Processing chromosome C26302 Processing chromosome C26302 INFO [2014-03-08 06:24:23,199] [Preprocessor.java:241] [main] Processing chromosome C26306 Processing chromosome C26306 INFO [2014-03-08 06:24:23,236] [Preprocessor.java:241] [main] Processing chromosome C26312 Processing chromosome C26312 INFO [2014-03-08 06:24:23,252] [Preprocessor.java:241] [main] Processing chromosome C26318 Processing chromosome C26318 INFO [2014-03-08 06:24:23,275] [Preprocessor.java:241] [main] Processing chromosome C26320 Processing chromosome C26320 INFO [2014-03-08 06:24:23,291] [Preprocessor.java:241] [main] Processing chromosome C26336 Processing chromosome C26336 INFO [2014-03-08 06:24:23,306] [Preprocessor.java:241] [main] Processing chromosome C26338 Processing chromosome C26338 INFO [2014-03-08 06:24:23,311] [Preprocessor.java:241] [main] Processing chromosome C26342 Processing chromosome C26342 INFO [2014-03-08 06:24:23,336] [Preprocessor.java:241] [main] Processing chromosome C26344 Processing chromosome C26344 INFO [2014-03-08 06:24:23,340] [Preprocessor.java:241] [main] Processing chromosome C26352 Processing chromosome C26352 INFO [2014-03-08 06:24:23,343] [Preprocessor.java:241] [main] Processing chromosome C26354 Processing chromosome C26354 INFO [2014-03-08 06:24:23,363] [Preprocessor.java:241] [main] Processing chromosome C26356 Processing chromosome C26356 INFO [2014-03-08 06:24:23,366] [Preprocessor.java:241] [main] Processing chromosome C26370 Processing chromosome C26370 INFO [2014-03-08 06:24:23,374] [Preprocessor.java:241] [main] Processing chromosome C26372 Processing chromosome C26372 INFO [2014-03-08 06:24:23,381] [Preprocessor.java:241] [main] Processing chromosome C26374 Processing chromosome C26374 INFO [2014-03-08 06:24:23,391] [Preprocessor.java:241] [main] Processing chromosome C26384 Processing chromosome C26384 INFO [2014-03-08 06:24:23,409] [Preprocessor.java:241] [main] Processing chromosome C26390 Processing chromosome C26390 INFO [2014-03-08 06:24:23,450] [Preprocessor.java:241] [main] Processing chromosome C26394 Processing chromosome C26394 INFO [2014-03-08 06:24:23,456] [Preprocessor.java:241] [main] Processing chromosome C26402 Processing chromosome C26402 INFO [2014-03-08 06:24:23,478] [Preprocessor.java:241] [main] Processing chromosome C26416 Processing chromosome C26416 INFO [2014-03-08 06:24:23,489] [Preprocessor.java:241] [main] Processing chromosome C26422 Processing chromosome C26422 INFO [2014-03-08 06:24:23,505] [Preprocessor.java:241] [main] Processing chromosome C26426 Processing chromosome C26426 INFO [2014-03-08 06:24:23,519] [Preprocessor.java:241] [main] Processing chromosome C26430 Processing chromosome C26430 INFO [2014-03-08 06:24:23,537] [Preprocessor.java:241] [main] Processing chromosome C26440 Processing chromosome C26440 INFO [2014-03-08 06:24:23,551] [Preprocessor.java:241] [main] Processing chromosome C26448 Processing chromosome C26448 INFO [2014-03-08 06:24:23,570] [Preprocessor.java:241] [main] Processing chromosome C26452 Processing chromosome C26452 INFO [2014-03-08 06:24:23,594] [Preprocessor.java:241] [main] Processing chromosome C26454 Processing chromosome C26454 INFO [2014-03-08 06:24:23,649] [Preprocessor.java:241] [main] Processing chromosome C26458 Processing chromosome C26458 INFO [2014-03-08 06:24:23,668] [Preprocessor.java:241] [main] Processing chromosome C26460 Processing chromosome C26460 INFO [2014-03-08 06:24:23,687] [Preprocessor.java:241] [main] Processing chromosome C26466 Processing chromosome C26466 INFO [2014-03-08 06:24:23,719] [Preprocessor.java:241] [main] Processing chromosome C26468 Processing chromosome C26468 INFO [2014-03-08 06:24:23,722] [Preprocessor.java:241] [main] Processing chromosome C26472 Processing chromosome C26472 INFO [2014-03-08 06:24:23,735] [Preprocessor.java:241] [main] Processing chromosome C26474 Processing chromosome C26474 INFO [2014-03-08 06:24:23,748] [Preprocessor.java:241] [main] Processing chromosome C26482 Processing chromosome C26482 INFO [2014-03-08 06:24:23,760] [Preprocessor.java:241] [main] Processing chromosome C26486 Processing chromosome C26486 INFO [2014-03-08 06:24:23,789] [Preprocessor.java:241] [main] Processing chromosome C26492 Processing chromosome C26492 INFO [2014-03-08 06:24:23,812] [Preprocessor.java:241] [main] Processing chromosome C26500 Processing chromosome C26500 INFO [2014-03-08 06:24:23,849] [Preprocessor.java:241] [main] Processing chromosome C26506 Processing chromosome C26506 INFO [2014-03-08 06:24:23,913] [Preprocessor.java:241] [main] Processing chromosome C26508 Processing chromosome C26508 INFO [2014-03-08 06:24:23,965] [Preprocessor.java:241] [main] Processing chromosome C26516 Processing chromosome C26516 INFO [2014-03-08 06:24:24,023] [Preprocessor.java:241] [main] Processing chromosome C26518 Processing chromosome C26518 INFO [2014-03-08 06:24:24,033] [Preprocessor.java:241] [main] Processing chromosome C26522 Processing chromosome C26522 INFO [2014-03-08 06:24:24,081] [Preprocessor.java:241] [main] Processing chromosome C26526 Processing chromosome C26526 INFO [2014-03-08 06:24:24,112] [Preprocessor.java:241] [main] Processing chromosome C26532 Processing chromosome C26532 INFO [2014-03-08 06:24:24,144] [Preprocessor.java:241] [main] Processing chromosome C26534 Processing chromosome C26534 INFO [2014-03-08 06:24:24,182] [Preprocessor.java:241] [main] Processing chromosome C26536 Processing chromosome C26536 INFO [2014-03-08 06:24:24,273] [Preprocessor.java:241] [main] Processing chromosome C26550 Processing chromosome C26550 INFO [2014-03-08 06:24:24,288] [Preprocessor.java:241] [main] Processing chromosome C26552 Processing chromosome C26552 INFO [2014-03-08 06:24:24,295] [Preprocessor.java:241] [main] Processing chromosome C26556 Processing chromosome C26556 INFO [2014-03-08 06:24:24,301] [Preprocessor.java:241] [main] Processing chromosome C26562 Processing chromosome C26562 INFO [2014-03-08 06:24:24,336] [Preprocessor.java:241] [main] Processing chromosome C26566 Processing chromosome C26566 INFO [2014-03-08 06:24:24,359] [Preprocessor.java:241] [main] Processing chromosome C26568 Processing chromosome C26568 INFO [2014-03-08 06:24:24,401] [Preprocessor.java:241] [main] Processing chromosome C26570 Processing chromosome C26570 INFO [2014-03-08 06:24:24,420] [Preprocessor.java:241] [main] Processing chromosome C26574 Processing chromosome C26574 INFO [2014-03-08 06:24:24,424] [Preprocessor.java:241] [main] Processing chromosome C26578 Processing chromosome C26578 INFO [2014-03-08 06:24:24,475] [Preprocessor.java:241] [main] Processing chromosome C26582 Processing chromosome C26582 INFO [2014-03-08 06:24:24,519] [Preprocessor.java:241] [main] Processing chromosome C26584 Processing chromosome C26584 INFO [2014-03-08 06:24:24,588] [Preprocessor.java:241] [main] Processing chromosome C26602 Processing chromosome C26602 INFO [2014-03-08 06:24:24,608] [Preprocessor.java:241] [main] Processing chromosome C26606 Processing chromosome C26606 INFO [2014-03-08 06:24:24,612] [Preprocessor.java:241] [main] Processing chromosome C26612 Processing chromosome C26612 INFO [2014-03-08 06:24:24,639] [Preprocessor.java:241] [main] Processing chromosome C26614 Processing chromosome C26614 INFO [2014-03-08 06:24:24,670] [Preprocessor.java:241] [main] Processing chromosome C26620 Processing chromosome C26620 INFO [2014-03-08 06:24:24,675] [Preprocessor.java:241] [main] Processing chromosome C26624 Processing chromosome C26624 INFO [2014-03-08 06:24:24,692] [Preprocessor.java:241] [main] Processing chromosome C26628 Processing chromosome C26628 INFO [2014-03-08 06:24:24,700] [Preprocessor.java:241] [main] Processing chromosome C26640 Processing chromosome C26640 INFO [2014-03-08 06:24:24,718] [Preprocessor.java:241] [main] Processing chromosome C26646 Processing chromosome C26646 INFO [2014-03-08 06:24:24,734] [Preprocessor.java:241] [main] Processing chromosome C26654 Processing chromosome C26654 INFO [2014-03-08 06:24:24,772] [Preprocessor.java:241] [main] Processing chromosome C26660 Processing chromosome C26660 INFO [2014-03-08 06:24:24,778] [Preprocessor.java:241] [main] Processing chromosome C26666 Processing chromosome C26666 INFO [2014-03-08 06:24:24,793] [Preprocessor.java:241] [main] Processing chromosome C26674 Processing chromosome C26674 INFO [2014-03-08 06:24:24,839] [Preprocessor.java:241] [main] Processing chromosome C26684 Processing chromosome C26684 INFO [2014-03-08 06:24:24,868] [Preprocessor.java:241] [main] Processing chromosome C26688 Processing chromosome C26688 INFO [2014-03-08 06:24:24,896] [Preprocessor.java:241] [main] Processing chromosome C26692 Processing chromosome C26692 INFO [2014-03-08 06:24:24,909] [Preprocessor.java:241] [main] Processing chromosome C26708 Processing chromosome C26708 INFO [2014-03-08 06:24:24,923] [Preprocessor.java:241] [main] Processing chromosome C26712 Processing chromosome C26712 INFO [2014-03-08 06:24:24,954] [Preprocessor.java:241] [main] Processing chromosome C26722 Processing chromosome C26722 INFO [2014-03-08 06:24:24,970] [Preprocessor.java:241] [main] Processing chromosome C26726 Processing chromosome C26726 INFO [2014-03-08 06:24:24,983] [Preprocessor.java:241] [main] Processing chromosome C26728 Processing chromosome C26728 INFO [2014-03-08 06:24:24,996] [Preprocessor.java:241] [main] Processing chromosome C26738 Processing chromosome C26738 INFO [2014-03-08 06:24:25,024] [Preprocessor.java:241] [main] Processing chromosome C26740 Processing chromosome C26740 INFO [2014-03-08 06:24:25,058] [Preprocessor.java:241] [main] Processing chromosome C26742 Processing chromosome C26742 INFO [2014-03-08 06:24:25,102] [Preprocessor.java:241] [main] Processing chromosome C26762 Processing chromosome C26762 INFO [2014-03-08 06:24:25,123] [Preprocessor.java:241] [main] Processing chromosome C26774 Processing chromosome C26774 INFO [2014-03-08 06:24:25,127] [Preprocessor.java:241] [main] Processing chromosome C26784 Processing chromosome C26784 INFO [2014-03-08 06:24:25,129] [Preprocessor.java:241] [main] Processing chromosome C26812 Processing chromosome C26812 INFO [2014-03-08 06:24:25,173] [Preprocessor.java:241] [main] Processing chromosome C26820 Processing chromosome C26820 INFO [2014-03-08 06:24:25,229] [Preprocessor.java:241] [main] Processing chromosome C26824 Processing chromosome C26824 INFO [2014-03-08 06:24:25,257] [Preprocessor.java:241] [main] Processing chromosome C26828 Processing chromosome C26828 INFO [2014-03-08 06:24:25,268] [Preprocessor.java:241] [main] Processing chromosome C26838 Processing chromosome C26838 INFO [2014-03-08 06:24:25,302] [Preprocessor.java:241] [main] Processing chromosome C26844 Processing chromosome C26844 INFO [2014-03-08 06:24:25,341] [Preprocessor.java:241] [main] Processing chromosome C26852 Processing chromosome C26852 INFO [2014-03-08 06:24:25,355] [Preprocessor.java:241] [main] Processing chromosome C26862 Processing chromosome C26862 INFO [2014-03-08 06:24:25,380] [Preprocessor.java:241] [main] Processing chromosome C26866 Processing chromosome C26866 INFO [2014-03-08 06:24:25,414] [Preprocessor.java:241] [main] Processing chromosome C26872 Processing chromosome C26872 INFO [2014-03-08 06:24:25,435] [Preprocessor.java:241] [main] Processing chromosome C26878 Processing chromosome C26878 INFO [2014-03-08 06:24:25,442] [Preprocessor.java:241] [main] Processing chromosome C26888 Processing chromosome C26888 INFO [2014-03-08 06:24:25,459] [Preprocessor.java:241] [main] Processing chromosome C26890 Processing chromosome C26890 INFO [2014-03-08 06:24:25,486] [Preprocessor.java:241] [main] Processing chromosome C26900 Processing chromosome C26900 INFO [2014-03-08 06:24:25,493] [Preprocessor.java:241] [main] Processing chromosome C26918 Processing chromosome C26918 INFO [2014-03-08 06:24:25,507] [Preprocessor.java:241] [main] Processing chromosome C26920 Processing chromosome C26920 INFO [2014-03-08 06:24:25,516] [Preprocessor.java:241] [main] Processing chromosome C26932 Processing chromosome C26932 INFO [2014-03-08 06:24:25,539] [Preprocessor.java:241] [main] Processing chromosome C26934 Processing chromosome C26934 INFO [2014-03-08 06:24:25,563] [Preprocessor.java:241] [main] Processing chromosome C26936 Processing chromosome C26936 INFO [2014-03-08 06:24:25,650] [Preprocessor.java:241] [main] Processing chromosome C26938 Processing chromosome C26938 INFO [2014-03-08 06:24:25,714] [Preprocessor.java:241] [main] Processing chromosome C26942 Processing chromosome C26942 INFO [2014-03-08 06:24:25,771] [Preprocessor.java:241] [main] Processing chromosome C26948 Processing chromosome C26948 INFO [2014-03-08 06:24:25,795] [Preprocessor.java:241] [main] Processing chromosome C26958 Processing chromosome C26958 INFO [2014-03-08 06:24:25,804] [Preprocessor.java:241] [main] Processing chromosome C26960 Processing chromosome C26960 INFO [2014-03-08 06:24:25,815] [Preprocessor.java:241] [main] Processing chromosome C26966 Processing chromosome C26966 INFO [2014-03-08 06:24:25,906] [Preprocessor.java:241] [main] Processing chromosome C26976 Processing chromosome C26976 INFO [2014-03-08 06:24:25,944] [Preprocessor.java:241] [main] Processing chromosome C26978 Processing chromosome C26978 INFO [2014-03-08 06:24:25,955] [Preprocessor.java:241] [main] Processing chromosome C26982 Processing chromosome C26982 INFO [2014-03-08 06:24:25,975] [Preprocessor.java:241] [main] Processing chromosome C26986 Processing chromosome C26986 INFO [2014-03-08 06:24:25,978] [Preprocessor.java:241] [main] Processing chromosome C26992 Processing chromosome C26992 INFO [2014-03-08 06:24:26,003] [Preprocessor.java:241] [main] Processing chromosome C26998 Processing chromosome C26998 INFO [2014-03-08 06:24:26,009] [Preprocessor.java:241] [main] Processing chromosome C27 Processing chromosome C27 INFO [2014-03-08 06:24:26,048] [Preprocessor.java:241] [main] Processing chromosome C2701 Processing chromosome C2701 INFO [2014-03-08 06:24:26,111] [Preprocessor.java:241] [main] Processing chromosome C27016 Processing chromosome C27016 INFO [2014-03-08 06:24:26,190] [Preprocessor.java:241] [main] Processing chromosome C27020 Processing chromosome C27020 INFO [2014-03-08 06:24:26,211] [Preprocessor.java:241] [main] Processing chromosome C27026 Processing chromosome C27026 INFO [2014-03-08 06:24:26,230] [Preprocessor.java:241] [main] Processing chromosome C27038 Processing chromosome C27038 INFO [2014-03-08 06:24:26,244] [Preprocessor.java:241] [main] Processing chromosome C27052 Processing chromosome C27052 INFO [2014-03-08 06:24:26,247] [Preprocessor.java:241] [main] Processing chromosome C27054 Processing chromosome C27054 INFO [2014-03-08 06:24:26,258] [Preprocessor.java:241] [main] Processing chromosome C27058 Processing chromosome C27058 INFO [2014-03-08 06:24:26,261] [Preprocessor.java:241] [main] Processing chromosome C27066 Processing chromosome C27066 INFO [2014-03-08 06:24:26,290] [Preprocessor.java:241] [main] Processing chromosome C27086 Processing chromosome C27086 INFO [2014-03-08 06:24:26,302] [Preprocessor.java:241] [main] Processing chromosome C27092 Processing chromosome C27092 INFO [2014-03-08 06:24:26,311] [Preprocessor.java:241] [main] Processing chromosome C27100 Processing chromosome C27100 INFO [2014-03-08 06:24:26,318] [Preprocessor.java:241] [main] Processing chromosome C27102 Processing chromosome C27102 INFO [2014-03-08 06:24:26,321] [Preprocessor.java:241] [main] Processing chromosome C27106 Processing chromosome C27106 INFO [2014-03-08 06:24:26,336] [Preprocessor.java:241] [main] Processing chromosome C27116 Processing chromosome C27116 INFO [2014-03-08 06:24:26,363] [Preprocessor.java:241] [main] Processing chromosome C27118 Processing chromosome C27118 INFO [2014-03-08 06:24:26,381] [Preprocessor.java:241] [main] Processing chromosome C27132 Processing chromosome C27132 INFO [2014-03-08 06:24:26,400] [Preprocessor.java:241] [main] Processing chromosome C27154 Processing chromosome C27154 INFO [2014-03-08 06:24:26,415] [Preprocessor.java:241] [main] Processing chromosome C27158 Processing chromosome C27158 INFO [2014-03-08 06:24:26,425] [Preprocessor.java:241] [main] Processing chromosome C27160 Processing chromosome C27160 INFO [2014-03-08 06:24:26,438] [Preprocessor.java:241] [main] Processing chromosome C27162 Processing chromosome C27162 INFO [2014-03-08 06:24:26,466] [Preprocessor.java:241] [main] Processing chromosome C27168 Processing chromosome C27168 INFO [2014-03-08 06:24:26,510] [Preprocessor.java:241] [main] Processing chromosome C27176 Processing chromosome C27176 INFO [2014-03-08 06:24:26,535] [Preprocessor.java:241] [main] Processing chromosome C27178 Processing chromosome C27178 INFO [2014-03-08 06:24:26,554] [Preprocessor.java:241] [main] Processing chromosome C27196 Processing chromosome C27196 INFO [2014-03-08 06:24:26,562] [Preprocessor.java:241] [main] Processing chromosome C27210 Processing chromosome C27210 INFO [2014-03-08 06:24:26,579] [Preprocessor.java:241] [main] Processing chromosome C27218 Processing chromosome C27218 INFO [2014-03-08 06:24:26,618] [Preprocessor.java:241] [main] Processing chromosome C27230 Processing chromosome C27230 INFO [2014-03-08 06:24:26,638] [Preprocessor.java:241] [main] Processing chromosome C27242 Processing chromosome C27242 INFO [2014-03-08 06:24:26,672] [Preprocessor.java:241] [main] Processing chromosome C27244 Processing chromosome C27244 INFO [2014-03-08 06:24:26,691] [Preprocessor.java:241] [main] Processing chromosome C27258 Processing chromosome C27258 INFO [2014-03-08 06:24:26,696] [Preprocessor.java:241] [main] Processing chromosome C27268 Processing chromosome C27268 INFO [2014-03-08 06:24:26,706] [Preprocessor.java:241] [main] Processing chromosome C2727 Processing chromosome C2727 INFO [2014-03-08 06:24:26,744] [Preprocessor.java:241] [main] Processing chromosome C27272 Processing chromosome C27272 INFO [2014-03-08 06:24:26,772] [Preprocessor.java:241] [main] Processing chromosome C27276 Processing chromosome C27276 INFO [2014-03-08 06:24:26,803] [Preprocessor.java:241] [main] Processing chromosome C27282 Processing chromosome C27282 INFO [2014-03-08 06:24:26,821] [Preprocessor.java:241] [main] Processing chromosome C27284 Processing chromosome C27284 INFO [2014-03-08 06:24:26,849] [Preprocessor.java:241] [main] Processing chromosome C27296 Processing chromosome C27296 INFO [2014-03-08 06:24:26,858] [Preprocessor.java:241] [main] Processing chromosome C27304 Processing chromosome C27304 INFO [2014-03-08 06:24:26,871] [Preprocessor.java:241] [main] Processing chromosome C27310 Processing chromosome C27310 INFO [2014-03-08 06:24:26,896] [Preprocessor.java:241] [main] Processing chromosome C27314 Processing chromosome C27314 INFO [2014-03-08 06:24:26,918] [Preprocessor.java:241] [main] Processing chromosome C27320 Processing chromosome C27320 INFO [2014-03-08 06:24:26,927] [Preprocessor.java:241] [main] Processing chromosome C27342 Processing chromosome C27342 INFO [2014-03-08 06:24:26,943] [Preprocessor.java:241] [main] Processing chromosome C27356 Processing chromosome C27356 INFO [2014-03-08 06:24:26,959] [Preprocessor.java:241] [main] Processing chromosome C27358 Processing chromosome C27358 INFO [2014-03-08 06:24:26,966] [Preprocessor.java:241] [main] Processing chromosome C27360 Processing chromosome C27360 INFO [2014-03-08 06:24:26,996] [Preprocessor.java:241] [main] Processing chromosome C27364 Processing chromosome C27364 INFO [2014-03-08 06:24:27,014] [Preprocessor.java:241] [main] Processing chromosome C2737 Processing chromosome C2737 INFO [2014-03-08 06:24:27,063] [Preprocessor.java:241] [main] Processing chromosome C27378 Processing chromosome C27378 INFO [2014-03-08 06:24:27,099] [Preprocessor.java:241] [main] Processing chromosome C27386 Processing chromosome C27386 INFO [2014-03-08 06:24:27,128] [Preprocessor.java:241] [main] Processing chromosome C27394 Processing chromosome C27394 INFO [2014-03-08 06:24:27,154] [Preprocessor.java:241] [main] Processing chromosome C27400 Processing chromosome C27400 INFO [2014-03-08 06:24:27,163] [Preprocessor.java:241] [main] Processing chromosome C27410 Processing chromosome C27410 INFO [2014-03-08 06:24:27,195] [Preprocessor.java:241] [main] Processing chromosome C27412 Processing chromosome C27412 INFO [2014-03-08 06:24:27,217] [Preprocessor.java:241] [main] Processing chromosome C27428 Processing chromosome C27428 INFO [2014-03-08 06:24:27,230] [Preprocessor.java:241] [main] Processing chromosome C2743 Processing chromosome C2743 INFO [2014-03-08 06:24:27,268] [Preprocessor.java:241] [main] Processing chromosome C27432 Processing chromosome C27432 INFO [2014-03-08 06:24:27,299] [Preprocessor.java:241] [main] Processing chromosome C27444 Processing chromosome C27444 INFO [2014-03-08 06:24:27,319] [Preprocessor.java:241] [main] Processing chromosome C27446 Processing chromosome C27446 INFO [2014-03-08 06:24:27,335] [Preprocessor.java:241] [main] Processing chromosome C27452 Processing chromosome C27452 INFO [2014-03-08 06:24:27,368] [Preprocessor.java:241] [main] Processing chromosome C27460 Processing chromosome C27460 INFO [2014-03-08 06:24:27,373] [Preprocessor.java:241] [main] Processing chromosome C27462 Processing chromosome C27462 INFO [2014-03-08 06:24:27,383] [Preprocessor.java:241] [main] Processing chromosome C27478 Processing chromosome C27478 INFO [2014-03-08 06:24:27,404] [Preprocessor.java:241] [main] Processing chromosome C27480 Processing chromosome C27480 INFO [2014-03-08 06:24:27,430] [Preprocessor.java:241] [main] Processing chromosome C27482 Processing chromosome C27482 INFO [2014-03-08 06:24:27,433] [Preprocessor.java:241] [main] Processing chromosome C27498 Processing chromosome C27498 INFO [2014-03-08 06:24:27,453] [Preprocessor.java:241] [main] Processing chromosome C27500 Processing chromosome C27500 INFO [2014-03-08 06:24:27,486] [Preprocessor.java:241] [main] Processing chromosome C27510 Processing chromosome C27510 INFO [2014-03-08 06:24:27,496] [Preprocessor.java:241] [main] Processing chromosome C27526 Processing chromosome C27526 INFO [2014-03-08 06:24:27,509] [Preprocessor.java:241] [main] Processing chromosome C27530 Processing chromosome C27530 INFO [2014-03-08 06:24:27,536] [Preprocessor.java:241] [main] Processing chromosome C27552 Processing chromosome C27552 INFO [2014-03-08 06:24:27,545] [Preprocessor.java:241] [main] Processing chromosome C27556 Processing chromosome C27556 INFO [2014-03-08 06:24:27,556] [Preprocessor.java:241] [main] Processing chromosome C27558 Processing chromosome C27558 INFO [2014-03-08 06:24:27,564] [Preprocessor.java:241] [main] Processing chromosome C27566 Processing chromosome C27566 INFO [2014-03-08 06:24:27,599] [Preprocessor.java:241] [main] Processing chromosome C27570 Processing chromosome C27570 INFO [2014-03-08 06:24:27,618] [Preprocessor.java:241] [main] Processing chromosome C27578 Processing chromosome C27578 INFO [2014-03-08 06:24:27,626] [Preprocessor.java:241] [main] Processing chromosome C27580 Processing chromosome C27580 INFO [2014-03-08 06:24:27,628] [Preprocessor.java:241] [main] Processing chromosome C2761 Processing chromosome C2761 INFO [2014-03-08 06:24:27,694] [Preprocessor.java:241] [main] Processing chromosome C27612 Processing chromosome C27612 INFO [2014-03-08 06:24:27,726] [Preprocessor.java:241] [main] Processing chromosome C27614 Processing chromosome C27614 INFO [2014-03-08 06:24:27,739] [Preprocessor.java:241] [main] Processing chromosome C27630 Processing chromosome C27630 INFO [2014-03-08 06:24:27,757] [Preprocessor.java:241] [main] Processing chromosome C27638 Processing chromosome C27638 INFO [2014-03-08 06:24:27,773] [Preprocessor.java:241] [main] Processing chromosome C27640 Processing chromosome C27640 INFO [2014-03-08 06:24:27,785] [Preprocessor.java:241] [main] Processing chromosome C27644 Processing chromosome C27644 INFO [2014-03-08 06:24:27,832] [Preprocessor.java:241] [main] Processing chromosome C2765 Processing chromosome C2765 INFO [2014-03-08 06:24:27,902] [Preprocessor.java:241] [main] Processing chromosome C27668 Processing chromosome C27668 INFO [2014-03-08 06:24:27,927] [Preprocessor.java:241] [main] Processing chromosome C27688 Processing chromosome C27688 INFO [2014-03-08 06:24:27,956] [Preprocessor.java:241] [main] Processing chromosome C27692 Processing chromosome C27692 INFO [2014-03-08 06:24:27,965] [Preprocessor.java:241] [main] Processing chromosome C27694 Processing chromosome C27694 INFO [2014-03-08 06:24:27,982] [Preprocessor.java:241] [main] Processing chromosome C27696 Processing chromosome C27696 INFO [2014-03-08 06:24:27,998] [Preprocessor.java:241] [main] Processing chromosome C27698 Processing chromosome C27698 INFO [2014-03-08 06:24:28,041] [Preprocessor.java:241] [main] Processing chromosome C27700 Processing chromosome C27700 INFO [2014-03-08 06:24:28,055] [Preprocessor.java:241] [main] Processing chromosome C27706 Processing chromosome C27706 INFO [2014-03-08 06:24:28,065] [Preprocessor.java:241] [main] Processing chromosome C27712 Processing chromosome C27712 INFO [2014-03-08 06:24:28,091] [Preprocessor.java:241] [main] Processing chromosome C27718 Processing chromosome C27718 INFO [2014-03-08 06:24:28,133] [Preprocessor.java:241] [main] Processing chromosome C27722 Processing chromosome C27722 INFO [2014-03-08 06:24:28,140] [Preprocessor.java:241] [main] Processing chromosome C27726 Processing chromosome C27726 INFO [2014-03-08 06:24:28,146] [Preprocessor.java:241] [main] Processing chromosome C27732 Processing chromosome C27732 INFO [2014-03-08 06:24:28,149] [Preprocessor.java:241] [main] Processing chromosome C27742 Processing chromosome C27742 INFO [2014-03-08 06:24:28,168] [Preprocessor.java:241] [main] Processing chromosome C27746 Processing chromosome C27746 INFO [2014-03-08 06:24:28,196] [Preprocessor.java:241] [main] Processing chromosome C27748 Processing chromosome C27748 INFO [2014-03-08 06:24:28,200] [Preprocessor.java:241] [main] Processing chromosome C27754 Processing chromosome C27754 INFO [2014-03-08 06:24:28,214] [Preprocessor.java:241] [main] Processing chromosome C27762 Processing chromosome C27762 INFO [2014-03-08 06:24:28,232] [Preprocessor.java:241] [main] Processing chromosome C27770 Processing chromosome C27770 INFO [2014-03-08 06:24:28,259] [Preprocessor.java:241] [main] Processing chromosome C27778 Processing chromosome C27778 INFO [2014-03-08 06:24:28,264] [Preprocessor.java:241] [main] Processing chromosome C27784 Processing chromosome C27784 INFO [2014-03-08 06:24:28,302] [Preprocessor.java:241] [main] Processing chromosome C27792 Processing chromosome C27792 INFO [2014-03-08 06:24:28,313] [Preprocessor.java:241] [main] Processing chromosome C27794 Processing chromosome C27794 INFO [2014-03-08 06:24:28,317] [Preprocessor.java:241] [main] Processing chromosome C27812 Processing chromosome C27812 INFO [2014-03-08 06:24:28,359] [Preprocessor.java:241] [main] Processing chromosome C27816 Processing chromosome C27816 INFO [2014-03-08 06:24:28,369] [Preprocessor.java:241] [main] Processing chromosome C27830 Processing chromosome C27830 INFO [2014-03-08 06:24:28,375] [Preprocessor.java:241] [main] Processing chromosome C27836 Processing chromosome C27836 INFO [2014-03-08 06:24:28,382] [Preprocessor.java:241] [main] Processing chromosome C27850 Processing chromosome C27850 INFO [2014-03-08 06:24:28,395] [Preprocessor.java:241] [main] Processing chromosome C27874 Processing chromosome C27874 INFO [2014-03-08 06:24:28,428] [Preprocessor.java:241] [main] Processing chromosome C27882 Processing chromosome C27882 INFO [2014-03-08 06:24:28,437] [Preprocessor.java:241] [main] Processing chromosome C2789 Processing chromosome C2789 INFO [2014-03-08 06:24:28,500] [Preprocessor.java:241] [main] Processing chromosome C27902 Processing chromosome C27902 INFO [2014-03-08 06:24:28,503] [Preprocessor.java:241] [main] Processing chromosome C27928 Processing chromosome C27928 INFO [2014-03-08 06:24:28,511] [Preprocessor.java:241] [main] Processing chromosome C2793 Processing chromosome C2793 INFO [2014-03-08 06:24:28,548] [Preprocessor.java:241] [main] Processing chromosome C27944 Processing chromosome C27944 INFO [2014-03-08 06:24:28,597] [Preprocessor.java:241] [main] Processing chromosome C27954 Processing chromosome C27954 INFO [2014-03-08 06:24:28,619] [Preprocessor.java:241] [main] Processing chromosome C27962 Processing chromosome C27962 INFO [2014-03-08 06:24:28,640] [Preprocessor.java:241] [main] Processing chromosome C27964 Processing chromosome C27964 INFO [2014-03-08 06:24:28,657] [Preprocessor.java:241] [main] Processing chromosome C27966 Processing chromosome C27966 INFO [2014-03-08 06:24:28,666] [Preprocessor.java:241] [main] Processing chromosome C27984 Processing chromosome C27984 INFO [2014-03-08 06:24:28,670] [Preprocessor.java:241] [main] Processing chromosome C28002 Processing chromosome C28002 INFO [2014-03-08 06:24:28,682] [Preprocessor.java:241] [main] Processing chromosome C28004 Processing chromosome C28004 INFO [2014-03-08 06:24:28,707] [Preprocessor.java:241] [main] Processing chromosome C28006 Processing chromosome C28006 INFO [2014-03-08 06:24:28,719] [Preprocessor.java:241] [main] Processing chromosome C28016 Processing chromosome C28016 INFO [2014-03-08 06:24:28,739] [Preprocessor.java:241] [main] Processing chromosome C28026 Processing chromosome C28026 INFO [2014-03-08 06:24:28,747] [Preprocessor.java:241] [main] Processing chromosome C28030 Processing chromosome C28030 INFO [2014-03-08 06:24:28,755] [Preprocessor.java:241] [main] Processing chromosome C28036 Processing chromosome C28036 INFO [2014-03-08 06:24:28,776] [Preprocessor.java:241] [main] Processing chromosome C28044 Processing chromosome C28044 INFO [2014-03-08 06:24:28,811] [Preprocessor.java:241] [main] Processing chromosome C28062 Processing chromosome C28062 INFO [2014-03-08 06:24:28,824] [Preprocessor.java:241] [main] Processing chromosome C28064 Processing chromosome C28064 INFO [2014-03-08 06:24:28,886] [Preprocessor.java:241] [main] Processing chromosome C28070 Processing chromosome C28070 INFO [2014-03-08 06:24:28,924] [Preprocessor.java:241] [main] Processing chromosome C28076 Processing chromosome C28076 INFO [2014-03-08 06:24:28,943] [Preprocessor.java:241] [main] Processing chromosome C28082 Processing chromosome C28082 INFO [2014-03-08 06:24:28,969] [Preprocessor.java:241] [main] Processing chromosome C28090 Processing chromosome C28090 INFO [2014-03-08 06:24:29,009] [Preprocessor.java:241] [main] Processing chromosome C28108 Processing chromosome C28108 INFO [2014-03-08 06:24:29,021] [Preprocessor.java:241] [main] Processing chromosome C28120 Processing chromosome C28120 INFO [2014-03-08 06:24:29,032] [Preprocessor.java:241] [main] Processing chromosome C28132 Processing chromosome C28132 INFO [2014-03-08 06:24:29,045] [Preprocessor.java:241] [main] Processing chromosome C28144 Processing chromosome C28144 INFO [2014-03-08 06:24:29,073] [Preprocessor.java:241] [main] Processing chromosome C28150 Processing chromosome C28150 INFO [2014-03-08 06:24:29,080] [Preprocessor.java:241] [main] Processing chromosome C28152 Processing chromosome C28152 INFO [2014-03-08 06:24:29,087] [Preprocessor.java:241] [main] Processing chromosome C28168 Processing chromosome C28168 INFO [2014-03-08 06:24:29,105] [Preprocessor.java:241] [main] Processing chromosome C28170 Processing chromosome C28170 INFO [2014-03-08 06:24:29,133] [Preprocessor.java:241] [main] Processing chromosome C28184 Processing chromosome C28184 INFO [2014-03-08 06:24:29,157] [Preprocessor.java:241] [main] Processing chromosome C28190 Processing chromosome C28190 INFO [2014-03-08 06:24:29,197] [Preprocessor.java:241] [main] Processing chromosome C28194 Processing chromosome C28194 INFO [2014-03-08 06:24:29,207] [Preprocessor.java:241] [main] Processing chromosome C28206 Processing chromosome C28206 INFO [2014-03-08 06:24:29,226] [Preprocessor.java:241] [main] Processing chromosome C28216 Processing chromosome C28216 INFO [2014-03-08 06:24:29,238] [Preprocessor.java:241] [main] Processing chromosome C28218 Processing chromosome C28218 INFO [2014-03-08 06:24:29,269] [Preprocessor.java:241] [main] Processing chromosome C28224 Processing chromosome C28224 INFO [2014-03-08 06:24:29,282] [Preprocessor.java:241] [main] Processing chromosome C28230 Processing chromosome C28230 INFO [2014-03-08 06:24:29,316] [Preprocessor.java:241] [main] Processing chromosome C28242 Processing chromosome C28242 INFO [2014-03-08 06:24:29,349] [Preprocessor.java:241] [main] Processing chromosome C28246 Processing chromosome C28246 INFO [2014-03-08 06:24:29,380] [Preprocessor.java:241] [main] Processing chromosome C28254 Processing chromosome C28254 INFO [2014-03-08 06:24:29,420] [Preprocessor.java:241] [main] Processing chromosome C28256 Processing chromosome C28256 INFO [2014-03-08 06:24:29,433] [Preprocessor.java:241] [main] Processing chromosome C28258 Processing chromosome C28258 INFO [2014-03-08 06:24:29,465] [Preprocessor.java:241] [main] Processing chromosome C28260 Processing chromosome C28260 INFO [2014-03-08 06:24:29,494] [Preprocessor.java:241] [main] Processing chromosome C28272 Processing chromosome C28272 INFO [2014-03-08 06:24:29,519] [Preprocessor.java:241] [main] Processing chromosome C28276 Processing chromosome C28276 INFO [2014-03-08 06:24:29,522] [Preprocessor.java:241] [main] Processing chromosome C28282 Processing chromosome C28282 INFO [2014-03-08 06:24:29,538] [Preprocessor.java:241] [main] Processing chromosome C28286 Processing chromosome C28286 INFO [2014-03-08 06:24:29,558] [Preprocessor.java:241] [main] Processing chromosome C28296 Processing chromosome C28296 INFO [2014-03-08 06:24:29,583] [Preprocessor.java:241] [main] Processing chromosome C28298 Processing chromosome C28298 INFO [2014-03-08 06:24:29,600] [Preprocessor.java:241] [main] Processing chromosome C28306 Processing chromosome C28306 INFO [2014-03-08 06:24:29,633] [Preprocessor.java:241] [main] Processing chromosome C28310 Processing chromosome C28310 INFO [2014-03-08 06:24:29,644] [Preprocessor.java:241] [main] Processing chromosome C28316 Processing chromosome C28316 INFO [2014-03-08 06:24:29,647] [Preprocessor.java:241] [main] Processing chromosome C28328 Processing chromosome C28328 INFO [2014-03-08 06:24:29,656] [Preprocessor.java:241] [main] Processing chromosome C28340 Processing chromosome C28340 INFO [2014-03-08 06:24:29,673] [Preprocessor.java:241] [main] Processing chromosome C28348 Processing chromosome C28348 INFO [2014-03-08 06:24:29,707] [Preprocessor.java:241] [main] Processing chromosome C28350 Processing chromosome C28350 INFO [2014-03-08 06:24:29,719] [Preprocessor.java:241] [main] Processing chromosome C28358 Processing chromosome C28358 INFO [2014-03-08 06:24:29,721] [Preprocessor.java:241] [main] Processing chromosome C28362 Processing chromosome C28362 INFO [2014-03-08 06:24:29,748] [Preprocessor.java:241] [main] Processing chromosome C28364 Processing chromosome C28364 INFO [2014-03-08 06:24:29,759] [Preprocessor.java:241] [main] Processing chromosome C28366 Processing chromosome C28366 INFO [2014-03-08 06:24:29,766] [Preprocessor.java:241] [main] Processing chromosome C28382 Processing chromosome C28382 INFO [2014-03-08 06:24:29,777] [Preprocessor.java:241] [main] Processing chromosome C28398 Processing chromosome C28398 INFO [2014-03-08 06:24:29,840] [Preprocessor.java:241] [main] Processing chromosome C28408 Processing chromosome C28408 INFO [2014-03-08 06:24:29,859] [Preprocessor.java:241] [main] Processing chromosome C28414 Processing chromosome C28414 INFO [2014-03-08 06:24:29,878] [Preprocessor.java:241] [main] Processing chromosome C28420 Processing chromosome C28420 INFO [2014-03-08 06:24:29,889] [Preprocessor.java:241] [main] Processing chromosome C28426 Processing chromosome C28426 INFO [2014-03-08 06:24:29,927] [Preprocessor.java:241] [main] Processing chromosome C28430 Processing chromosome C28430 INFO [2014-03-08 06:24:29,961] [Preprocessor.java:241] [main] Processing chromosome C28432 Processing chromosome C28432 INFO [2014-03-08 06:24:29,976] [Preprocessor.java:241] [main] Processing chromosome C28444 Processing chromosome C28444 INFO [2014-03-08 06:24:29,997] [Preprocessor.java:241] [main] Processing chromosome C28450 Processing chromosome C28450 INFO [2014-03-08 06:24:30,003] [Preprocessor.java:241] [main] Processing chromosome C28454 Processing chromosome C28454 INFO [2014-03-08 06:24:30,039] [Preprocessor.java:241] [main] Processing chromosome C28462 Processing chromosome C28462 INFO [2014-03-08 06:24:30,066] [Preprocessor.java:241] [main] Processing chromosome C28468 Processing chromosome C28468 INFO [2014-03-08 06:24:30,097] [Preprocessor.java:241] [main] Processing chromosome C28470 Processing chromosome C28470 INFO [2014-03-08 06:24:30,103] [Preprocessor.java:241] [main] Processing chromosome C28472 Processing chromosome C28472 INFO [2014-03-08 06:24:30,129] [Preprocessor.java:241] [main] Processing chromosome C28476 Processing chromosome C28476 INFO [2014-03-08 06:24:30,134] [Preprocessor.java:241] [main] Processing chromosome C28486 Processing chromosome C28486 INFO [2014-03-08 06:24:30,141] [Preprocessor.java:241] [main] Processing chromosome C28498 Processing chromosome C28498 INFO [2014-03-08 06:24:30,169] [Preprocessor.java:241] [main] Processing chromosome C28502 Processing chromosome C28502 INFO [2014-03-08 06:24:30,176] [Preprocessor.java:241] [main] Processing chromosome C28506 Processing chromosome C28506 INFO [2014-03-08 06:24:30,192] [Preprocessor.java:241] [main] Processing chromosome C28510 Processing chromosome C28510 INFO [2014-03-08 06:24:30,203] [Preprocessor.java:241] [main] Processing chromosome C28512 Processing chromosome C28512 INFO [2014-03-08 06:24:30,230] [Preprocessor.java:241] [main] Processing chromosome C28514 Processing chromosome C28514 INFO [2014-03-08 06:24:30,277] [Preprocessor.java:241] [main] Processing chromosome C28522 Processing chromosome C28522 INFO [2014-03-08 06:24:30,296] [Preprocessor.java:241] [main] Processing chromosome C28526 Processing chromosome C28526 INFO [2014-03-08 06:24:30,314] [Preprocessor.java:241] [main] Processing chromosome C28534 Processing chromosome C28534 INFO [2014-03-08 06:24:30,351] [Preprocessor.java:241] [main] Processing chromosome C28536 Processing chromosome C28536 INFO [2014-03-08 06:24:30,416] [Preprocessor.java:241] [main] Processing chromosome C28540 Processing chromosome C28540 INFO [2014-03-08 06:24:30,442] [Preprocessor.java:241] [main] Processing chromosome C28542 Processing chromosome C28542 INFO [2014-03-08 06:24:30,444] [Preprocessor.java:241] [main] Processing chromosome C28544 Processing chromosome C28544 INFO [2014-03-08 06:24:30,486] [Preprocessor.java:241] [main] Processing chromosome C28546 Processing chromosome C28546 INFO [2014-03-08 06:24:30,506] [Preprocessor.java:241] [main] Processing chromosome C28550 Processing chromosome C28550 INFO [2014-03-08 06:24:30,515] [Preprocessor.java:241] [main] Processing chromosome C28554 Processing chromosome C28554 INFO [2014-03-08 06:24:30,524] [Preprocessor.java:241] [main] Processing chromosome C28574 Processing chromosome C28574 INFO [2014-03-08 06:24:30,528] [Preprocessor.java:241] [main] Processing chromosome C28582 Processing chromosome C28582 INFO [2014-03-08 06:24:30,535] [Preprocessor.java:241] [main] Processing chromosome C28588 Processing chromosome C28588 INFO [2014-03-08 06:24:30,548] [Preprocessor.java:241] [main] Processing chromosome C28592 Processing chromosome C28592 INFO [2014-03-08 06:24:30,569] [Preprocessor.java:241] [main] Processing chromosome C28594 Processing chromosome C28594 INFO [2014-03-08 06:24:30,590] [Preprocessor.java:241] [main] Processing chromosome C28602 Processing chromosome C28602 INFO [2014-03-08 06:24:30,602] [Preprocessor.java:241] [main] Processing chromosome C28618 Processing chromosome C28618 INFO [2014-03-08 06:24:30,618] [Preprocessor.java:241] [main] Processing chromosome C28622 Processing chromosome C28622 INFO [2014-03-08 06:24:30,656] [Preprocessor.java:241] [main] Processing chromosome C28626 Processing chromosome C28626 INFO [2014-03-08 06:24:30,678] [Preprocessor.java:241] [main] Processing chromosome C28628 Processing chromosome C28628 INFO [2014-03-08 06:24:30,692] [Preprocessor.java:241] [main] Processing chromosome C28632 Processing chromosome C28632 INFO [2014-03-08 06:24:30,706] [Preprocessor.java:241] [main] Processing chromosome C28644 Processing chromosome C28644 INFO [2014-03-08 06:24:30,730] [Preprocessor.java:241] [main] Processing chromosome C28652 Processing chromosome C28652 INFO [2014-03-08 06:24:30,746] [Preprocessor.java:241] [main] Processing chromosome C28654 Processing chromosome C28654 INFO [2014-03-08 06:24:30,756] [Preprocessor.java:241] [main] Processing chromosome C28656 Processing chromosome C28656 INFO [2014-03-08 06:24:30,782] [Preprocessor.java:241] [main] Processing chromosome C28666 Processing chromosome C28666 INFO [2014-03-08 06:24:30,809] [Preprocessor.java:241] [main] Processing chromosome C28678 Processing chromosome C28678 INFO [2014-03-08 06:24:30,846] [Preprocessor.java:241] [main] Processing chromosome C28684 Processing chromosome C28684 INFO [2014-03-08 06:24:30,869] [Preprocessor.java:241] [main] Processing chromosome C28702 Processing chromosome C28702 INFO [2014-03-08 06:24:30,877] [Preprocessor.java:241] [main] Processing chromosome C28704 Processing chromosome C28704 INFO [2014-03-08 06:24:30,893] [Preprocessor.java:241] [main] Processing chromosome C28708 Processing chromosome C28708 INFO [2014-03-08 06:24:30,933] [Preprocessor.java:241] [main] Processing chromosome C28716 Processing chromosome C28716 INFO [2014-03-08 06:24:30,950] [Preprocessor.java:241] [main] Processing chromosome C28718 Processing chromosome C28718 INFO [2014-03-08 06:24:30,964] [Preprocessor.java:241] [main] Processing chromosome C28722 Processing chromosome C28722 INFO [2014-03-08 06:24:30,988] [Preprocessor.java:241] [main] Processing chromosome C28726 Processing chromosome C28726 INFO [2014-03-08 06:24:31,003] [Preprocessor.java:241] [main] Processing chromosome C28728 Processing chromosome C28728 INFO [2014-03-08 06:24:31,014] [Preprocessor.java:241] [main] Processing chromosome C28732 Processing chromosome C28732 INFO [2014-03-08 06:24:31,032] [Preprocessor.java:241] [main] Processing chromosome C28734 Processing chromosome C28734 INFO [2014-03-08 06:24:31,042] [Preprocessor.java:241] [main] Processing chromosome C28736 Processing chromosome C28736 INFO [2014-03-08 06:24:31,092] [Preprocessor.java:241] [main] Processing chromosome C28748 Processing chromosome C28748 INFO [2014-03-08 06:24:31,098] [Preprocessor.java:241] [main] Processing chromosome C28752 Processing chromosome C28752 INFO [2014-03-08 06:24:31,116] [Preprocessor.java:241] [main] Processing chromosome C28760 Processing chromosome C28760 INFO [2014-03-08 06:24:31,153] [Preprocessor.java:241] [main] Processing chromosome C28766 Processing chromosome C28766 INFO [2014-03-08 06:24:31,189] [Preprocessor.java:241] [main] Processing chromosome C2877 Processing chromosome C2877 INFO [2014-03-08 06:24:31,229] [Preprocessor.java:241] [main] Processing chromosome C28772 Processing chromosome C28772 INFO [2014-03-08 06:24:31,272] [Preprocessor.java:241] [main] Processing chromosome C28784 Processing chromosome C28784 INFO [2014-03-08 06:24:31,275] [Preprocessor.java:241] [main] Processing chromosome C28800 Processing chromosome C28800 INFO [2014-03-08 06:24:31,294] [Preprocessor.java:241] [main] Processing chromosome C28802 Processing chromosome C28802 INFO [2014-03-08 06:24:31,316] [Preprocessor.java:241] [main] Processing chromosome C28806 Processing chromosome C28806 INFO [2014-03-08 06:24:31,337] [Preprocessor.java:241] [main] Processing chromosome C28808 Processing chromosome C28808 INFO [2014-03-08 06:24:31,345] [Preprocessor.java:241] [main] Processing chromosome C28816 Processing chromosome C28816 INFO [2014-03-08 06:24:31,369] [Preprocessor.java:241] [main] Processing chromosome C28830 Processing chromosome C28830 INFO [2014-03-08 06:24:31,378] [Preprocessor.java:241] [main] Processing chromosome C28836 Processing chromosome C28836 INFO [2014-03-08 06:24:31,397] [Preprocessor.java:241] [main] Processing chromosome C28838 Processing chromosome C28838 INFO [2014-03-08 06:24:31,424] [Preprocessor.java:241] [main] Processing chromosome C28840 Processing chromosome C28840 INFO [2014-03-08 06:24:31,436] [Preprocessor.java:241] [main] Processing chromosome C28846 Processing chromosome C28846 INFO [2014-03-08 06:24:31,459] [Preprocessor.java:241] [main] Processing chromosome C28850 Processing chromosome C28850 INFO [2014-03-08 06:24:31,478] [Preprocessor.java:241] [main] Processing chromosome C28852 Processing chromosome C28852 INFO [2014-03-08 06:24:31,494] [Preprocessor.java:241] [main] Processing chromosome C28858 Processing chromosome C28858 INFO [2014-03-08 06:24:31,502] [Preprocessor.java:241] [main] Processing chromosome C28864 Processing chromosome C28864 INFO [2014-03-08 06:24:31,513] [Preprocessor.java:241] [main] Processing chromosome C28876 Processing chromosome C28876 INFO [2014-03-08 06:24:31,523] [Preprocessor.java:241] [main] Processing chromosome C28884 Processing chromosome C28884 INFO [2014-03-08 06:24:31,529] [Preprocessor.java:241] [main] Processing chromosome C28898 Processing chromosome C28898 INFO [2014-03-08 06:24:31,541] [Preprocessor.java:241] [main] Processing chromosome C28902 Processing chromosome C28902 INFO [2014-03-08 06:24:31,550] [Preprocessor.java:241] [main] Processing chromosome C28906 Processing chromosome C28906 INFO [2014-03-08 06:24:31,561] [Preprocessor.java:241] [main] Processing chromosome C28910 Processing chromosome C28910 INFO [2014-03-08 06:24:31,576] [Preprocessor.java:241] [main] Processing chromosome C28916 Processing chromosome C28916 INFO [2014-03-08 06:24:31,585] [Preprocessor.java:241] [main] Processing chromosome C28934 Processing chromosome C28934 INFO [2014-03-08 06:24:31,595] [Preprocessor.java:241] [main] Processing chromosome C28952 Processing chromosome C28952 INFO [2014-03-08 06:24:31,613] [Preprocessor.java:241] [main] Processing chromosome C28958 Processing chromosome C28958 INFO [2014-03-08 06:24:31,619] [Preprocessor.java:241] [main] Processing chromosome C28974 Processing chromosome C28974 INFO [2014-03-08 06:24:31,643] [Preprocessor.java:241] [main] Processing chromosome C28982 Processing chromosome C28982 INFO [2014-03-08 06:24:31,667] [Preprocessor.java:241] [main] Processing chromosome C28990 Processing chromosome C28990 INFO [2014-03-08 06:24:31,696] [Preprocessor.java:241] [main] Processing chromosome C28992 Processing chromosome C28992 INFO [2014-03-08 06:24:31,731] [Preprocessor.java:241] [main] Processing chromosome C28996 Processing chromosome C28996 INFO [2014-03-08 06:24:31,750] [Preprocessor.java:241] [main] Processing chromosome C28998 Processing chromosome C28998 INFO [2014-03-08 06:24:31,780] [Preprocessor.java:241] [main] Processing chromosome C29006 Processing chromosome C29006 INFO [2014-03-08 06:24:31,787] [Preprocessor.java:241] [main] Processing chromosome C29008 Processing chromosome C29008 INFO [2014-03-08 06:24:31,808] [Preprocessor.java:241] [main] Processing chromosome C29010 Processing chromosome C29010 INFO [2014-03-08 06:24:31,824] [Preprocessor.java:241] [main] Processing chromosome C29022 Processing chromosome C29022 INFO [2014-03-08 06:24:31,831] [Preprocessor.java:241] [main] Processing chromosome C29030 Processing chromosome C29030 INFO [2014-03-08 06:24:31,836] [Preprocessor.java:241] [main] Processing chromosome C29038 Processing chromosome C29038 INFO [2014-03-08 06:24:31,843] [Preprocessor.java:241] [main] Processing chromosome C29044 Processing chromosome C29044 INFO [2014-03-08 06:24:31,847] [Preprocessor.java:241] [main] Processing chromosome C29048 Processing chromosome C29048 INFO [2014-03-08 06:24:31,873] [Preprocessor.java:241] [main] Processing chromosome C29050 Processing chromosome C29050 INFO [2014-03-08 06:24:31,888] [Preprocessor.java:241] [main] Processing chromosome C29052 Processing chromosome C29052 INFO [2014-03-08 06:24:31,911] [Preprocessor.java:241] [main] Processing chromosome C29066 Processing chromosome C29066 INFO [2014-03-08 06:24:31,928] [Preprocessor.java:241] [main] Processing chromosome C29070 Processing chromosome C29070 INFO [2014-03-08 06:24:31,949] [Preprocessor.java:241] [main] Processing chromosome C29072 Processing chromosome C29072 INFO [2014-03-08 06:24:31,951] [Preprocessor.java:241] [main] Processing chromosome C29084 Processing chromosome C29084 INFO [2014-03-08 06:24:31,956] [Preprocessor.java:241] [main] Processing chromosome C29100 Processing chromosome C29100 INFO [2014-03-08 06:24:31,980] [Preprocessor.java:241] [main] Processing chromosome C29106 Processing chromosome C29106 INFO [2014-03-08 06:24:31,983] [Preprocessor.java:241] [main] Processing chromosome C29108 Processing chromosome C29108 INFO [2014-03-08 06:24:31,985] [Preprocessor.java:241] [main] Processing chromosome C29110 Processing chromosome C29110 INFO [2014-03-08 06:24:31,999] [Preprocessor.java:241] [main] Processing chromosome C29112 Processing chromosome C29112 INFO [2014-03-08 06:24:32,017] [Preprocessor.java:241] [main] Processing chromosome C29114 Processing chromosome C29114 INFO [2014-03-08 06:24:32,030] [Preprocessor.java:241] [main] Processing chromosome C29122 Processing chromosome C29122 INFO [2014-03-08 06:24:32,032] [Preprocessor.java:241] [main] Processing chromosome C29132 Processing chromosome C29132 INFO [2014-03-08 06:24:32,049] [Preprocessor.java:241] [main] Processing chromosome C29134 Processing chromosome C29134 INFO [2014-03-08 06:24:32,068] [Preprocessor.java:241] [main] Processing chromosome C29144 Processing chromosome C29144 INFO [2014-03-08 06:24:32,093] [Preprocessor.java:241] [main] Processing chromosome C29154 Processing chromosome C29154 INFO [2014-03-08 06:24:32,098] [Preprocessor.java:241] [main] Processing chromosome C29164 Processing chromosome C29164 INFO [2014-03-08 06:24:32,126] [Preprocessor.java:241] [main] Processing chromosome C29168 Processing chromosome C29168 INFO [2014-03-08 06:24:32,180] [Preprocessor.java:241] [main] Processing chromosome C29170 Processing chromosome C29170 INFO [2014-03-08 06:24:32,185] [Preprocessor.java:241] [main] Processing chromosome C29178 Processing chromosome C29178 INFO [2014-03-08 06:24:32,211] [Preprocessor.java:241] [main] Processing chromosome C29184 Processing chromosome C29184 INFO [2014-03-08 06:24:32,224] [Preprocessor.java:241] [main] Processing chromosome C29186 Processing chromosome C29186 INFO [2014-03-08 06:24:32,266] [Preprocessor.java:241] [main] Processing chromosome C29188 Processing chromosome C29188 INFO [2014-03-08 06:24:32,289] [Preprocessor.java:241] [main] Processing chromosome C29192 Processing chromosome C29192 INFO [2014-03-08 06:24:32,298] [Preprocessor.java:241] [main] Processing chromosome C29194 Processing chromosome C29194 INFO [2014-03-08 06:24:32,308] [Preprocessor.java:241] [main] Processing chromosome C29202 Processing chromosome C29202 INFO [2014-03-08 06:24:32,311] [Preprocessor.java:241] [main] Processing chromosome C29208 Processing chromosome C29208 INFO [2014-03-08 06:24:32,333] [Preprocessor.java:241] [main] Processing chromosome C29214 Processing chromosome C29214 INFO [2014-03-08 06:24:32,337] [Preprocessor.java:241] [main] Processing chromosome C29222 Processing chromosome C29222 INFO [2014-03-08 06:24:32,350] [Preprocessor.java:241] [main] Processing chromosome C29224 Processing chromosome C29224 INFO [2014-03-08 06:24:32,354] [Preprocessor.java:241] [main] Processing chromosome C29238 Processing chromosome C29238 INFO [2014-03-08 06:24:32,368] [Preprocessor.java:241] [main] Processing chromosome C29242 Processing chromosome C29242 INFO [2014-03-08 06:24:32,374] [Preprocessor.java:241] [main] Processing chromosome C29244 Processing chromosome C29244 INFO [2014-03-08 06:24:32,399] [Preprocessor.java:241] [main] Processing chromosome C29246 Processing chromosome C29246 INFO [2014-03-08 06:24:32,410] [Preprocessor.java:241] [main] Processing chromosome C29248 Processing chromosome C29248 INFO [2014-03-08 06:24:32,425] [Preprocessor.java:241] [main] Processing chromosome C29254 Processing chromosome C29254 INFO [2014-03-08 06:24:32,459] [Preprocessor.java:241] [main] Processing chromosome C29258 Processing chromosome C29258 INFO [2014-03-08 06:24:32,486] [Preprocessor.java:241] [main] Processing chromosome C29260 Processing chromosome C29260 INFO [2014-03-08 06:24:32,505] [Preprocessor.java:241] [main] Processing chromosome C29272 Processing chromosome C29272 INFO [2014-03-08 06:24:32,509] [Preprocessor.java:241] [main] Processing chromosome C29274 Processing chromosome C29274 INFO [2014-03-08 06:24:32,528] [Preprocessor.java:241] [main] Processing chromosome C29280 Processing chromosome C29280 INFO [2014-03-08 06:24:32,556] [Preprocessor.java:241] [main] Processing chromosome C29290 Processing chromosome C29290 INFO [2014-03-08 06:24:32,564] [Preprocessor.java:241] [main] Processing chromosome C29294 Processing chromosome C29294 INFO [2014-03-08 06:24:32,608] [Preprocessor.java:241] [main] Processing chromosome C29298 Processing chromosome C29298 INFO [2014-03-08 06:24:32,636] [Preprocessor.java:241] [main] Processing chromosome C29300 Processing chromosome C29300 INFO [2014-03-08 06:24:32,661] [Preprocessor.java:241] [main] Processing chromosome C29308 Processing chromosome C29308 INFO [2014-03-08 06:24:32,671] [Preprocessor.java:241] [main] Processing chromosome C2931 Processing chromosome C2931 INFO [2014-03-08 06:24:32,740] [Preprocessor.java:241] [main] Processing chromosome C29320 Processing chromosome C29320 INFO [2014-03-08 06:24:32,763] [Preprocessor.java:241] [main] Processing chromosome C29322 Processing chromosome C29322 INFO [2014-03-08 06:24:32,783] [Preprocessor.java:241] [main] Processing chromosome C29340 Processing chromosome C29340 INFO [2014-03-08 06:24:32,789] [Preprocessor.java:241] [main] Processing chromosome C29344 Processing chromosome C29344 INFO [2014-03-08 06:24:32,798] [Preprocessor.java:241] [main] Processing chromosome C29346 Processing chromosome C29346 INFO [2014-03-08 06:24:32,822] [Preprocessor.java:241] [main] Processing chromosome C29348 Processing chromosome C29348 INFO [2014-03-08 06:24:32,829] [Preprocessor.java:241] [main] Processing chromosome C29354 Processing chromosome C29354 INFO [2014-03-08 06:24:32,837] [Preprocessor.java:241] [main] Processing chromosome C29356 Processing chromosome C29356 INFO [2014-03-08 06:24:32,853] [Preprocessor.java:241] [main] Processing chromosome C29362 Processing chromosome C29362 INFO [2014-03-08 06:24:32,871] [Preprocessor.java:241] [main] Processing chromosome C29364 Processing chromosome C29364 INFO [2014-03-08 06:24:32,884] [Preprocessor.java:241] [main] Processing chromosome C29368 Processing chromosome C29368 INFO [2014-03-08 06:24:32,941] [Preprocessor.java:241] [main] Processing chromosome C29380 Processing chromosome C29380 INFO [2014-03-08 06:24:32,959] [Preprocessor.java:241] [main] Processing chromosome C29388 Processing chromosome C29388 INFO [2014-03-08 06:24:33,036] [Preprocessor.java:241] [main] Processing chromosome C29394 Processing chromosome C29394 INFO [2014-03-08 06:24:33,067] [Preprocessor.java:241] [main] Processing chromosome C29398 Processing chromosome C29398 INFO [2014-03-08 06:24:33,104] [Preprocessor.java:241] [main] Processing chromosome C29400 Processing chromosome C29400 INFO [2014-03-08 06:24:33,114] [Preprocessor.java:241] [main] Processing chromosome C29408 Processing chromosome C29408 INFO [2014-03-08 06:24:33,120] [Preprocessor.java:241] [main] Processing chromosome C29410 Processing chromosome C29410 INFO [2014-03-08 06:24:33,175] [Preprocessor.java:241] [main] Processing chromosome C29414 Processing chromosome C29414 INFO [2014-03-08 06:24:33,187] [Preprocessor.java:241] [main] Processing chromosome C29416 Processing chromosome C29416 INFO [2014-03-08 06:24:33,193] [Preprocessor.java:241] [main] Processing chromosome C29424 Processing chromosome C29424 INFO [2014-03-08 06:24:33,215] [Preprocessor.java:241] [main] Processing chromosome C29428 Processing chromosome C29428 INFO [2014-03-08 06:24:33,250] [Preprocessor.java:241] [main] Processing chromosome C29432 Processing chromosome C29432 INFO [2014-03-08 06:24:33,333] [Preprocessor.java:241] [main] Processing chromosome C29438 Processing chromosome C29438 INFO [2014-03-08 06:24:33,343] [Preprocessor.java:241] [main] Processing chromosome C29444 Processing chromosome C29444 INFO [2014-03-08 06:24:33,395] [Preprocessor.java:241] [main] Processing chromosome C29446 Processing chromosome C29446 INFO [2014-03-08 06:24:33,420] [Preprocessor.java:241] [main] Processing chromosome C29450 Processing chromosome C29450 INFO [2014-03-08 06:24:33,451] [Preprocessor.java:241] [main] Processing chromosome C29458 Processing chromosome C29458 INFO [2014-03-08 06:24:33,490] [Preprocessor.java:241] [main] Processing chromosome C29472 Processing chromosome C29472 INFO [2014-03-08 06:24:33,497] [Preprocessor.java:241] [main] Processing chromosome C29474 Processing chromosome C29474 INFO [2014-03-08 06:24:33,539] [Preprocessor.java:241] [main] Processing chromosome C29494 Processing chromosome C29494 INFO [2014-03-08 06:24:33,551] [Preprocessor.java:241] [main] Processing chromosome C29498 Processing chromosome C29498 INFO [2014-03-08 06:24:33,559] [Preprocessor.java:241] [main] Processing chromosome C29506 Processing chromosome C29506 INFO [2014-03-08 06:24:33,583] [Preprocessor.java:241] [main] Processing chromosome C29510 Processing chromosome C29510 INFO [2014-03-08 06:24:33,591] [Preprocessor.java:241] [main] Processing chromosome C29516 Processing chromosome C29516 INFO [2014-03-08 06:24:33,593] [Preprocessor.java:241] [main] Processing chromosome C29518 Processing chromosome C29518 INFO [2014-03-08 06:24:33,608] [Preprocessor.java:241] [main] Processing chromosome C29524 Processing chromosome C29524 INFO [2014-03-08 06:24:33,612] [Preprocessor.java:241] [main] Processing chromosome C29526 Processing chromosome C29526 INFO [2014-03-08 06:24:33,629] [Preprocessor.java:241] [main] Processing chromosome C29530 Processing chromosome C29530 INFO [2014-03-08 06:24:33,652] [Preprocessor.java:241] [main] Processing chromosome C29538 Processing chromosome C29538 INFO [2014-03-08 06:24:33,691] [Preprocessor.java:241] [main] Processing chromosome C29540 Processing chromosome C29540 INFO [2014-03-08 06:24:33,714] [Preprocessor.java:241] [main] Processing chromosome C29542 Processing chromosome C29542 INFO [2014-03-08 06:24:33,716] [Preprocessor.java:241] [main] Processing chromosome C29544 Processing chromosome C29544 INFO [2014-03-08 06:24:33,722] [Preprocessor.java:241] [main] Processing chromosome C29548 Processing chromosome C29548 INFO [2014-03-08 06:24:33,730] [Preprocessor.java:241] [main] Processing chromosome C29554 Processing chromosome C29554 INFO [2014-03-08 06:24:33,753] [Preprocessor.java:241] [main] Processing chromosome C29558 Processing chromosome C29558 INFO [2014-03-08 06:24:33,762] [Preprocessor.java:241] [main] Processing chromosome C29566 Processing chromosome C29566 INFO [2014-03-08 06:24:33,765] [Preprocessor.java:241] [main] Processing chromosome C29572 Processing chromosome C29572 INFO [2014-03-08 06:24:33,775] [Preprocessor.java:241] [main] Processing chromosome C29576 Processing chromosome C29576 INFO [2014-03-08 06:24:33,798] [Preprocessor.java:241] [main] Processing chromosome C29582 Processing chromosome C29582 INFO [2014-03-08 06:24:33,804] [Preprocessor.java:241] [main] Processing chromosome C29584 Processing chromosome C29584 INFO [2014-03-08 06:24:33,851] [Preprocessor.java:241] [main] Processing chromosome C29612 Processing chromosome C29612 INFO [2014-03-08 06:24:33,871] [Preprocessor.java:241] [main] Processing chromosome C29614 Processing chromosome C29614 INFO [2014-03-08 06:24:33,896] [Preprocessor.java:241] [main] Processing chromosome C29618 Processing chromosome C29618 INFO [2014-03-08 06:24:33,914] [Preprocessor.java:241] [main] Processing chromosome C29620 Processing chromosome C29620 INFO [2014-03-08 06:24:33,934] [Preprocessor.java:241] [main] Processing chromosome C29624 Processing chromosome C29624 INFO [2014-03-08 06:24:33,956] [Preprocessor.java:241] [main] Processing chromosome C29632 Processing chromosome C29632 INFO [2014-03-08 06:24:33,973] [Preprocessor.java:241] [main] Processing chromosome C29634 Processing chromosome C29634 INFO [2014-03-08 06:24:34,008] [Preprocessor.java:241] [main] Processing chromosome C29638 Processing chromosome C29638 INFO [2014-03-08 06:24:34,028] [Preprocessor.java:241] [main] Processing chromosome C29642 Processing chromosome C29642 INFO [2014-03-08 06:24:34,043] [Preprocessor.java:241] [main] Processing chromosome C29644 Processing chromosome C29644 INFO [2014-03-08 06:24:34,073] [Preprocessor.java:241] [main] Processing chromosome C29662 Processing chromosome C29662 INFO [2014-03-08 06:24:34,145] [Preprocessor.java:241] [main] Processing chromosome C29664 Processing chromosome C29664 INFO [2014-03-08 06:24:34,149] [Preprocessor.java:241] [main] Processing chromosome C2967 Processing chromosome C2967 INFO [2014-03-08 06:24:34,217] [Preprocessor.java:241] [main] Processing chromosome C29670 Processing chromosome C29670 INFO [2014-03-08 06:24:34,224] [Preprocessor.java:241] [main] Processing chromosome C29678 Processing chromosome C29678 INFO [2014-03-08 06:24:34,233] [Preprocessor.java:241] [main] Processing chromosome C29680 Processing chromosome C29680 INFO [2014-03-08 06:24:34,236] [Preprocessor.java:241] [main] Processing chromosome C29682 Processing chromosome C29682 INFO [2014-03-08 06:24:34,246] [Preprocessor.java:241] [main] Processing chromosome C29704 Processing chromosome C29704 INFO [2014-03-08 06:24:34,256] [Preprocessor.java:241] [main] Processing chromosome C29722 Processing chromosome C29722 INFO [2014-03-08 06:24:34,291] [Preprocessor.java:241] [main] Processing chromosome C29724 Processing chromosome C29724 INFO [2014-03-08 06:24:34,294] [Preprocessor.java:241] [main] Processing chromosome C29730 Processing chromosome C29730 INFO [2014-03-08 06:24:34,303] [Preprocessor.java:241] [main] Processing chromosome C29734 Processing chromosome C29734 INFO [2014-03-08 06:24:34,324] [Preprocessor.java:241] [main] Processing chromosome C29736 Processing chromosome C29736 INFO [2014-03-08 06:24:34,332] [Preprocessor.java:241] [main] Processing chromosome C29750 Processing chromosome C29750 INFO [2014-03-08 06:24:34,362] [Preprocessor.java:241] [main] Processing chromosome C29758 Processing chromosome C29758 INFO [2014-03-08 06:24:34,399] [Preprocessor.java:241] [main] Processing chromosome C29764 Processing chromosome C29764 INFO [2014-03-08 06:24:34,419] [Preprocessor.java:241] [main] Processing chromosome C29766 Processing chromosome C29766 INFO [2014-03-08 06:24:34,442] [Preprocessor.java:241] [main] Processing chromosome C29768 Processing chromosome C29768 INFO [2014-03-08 06:24:34,450] [Preprocessor.java:241] [main] Processing chromosome C29774 Processing chromosome C29774 INFO [2014-03-08 06:24:34,470] [Preprocessor.java:241] [main] Processing chromosome C29784 Processing chromosome C29784 INFO [2014-03-08 06:24:34,494] [Preprocessor.java:241] [main] Processing chromosome C29786 Processing chromosome C29786 INFO [2014-03-08 06:24:34,501] [Preprocessor.java:241] [main] Processing chromosome C29788 Processing chromosome C29788 INFO [2014-03-08 06:24:34,520] [Preprocessor.java:241] [main] Processing chromosome C29798 Processing chromosome C29798 INFO [2014-03-08 06:24:34,560] [Preprocessor.java:241] [main] Processing chromosome C29820 Processing chromosome C29820 INFO [2014-03-08 06:24:34,567] [Preprocessor.java:241] [main] Processing chromosome C29848 Processing chromosome C29848 INFO [2014-03-08 06:24:34,579] [Preprocessor.java:241] [main] Processing chromosome C29854 Processing chromosome C29854 INFO [2014-03-08 06:24:34,583] [Preprocessor.java:241] [main] Processing chromosome C29876 Processing chromosome C29876 INFO [2014-03-08 06:24:34,600] [Preprocessor.java:241] [main] Processing chromosome C29878 Processing chromosome C29878 INFO [2014-03-08 06:24:34,638] [Preprocessor.java:241] [main] Processing chromosome C29882 Processing chromosome C29882 INFO [2014-03-08 06:24:34,656] [Preprocessor.java:241] [main] Processing chromosome C29898 Processing chromosome C29898 INFO [2014-03-08 06:24:34,673] [Preprocessor.java:241] [main] Processing chromosome C29902 Processing chromosome C29902 INFO [2014-03-08 06:24:34,705] [Preprocessor.java:241] [main] Processing chromosome C29904 Processing chromosome C29904 INFO [2014-03-08 06:24:34,723] [Preprocessor.java:241] [main] Processing chromosome C29908 Processing chromosome C29908 INFO [2014-03-08 06:24:34,734] [Preprocessor.java:241] [main] Processing chromosome C29914 Processing chromosome C29914 INFO [2014-03-08 06:24:34,741] [Preprocessor.java:241] [main] Processing chromosome C29928 Processing chromosome C29928 INFO [2014-03-08 06:24:34,749] [Preprocessor.java:241] [main] Processing chromosome C29936 Processing chromosome C29936 INFO [2014-03-08 06:24:34,765] [Preprocessor.java:241] [main] Processing chromosome C29942 Processing chromosome C29942 INFO [2014-03-08 06:24:34,808] [Preprocessor.java:241] [main] Processing chromosome C29946 Processing chromosome C29946 INFO [2014-03-08 06:24:34,825] [Preprocessor.java:241] [main] Processing chromosome C29950 Processing chromosome C29950 INFO [2014-03-08 06:24:34,835] [Preprocessor.java:241] [main] Processing chromosome C29954 Processing chromosome C29954 INFO [2014-03-08 06:24:34,865] [Preprocessor.java:241] [main] Processing chromosome C29956 Processing chromosome C29956 INFO [2014-03-08 06:24:34,900] [Preprocessor.java:241] [main] Processing chromosome C29958 Processing chromosome C29958 INFO [2014-03-08 06:24:34,927] [Preprocessor.java:241] [main] Processing chromosome C29960 Processing chromosome C29960 INFO [2014-03-08 06:24:34,972] [Preprocessor.java:241] [main] Processing chromosome C29966 Processing chromosome C29966 INFO [2014-03-08 06:24:34,981] [Preprocessor.java:241] [main] Processing chromosome C29968 Processing chromosome C29968 INFO [2014-03-08 06:24:35,001] [Preprocessor.java:241] [main] Processing chromosome C29970 Processing chromosome C29970 INFO [2014-03-08 06:24:35,017] [Preprocessor.java:241] [main] Processing chromosome C29974 Processing chromosome C29974 INFO [2014-03-08 06:24:35,029] [Preprocessor.java:241] [main] Processing chromosome C29976 Processing chromosome C29976 INFO [2014-03-08 06:24:35,040] [Preprocessor.java:241] [main] Processing chromosome C29980 Processing chromosome C29980 INFO [2014-03-08 06:24:35,050] [Preprocessor.java:241] [main] Processing chromosome C29986 Processing chromosome C29986 INFO [2014-03-08 06:24:35,088] [Preprocessor.java:241] [main] Processing chromosome C29988 Processing chromosome C29988 INFO [2014-03-08 06:24:35,104] [Preprocessor.java:241] [main] Processing chromosome C29992 Processing chromosome C29992 INFO [2014-03-08 06:24:35,110] [Preprocessor.java:241] [main] Processing chromosome C29994 Processing chromosome C29994 INFO [2014-03-08 06:24:35,127] [Preprocessor.java:241] [main] Processing chromosome C30002 Processing chromosome C30002 INFO [2014-03-08 06:24:35,141] [Preprocessor.java:241] [main] Processing chromosome C30012 Processing chromosome C30012 INFO [2014-03-08 06:24:35,149] [Preprocessor.java:241] [main] Processing chromosome C30022 Processing chromosome C30022 INFO [2014-03-08 06:24:35,156] [Preprocessor.java:241] [main] Processing chromosome C30038 Processing chromosome C30038 INFO [2014-03-08 06:24:35,171] [Preprocessor.java:241] [main] Processing chromosome C30040 Processing chromosome C30040 INFO [2014-03-08 06:24:35,202] [Preprocessor.java:241] [main] Processing chromosome C30042 Processing chromosome C30042 INFO [2014-03-08 06:24:35,210] [Preprocessor.java:241] [main] Processing chromosome C30044 Processing chromosome C30044 INFO [2014-03-08 06:24:35,240] [Preprocessor.java:241] [main] Processing chromosome C30046 Processing chromosome C30046 INFO [2014-03-08 06:24:35,283] [Preprocessor.java:241] [main] Processing chromosome C30058 Processing chromosome C30058 INFO [2014-03-08 06:24:35,290] [Preprocessor.java:241] [main] Processing chromosome C30060 Processing chromosome C30060 INFO [2014-03-08 06:24:35,305] [Preprocessor.java:241] [main] Processing chromosome C30072 Processing chromosome C30072 INFO [2014-03-08 06:24:35,315] [Preprocessor.java:241] [main] Processing chromosome C30084 Processing chromosome C30084 INFO [2014-03-08 06:24:35,332] [Preprocessor.java:241] [main] Processing chromosome C30100 Processing chromosome C30100 INFO [2014-03-08 06:24:35,342] [Preprocessor.java:241] [main] Processing chromosome C30110 Processing chromosome C30110 INFO [2014-03-08 06:24:35,351] [Preprocessor.java:241] [main] Processing chromosome C30118 Processing chromosome C30118 INFO [2014-03-08 06:24:35,371] [Preprocessor.java:241] [main] Processing chromosome C30120 Processing chromosome C30120 INFO [2014-03-08 06:24:35,382] [Preprocessor.java:241] [main] Processing chromosome C30124 Processing chromosome C30124 INFO [2014-03-08 06:24:35,437] [Preprocessor.java:241] [main] Processing chromosome C30126 Processing chromosome C30126 INFO [2014-03-08 06:24:35,477] [Preprocessor.java:241] [main] Processing chromosome C30130 Processing chromosome C30130 INFO [2014-03-08 06:24:35,489] [Preprocessor.java:241] [main] Processing chromosome C30140 Processing chromosome C30140 INFO [2014-03-08 06:24:35,494] [Preprocessor.java:241] [main] Processing chromosome C30144 Processing chromosome C30144 INFO [2014-03-08 06:24:35,521] [Preprocessor.java:241] [main] Processing chromosome C30162 Processing chromosome C30162 INFO [2014-03-08 06:24:35,535] [Preprocessor.java:241] [main] Processing chromosome C30166 Processing chromosome C30166 INFO [2014-03-08 06:24:35,568] [Preprocessor.java:241] [main] Processing chromosome C30176 Processing chromosome C30176 INFO [2014-03-08 06:24:35,573] [Preprocessor.java:241] [main] Processing chromosome C30178 Processing chromosome C30178 INFO [2014-03-08 06:24:35,590] [Preprocessor.java:241] [main] Processing chromosome C30186 Processing chromosome C30186 INFO [2014-03-08 06:24:35,630] [Preprocessor.java:241] [main] Processing chromosome C30188 Processing chromosome C30188 INFO [2014-03-08 06:24:35,653] [Preprocessor.java:241] [main] Processing chromosome C30206 Processing chromosome C30206 INFO [2014-03-08 06:24:35,700] [Preprocessor.java:241] [main] Processing chromosome C30216 Processing chromosome C30216 INFO [2014-03-08 06:24:35,747] [Preprocessor.java:241] [main] Processing chromosome C30224 Processing chromosome C30224 INFO [2014-03-08 06:24:35,761] [Preprocessor.java:241] [main] Processing chromosome C30226 Processing chromosome C30226 INFO [2014-03-08 06:24:35,782] [Preprocessor.java:241] [main] Processing chromosome C30232 Processing chromosome C30232 INFO [2014-03-08 06:24:35,787] [Preprocessor.java:241] [main] Processing chromosome C30238 Processing chromosome C30238 INFO [2014-03-08 06:24:35,818] [Preprocessor.java:241] [main] Processing chromosome C30240 Processing chromosome C30240 INFO [2014-03-08 06:24:35,843] [Preprocessor.java:241] [main] Processing chromosome C30252 Processing chromosome C30252 INFO [2014-03-08 06:24:35,868] [Preprocessor.java:241] [main] Processing chromosome C30258 Processing chromosome C30258 INFO [2014-03-08 06:24:35,889] [Preprocessor.java:241] [main] Processing chromosome C30260 Processing chromosome C30260 INFO [2014-03-08 06:24:35,899] [Preprocessor.java:241] [main] Processing chromosome C30262 Processing chromosome C30262 INFO [2014-03-08 06:24:35,942] [Preprocessor.java:241] [main] Processing chromosome C30282 Processing chromosome C30282 INFO [2014-03-08 06:24:35,968] [Preprocessor.java:241] [main] Processing chromosome C30292 Processing chromosome C30292 INFO [2014-03-08 06:24:35,983] [Preprocessor.java:241] [main] Processing chromosome C30294 Processing chromosome C30294 INFO [2014-03-08 06:24:36,017] [Preprocessor.java:241] [main] Processing chromosome C30296 Processing chromosome C30296 INFO [2014-03-08 06:24:36,056] [Preprocessor.java:241] [main] Processing chromosome C30300 Processing chromosome C30300 INFO [2014-03-08 06:24:36,082] [Preprocessor.java:241] [main] Processing chromosome C30322 Processing chromosome C30322 INFO [2014-03-08 06:24:36,119] [Preprocessor.java:241] [main] Processing chromosome C30324 Processing chromosome C30324 INFO [2014-03-08 06:24:36,132] [Preprocessor.java:241] [main] Processing chromosome C30332 Processing chromosome C30332 INFO [2014-03-08 06:24:36,146] [Preprocessor.java:241] [main] Processing chromosome C30336 Processing chromosome C30336 INFO [2014-03-08 06:24:36,162] [Preprocessor.java:241] [main] Processing chromosome C30340 Processing chromosome C30340 INFO [2014-03-08 06:24:36,214] [Preprocessor.java:241] [main] Processing chromosome C30344 Processing chromosome C30344 INFO [2014-03-08 06:24:36,220] [Preprocessor.java:241] [main] Processing chromosome C30354 Processing chromosome C30354 INFO [2014-03-08 06:24:36,223] [Preprocessor.java:241] [main] Processing chromosome C30356 Processing chromosome C30356 INFO [2014-03-08 06:24:36,252] [Preprocessor.java:241] [main] Processing chromosome C30362 Processing chromosome C30362 INFO [2014-03-08 06:24:36,282] [Preprocessor.java:241] [main] Processing chromosome C30368 Processing chromosome C30368 INFO [2014-03-08 06:24:36,285] [Preprocessor.java:241] [main] Processing chromosome C30398 Processing chromosome C30398 INFO [2014-03-08 06:24:36,290] [Preprocessor.java:241] [main] Processing chromosome C30414 Processing chromosome C30414 INFO [2014-03-08 06:24:36,324] [Preprocessor.java:241] [main] Processing chromosome C30426 Processing chromosome C30426 INFO [2014-03-08 06:24:36,358] [Preprocessor.java:241] [main] Processing chromosome C30430 Processing chromosome C30430 INFO [2014-03-08 06:24:36,372] [Preprocessor.java:241] [main] Processing chromosome C30434 Processing chromosome C30434 INFO [2014-03-08 06:24:36,398] [Preprocessor.java:241] [main] Processing chromosome C30444 Processing chromosome C30444 INFO [2014-03-08 06:24:36,409] [Preprocessor.java:241] [main] Processing chromosome C30458 Processing chromosome C30458 INFO [2014-03-08 06:24:36,425] [Preprocessor.java:241] [main] Processing chromosome C30460 Processing chromosome C30460 INFO [2014-03-08 06:24:36,455] [Preprocessor.java:241] [main] Processing chromosome C30472 Processing chromosome C30472 INFO [2014-03-08 06:24:36,496] [Preprocessor.java:241] [main] Processing chromosome C30476 Processing chromosome C30476 INFO [2014-03-08 06:24:36,543] [Preprocessor.java:241] [main] Processing chromosome C30482 Processing chromosome C30482 INFO [2014-03-08 06:24:36,552] [Preprocessor.java:241] [main] Processing chromosome C30496 Processing chromosome C30496 INFO [2014-03-08 06:24:36,587] [Preprocessor.java:241] [main] Processing chromosome C30498 Processing chromosome C30498 INFO [2014-03-08 06:24:36,596] [Preprocessor.java:241] [main] Processing chromosome C30500 Processing chromosome C30500 INFO [2014-03-08 06:24:36,625] [Preprocessor.java:241] [main] Processing chromosome C30504 Processing chromosome C30504 INFO [2014-03-08 06:24:36,645] [Preprocessor.java:241] [main] Processing chromosome C30506 Processing chromosome C30506 INFO [2014-03-08 06:24:36,682] [Preprocessor.java:241] [main] Processing chromosome C30508 Processing chromosome C30508 INFO [2014-03-08 06:24:36,708] [Preprocessor.java:241] [main] Processing chromosome C30514 Processing chromosome C30514 INFO [2014-03-08 06:24:36,774] [Preprocessor.java:241] [main] Processing chromosome C30522 Processing chromosome C30522 INFO [2014-03-08 06:24:36,787] [Preprocessor.java:241] [main] Processing chromosome C30526 Processing chromosome C30526 INFO [2014-03-08 06:24:36,823] [Preprocessor.java:241] [main] Processing chromosome C30534 Processing chromosome C30534 INFO [2014-03-08 06:24:36,850] [Preprocessor.java:241] [main] Processing chromosome C30538 Processing chromosome C30538 INFO [2014-03-08 06:24:36,855] [Preprocessor.java:241] [main] Processing chromosome C30542 Processing chromosome C30542 INFO [2014-03-08 06:24:36,861] [Preprocessor.java:241] [main] Processing chromosome C30560 Processing chromosome C30560 INFO [2014-03-08 06:24:36,882] [Preprocessor.java:241] [main] Processing chromosome C30566 Processing chromosome C30566 INFO [2014-03-08 06:24:36,915] [Preprocessor.java:241] [main] Processing chromosome C30570 Processing chromosome C30570 INFO [2014-03-08 06:24:36,976] [Preprocessor.java:241] [main] Processing chromosome C30576 Processing chromosome C30576 INFO [2014-03-08 06:24:36,984] [Preprocessor.java:241] [main] Processing chromosome C30582 Processing chromosome C30582 INFO [2014-03-08 06:24:36,998] [Preprocessor.java:241] [main] Processing chromosome C30584 Processing chromosome C30584 INFO [2014-03-08 06:24:37,041] [Preprocessor.java:241] [main] Processing chromosome C30592 Processing chromosome C30592 INFO [2014-03-08 06:24:37,078] [Preprocessor.java:241] [main] Processing chromosome C30608 Processing chromosome C30608 INFO [2014-03-08 06:24:37,115] [Preprocessor.java:241] [main] Processing chromosome C30620 Processing chromosome C30620 INFO [2014-03-08 06:24:37,141] [Preprocessor.java:241] [main] Processing chromosome C30622 Processing chromosome C30622 INFO [2014-03-08 06:24:37,165] [Preprocessor.java:241] [main] Processing chromosome C30632 Processing chromosome C30632 INFO [2014-03-08 06:24:37,205] [Preprocessor.java:241] [main] Processing chromosome C30662 Processing chromosome C30662 INFO [2014-03-08 06:24:37,217] [Preprocessor.java:241] [main] Processing chromosome C30668 Processing chromosome C30668 INFO [2014-03-08 06:24:37,227] [Preprocessor.java:241] [main] Processing chromosome C30680 Processing chromosome C30680 INFO [2014-03-08 06:24:37,256] [Preprocessor.java:241] [main] Processing chromosome C30694 Processing chromosome C30694 INFO [2014-03-08 06:24:37,274] [Preprocessor.java:241] [main] Processing chromosome C30708 Processing chromosome C30708 INFO [2014-03-08 06:24:37,299] [Preprocessor.java:241] [main] Processing chromosome C30724 Processing chromosome C30724 INFO [2014-03-08 06:24:37,337] [Preprocessor.java:241] [main] Processing chromosome C30728 Processing chromosome C30728 INFO [2014-03-08 06:24:37,346] [Preprocessor.java:241] [main] Processing chromosome C30736 Processing chromosome C30736 INFO [2014-03-08 06:24:37,356] [Preprocessor.java:241] [main] Processing chromosome C30746 Processing chromosome C30746 INFO [2014-03-08 06:24:37,362] [Preprocessor.java:241] [main] Processing chromosome C30752 Processing chromosome C30752 INFO [2014-03-08 06:24:37,365] [Preprocessor.java:241] [main] Processing chromosome C30754 Processing chromosome C30754 INFO [2014-03-08 06:24:37,412] [Preprocessor.java:241] [main] Processing chromosome C30756 Processing chromosome C30756 INFO [2014-03-08 06:24:37,418] [Preprocessor.java:241] [main] Processing chromosome C30766 Processing chromosome C30766 INFO [2014-03-08 06:24:37,422] [Preprocessor.java:241] [main] Processing chromosome C30768 Processing chromosome C30768 INFO [2014-03-08 06:24:37,441] [Preprocessor.java:241] [main] Processing chromosome C30770 Processing chromosome C30770 INFO [2014-03-08 06:24:37,448] [Preprocessor.java:241] [main] Processing chromosome C30792 Processing chromosome C30792 INFO [2014-03-08 06:24:37,462] [Preprocessor.java:241] [main] Processing chromosome C30796 Processing chromosome C30796 INFO [2014-03-08 06:24:37,520] [Preprocessor.java:241] [main] Processing chromosome C30800 Processing chromosome C30800 INFO [2014-03-08 06:24:37,564] [Preprocessor.java:241] [main] Processing chromosome C30802 Processing chromosome C30802 INFO [2014-03-08 06:24:37,577] [Preprocessor.java:241] [main] Processing chromosome C30804 Processing chromosome C30804 INFO [2014-03-08 06:24:37,584] [Preprocessor.java:241] [main] Processing chromosome C30806 Processing chromosome C30806 INFO [2014-03-08 06:24:37,614] [Preprocessor.java:241] [main] Processing chromosome C30816 Processing chromosome C30816 INFO [2014-03-08 06:24:37,648] [Preprocessor.java:241] [main] Processing chromosome C30820 Processing chromosome C30820 INFO [2014-03-08 06:24:37,655] [Preprocessor.java:241] [main] Processing chromosome C30832 Processing chromosome C30832 INFO [2014-03-08 06:24:37,661] [Preprocessor.java:241] [main] Processing chromosome C30848 Processing chromosome C30848 INFO [2014-03-08 06:24:37,691] [Preprocessor.java:241] [main] Processing chromosome C30852 Processing chromosome C30852 INFO [2014-03-08 06:24:37,764] [Preprocessor.java:241] [main] Processing chromosome C30862 Processing chromosome C30862 INFO [2014-03-08 06:24:37,802] [Preprocessor.java:241] [main] Processing chromosome C30870 Processing chromosome C30870 INFO [2014-03-08 06:24:37,816] [Preprocessor.java:241] [main] Processing chromosome C30872 Processing chromosome C30872 INFO [2014-03-08 06:24:37,837] [Preprocessor.java:241] [main] Processing chromosome C30874 Processing chromosome C30874 INFO [2014-03-08 06:24:37,871] [Preprocessor.java:241] [main] Processing chromosome C30882 Processing chromosome C30882 INFO [2014-03-08 06:24:37,878] [Preprocessor.java:241] [main] Processing chromosome C30886 Processing chromosome C30886 INFO [2014-03-08 06:24:37,886] [Preprocessor.java:241] [main] Processing chromosome C30898 Processing chromosome C30898 INFO [2014-03-08 06:24:37,930] [Preprocessor.java:241] [main] Processing chromosome C30904 Processing chromosome C30904 INFO [2014-03-08 06:24:37,932] [Preprocessor.java:241] [main] Processing chromosome C30908 Processing chromosome C30908 INFO [2014-03-08 06:24:37,952] [Preprocessor.java:241] [main] Processing chromosome C30924 Processing chromosome C30924 INFO [2014-03-08 06:24:37,966] [Preprocessor.java:241] [main] Processing chromosome C30946 Processing chromosome C30946 INFO [2014-03-08 06:24:38,015] [Preprocessor.java:241] [main] Processing chromosome C30954 Processing chromosome C30954 INFO [2014-03-08 06:24:38,086] [Preprocessor.java:241] [main] Processing chromosome C30956 Processing chromosome C30956 INFO [2014-03-08 06:24:38,097] [Preprocessor.java:241] [main] Processing chromosome C30958 Processing chromosome C30958 INFO [2014-03-08 06:24:38,140] [Preprocessor.java:241] [main] Processing chromosome C30966 Processing chromosome C30966 INFO [2014-03-08 06:24:38,175] [Preprocessor.java:241] [main] Processing chromosome C30974 Processing chromosome C30974 INFO [2014-03-08 06:24:38,204] [Preprocessor.java:241] [main] Processing chromosome C30980 Processing chromosome C30980 INFO [2014-03-08 06:24:38,208] [Preprocessor.java:241] [main] Processing chromosome C30982 Processing chromosome C30982 INFO [2014-03-08 06:24:38,223] [Preprocessor.java:241] [main] Processing chromosome C30988 Processing chromosome C30988 INFO [2014-03-08 06:24:38,236] [Preprocessor.java:241] [main] Processing chromosome C30994 Processing chromosome C30994 INFO [2014-03-08 06:24:38,259] [Preprocessor.java:241] [main] Processing chromosome C30998 Processing chromosome C30998 INFO [2014-03-08 06:24:38,281] [Preprocessor.java:241] [main] Processing chromosome C31004 Processing chromosome C31004 INFO [2014-03-08 06:24:38,311] [Preprocessor.java:241] [main] Processing chromosome C31012 Processing chromosome C31012 INFO [2014-03-08 06:24:38,356] [Preprocessor.java:241] [main] Processing chromosome C31020 Processing chromosome C31020 INFO [2014-03-08 06:24:38,388] [Preprocessor.java:241] [main] Processing chromosome C31022 Processing chromosome C31022 INFO [2014-03-08 06:24:38,393] [Preprocessor.java:241] [main] Processing chromosome C31036 Processing chromosome C31036 INFO [2014-03-08 06:24:38,448] [Preprocessor.java:241] [main] Processing chromosome C31056 Processing chromosome C31056 INFO [2014-03-08 06:24:38,474] [Preprocessor.java:241] [main] Processing chromosome C31060 Processing chromosome C31060 INFO [2014-03-08 06:24:38,519] [Preprocessor.java:241] [main] Processing chromosome C31062 Processing chromosome C31062 INFO [2014-03-08 06:24:38,533] [Preprocessor.java:241] [main] Processing chromosome C31070 Processing chromosome C31070 INFO [2014-03-08 06:24:38,574] [Preprocessor.java:241] [main] Processing chromosome C31072 Processing chromosome C31072 INFO [2014-03-08 06:24:38,580] [Preprocessor.java:241] [main] Processing chromosome C31096 Processing chromosome C31096 INFO [2014-03-08 06:24:38,640] [Preprocessor.java:241] [main] Processing chromosome C31104 Processing chromosome C31104 INFO [2014-03-08 06:24:38,644] [Preprocessor.java:241] [main] Processing chromosome C31106 Processing chromosome C31106 INFO [2014-03-08 06:24:38,676] [Preprocessor.java:241] [main] Processing chromosome C31130 Processing chromosome C31130 INFO [2014-03-08 06:24:38,710] [Preprocessor.java:241] [main] Processing chromosome C31132 Processing chromosome C31132 INFO [2014-03-08 06:24:38,735] [Preprocessor.java:241] [main] Processing chromosome C31144 Processing chromosome C31144 INFO [2014-03-08 06:24:38,742] [Preprocessor.java:241] [main] Processing chromosome C31156 Processing chromosome C31156 INFO [2014-03-08 06:24:38,753] [Preprocessor.java:241] [main] Processing chromosome C3117 Processing chromosome C3117 INFO [2014-03-08 06:24:38,829] [Preprocessor.java:241] [main] Processing chromosome C31176 Processing chromosome C31176 INFO [2014-03-08 06:24:38,838] [Preprocessor.java:241] [main] Processing chromosome C31202 Processing chromosome C31202 INFO [2014-03-08 06:24:38,843] [Preprocessor.java:241] [main] Processing chromosome C31242 Processing chromosome C31242 INFO [2014-03-08 06:24:38,852] [Preprocessor.java:241] [main] Processing chromosome C31246 Processing chromosome C31246 INFO [2014-03-08 06:24:38,856] [Preprocessor.java:241] [main] Processing chromosome C31256 Processing chromosome C31256 INFO [2014-03-08 06:24:38,888] [Preprocessor.java:241] [main] Processing chromosome C31260 Processing chromosome C31260 INFO [2014-03-08 06:24:38,916] [Preprocessor.java:241] [main] Processing chromosome C31262 Processing chromosome C31262 INFO [2014-03-08 06:24:38,931] [Preprocessor.java:241] [main] Processing chromosome C31264 Processing chromosome C31264 INFO [2014-03-08 06:24:38,956] [Preprocessor.java:241] [main] Processing chromosome C31270 Processing chromosome C31270 INFO [2014-03-08 06:24:38,969] [Preprocessor.java:241] [main] Processing chromosome C31278 Processing chromosome C31278 INFO [2014-03-08 06:24:38,980] [Preprocessor.java:241] [main] Processing chromosome C31292 Processing chromosome C31292 INFO [2014-03-08 06:24:38,997] [Preprocessor.java:241] [main] Processing chromosome C31300 Processing chromosome C31300 INFO [2014-03-08 06:24:38,999] [Preprocessor.java:241] [main] Processing chromosome C31304 Processing chromosome C31304 INFO [2014-03-08 06:24:39,004] [Preprocessor.java:241] [main] Processing chromosome C31322 Processing chromosome C31322 INFO [2014-03-08 06:24:39,018] [Preprocessor.java:241] [main] Processing chromosome C31324 Processing chromosome C31324 INFO [2014-03-08 06:24:39,032] [Preprocessor.java:241] [main] Processing chromosome C31336 Processing chromosome C31336 INFO [2014-03-08 06:24:39,064] [Preprocessor.java:241] [main] Processing chromosome C31340 Processing chromosome C31340 INFO [2014-03-08 06:24:39,080] [Preprocessor.java:241] [main] Processing chromosome C31346 Processing chromosome C31346 INFO [2014-03-08 06:24:39,088] [Preprocessor.java:241] [main] Processing chromosome C31354 Processing chromosome C31354 INFO [2014-03-08 06:24:39,097] [Preprocessor.java:241] [main] Processing chromosome C31366 Processing chromosome C31366 INFO [2014-03-08 06:24:39,102] [Preprocessor.java:241] [main] Processing chromosome C3137 Processing chromosome C3137 INFO [2014-03-08 06:24:39,143] [Preprocessor.java:241] [main] Processing chromosome C31370 Processing chromosome C31370 INFO [2014-03-08 06:24:39,213] [Preprocessor.java:241] [main] Processing chromosome C31380 Processing chromosome C31380 INFO [2014-03-08 06:24:39,248] [Preprocessor.java:241] [main] Processing chromosome C31386 Processing chromosome C31386 INFO [2014-03-08 06:24:39,253] [Preprocessor.java:241] [main] Processing chromosome C31390 Processing chromosome C31390 INFO [2014-03-08 06:24:39,277] [Preprocessor.java:241] [main] Processing chromosome C31396 Processing chromosome C31396 INFO [2014-03-08 06:24:39,301] [Preprocessor.java:241] [main] Processing chromosome C31398 Processing chromosome C31398 INFO [2014-03-08 06:24:39,310] [Preprocessor.java:241] [main] Processing chromosome C31400 Processing chromosome C31400 INFO [2014-03-08 06:24:39,352] [Preprocessor.java:241] [main] Processing chromosome C31408 Processing chromosome C31408 INFO [2014-03-08 06:24:39,385] [Preprocessor.java:241] [main] Processing chromosome C31410 Processing chromosome C31410 INFO [2014-03-08 06:24:39,436] [Preprocessor.java:241] [main] Processing chromosome C31414 Processing chromosome C31414 INFO [2014-03-08 06:24:39,497] [Preprocessor.java:241] [main] Processing chromosome C31442 Processing chromosome C31442 INFO [2014-03-08 06:24:39,508] [Preprocessor.java:241] [main] Processing chromosome C31446 Processing chromosome C31446 INFO [2014-03-08 06:24:39,511] [Preprocessor.java:241] [main] Processing chromosome C3145 Processing chromosome C3145 INFO [2014-03-08 06:24:40,019] [Preprocessor.java:241] [main] Processing chromosome C31458 Processing chromosome C31458 INFO [2014-03-08 06:24:40,083] [Preprocessor.java:241] [main] Processing chromosome C31460 Processing chromosome C31460 INFO [2014-03-08 06:24:40,107] [Preprocessor.java:241] [main] Processing chromosome C31466 Processing chromosome C31466 INFO [2014-03-08 06:24:40,240] [Preprocessor.java:241] [main] Processing chromosome C31482 Processing chromosome C31482 INFO [2014-03-08 06:24:40,248] [Preprocessor.java:241] [main] Processing chromosome C31486 Processing chromosome C31486 INFO [2014-03-08 06:24:40,275] [Preprocessor.java:241] [main] Processing chromosome C31488 Processing chromosome C31488 INFO [2014-03-08 06:24:40,344] [Preprocessor.java:241] [main] Processing chromosome C31500 Processing chromosome C31500 INFO [2014-03-08 06:24:40,359] [Preprocessor.java:241] [main] Processing chromosome C31504 Processing chromosome C31504 INFO [2014-03-08 06:24:40,385] [Preprocessor.java:241] [main] Processing chromosome C3151 Processing chromosome C3151 INFO [2014-03-08 06:24:40,455] [Preprocessor.java:241] [main] Processing chromosome C31510 Processing chromosome C31510 INFO [2014-03-08 06:24:40,466] [Preprocessor.java:241] [main] Processing chromosome C31526 Processing chromosome C31526 INFO [2014-03-08 06:24:40,497] [Preprocessor.java:241] [main] Processing chromosome C3153 Processing chromosome C3153 INFO [2014-03-08 06:24:40,539] [Preprocessor.java:241] [main] Processing chromosome C31542 Processing chromosome C31542 INFO [2014-03-08 06:24:40,575] [Preprocessor.java:241] [main] Processing chromosome C31546 Processing chromosome C31546 INFO [2014-03-08 06:24:40,601] [Preprocessor.java:241] [main] Processing chromosome C31564 Processing chromosome C31564 INFO [2014-03-08 06:24:40,626] [Preprocessor.java:241] [main] Processing chromosome C31572 Processing chromosome C31572 INFO [2014-03-08 06:24:40,658] [Preprocessor.java:241] [main] Processing chromosome C31574 Processing chromosome C31574 INFO [2014-03-08 06:24:40,672] [Preprocessor.java:241] [main] Processing chromosome C31584 Processing chromosome C31584 INFO [2014-03-08 06:24:40,694] [Preprocessor.java:241] [main] Processing chromosome C31590 Processing chromosome C31590 INFO [2014-03-08 06:24:40,710] [Preprocessor.java:241] [main] Processing chromosome C31602 Processing chromosome C31602 INFO [2014-03-08 06:24:40,720] [Preprocessor.java:241] [main] Processing chromosome C31626 Processing chromosome C31626 INFO [2014-03-08 06:24:40,727] [Preprocessor.java:241] [main] Processing chromosome C31630 Processing chromosome C31630 INFO [2014-03-08 06:24:40,737] [Preprocessor.java:241] [main] Processing chromosome C31632 Processing chromosome C31632 INFO [2014-03-08 06:24:40,752] [Preprocessor.java:241] [main] Processing chromosome C31644 Processing chromosome C31644 INFO [2014-03-08 06:24:40,904] [Preprocessor.java:241] [main] Processing chromosome C31654 Processing chromosome C31654 INFO [2014-03-08 06:24:40,939] [Preprocessor.java:241] [main] Processing chromosome C31668 Processing chromosome C31668 INFO [2014-03-08 06:24:40,948] [Preprocessor.java:241] [main] Processing chromosome C31694 Processing chromosome C31694 INFO [2014-03-08 06:24:40,968] [Preprocessor.java:241] [main] Processing chromosome C31698 Processing chromosome C31698 INFO [2014-03-08 06:24:41,008] [Preprocessor.java:241] [main] Processing chromosome C31706 Processing chromosome C31706 INFO [2014-03-08 06:24:41,091] [Preprocessor.java:241] [main] Processing chromosome C31714 Processing chromosome C31714 INFO [2014-03-08 06:24:41,116] [Preprocessor.java:241] [main] Processing chromosome C31724 Processing chromosome C31724 INFO [2014-03-08 06:24:41,146] [Preprocessor.java:241] [main] Processing chromosome C31730 Processing chromosome C31730 INFO [2014-03-08 06:24:41,167] [Preprocessor.java:241] [main] Processing chromosome C31738 Processing chromosome C31738 INFO [2014-03-08 06:24:41,193] [Preprocessor.java:241] [main] Processing chromosome C31746 Processing chromosome C31746 INFO [2014-03-08 06:24:41,217] [Preprocessor.java:241] [main] Processing chromosome C31762 Processing chromosome C31762 INFO [2014-03-08 06:24:41,226] [Preprocessor.java:241] [main] Processing chromosome C31776 Processing chromosome C31776 INFO [2014-03-08 06:24:41,236] [Preprocessor.java:241] [main] Processing chromosome C31778 Processing chromosome C31778 INFO [2014-03-08 06:24:41,267] [Preprocessor.java:241] [main] Processing chromosome C3179 Processing chromosome C3179 INFO [2014-03-08 06:24:41,324] [Preprocessor.java:241] [main] Processing chromosome C31806 Processing chromosome C31806 INFO [2014-03-08 06:24:41,371] [Preprocessor.java:241] [main] Processing chromosome C31808 Processing chromosome C31808 INFO [2014-03-08 06:24:41,420] [Preprocessor.java:241] [main] Processing chromosome C31814 Processing chromosome C31814 INFO [2014-03-08 06:24:41,429] [Preprocessor.java:241] [main] Processing chromosome C31828 Processing chromosome C31828 INFO [2014-03-08 06:24:41,448] [Preprocessor.java:241] [main] Processing chromosome C3183 Processing chromosome C3183 INFO [2014-03-08 06:24:41,545] [Preprocessor.java:241] [main] Processing chromosome C31832 Processing chromosome C31832 INFO [2014-03-08 06:24:41,564] [Preprocessor.java:241] [main] Processing chromosome C31838 Processing chromosome C31838 INFO [2014-03-08 06:24:41,579] [Preprocessor.java:241] [main] Processing chromosome C31840 Processing chromosome C31840 INFO [2014-03-08 06:24:41,589] [Preprocessor.java:241] [main] Processing chromosome C31846 Processing chromosome C31846 INFO [2014-03-08 06:24:41,598] [Preprocessor.java:241] [main] Processing chromosome C31876 Processing chromosome C31876 INFO [2014-03-08 06:24:41,606] [Preprocessor.java:241] [main] Processing chromosome C31882 Processing chromosome C31882 INFO [2014-03-08 06:24:41,627] [Preprocessor.java:241] [main] Processing chromosome C31884 Processing chromosome C31884 INFO [2014-03-08 06:24:41,631] [Preprocessor.java:241] [main] Processing chromosome C31896 Processing chromosome C31896 INFO [2014-03-08 06:24:41,676] [Preprocessor.java:241] [main] Processing chromosome C31902 Processing chromosome C31902 INFO [2014-03-08 06:24:41,689] [Preprocessor.java:241] [main] Processing chromosome C31910 Processing chromosome C31910 INFO [2014-03-08 06:24:41,708] [Preprocessor.java:241] [main] Processing chromosome C31912 Processing chromosome C31912 INFO [2014-03-08 06:24:41,721] [Preprocessor.java:241] [main] Processing chromosome C31940 Processing chromosome C31940 INFO [2014-03-08 06:24:41,741] [Preprocessor.java:241] [main] Processing chromosome C31952 Processing chromosome C31952 INFO [2014-03-08 06:24:41,743] [Preprocessor.java:241] [main] Processing chromosome C31964 Processing chromosome C31964 INFO [2014-03-08 06:24:41,778] [Preprocessor.java:241] [main] Processing chromosome C3197 Processing chromosome C3197 INFO [2014-03-08 06:24:41,849] [Preprocessor.java:241] [main] Processing chromosome C31978 Processing chromosome C31978 INFO [2014-03-08 06:24:41,857] [Preprocessor.java:241] [main] Processing chromosome C31982 Processing chromosome C31982 INFO [2014-03-08 06:24:41,864] [Preprocessor.java:241] [main] Processing chromosome C31986 Processing chromosome C31986 INFO [2014-03-08 06:24:41,919] [Preprocessor.java:241] [main] Processing chromosome C31988 Processing chromosome C31988 INFO [2014-03-08 06:24:41,979] [Preprocessor.java:241] [main] Processing chromosome C31996 Processing chromosome C31996 INFO [2014-03-08 06:24:42,002] [Preprocessor.java:241] [main] Processing chromosome C32002 Processing chromosome C32002 INFO [2014-03-08 06:24:42,027] [Preprocessor.java:241] [main] Processing chromosome C32006 Processing chromosome C32006 INFO [2014-03-08 06:24:42,037] [Preprocessor.java:241] [main] Processing chromosome C32026 Processing chromosome C32026 INFO [2014-03-08 06:24:42,046] [Preprocessor.java:241] [main] Processing chromosome C32028 Processing chromosome C32028 INFO [2014-03-08 06:24:42,053] [Preprocessor.java:241] [main] Processing chromosome C32054 Processing chromosome C32054 INFO [2014-03-08 06:24:42,059] [Preprocessor.java:241] [main] Processing chromosome C32056 Processing chromosome C32056 INFO [2014-03-08 06:24:42,086] [Preprocessor.java:241] [main] Processing chromosome C32082 Processing chromosome C32082 INFO [2014-03-08 06:24:42,121] [Preprocessor.java:241] [main] Processing chromosome C32084 Processing chromosome C32084 INFO [2014-03-08 06:24:42,191] [Preprocessor.java:241] [main] Processing chromosome C32088 Processing chromosome C32088 INFO [2014-03-08 06:24:42,197] [Preprocessor.java:241] [main] Processing chromosome C32098 Processing chromosome C32098 INFO [2014-03-08 06:24:42,214] [Preprocessor.java:241] [main] Processing chromosome C32106 Processing chromosome C32106 INFO [2014-03-08 06:24:42,223] [Preprocessor.java:241] [main] Processing chromosome C32108 Processing chromosome C32108 INFO [2014-03-08 06:24:42,231] [Preprocessor.java:241] [main] Processing chromosome C32110 Processing chromosome C32110 INFO [2014-03-08 06:24:42,263] [Preprocessor.java:241] [main] Processing chromosome C32122 Processing chromosome C32122 INFO [2014-03-08 06:24:42,273] [Preprocessor.java:241] [main] Processing chromosome C32130 Processing chromosome C32130 INFO [2014-03-08 06:24:42,275] [Preprocessor.java:241] [main] Processing chromosome C32136 Processing chromosome C32136 INFO [2014-03-08 06:24:42,298] [Preprocessor.java:241] [main] Processing chromosome C32150 Processing chromosome C32150 INFO [2014-03-08 06:24:42,303] [Preprocessor.java:241] [main] Processing chromosome C32156 Processing chromosome C32156 INFO [2014-03-08 06:24:42,381] [Preprocessor.java:241] [main] Processing chromosome C32176 Processing chromosome C32176 INFO [2014-03-08 06:24:42,397] [Preprocessor.java:241] [main] Processing chromosome C32184 Processing chromosome C32184 INFO [2014-03-08 06:24:42,424] [Preprocessor.java:241] [main] Processing chromosome C32186 Processing chromosome C32186 INFO [2014-03-08 06:24:42,431] [Preprocessor.java:241] [main] Processing chromosome C32196 Processing chromosome C32196 INFO [2014-03-08 06:24:42,477] [Preprocessor.java:241] [main] Processing chromosome C32216 Processing chromosome C32216 INFO [2014-03-08 06:24:42,663] [Preprocessor.java:241] [main] Processing chromosome C32222 Processing chromosome C32222 INFO [2014-03-08 06:24:42,722] [Preprocessor.java:241] [main] Processing chromosome C32224 Processing chromosome C32224 INFO [2014-03-08 06:24:42,765] [Preprocessor.java:241] [main] Processing chromosome C32228 Processing chromosome C32228 INFO [2014-03-08 06:24:42,782] [Preprocessor.java:241] [main] Processing chromosome C32240 Processing chromosome C32240 INFO [2014-03-08 06:24:42,805] [Preprocessor.java:241] [main] Processing chromosome C32242 Processing chromosome C32242 INFO [2014-03-08 06:24:42,815] [Preprocessor.java:241] [main] Processing chromosome C32246 Processing chromosome C32246 INFO [2014-03-08 06:24:42,858] [Preprocessor.java:241] [main] Processing chromosome C32260 Processing chromosome C32260 INFO [2014-03-08 06:24:42,909] [Preprocessor.java:241] [main] Processing chromosome C32264 Processing chromosome C32264 INFO [2014-03-08 06:24:42,947] [Preprocessor.java:241] [main] Processing chromosome C32270 Processing chromosome C32270 INFO [2014-03-08 06:24:42,971] [Preprocessor.java:241] [main] Processing chromosome C32272 Processing chromosome C32272 INFO [2014-03-08 06:24:42,993] [Preprocessor.java:241] [main] Processing chromosome C32276 Processing chromosome C32276 INFO [2014-03-08 06:24:43,026] [Preprocessor.java:241] [main] Processing chromosome C32278 Processing chromosome C32278 INFO [2014-03-08 06:24:43,035] [Preprocessor.java:241] [main] Processing chromosome C32292 Processing chromosome C32292 INFO [2014-03-08 06:24:43,075] [Preprocessor.java:241] [main] Processing chromosome C3231 Processing chromosome C3231 INFO [2014-03-08 06:24:43,213] [Preprocessor.java:241] [main] Processing chromosome C32314 Processing chromosome C32314 INFO [2014-03-08 06:24:43,256] [Preprocessor.java:241] [main] Processing chromosome C32318 Processing chromosome C32318 INFO [2014-03-08 06:24:43,265] [Preprocessor.java:241] [main] Processing chromosome C32328 Processing chromosome C32328 INFO [2014-03-08 06:24:43,281] [Preprocessor.java:241] [main] Processing chromosome C32340 Processing chromosome C32340 INFO [2014-03-08 06:24:43,285] [Preprocessor.java:241] [main] Processing chromosome C32382 Processing chromosome C32382 INFO [2014-03-08 06:24:43,287] [Preprocessor.java:241] [main] Processing chromosome C32390 Processing chromosome C32390 INFO [2014-03-08 06:24:43,299] [Preprocessor.java:241] [main] Processing chromosome C32398 Processing chromosome C32398 INFO [2014-03-08 06:24:43,315] [Preprocessor.java:241] [main] Processing chromosome C32402 Processing chromosome C32402 INFO [2014-03-08 06:24:43,346] [Preprocessor.java:241] [main] Processing chromosome C32406 Processing chromosome C32406 INFO [2014-03-08 06:24:43,377] [Preprocessor.java:241] [main] Processing chromosome C32424 Processing chromosome C32424 INFO [2014-03-08 06:24:43,431] [Preprocessor.java:241] [main] Processing chromosome C32426 Processing chromosome C32426 INFO [2014-03-08 06:24:43,474] [Preprocessor.java:241] [main] Processing chromosome C32438 Processing chromosome C32438 INFO [2014-03-08 06:24:43,488] [Preprocessor.java:241] [main] Processing chromosome C32444 Processing chromosome C32444 INFO [2014-03-08 06:24:43,532] [Preprocessor.java:241] [main] Processing chromosome C32458 Processing chromosome C32458 INFO [2014-03-08 06:24:43,536] [Preprocessor.java:241] [main] Processing chromosome C32468 Processing chromosome C32468 INFO [2014-03-08 06:24:43,599] [Preprocessor.java:241] [main] Processing chromosome C32472 Processing chromosome C32472 INFO [2014-03-08 06:24:43,624] [Preprocessor.java:241] [main] Processing chromosome C32482 Processing chromosome C32482 INFO [2014-03-08 06:24:43,654] [Preprocessor.java:241] [main] Processing chromosome C32484 Processing chromosome C32484 INFO [2014-03-08 06:24:43,691] [Preprocessor.java:241] [main] Processing chromosome C3249 Processing chromosome C3249 INFO [2014-03-08 06:24:43,764] [Preprocessor.java:241] [main] Processing chromosome C32512 Processing chromosome C32512 INFO [2014-03-08 06:24:43,811] [Preprocessor.java:241] [main] Processing chromosome C32516 Processing chromosome C32516 INFO [2014-03-08 06:24:43,828] [Preprocessor.java:241] [main] Processing chromosome C32532 Processing chromosome C32532 INFO [2014-03-08 06:24:43,855] [Preprocessor.java:241] [main] Processing chromosome C32536 Processing chromosome C32536 INFO [2014-03-08 06:24:43,874] [Preprocessor.java:241] [main] Processing chromosome C32542 Processing chromosome C32542 INFO [2014-03-08 06:24:43,897] [Preprocessor.java:241] [main] Processing chromosome C32552 Processing chromosome C32552 INFO [2014-03-08 06:24:43,936] [Preprocessor.java:241] [main] Processing chromosome C32554 Processing chromosome C32554 INFO [2014-03-08 06:24:43,959] [Preprocessor.java:241] [main] Processing chromosome C32568 Processing chromosome C32568 INFO [2014-03-08 06:24:43,988] [Preprocessor.java:241] [main] Processing chromosome C32576 Processing chromosome C32576 INFO [2014-03-08 06:24:44,007] [Preprocessor.java:241] [main] Processing chromosome C32578 Processing chromosome C32578 INFO [2014-03-08 06:24:44,029] [Preprocessor.java:241] [main] Processing chromosome C32582 Processing chromosome C32582 INFO [2014-03-08 06:24:44,033] [Preprocessor.java:241] [main] Processing chromosome C32596 Processing chromosome C32596 INFO [2014-03-08 06:24:44,063] [Preprocessor.java:241] [main] Processing chromosome C32606 Processing chromosome C32606 INFO [2014-03-08 06:24:44,097] [Preprocessor.java:241] [main] Processing chromosome C3261 Processing chromosome C3261 INFO [2014-03-08 06:24:44,229] [Preprocessor.java:241] [main] Processing chromosome C32614 Processing chromosome C32614 INFO [2014-03-08 06:24:44,252] [Preprocessor.java:241] [main] Processing chromosome C32636 Processing chromosome C32636 INFO [2014-03-08 06:24:44,297] [Preprocessor.java:241] [main] Processing chromosome C32644 Processing chromosome C32644 INFO [2014-03-08 06:24:44,311] [Preprocessor.java:241] [main] Processing chromosome C32654 Processing chromosome C32654 INFO [2014-03-08 06:24:44,358] [Preprocessor.java:241] [main] Processing chromosome C32656 Processing chromosome C32656 INFO [2014-03-08 06:24:44,430] [Preprocessor.java:241] [main] Processing chromosome C32660 Processing chromosome C32660 INFO [2014-03-08 06:24:44,479] [Preprocessor.java:241] [main] Processing chromosome C32674 Processing chromosome C32674 INFO [2014-03-08 06:24:44,487] [Preprocessor.java:241] [main] Processing chromosome C32682 Processing chromosome C32682 INFO [2014-03-08 06:24:44,501] [Preprocessor.java:241] [main] Processing chromosome C32694 Processing chromosome C32694 INFO [2014-03-08 06:24:44,517] [Preprocessor.java:241] [main] Processing chromosome C32714 Processing chromosome C32714 INFO [2014-03-08 06:24:44,564] [Preprocessor.java:241] [main] Processing chromosome C32728 Processing chromosome C32728 INFO [2014-03-08 06:24:44,573] [Preprocessor.java:241] [main] Processing chromosome C32748 Processing chromosome C32748 INFO [2014-03-08 06:24:44,578] [Preprocessor.java:241] [main] Processing chromosome C32772 Processing chromosome C32772 INFO [2014-03-08 06:24:44,580] [Preprocessor.java:241] [main] Processing chromosome C32774 Processing chromosome C32774 INFO [2014-03-08 06:24:44,613] [Preprocessor.java:241] [main] Processing chromosome C32778 Processing chromosome C32778 INFO [2014-03-08 06:24:44,621] [Preprocessor.java:241] [main] Processing chromosome C32794 Processing chromosome C32794 INFO [2014-03-08 06:24:44,625] [Preprocessor.java:241] [main] Processing chromosome C32810 Processing chromosome C32810 INFO [2014-03-08 06:24:44,645] [Preprocessor.java:241] [main] Processing chromosome C32812 Processing chromosome C32812 INFO [2014-03-08 06:24:44,665] [Preprocessor.java:241] [main] Processing chromosome C32814 Processing chromosome C32814 INFO [2014-03-08 06:24:44,707] [Preprocessor.java:241] [main] Processing chromosome C32818 Processing chromosome C32818 INFO [2014-03-08 06:24:44,714] [Preprocessor.java:241] [main] Processing chromosome C32838 Processing chromosome C32838 INFO [2014-03-08 06:24:44,720] [Preprocessor.java:241] [main] Processing chromosome C32842 Processing chromosome C32842 INFO [2014-03-08 06:24:44,737] [Preprocessor.java:241] [main] Processing chromosome C32848 Processing chromosome C32848 INFO [2014-03-08 06:24:44,760] [Preprocessor.java:241] [main] Processing chromosome C32884 Processing chromosome C32884 INFO [2014-03-08 06:24:44,784] [Preprocessor.java:241] [main] Processing chromosome C32888 Processing chromosome C32888 INFO [2014-03-08 06:24:44,793] [Preprocessor.java:241] [main] Processing chromosome C32906 Processing chromosome C32906 INFO [2014-03-08 06:24:44,808] [Preprocessor.java:241] [main] Processing chromosome C32914 Processing chromosome C32914 INFO [2014-03-08 06:24:44,814] [Preprocessor.java:241] [main] Processing chromosome C32918 Processing chromosome C32918 INFO [2014-03-08 06:24:44,824] [Preprocessor.java:241] [main] Processing chromosome C32930 Processing chromosome C32930 INFO [2014-03-08 06:24:44,874] [Preprocessor.java:241] [main] Processing chromosome C32966 Processing chromosome C32966 INFO [2014-03-08 06:24:44,882] [Preprocessor.java:241] [main] Processing chromosome C32974 Processing chromosome C32974 INFO [2014-03-08 06:24:44,887] [Preprocessor.java:241] [main] Processing chromosome C32984 Processing chromosome C32984 INFO [2014-03-08 06:24:44,906] [Preprocessor.java:241] [main] Processing chromosome C32986 Processing chromosome C32986 INFO [2014-03-08 06:24:44,927] [Preprocessor.java:241] [main] Processing chromosome C32992 Processing chromosome C32992 INFO [2014-03-08 06:24:44,956] [Preprocessor.java:241] [main] Processing chromosome C32994 Processing chromosome C32994 INFO [2014-03-08 06:24:44,985] [Preprocessor.java:241] [main] Processing chromosome C33024 Processing chromosome C33024 INFO [2014-03-08 06:24:44,992] [Preprocessor.java:241] [main] Processing chromosome C33038 Processing chromosome C33038 INFO [2014-03-08 06:24:45,003] [Preprocessor.java:241] [main] Processing chromosome C33084 Processing chromosome C33084 INFO [2014-03-08 06:24:45,027] [Preprocessor.java:241] [main] Processing chromosome C33102 Processing chromosome C33102 INFO [2014-03-08 06:24:45,258] [Preprocessor.java:241] [main] Processing chromosome C33126 Processing chromosome C33126 INFO [2014-03-08 06:24:45,271] [Preprocessor.java:241] [main] Processing chromosome C33128 Processing chromosome C33128 INFO [2014-03-08 06:24:45,320] [Preprocessor.java:241] [main] Processing chromosome C33136 Processing chromosome C33136 INFO [2014-03-08 06:24:45,353] [Preprocessor.java:241] [main] Processing chromosome C33148 Processing chromosome C33148 INFO [2014-03-08 06:24:45,391] [Preprocessor.java:241] [main] Processing chromosome C33162 Processing chromosome C33162 INFO [2014-03-08 06:24:45,396] [Preprocessor.java:241] [main] Processing chromosome C33172 Processing chromosome C33172 INFO [2014-03-08 06:24:45,414] [Preprocessor.java:241] [main] Processing chromosome C33174 Processing chromosome C33174 INFO [2014-03-08 06:24:45,420] [Preprocessor.java:241] [main] Processing chromosome C33182 Processing chromosome C33182 INFO [2014-03-08 06:24:45,428] [Preprocessor.java:241] [main] Processing chromosome C33188 Processing chromosome C33188 INFO [2014-03-08 06:24:45,440] [Preprocessor.java:241] [main] Processing chromosome C33200 Processing chromosome C33200 INFO [2014-03-08 06:24:45,464] [Preprocessor.java:241] [main] Processing chromosome C33204 Processing chromosome C33204 INFO [2014-03-08 06:24:45,478] [Preprocessor.java:241] [main] Processing chromosome C33220 Processing chromosome C33220 INFO [2014-03-08 06:24:45,512] [Preprocessor.java:241] [main] Processing chromosome C33222 Processing chromosome C33222 INFO [2014-03-08 06:24:45,519] [Preprocessor.java:241] [main] Processing chromosome C33230 Processing chromosome C33230 INFO [2014-03-08 06:24:45,553] [Preprocessor.java:241] [main] Processing chromosome C33236 Processing chromosome C33236 INFO [2014-03-08 06:24:45,580] [Preprocessor.java:241] [main] Processing chromosome C33244 Processing chromosome C33244 INFO [2014-03-08 06:24:45,609] [Preprocessor.java:241] [main] Processing chromosome C33256 Processing chromosome C33256 INFO [2014-03-08 06:24:45,647] [Preprocessor.java:241] [main] Processing chromosome C33260 Processing chromosome C33260 INFO [2014-03-08 06:24:45,675] [Preprocessor.java:241] [main] Processing chromosome C33308 Processing chromosome C33308 INFO [2014-03-08 06:24:45,709] [Preprocessor.java:241] [main] Processing chromosome C33310 Processing chromosome C33310 INFO [2014-03-08 06:24:45,733] [Preprocessor.java:241] [main] Processing chromosome C33320 Processing chromosome C33320 INFO [2014-03-08 06:24:45,751] [Preprocessor.java:241] [main] Processing chromosome C33332 Processing chromosome C33332 INFO [2014-03-08 06:24:45,758] [Preprocessor.java:241] [main] Processing chromosome C33368 Processing chromosome C33368 INFO [2014-03-08 06:24:45,787] [Preprocessor.java:241] [main] Processing chromosome C33378 Processing chromosome C33378 INFO [2014-03-08 06:24:45,809] [Preprocessor.java:241] [main] Processing chromosome C33408 Processing chromosome C33408 INFO [2014-03-08 06:24:45,831] [Preprocessor.java:241] [main] Processing chromosome C33436 Processing chromosome C33436 INFO [2014-03-08 06:24:45,850] [Preprocessor.java:241] [main] Processing chromosome C33442 Processing chromosome C33442 INFO [2014-03-08 06:24:45,879] [Preprocessor.java:241] [main] Processing chromosome C3345 Processing chromosome C3345 INFO [2014-03-08 06:24:45,921] [Preprocessor.java:241] [main] Processing chromosome C33464 Processing chromosome C33464 INFO [2014-03-08 06:24:45,986] [Preprocessor.java:241] [main] Processing chromosome C33472 Processing chromosome C33472 INFO [2014-03-08 06:24:46,011] [Preprocessor.java:241] [main] Processing chromosome C33478 Processing chromosome C33478 INFO [2014-03-08 06:24:46,038] [Preprocessor.java:241] [main] Processing chromosome C33482 Processing chromosome C33482 INFO [2014-03-08 06:24:46,045] [Preprocessor.java:241] [main] Processing chromosome C33496 Processing chromosome C33496 INFO [2014-03-08 06:24:46,047] [Preprocessor.java:241] [main] Processing chromosome C33510 Processing chromosome C33510 INFO [2014-03-08 06:24:46,086] [Preprocessor.java:241] [main] Processing chromosome C33524 Processing chromosome C33524 INFO [2014-03-08 06:24:46,107] [Preprocessor.java:241] [main] Processing chromosome C33534 Processing chromosome C33534 INFO [2014-03-08 06:24:46,122] [Preprocessor.java:241] [main] Processing chromosome C33560 Processing chromosome C33560 INFO [2014-03-08 06:24:46,128] [Preprocessor.java:241] [main] Processing chromosome C33576 Processing chromosome C33576 INFO [2014-03-08 06:24:46,139] [Preprocessor.java:241] [main] Processing chromosome C33580 Processing chromosome C33580 INFO [2014-03-08 06:24:46,161] [Preprocessor.java:241] [main] Processing chromosome C33592 Processing chromosome C33592 INFO [2014-03-08 06:24:46,197] [Preprocessor.java:241] [main] Processing chromosome C3361 Processing chromosome C3361 INFO [2014-03-08 06:24:46,260] [Preprocessor.java:241] [main] Processing chromosome C33614 Processing chromosome C33614 INFO [2014-03-08 06:24:46,269] [Preprocessor.java:241] [main] Processing chromosome C33646 Processing chromosome C33646 INFO [2014-03-08 06:24:46,290] [Preprocessor.java:241] [main] Processing chromosome C33654 Processing chromosome C33654 INFO [2014-03-08 06:24:46,309] [Preprocessor.java:241] [main] Processing chromosome C33658 Processing chromosome C33658 INFO [2014-03-08 06:24:46,331] [Preprocessor.java:241] [main] Processing chromosome C33664 Processing chromosome C33664 INFO [2014-03-08 06:24:46,383] [Preprocessor.java:241] [main] Processing chromosome C33666 Processing chromosome C33666 INFO [2014-03-08 06:24:46,412] [Preprocessor.java:241] [main] Processing chromosome C33688 Processing chromosome C33688 INFO [2014-03-08 06:24:46,452] [Preprocessor.java:241] [main] Processing chromosome C33708 Processing chromosome C33708 INFO [2014-03-08 06:24:46,496] [Preprocessor.java:241] [main] Processing chromosome C33730 Processing chromosome C33730 INFO [2014-03-08 06:24:46,517] [Preprocessor.java:241] [main] Processing chromosome C33734 Processing chromosome C33734 INFO [2014-03-08 06:24:46,544] [Preprocessor.java:241] [main] Processing chromosome C33748 Processing chromosome C33748 INFO [2014-03-08 06:24:46,584] [Preprocessor.java:241] [main] Processing chromosome C33762 Processing chromosome C33762 INFO [2014-03-08 06:24:46,611] [Preprocessor.java:241] [main] Processing chromosome C33776 Processing chromosome C33776 INFO [2014-03-08 06:24:46,622] [Preprocessor.java:241] [main] Processing chromosome C33812 Processing chromosome C33812 INFO [2014-03-08 06:24:46,649] [Preprocessor.java:241] [main] Processing chromosome C33864 Processing chromosome C33864 INFO [2014-03-08 06:24:46,674] [Preprocessor.java:241] [main] Processing chromosome C33892 Processing chromosome C33892 INFO [2014-03-08 06:24:46,697] [Preprocessor.java:241] [main] Processing chromosome C33918 Processing chromosome C33918 INFO [2014-03-08 06:24:46,712] [Preprocessor.java:241] [main] Processing chromosome C33952 Processing chromosome C33952 INFO [2014-03-08 06:24:46,745] [Preprocessor.java:241] [main] Processing chromosome C34010 Processing chromosome C34010 INFO [2014-03-08 06:24:46,792] [Preprocessor.java:241] [main] Processing chromosome C34066 Processing chromosome C34066 INFO [2014-03-08 06:24:46,823] [Preprocessor.java:241] [main] Processing chromosome C3407 Processing chromosome C3407 INFO [2014-03-08 06:24:46,891] [Preprocessor.java:241] [main] Processing chromosome C34072 Processing chromosome C34072 INFO [2014-03-08 06:24:46,911] [Preprocessor.java:241] [main] Processing chromosome C34104 Processing chromosome C34104 INFO [2014-03-08 06:24:46,923] [Preprocessor.java:241] [main] Processing chromosome C34110 Processing chromosome C34110 INFO [2014-03-08 06:24:46,941] [Preprocessor.java:241] [main] Processing chromosome C34112 Processing chromosome C34112 INFO [2014-03-08 06:24:46,945] [Preprocessor.java:241] [main] Processing chromosome C34116 Processing chromosome C34116 INFO [2014-03-08 06:24:46,952] [Preprocessor.java:241] [main] Processing chromosome C34120 Processing chromosome C34120 INFO [2014-03-08 06:24:46,959] [Preprocessor.java:241] [main] Processing chromosome C34122 Processing chromosome C34122 INFO [2014-03-08 06:24:46,977] [Preprocessor.java:241] [main] Processing chromosome C34136 Processing chromosome C34136 INFO [2014-03-08 06:24:47,003] [Preprocessor.java:241] [main] Processing chromosome C3415 Processing chromosome C3415 INFO [2014-03-08 06:24:47,036] [Preprocessor.java:241] [main] Processing chromosome C34158 Processing chromosome C34158 INFO [2014-03-08 06:24:47,108] [Preprocessor.java:241] [main] Processing chromosome C34160 Processing chromosome C34160 INFO [2014-03-08 06:24:47,159] [Preprocessor.java:241] [main] Processing chromosome C34166 Processing chromosome C34166 INFO [2014-03-08 06:24:47,191] [Preprocessor.java:241] [main] Processing chromosome C34174 Processing chromosome C34174 INFO [2014-03-08 06:24:47,210] [Preprocessor.java:241] [main] Processing chromosome C34176 Processing chromosome C34176 INFO [2014-03-08 06:24:47,236] [Preprocessor.java:241] [main] Processing chromosome C3419 Processing chromosome C3419 INFO [2014-03-08 06:24:47,275] [Preprocessor.java:241] [main] Processing chromosome C34200 Processing chromosome C34200 INFO [2014-03-08 06:24:47,317] [Preprocessor.java:241] [main] Processing chromosome C34208 Processing chromosome C34208 INFO [2014-03-08 06:24:47,336] [Preprocessor.java:241] [main] Processing chromosome C34218 Processing chromosome C34218 INFO [2014-03-08 06:24:47,353] [Preprocessor.java:241] [main] Processing chromosome C34226 Processing chromosome C34226 INFO [2014-03-08 06:24:47,370] [Preprocessor.java:241] [main] Processing chromosome C34250 Processing chromosome C34250 INFO [2014-03-08 06:24:47,388] [Preprocessor.java:241] [main] Processing chromosome C34256 Processing chromosome C34256 INFO [2014-03-08 06:24:47,429] [Preprocessor.java:241] [main] Processing chromosome C34270 Processing chromosome C34270 INFO [2014-03-08 06:24:47,464] [Preprocessor.java:241] [main] Processing chromosome C34272 Processing chromosome C34272 INFO [2014-03-08 06:24:47,470] [Preprocessor.java:241] [main] Processing chromosome C34274 Processing chromosome C34274 INFO [2014-03-08 06:24:47,544] [Preprocessor.java:241] [main] Processing chromosome C34286 Processing chromosome C34286 INFO [2014-03-08 06:24:47,576] [Preprocessor.java:241] [main] Processing chromosome C34288 Processing chromosome C34288 INFO [2014-03-08 06:24:47,583] [Preprocessor.java:241] [main] Processing chromosome C34300 Processing chromosome C34300 INFO [2014-03-08 06:24:47,602] [Preprocessor.java:241] [main] Processing chromosome C34310 Processing chromosome C34310 INFO [2014-03-08 06:24:47,619] [Preprocessor.java:241] [main] Processing chromosome C34320 Processing chromosome C34320 INFO [2014-03-08 06:24:47,649] [Preprocessor.java:241] [main] Processing chromosome C34340 Processing chromosome C34340 INFO [2014-03-08 06:24:47,691] [Preprocessor.java:241] [main] Processing chromosome C34372 Processing chromosome C34372 INFO [2014-03-08 06:24:47,709] [Preprocessor.java:241] [main] Processing chromosome C34402 Processing chromosome C34402 INFO [2014-03-08 06:24:47,723] [Preprocessor.java:241] [main] Processing chromosome C34406 Processing chromosome C34406 INFO [2014-03-08 06:24:47,737] [Preprocessor.java:241] [main] Processing chromosome C34408 Processing chromosome C34408 INFO [2014-03-08 06:24:47,743] [Preprocessor.java:241] [main] Processing chromosome C34418 Processing chromosome C34418 INFO [2014-03-08 06:24:47,769] [Preprocessor.java:241] [main] Processing chromosome C3443 Processing chromosome C3443 INFO [2014-03-08 06:24:47,810] [Preprocessor.java:241] [main] Processing chromosome C34436 Processing chromosome C34436 INFO [2014-03-08 06:24:47,861] [Preprocessor.java:241] [main] Processing chromosome C34444 Processing chromosome C34444 INFO [2014-03-08 06:24:47,886] [Preprocessor.java:241] [main] Processing chromosome C34458 Processing chromosome C34458 INFO [2014-03-08 06:24:47,906] [Preprocessor.java:241] [main] Processing chromosome C34464 Processing chromosome C34464 INFO [2014-03-08 06:24:47,935] [Preprocessor.java:241] [main] Processing chromosome C34466 Processing chromosome C34466 INFO [2014-03-08 06:24:47,948] [Preprocessor.java:241] [main] Processing chromosome C34488 Processing chromosome C34488 INFO [2014-03-08 06:24:47,974] [Preprocessor.java:241] [main] Processing chromosome C34496 Processing chromosome C34496 INFO [2014-03-08 06:24:47,980] [Preprocessor.java:241] [main] Processing chromosome C34516 Processing chromosome C34516 INFO [2014-03-08 06:24:47,988] [Preprocessor.java:241] [main] Processing chromosome C34546 Processing chromosome C34546 INFO [2014-03-08 06:24:48,021] [Preprocessor.java:241] [main] Processing chromosome C34550 Processing chromosome C34550 INFO [2014-03-08 06:24:48,066] [Preprocessor.java:241] [main] Processing chromosome C34552 Processing chromosome C34552 INFO [2014-03-08 06:24:48,109] [Preprocessor.java:241] [main] Processing chromosome C34556 Processing chromosome C34556 INFO [2014-03-08 06:24:48,149] [Preprocessor.java:241] [main] Processing chromosome C34562 Processing chromosome C34562 INFO [2014-03-08 06:24:48,165] [Preprocessor.java:241] [main] Processing chromosome C34564 Processing chromosome C34564 INFO [2014-03-08 06:24:48,177] [Preprocessor.java:241] [main] Processing chromosome C34566 Processing chromosome C34566 INFO [2014-03-08 06:24:48,185] [Preprocessor.java:241] [main] Processing chromosome C34600 Processing chromosome C34600 INFO [2014-03-08 06:24:48,233] [Preprocessor.java:241] [main] Processing chromosome C34622 Processing chromosome C34622 INFO [2014-03-08 06:24:48,256] [Preprocessor.java:241] [main] Processing chromosome C34630 Processing chromosome C34630 INFO [2014-03-08 06:24:48,317] [Preprocessor.java:241] [main] Processing chromosome C34634 Processing chromosome C34634 INFO [2014-03-08 06:24:48,326] [Preprocessor.java:241] [main] Processing chromosome C34636 Processing chromosome C34636 INFO [2014-03-08 06:24:48,347] [Preprocessor.java:241] [main] Processing chromosome C34708 Processing chromosome C34708 INFO [2014-03-08 06:24:48,363] [Preprocessor.java:241] [main] Processing chromosome C34712 Processing chromosome C34712 INFO [2014-03-08 06:24:48,447] [Preprocessor.java:241] [main] Processing chromosome C34726 Processing chromosome C34726 INFO [2014-03-08 06:24:48,463] [Preprocessor.java:241] [main] Processing chromosome C34792 Processing chromosome C34792 INFO [2014-03-08 06:24:48,514] [Preprocessor.java:241] [main] Processing chromosome C34798 Processing chromosome C34798 INFO [2014-03-08 06:24:48,542] [Preprocessor.java:241] [main] Processing chromosome C34804 Processing chromosome C34804 INFO [2014-03-08 06:24:48,551] [Preprocessor.java:241] [main] Processing chromosome C34846 Processing chromosome C34846 INFO [2014-03-08 06:24:48,556] [Preprocessor.java:241] [main] Processing chromosome C34856 Processing chromosome C34856 INFO [2014-03-08 06:24:48,573] [Preprocessor.java:241] [main] Processing chromosome C34876 Processing chromosome C34876 INFO [2014-03-08 06:24:48,601] [Preprocessor.java:241] [main] Processing chromosome C34884 Processing chromosome C34884 INFO [2014-03-08 06:24:48,619] [Preprocessor.java:241] [main] Processing chromosome C349 Processing chromosome C349 INFO [2014-03-08 06:24:48,696] [Preprocessor.java:241] [main] Processing chromosome C34902 Processing chromosome C34902 INFO [2014-03-08 06:24:48,742] [Preprocessor.java:241] [main] Processing chromosome C34948 Processing chromosome C34948 INFO [2014-03-08 06:24:48,778] [Preprocessor.java:241] [main] Processing chromosome C35006 Processing chromosome C35006 INFO [2014-03-08 06:24:48,818] [Preprocessor.java:241] [main] Processing chromosome C35028 Processing chromosome C35028 INFO [2014-03-08 06:24:48,876] [Preprocessor.java:241] [main] Processing chromosome C35042 Processing chromosome C35042 INFO [2014-03-08 06:24:48,919] [Preprocessor.java:241] [main] Processing chromosome C35068 Processing chromosome C35068 INFO [2014-03-08 06:24:48,933] [Preprocessor.java:241] [main] Processing chromosome C35134 Processing chromosome C35134 INFO [2014-03-08 06:24:48,952] [Preprocessor.java:241] [main] Processing chromosome C35160 Processing chromosome C35160 INFO [2014-03-08 06:24:48,957] [Preprocessor.java:241] [main] Processing chromosome C35168 Processing chromosome C35168 INFO [2014-03-08 06:24:49,014] [Preprocessor.java:241] [main] Processing chromosome C35172 Processing chromosome C35172 INFO [2014-03-08 06:24:49,089] [Preprocessor.java:241] [main] Processing chromosome C35260 Processing chromosome C35260 INFO [2014-03-08 06:24:49,129] [Preprocessor.java:241] [main] Processing chromosome C35262 Processing chromosome C35262 INFO [2014-03-08 06:24:49,249] [Preprocessor.java:241] [main] Processing chromosome C35282 Processing chromosome C35282 INFO [2014-03-08 06:24:49,299] [Preprocessor.java:241] [main] Processing chromosome C35386 Processing chromosome C35386 INFO [2014-03-08 06:24:49,346] [Preprocessor.java:241] [main] Processing chromosome C35400 Processing chromosome C35400 INFO [2014-03-08 06:24:49,427] [Preprocessor.java:241] [main] Processing chromosome C35502 Processing chromosome C35502 INFO [2014-03-08 06:24:49,431] [Preprocessor.java:241] [main] Processing chromosome C3553 Processing chromosome C3553 INFO [2014-03-08 06:24:49,512] [Preprocessor.java:241] [main] Processing chromosome C35532 Processing chromosome C35532 INFO [2014-03-08 06:24:49,581] [Preprocessor.java:241] [main] Processing chromosome C35548 Processing chromosome C35548 INFO [2014-03-08 06:24:49,626] [Preprocessor.java:241] [main] Processing chromosome C35556 Processing chromosome C35556 INFO [2014-03-08 06:24:49,747] [Preprocessor.java:241] [main] Processing chromosome C35564 Processing chromosome C35564 INFO [2014-03-08 06:24:49,779] [Preprocessor.java:241] [main] Processing chromosome C35606 Processing chromosome C35606 INFO [2014-03-08 06:24:49,786] [Preprocessor.java:241] [main] Processing chromosome C35642 Processing chromosome C35642 INFO [2014-03-08 06:24:49,796] [Preprocessor.java:241] [main] Processing chromosome C35646 Processing chromosome C35646 INFO [2014-03-08 06:24:49,828] [Preprocessor.java:241] [main] Processing chromosome C35716 Processing chromosome C35716 INFO [2014-03-08 06:24:49,846] [Preprocessor.java:241] [main] Processing chromosome C35760 Processing chromosome C35760 INFO [2014-03-08 06:24:49,887] [Preprocessor.java:241] [main] Processing chromosome C3577 Processing chromosome C3577 INFO [2014-03-08 06:24:50,034] [Preprocessor.java:241] [main] Processing chromosome C35776 Processing chromosome C35776 INFO [2014-03-08 06:24:50,105] [Preprocessor.java:241] [main] Processing chromosome C35786 Processing chromosome C35786 INFO [2014-03-08 06:24:50,134] [Preprocessor.java:241] [main] Processing chromosome C3579 Processing chromosome C3579 INFO [2014-03-08 06:24:50,179] [Preprocessor.java:241] [main] Processing chromosome C35794 Processing chromosome C35794 INFO [2014-03-08 06:24:50,240] [Preprocessor.java:241] [main] Processing chromosome C35840 Processing chromosome C35840 INFO [2014-03-08 06:24:50,273] [Preprocessor.java:241] [main] Processing chromosome C35844 Processing chromosome C35844 INFO [2014-03-08 06:24:50,314] [Preprocessor.java:241] [main] Processing chromosome C35952 Processing chromosome C35952 INFO [2014-03-08 06:24:50,330] [Preprocessor.java:241] [main] Processing chromosome C35992 Processing chromosome C35992 INFO [2014-03-08 06:24:50,383] [Preprocessor.java:241] [main] Processing chromosome C36014 Processing chromosome C36014 INFO [2014-03-08 06:24:50,434] [Preprocessor.java:241] [main] Processing chromosome C36028 Processing chromosome C36028 INFO [2014-03-08 06:24:50,474] [Preprocessor.java:241] [main] Processing chromosome C36038 Processing chromosome C36038 INFO [2014-03-08 06:24:50,516] [Preprocessor.java:241] [main] Processing chromosome C361 Processing chromosome C361 INFO [2014-03-08 06:24:50,632] [Preprocessor.java:241] [main] Processing chromosome C36172 Processing chromosome C36172 INFO [2014-03-08 06:24:50,700] [Preprocessor.java:241] [main] Processing chromosome C3627 Processing chromosome C3627 INFO [2014-03-08 06:24:50,773] [Preprocessor.java:241] [main] Processing chromosome C363 Processing chromosome C363 INFO [2014-03-08 06:24:50,856] [Preprocessor.java:241] [main] Processing chromosome C36322 Processing chromosome C36322 INFO [2014-03-08 06:24:50,904] [Preprocessor.java:241] [main] Processing chromosome C3645 Processing chromosome C3645 INFO [2014-03-08 06:24:50,975] [Preprocessor.java:241] [main] Processing chromosome C3647 Processing chromosome C3647 INFO [2014-03-08 06:24:51,103] [Preprocessor.java:241] [main] Processing chromosome C365 Processing chromosome C365 INFO [2014-03-08 06:24:51,159] [Preprocessor.java:241] [main] Processing chromosome C3655 Processing chromosome C3655 INFO [2014-03-08 06:24:51,219] [Preprocessor.java:241] [main] Processing chromosome C36636 Processing chromosome C36636 INFO [2014-03-08 06:24:51,290] [Preprocessor.java:241] [main] Processing chromosome C36680 Processing chromosome C36680 INFO [2014-03-08 06:24:51,324] [Preprocessor.java:241] [main] Processing chromosome C37024 Processing chromosome C37024 INFO [2014-03-08 06:24:51,420] [Preprocessor.java:241] [main] Processing chromosome C371 Processing chromosome C371 INFO [2014-03-08 06:24:51,500] [Preprocessor.java:241] [main] Processing chromosome C3721 Processing chromosome C3721 INFO [2014-03-08 06:24:51,537] [Preprocessor.java:241] [main] Processing chromosome C3725 Processing chromosome C3725 INFO [2014-03-08 06:24:51,634] [Preprocessor.java:241] [main] Processing chromosome C37392 Processing chromosome C37392 INFO [2014-03-08 06:24:51,698] [Preprocessor.java:241] [main] Processing chromosome C375 Processing chromosome C375 INFO [2014-03-08 06:24:51,763] [Preprocessor.java:241] [main] Processing chromosome C377 Processing chromosome C377 INFO [2014-03-08 06:24:51,818] [Preprocessor.java:241] [main] Processing chromosome C381 Processing chromosome C381 INFO [2014-03-08 06:24:51,914] [Preprocessor.java:241] [main] Processing chromosome C3823 Processing chromosome C3823 INFO [2014-03-08 06:24:52,037] [Preprocessor.java:241] [main] Processing chromosome C3835 Processing chromosome C3835 INFO [2014-03-08 06:24:52,181] [Preprocessor.java:241] [main] Processing chromosome C3851 Processing chromosome C3851 INFO [2014-03-08 06:24:52,276] [Preprocessor.java:241] [main] Processing chromosome C3863 Processing chromosome C3863 INFO [2014-03-08 06:24:52,354] [Preprocessor.java:241] [main] Processing chromosome C3873 Processing chromosome C3873 INFO [2014-03-08 06:24:52,444] [Preprocessor.java:241] [main] Processing chromosome C3911 Processing chromosome C3911 INFO [2014-03-08 06:24:52,539] [Preprocessor.java:241] [main] Processing chromosome C3915 Processing chromosome C3915 INFO [2014-03-08 06:24:52,585] [Preprocessor.java:241] [main] Processing chromosome C3965 Processing chromosome C3965 INFO [2014-03-08 06:24:52,653] [Preprocessor.java:241] [main] Processing chromosome C4017 Processing chromosome C4017 INFO [2014-03-08 06:24:52,715] [Preprocessor.java:241] [main] Processing chromosome C4021 Processing chromosome C4021 INFO [2014-03-08 06:24:52,784] [Preprocessor.java:241] [main] Processing chromosome C4037 Processing chromosome C4037 INFO [2014-03-08 06:24:52,878] [Preprocessor.java:241] [main] Processing chromosome C4057 Processing chromosome C4057 INFO [2014-03-08 06:24:52,920] [Preprocessor.java:241] [main] Processing chromosome C415 Processing chromosome C415 INFO [2014-03-08 06:24:52,985] [Preprocessor.java:241] [main] Processing chromosome C4243 Processing chromosome C4243 INFO [2014-03-08 06:24:53,073] [Preprocessor.java:241] [main] Processing chromosome C4261 Processing chromosome C4261 INFO [2014-03-08 06:24:53,141] [Preprocessor.java:241] [main] Processing chromosome C4287 Processing chromosome C4287 INFO [2014-03-08 06:24:53,215] [Preprocessor.java:241] [main] Processing chromosome C4291 Processing chromosome C4291 INFO [2014-03-08 06:24:53,283] [Preprocessor.java:241] [main] Processing chromosome C4305 Processing chromosome C4305 INFO [2014-03-08 06:24:53,402] [Preprocessor.java:241] [main] Processing chromosome C4315 Processing chromosome C4315 INFO [2014-03-08 06:24:53,504] [Preprocessor.java:241] [main] Processing chromosome C4323 Processing chromosome C4323 INFO [2014-03-08 06:24:53,555] [Preprocessor.java:241] [main] Processing chromosome C4331 Processing chromosome C4331 INFO [2014-03-08 06:24:53,648] [Preprocessor.java:241] [main] Processing chromosome C4333 Processing chromosome C4333 INFO [2014-03-08 06:24:53,719] [Preprocessor.java:241] [main] Processing chromosome C4417 Processing chromosome C4417 INFO [2014-03-08 06:24:53,996] [Preprocessor.java:241] [main] Processing chromosome C4425 Processing chromosome C4425 INFO [2014-03-08 06:24:54,052] [Preprocessor.java:241] [main] Processing chromosome C4429 Processing chromosome C4429 INFO [2014-03-08 06:24:54,159] [Preprocessor.java:241] [main] Processing chromosome C4431 Processing chromosome C4431 INFO [2014-03-08 06:24:54,311] [Preprocessor.java:241] [main] Processing chromosome C4433 Processing chromosome C4433 INFO [2014-03-08 06:24:54,355] [Preprocessor.java:241] [main] Processing chromosome C4441 Processing chromosome C4441 INFO [2014-03-08 06:24:54,463] [Preprocessor.java:241] [main] Processing chromosome C4449 Processing chromosome C4449 INFO [2014-03-08 06:24:54,607] [Preprocessor.java:241] [main] Processing chromosome C4465 Processing chromosome C4465 INFO [2014-03-08 06:24:54,673] [Preprocessor.java:241] [main] Processing chromosome C4517 Processing chromosome C4517 INFO [2014-03-08 06:24:54,844] [Preprocessor.java:241] [main] Processing chromosome C4535 Processing chromosome C4535 INFO [2014-03-08 06:24:54,953] [Preprocessor.java:241] [main] Processing chromosome C4671 Processing chromosome C4671 INFO [2014-03-08 06:24:54,997] [Preprocessor.java:241] [main] Processing chromosome C4689 Processing chromosome C4689 INFO [2014-03-08 06:24:55,127] [Preprocessor.java:241] [main] Processing chromosome C4695 Processing chromosome C4695 INFO [2014-03-08 06:24:55,233] [Preprocessor.java:241] [main] Processing chromosome C4697 Processing chromosome C4697 INFO [2014-03-08 06:24:55,302] [Preprocessor.java:241] [main] Processing chromosome C4705 Processing chromosome C4705 INFO [2014-03-08 06:24:55,421] [Preprocessor.java:241] [main] Processing chromosome C4729 Processing chromosome C4729 INFO [2014-03-08 06:24:55,488] [Preprocessor.java:241] [main] Processing chromosome C4759 Processing chromosome C4759 INFO [2014-03-08 06:24:55,596] [Preprocessor.java:241] [main] Processing chromosome C4769 Processing chromosome C4769 INFO [2014-03-08 06:24:55,684] [Preprocessor.java:241] [main] Processing chromosome C4773 Processing chromosome C4773 INFO [2014-03-08 06:24:55,785] [Preprocessor.java:241] [main] Processing chromosome C4867 Processing chromosome C4867 INFO [2014-03-08 06:24:55,909] [Preprocessor.java:241] [main] Processing chromosome C4873 Processing chromosome C4873 INFO [2014-03-08 06:24:55,984] [Preprocessor.java:241] [main] Processing chromosome C4875 Processing chromosome C4875 INFO [2014-03-08 06:24:56,026] [Preprocessor.java:241] [main] Processing chromosome C4883 Processing chromosome C4883 INFO [2014-03-08 06:24:56,159] [Preprocessor.java:241] [main] Processing chromosome C4893 Processing chromosome C4893 INFO [2014-03-08 06:24:56,211] [Preprocessor.java:241] [main] Processing chromosome C4901 Processing chromosome C4901 INFO [2014-03-08 06:24:56,363] [Preprocessor.java:241] [main] Processing chromosome C4907 Processing chromosome C4907 INFO [2014-03-08 06:24:56,404] [Preprocessor.java:241] [main] Processing chromosome C4955 Processing chromosome C4955 INFO [2014-03-08 06:24:56,499] [Preprocessor.java:241] [main] Processing chromosome C4969 Processing chromosome C4969 INFO [2014-03-08 06:24:56,538] [Preprocessor.java:241] [main] Processing chromosome C5077 Processing chromosome C5077 INFO [2014-03-08 06:24:56,622] [Preprocessor.java:241] [main] Processing chromosome C5105 Processing chromosome C5105 INFO [2014-03-08 06:24:56,660] [Preprocessor.java:241] [main] Processing chromosome C5135 Processing chromosome C5135 INFO [2014-03-08 06:24:56,752] [Preprocessor.java:241] [main] Processing chromosome C5149 Processing chromosome C5149 INFO [2014-03-08 06:24:56,795] [Preprocessor.java:241] [main] Processing chromosome C5169 Processing chromosome C5169 INFO [2014-03-08 06:24:56,971] [Preprocessor.java:241] [main] Processing chromosome C5181 Processing chromosome C5181 INFO [2014-03-08 06:24:57,055] [Preprocessor.java:241] [main] Processing chromosome C5183 Processing chromosome C5183 INFO [2014-03-08 06:24:57,184] [Preprocessor.java:241] [main] Processing chromosome C5187 Processing chromosome C5187 INFO [2014-03-08 06:24:57,226] [Preprocessor.java:241] [main] Processing chromosome C5189 Processing chromosome C5189 INFO [2014-03-08 06:24:57,315] [Preprocessor.java:241] [main] Processing chromosome C5193 Processing chromosome C5193 INFO [2014-03-08 06:24:57,387] [Preprocessor.java:241] [main] Processing chromosome C5201 Processing chromosome C5201 INFO [2014-03-08 06:24:57,457] [Preprocessor.java:241] [main] Processing chromosome C5203 Processing chromosome C5203 INFO [2014-03-08 06:24:57,524] [Preprocessor.java:241] [main] Processing chromosome C523 Processing chromosome C523 INFO [2014-03-08 06:24:57,594] [Preprocessor.java:241] [main] Processing chromosome C5325 Processing chromosome C5325 INFO [2014-03-08 06:24:57,681] [Preprocessor.java:241] [main] Processing chromosome C5333 Processing chromosome C5333 INFO [2014-03-08 06:24:57,753] [Preprocessor.java:241] [main] Processing chromosome C5335 Processing chromosome C5335 INFO [2014-03-08 06:24:57,793] [Preprocessor.java:241] [main] Processing chromosome C5363 Processing chromosome C5363 INFO [2014-03-08 06:24:57,858] [Preprocessor.java:241] [main] Processing chromosome C5405 Processing chromosome C5405 INFO [2014-03-08 06:24:57,958] [Preprocessor.java:241] [main] Processing chromosome C5411 Processing chromosome C5411 INFO [2014-03-08 06:24:58,002] [Preprocessor.java:241] [main] Processing chromosome C5423 Processing chromosome C5423 INFO [2014-03-08 06:24:58,099] [Preprocessor.java:241] [main] Processing chromosome C5429 Processing chromosome C5429 INFO [2014-03-08 06:24:58,208] [Preprocessor.java:241] [main] Processing chromosome C5445 Processing chromosome C5445 INFO [2014-03-08 06:24:58,254] [Preprocessor.java:241] [main] Processing chromosome C5545 Processing chromosome C5545 INFO [2014-03-08 06:24:58,355] [Preprocessor.java:241] [main] Processing chromosome C5557 Processing chromosome C5557 INFO [2014-03-08 06:24:58,459] [Preprocessor.java:241] [main] Processing chromosome C5565 Processing chromosome C5565 INFO [2014-03-08 06:24:58,536] [Preprocessor.java:241] [main] Processing chromosome C5567 Processing chromosome C5567 INFO [2014-03-08 06:24:58,576] [Preprocessor.java:241] [main] Processing chromosome C5573 Processing chromosome C5573 INFO [2014-03-08 06:24:58,635] [Preprocessor.java:241] [main] Processing chromosome C5593 Processing chromosome C5593 INFO [2014-03-08 06:24:58,761] [Preprocessor.java:241] [main] Processing chromosome C5607 Processing chromosome C5607 INFO [2014-03-08 06:24:58,826] [Preprocessor.java:241] [main] Processing chromosome C5657 Processing chromosome C5657 INFO [2014-03-08 06:24:58,900] [Preprocessor.java:241] [main] Processing chromosome C5677 Processing chromosome C5677 INFO [2014-03-08 06:24:58,942] [Preprocessor.java:241] [main] Processing chromosome C5679 Processing chromosome C5679 INFO [2014-03-08 06:24:59,037] [Preprocessor.java:241] [main] Processing chromosome C571 Processing chromosome C571 INFO [2014-03-08 06:24:59,088] [Preprocessor.java:241] [main] Processing chromosome C5771 Processing chromosome C5771 INFO [2014-03-08 06:24:59,191] [Preprocessor.java:241] [main] Processing chromosome C5775 Processing chromosome C5775 INFO [2014-03-08 06:24:59,281] [Preprocessor.java:241] [main] Processing chromosome C5777 Processing chromosome C5777 INFO [2014-03-08 06:24:59,397] [Preprocessor.java:241] [main] Processing chromosome C5785 Processing chromosome C5785 INFO [2014-03-08 06:24:59,463] [Preprocessor.java:241] [main] Processing chromosome C5819 Processing chromosome C5819 INFO [2014-03-08 06:24:59,650] [Preprocessor.java:241] [main] Processing chromosome C5827 Processing chromosome C5827 INFO [2014-03-08 06:24:59,691] [Preprocessor.java:241] [main] Processing chromosome C5847 Processing chromosome C5847 INFO [2014-03-08 06:24:59,797] [Preprocessor.java:241] [main] Processing chromosome C5853 Processing chromosome C5853 INFO [2014-03-08 06:24:59,901] [Preprocessor.java:241] [main] Processing chromosome C5877 Processing chromosome C5877 INFO [2014-03-08 06:24:59,954] [Preprocessor.java:241] [main] Processing chromosome C593 Processing chromosome C593 INFO [2014-03-08 06:25:00,065] [Preprocessor.java:241] [main] Processing chromosome C6015 Processing chromosome C6015 INFO [2014-03-08 06:25:00,207] [Preprocessor.java:241] [main] Processing chromosome C6057 Processing chromosome C6057 INFO [2014-03-08 06:25:00,292] [Preprocessor.java:241] [main] Processing chromosome C6107 Processing chromosome C6107 INFO [2014-03-08 06:25:00,464] [Preprocessor.java:241] [main] Processing chromosome C6117 Processing chromosome C6117 INFO [2014-03-08 06:25:00,564] [Preprocessor.java:241] [main] Processing chromosome C6123 Processing chromosome C6123 INFO [2014-03-08 06:25:00,617] [Preprocessor.java:241] [main] Processing chromosome C617 Processing chromosome C617 INFO [2014-03-08 06:25:00,686] [Preprocessor.java:241] [main] Processing chromosome C6187 Processing chromosome C6187 INFO [2014-03-08 06:25:00,752] [Preprocessor.java:241] [main] Processing chromosome C6207 Processing chromosome C6207 INFO [2014-03-08 06:25:00,853] [Preprocessor.java:241] [main] Processing chromosome C6215 Processing chromosome C6215 INFO [2014-03-08 06:25:01,064] [Preprocessor.java:241] [main] Processing chromosome C6227 Processing chromosome C6227 INFO [2014-03-08 06:25:01,113] [Preprocessor.java:241] [main] Processing chromosome C623 Processing chromosome C623 INFO [2014-03-08 06:25:01,210] [Preprocessor.java:241] [main] Processing chromosome C6261 Processing chromosome C6261 INFO [2014-03-08 06:25:01,276] [Preprocessor.java:241] [main] Processing chromosome C6265 Processing chromosome C6265 INFO [2014-03-08 06:25:01,383] [Preprocessor.java:241] [main] Processing chromosome C6269 Processing chromosome C6269 INFO [2014-03-08 06:25:01,481] [Preprocessor.java:241] [main] Processing chromosome C6275 Processing chromosome C6275 INFO [2014-03-08 06:25:01,570] [Preprocessor.java:241] [main] Processing chromosome C6277 Processing chromosome C6277 INFO [2014-03-08 06:25:01,706] [Preprocessor.java:241] [main] Processing chromosome C6283 Processing chromosome C6283 INFO [2014-03-08 06:25:01,811] [Preprocessor.java:241] [main] Processing chromosome C6337 Processing chromosome C6337 INFO [2014-03-08 06:25:01,934] [Preprocessor.java:241] [main] Processing chromosome C6363 Processing chromosome C6363 INFO [2014-03-08 06:25:01,974] [Preprocessor.java:241] [main] Processing chromosome C6369 Processing chromosome C6369 INFO [2014-03-08 06:25:02,041] [Preprocessor.java:241] [main] Processing chromosome C6379 Processing chromosome C6379 INFO [2014-03-08 06:25:02,066] [Preprocessor.java:241] [main] Processing chromosome C6381 Processing chromosome C6381 INFO [2014-03-08 06:25:02,113] [Preprocessor.java:241] [main] Processing chromosome C6383 Processing chromosome C6383 INFO [2014-03-08 06:25:02,156] [Preprocessor.java:241] [main] Processing chromosome C6387 Processing chromosome C6387 INFO [2014-03-08 06:25:02,196] [Preprocessor.java:241] [main] Processing chromosome C6399 Processing chromosome C6399 INFO [2014-03-08 06:25:02,266] [Preprocessor.java:241] [main] Processing chromosome C6401 Processing chromosome C6401 INFO [2014-03-08 06:25:02,353] [Preprocessor.java:241] [main] Processing chromosome C6441 Processing chromosome C6441 INFO [2014-03-08 06:25:02,426] [Preprocessor.java:241] [main] Processing chromosome C6459 Processing chromosome C6459 INFO [2014-03-08 06:25:02,451] [Preprocessor.java:241] [main] Processing chromosome C6563 Processing chromosome C6563 INFO [2014-03-08 06:25:02,499] [Preprocessor.java:241] [main] Processing chromosome C6589 Processing chromosome C6589 INFO [2014-03-08 06:25:02,559] [Preprocessor.java:241] [main] Processing chromosome C6599 Processing chromosome C6599 INFO [2014-03-08 06:25:02,626] [Preprocessor.java:241] [main] Processing chromosome C6601 Processing chromosome C6601 INFO [2014-03-08 06:25:02,735] [Preprocessor.java:241] [main] Processing chromosome C6625 Processing chromosome C6625 INFO [2014-03-08 06:25:02,819] [Preprocessor.java:241] [main] Processing chromosome C6637 Processing chromosome C6637 INFO [2014-03-08 06:25:02,917] [Preprocessor.java:241] [main] Processing chromosome C6643 Processing chromosome C6643 INFO [2014-03-08 06:25:02,948] [Preprocessor.java:241] [main] Processing chromosome C671 Processing chromosome C671 INFO [2014-03-08 06:25:03,125] [Preprocessor.java:241] [main] Processing chromosome C6727 Processing chromosome C6727 INFO [2014-03-08 06:25:03,157] [Preprocessor.java:241] [main] Processing chromosome C6735 Processing chromosome C6735 INFO [2014-03-08 06:25:03,238] [Preprocessor.java:241] [main] Processing chromosome C6759 Processing chromosome C6759 INFO [2014-03-08 06:25:03,265] [Preprocessor.java:241] [main] Processing chromosome C6787 Processing chromosome C6787 INFO [2014-03-08 06:25:03,326] [Preprocessor.java:241] [main] Processing chromosome C6807 Processing chromosome C6807 INFO [2014-03-08 06:25:03,388] [Preprocessor.java:241] [main] Processing chromosome C6811 Processing chromosome C6811 INFO [2014-03-08 06:25:03,436] [Preprocessor.java:241] [main] Processing chromosome C6841 Processing chromosome C6841 INFO [2014-03-08 06:25:03,460] [Preprocessor.java:241] [main] Processing chromosome C6911 Processing chromosome C6911 INFO [2014-03-08 06:25:03,535] [Preprocessor.java:241] [main] Processing chromosome C6927 Processing chromosome C6927 INFO [2014-03-08 06:25:03,584] [Preprocessor.java:241] [main] Processing chromosome C6933 Processing chromosome C6933 INFO [2014-03-08 06:25:03,637] [Preprocessor.java:241] [main] Processing chromosome C6937 Processing chromosome C6937 INFO [2014-03-08 06:25:03,661] [Preprocessor.java:241] [main] Processing chromosome C6965 Processing chromosome C6965 INFO [2014-03-08 06:25:03,725] [Preprocessor.java:241] [main] Processing chromosome C6989 Processing chromosome C6989 INFO [2014-03-08 06:25:03,767] [Preprocessor.java:241] [main] Processing chromosome C699 Processing chromosome C699 INFO [2014-03-08 06:25:03,856] [Preprocessor.java:241] [main] Processing chromosome C7003 Processing chromosome C7003 INFO [2014-03-08 06:25:03,954] [Preprocessor.java:241] [main] Processing chromosome C7015 Processing chromosome C7015 INFO [2014-03-08 06:25:04,013] [Preprocessor.java:241] [main] Processing chromosome C7019 Processing chromosome C7019 INFO [2014-03-08 06:25:04,109] [Preprocessor.java:241] [main] Processing chromosome C705 Processing chromosome C705 INFO [2014-03-08 06:25:04,193] [Preprocessor.java:241] [main] Processing chromosome C7083 Processing chromosome C7083 INFO [2014-03-08 06:25:04,218] [Preprocessor.java:241] [main] Processing chromosome C7095 Processing chromosome C7095 INFO [2014-03-08 06:25:04,292] [Preprocessor.java:241] [main] Processing chromosome C7115 Processing chromosome C7115 INFO [2014-03-08 06:25:04,322] [Preprocessor.java:241] [main] Processing chromosome C7141 Processing chromosome C7141 INFO [2014-03-08 06:25:04,449] [Preprocessor.java:241] [main] Processing chromosome C7145 Processing chromosome C7145 INFO [2014-03-08 06:25:04,507] [Preprocessor.java:241] [main] Processing chromosome C7147 Processing chromosome C7147 INFO [2014-03-08 06:25:04,555] [Preprocessor.java:241] [main] Processing chromosome C7257 Processing chromosome C7257 INFO [2014-03-08 06:25:04,582] [Preprocessor.java:241] [main] Processing chromosome C7277 Processing chromosome C7277 INFO [2014-03-08 06:25:04,650] [Preprocessor.java:241] [main] Processing chromosome C7283 Processing chromosome C7283 INFO [2014-03-08 06:25:04,675] [Preprocessor.java:241] [main] Processing chromosome C7303 Processing chromosome C7303 INFO [2014-03-08 06:25:04,749] [Preprocessor.java:241] [main] Processing chromosome C7307 Processing chromosome C7307 INFO [2014-03-08 06:25:04,807] [Preprocessor.java:241] [main] Processing chromosome C7327 Processing chromosome C7327 INFO [2014-03-08 06:25:04,851] [Preprocessor.java:241] [main] Processing chromosome C7333 Processing chromosome C7333 INFO [2014-03-08 06:25:04,962] [Preprocessor.java:241] [main] Processing chromosome C7343 Processing chromosome C7343 INFO [2014-03-08 06:25:04,991] [Preprocessor.java:241] [main] Processing chromosome C7453 Processing chromosome C7453 INFO [2014-03-08 06:25:05,108] [Preprocessor.java:241] [main] Processing chromosome C7457 Processing chromosome C7457 INFO [2014-03-08 06:25:05,192] [Preprocessor.java:241] [main] Processing chromosome C7473 Processing chromosome C7473 INFO [2014-03-08 06:25:05,260] [Preprocessor.java:241] [main] Processing chromosome C7499 Processing chromosome C7499 INFO [2014-03-08 06:25:05,314] [Preprocessor.java:241] [main] Processing chromosome C7511 Processing chromosome C7511 INFO [2014-03-08 06:25:05,338] [Preprocessor.java:241] [main] Processing chromosome C7531 Processing chromosome C7531 INFO [2014-03-08 06:25:05,399] [Preprocessor.java:241] [main] Processing chromosome C7621 Processing chromosome C7621 INFO [2014-03-08 06:25:05,479] [Preprocessor.java:241] [main] Processing chromosome C7639 Processing chromosome C7639 INFO [2014-03-08 06:25:05,509] [Preprocessor.java:241] [main] Processing chromosome C7659 Processing chromosome C7659 INFO [2014-03-08 06:25:05,558] [Preprocessor.java:241] [main] Processing chromosome C7785 Processing chromosome C7785 INFO [2014-03-08 06:25:05,611] [Preprocessor.java:241] [main] Processing chromosome C7787 Processing chromosome C7787 INFO [2014-03-08 06:25:05,663] [Preprocessor.java:241] [main] Processing chromosome C7791 Processing chromosome C7791 INFO [2014-03-08 06:25:05,773] [Preprocessor.java:241] [main] Processing chromosome C7793 Processing chromosome C7793 INFO [2014-03-08 06:25:05,838] [Preprocessor.java:241] [main] Processing chromosome C7797 Processing chromosome C7797 INFO [2014-03-08 06:25:05,960] [Preprocessor.java:241] [main] Processing chromosome C7799 Processing chromosome C7799 INFO [2014-03-08 06:25:06,001] [Preprocessor.java:241] [main] Processing chromosome C7811 Processing chromosome C7811 INFO [2014-03-08 06:25:06,051] [Preprocessor.java:241] [main] Processing chromosome C7845 Processing chromosome C7845 INFO [2014-03-08 06:25:06,190] [Preprocessor.java:241] [main] Processing chromosome C785 Processing chromosome C785 INFO [2014-03-08 06:25:06,292] [Preprocessor.java:241] [main] Processing chromosome C7855 Processing chromosome C7855 INFO [2014-03-08 06:25:06,435] [Preprocessor.java:241] [main] Processing chromosome C7875 Processing chromosome C7875 INFO [2014-03-08 06:25:06,519] [Preprocessor.java:241] [main] Processing chromosome C7891 Processing chromosome C7891 INFO [2014-03-08 06:25:06,563] [Preprocessor.java:241] [main] Processing chromosome C7899 Processing chromosome C7899 INFO [2014-03-08 06:25:06,588] [Preprocessor.java:241] [main] Processing chromosome C7993 Processing chromosome C7993 INFO [2014-03-08 06:25:06,642] [Preprocessor.java:241] [main] Processing chromosome C7999 Processing chromosome C7999 INFO [2014-03-08 06:25:06,739] [Preprocessor.java:241] [main] Processing chromosome C8003 Processing chromosome C8003 INFO [2014-03-08 06:25:06,810] [Preprocessor.java:241] [main] Processing chromosome C8005 Processing chromosome C8005 INFO [2014-03-08 06:25:06,892] [Preprocessor.java:241] [main] Processing chromosome C8031 Processing chromosome C8031 INFO [2014-03-08 06:25:07,003] [Preprocessor.java:241] [main] Processing chromosome C8037 Processing chromosome C8037 INFO [2014-03-08 06:25:07,045] [Preprocessor.java:241] [main] Processing chromosome C807 Processing chromosome C807 INFO [2014-03-08 06:25:07,194] [Preprocessor.java:241] [main] Processing chromosome C8113 Processing chromosome C8113 INFO [2014-03-08 06:25:07,283] [Preprocessor.java:241] [main] Processing chromosome C8125 Processing chromosome C8125 INFO [2014-03-08 06:25:07,339] [Preprocessor.java:241] [main] Processing chromosome C8133 Processing chromosome C8133 INFO [2014-03-08 06:25:07,364] [Preprocessor.java:241] [main] Processing chromosome C8153 Processing chromosome C8153 INFO [2014-03-08 06:25:07,456] [Preprocessor.java:241] [main] Processing chromosome C8159 Processing chromosome C8159 INFO [2014-03-08 06:25:07,521] [Preprocessor.java:241] [main] Processing chromosome C8167 Processing chromosome C8167 INFO [2014-03-08 06:25:07,589] [Preprocessor.java:241] [main] Processing chromosome C8177 Processing chromosome C8177 INFO [2014-03-08 06:25:07,633] [Preprocessor.java:241] [main] Processing chromosome C8189 Processing chromosome C8189 INFO [2014-03-08 06:25:07,692] [Preprocessor.java:241] [main] Processing chromosome C8205 Processing chromosome C8205 INFO [2014-03-08 06:25:07,748] [Preprocessor.java:241] [main] Processing chromosome C8231 Processing chromosome C8231 INFO [2014-03-08 06:25:07,813] [Preprocessor.java:241] [main] Processing chromosome C827 Processing chromosome C827 INFO [2014-03-08 06:25:07,851] [Preprocessor.java:241] [main] Processing chromosome C8281 Processing chromosome C8281 INFO [2014-03-08 06:25:07,943] [Preprocessor.java:241] [main] Processing chromosome C8283 Processing chromosome C8283 INFO [2014-03-08 06:25:08,019] [Preprocessor.java:241] [main] Processing chromosome C8293 Processing chromosome C8293 INFO [2014-03-08 06:25:08,068] [Preprocessor.java:241] [main] Processing chromosome C8303 Processing chromosome C8303 INFO [2014-03-08 06:25:08,142] [Preprocessor.java:241] [main] Processing chromosome C8309 Processing chromosome C8309 INFO [2014-03-08 06:25:08,184] [Preprocessor.java:241] [main] Processing chromosome C8315 Processing chromosome C8315 INFO [2014-03-08 06:25:08,301] [Preprocessor.java:241] [main] Processing chromosome C8339 Processing chromosome C8339 INFO [2014-03-08 06:25:08,363] [Preprocessor.java:241] [main] Processing chromosome C8363 Processing chromosome C8363 INFO [2014-03-08 06:25:08,423] [Preprocessor.java:241] [main] Processing chromosome C8365 Processing chromosome C8365 INFO [2014-03-08 06:25:08,482] [Preprocessor.java:241] [main] Processing chromosome C8377 Processing chromosome C8377 INFO [2014-03-08 06:25:08,527] [Preprocessor.java:241] [main] Processing chromosome C8379 Processing chromosome C8379 INFO [2014-03-08 06:25:08,568] [Preprocessor.java:241] [main] Processing chromosome C8383 Processing chromosome C8383 INFO [2014-03-08 06:25:08,594] [Preprocessor.java:241] [main] Processing chromosome C8393 Processing chromosome C8393 INFO [2014-03-08 06:25:08,637] [Preprocessor.java:241] [main] Processing chromosome C8433 Processing chromosome C8433 INFO [2014-03-08 06:25:08,684] [Preprocessor.java:241] [main] Processing chromosome C8461 Processing chromosome C8461 INFO [2014-03-08 06:25:08,738] [Preprocessor.java:241] [main] Processing chromosome C8465 Processing chromosome C8465 INFO [2014-03-08 06:25:08,805] [Preprocessor.java:241] [main] Processing chromosome C8485 Processing chromosome C8485 INFO [2014-03-08 06:25:08,931] [Preprocessor.java:241] [main] Processing chromosome C8503 Processing chromosome C8503 INFO [2014-03-08 06:25:08,962] [Preprocessor.java:241] [main] Processing chromosome C8513 Processing chromosome C8513 INFO [2014-03-08 06:25:09,047] [Preprocessor.java:241] [main] Processing chromosome C8519 Processing chromosome C8519 INFO [2014-03-08 06:25:09,115] [Preprocessor.java:241] [main] Processing chromosome C8563 Processing chromosome C8563 INFO [2014-03-08 06:25:09,140] [Preprocessor.java:241] [main] Processing chromosome C8569 Processing chromosome C8569 INFO [2014-03-08 06:25:09,181] [Preprocessor.java:241] [main] Processing chromosome C8575 Processing chromosome C8575 INFO [2014-03-08 06:25:09,270] [Preprocessor.java:241] [main] Processing chromosome C8585 Processing chromosome C8585 INFO [2014-03-08 06:25:09,339] [Preprocessor.java:241] [main] Processing chromosome C859 Processing chromosome C859 INFO [2014-03-08 06:25:09,391] [Preprocessor.java:241] [main] Processing chromosome C8591 Processing chromosome C8591 INFO [2014-03-08 06:25:09,478] [Preprocessor.java:241] [main] Processing chromosome C8599 Processing chromosome C8599 INFO [2014-03-08 06:25:09,565] [Preprocessor.java:241] [main] Processing chromosome C8601 Processing chromosome C8601 INFO [2014-03-08 06:25:09,594] [Preprocessor.java:241] [main] Processing chromosome C8605 Processing chromosome C8605 INFO [2014-03-08 06:25:09,665] [Preprocessor.java:241] [main] Processing chromosome C8665 Processing chromosome C8665 INFO [2014-03-08 06:25:09,733] [Preprocessor.java:241] [main] Processing chromosome C8671 Processing chromosome C8671 INFO [2014-03-08 06:25:09,791] [Preprocessor.java:241] [main] Processing chromosome C8695 Processing chromosome C8695 INFO [2014-03-08 06:25:09,816] [Preprocessor.java:241] [main] Processing chromosome C8739 Processing chromosome C8739 INFO [2014-03-08 06:25:09,854] [Preprocessor.java:241] [main] Processing chromosome C8751 Processing chromosome C8751 INFO [2014-03-08 06:25:09,927] [Preprocessor.java:241] [main] Processing chromosome C8757 Processing chromosome C8757 INFO [2014-03-08 06:25:09,996] [Preprocessor.java:241] [main] Processing chromosome C8767 Processing chromosome C8767 INFO [2014-03-08 06:25:10,087] [Preprocessor.java:241] [main] Processing chromosome C8771 Processing chromosome C8771 INFO [2014-03-08 06:25:10,115] [Preprocessor.java:241] [main] Processing chromosome C8793 Processing chromosome C8793 INFO [2014-03-08 06:25:10,198] [Preprocessor.java:241] [main] Processing chromosome C8843 Processing chromosome C8843 INFO [2014-03-08 06:25:10,329] [Preprocessor.java:241] [main] Processing chromosome C8845 Processing chromosome C8845 INFO [2014-03-08 06:25:10,388] [Preprocessor.java:241] [main] Processing chromosome C8855 Processing chromosome C8855 INFO [2014-03-08 06:25:10,447] [Preprocessor.java:241] [main] Processing chromosome C8887 Processing chromosome C8887 INFO [2014-03-08 06:25:10,517] [Preprocessor.java:241] [main] Processing chromosome C8891 Processing chromosome C8891 INFO [2014-03-08 06:25:10,581] [Preprocessor.java:241] [main] Processing chromosome C89 Processing chromosome C89 INFO [2014-03-08 06:25:10,652] [Preprocessor.java:241] [main] Processing chromosome C8905 Processing chromosome C8905 INFO [2014-03-08 06:25:10,677] [Preprocessor.java:241] [main] Processing chromosome C8907 Processing chromosome C8907 INFO [2014-03-08 06:25:10,720] [Preprocessor.java:241] [main] Processing chromosome C897 Processing chromosome C897 INFO [2014-03-08 06:25:10,802] [Preprocessor.java:241] [main] Processing chromosome C8987 Processing chromosome C8987 INFO [2014-03-08 06:25:10,871] [Preprocessor.java:241] [main] Processing chromosome C9001 Processing chromosome C9001 INFO [2014-03-08 06:25:10,919] [Preprocessor.java:241] [main] Processing chromosome C901 Processing chromosome C901 INFO [2014-03-08 06:25:11,008] [Preprocessor.java:241] [main] Processing chromosome C9013 Processing chromosome C9013 INFO [2014-03-08 06:25:11,101] [Preprocessor.java:241] [main] Processing chromosome C9015 Processing chromosome C9015 INFO [2014-03-08 06:25:11,163] [Preprocessor.java:241] [main] Processing chromosome C9019 Processing chromosome C9019 INFO [2014-03-08 06:25:11,218] [Preprocessor.java:241] [main] Processing chromosome C9023 Processing chromosome C9023 INFO [2014-03-08 06:25:11,295] [Preprocessor.java:241] [main] Processing chromosome C9065 Processing chromosome C9065 INFO [2014-03-08 06:25:11,339] [Preprocessor.java:241] [main] Processing chromosome C9069 Processing chromosome C9069 INFO [2014-03-08 06:25:11,436] [Preprocessor.java:241] [main] Processing chromosome C909 Processing chromosome C909 INFO [2014-03-08 06:25:11,507] [Preprocessor.java:241] [main] Processing chromosome C9097 Processing chromosome C9097 INFO [2014-03-08 06:25:11,535] [Preprocessor.java:241] [main] Processing chromosome C91 Processing chromosome C91 INFO [2014-03-08 06:25:11,624] [Preprocessor.java:241] [main] Processing chromosome C9117 Processing chromosome C9117 INFO [2014-03-08 06:25:11,683] [Preprocessor.java:241] [main] Processing chromosome C913 Processing chromosome C913 INFO [2014-03-08 06:25:11,778] [Preprocessor.java:241] [main] Processing chromosome C915 Processing chromosome C915 INFO [2014-03-08 06:25:11,832] [Preprocessor.java:241] [main] Processing chromosome C9161 Processing chromosome C9161 INFO [2014-03-08 06:25:11,879] [Preprocessor.java:241] [main] Processing chromosome C9191 Processing chromosome C9191 INFO [2014-03-08 06:25:11,920] [Preprocessor.java:241] [main] Processing chromosome C9255 Processing chromosome C9255 INFO [2014-03-08 06:25:11,982] [Preprocessor.java:241] [main] Processing chromosome C9265 Processing chromosome C9265 INFO [2014-03-08 06:25:12,035] [Preprocessor.java:241] [main] Processing chromosome C9271 Processing chromosome C9271 INFO [2014-03-08 06:25:12,092] [Preprocessor.java:241] [main] Processing chromosome C9273 Processing chromosome C9273 INFO [2014-03-08 06:25:12,148] [Preprocessor.java:241] [main] Processing chromosome C9287 Processing chromosome C9287 INFO [2014-03-08 06:25:12,214] [Preprocessor.java:241] [main] Processing chromosome C9293 Processing chromosome C9293 INFO [2014-03-08 06:25:12,278] [Preprocessor.java:241] [main] Processing chromosome C9297 Processing chromosome C9297 INFO [2014-03-08 06:25:12,353] [Preprocessor.java:241] [main] Processing chromosome C9301 Processing chromosome C9301 INFO [2014-03-08 06:25:12,436] [Preprocessor.java:241] [main] Processing chromosome C9303 Processing chromosome C9303 INFO [2014-03-08 06:25:12,524] [Preprocessor.java:241] [main] Processing chromosome C9305 Processing chromosome C9305 INFO [2014-03-08 06:25:12,612] [Preprocessor.java:241] [main] Processing chromosome C9311 Processing chromosome C9311 INFO [2014-03-08 06:25:12,641] [Preprocessor.java:241] [main] Processing chromosome C9317 Processing chromosome C9317 INFO [2014-03-08 06:25:12,735] [Preprocessor.java:241] [main] Processing chromosome C9319 Processing chromosome C9319 INFO [2014-03-08 06:25:12,788] [Preprocessor.java:241] [main] Processing chromosome C937 Processing chromosome C937 INFO [2014-03-08 06:25:12,835] [Preprocessor.java:241] [main] Processing chromosome C9375 Processing chromosome C9375 INFO [2014-03-08 06:25:12,881] [Preprocessor.java:241] [main] Processing chromosome C9381 Processing chromosome C9381 INFO [2014-03-08 06:25:12,980] [Preprocessor.java:241] [main] Processing chromosome C9383 Processing chromosome C9383 INFO [2014-03-08 06:25:13,034] [Preprocessor.java:241] [main] Processing chromosome C9389 Processing chromosome C9389 INFO [2014-03-08 06:25:13,087] [Preprocessor.java:241] [main] Processing chromosome C9391 Processing chromosome C9391 INFO [2014-03-08 06:25:13,123] [Preprocessor.java:241] [main] Processing chromosome C9401 Processing chromosome C9401 INFO [2014-03-08 06:25:13,180] [Preprocessor.java:241] [main] Processing chromosome C9405 Processing chromosome C9405 INFO [2014-03-08 06:25:13,206] [Preprocessor.java:241] [main] Processing chromosome C9407 Processing chromosome C9407 INFO [2014-03-08 06:25:13,252] [Preprocessor.java:241] [main] Processing chromosome C9417 Processing chromosome C9417 INFO [2014-03-08 06:25:13,330] [Preprocessor.java:241] [main] Processing chromosome C9437 Processing chromosome C9437 INFO [2014-03-08 06:25:13,385] [Preprocessor.java:241] [main] Processing chromosome C9481 Processing chromosome C9481 INFO [2014-03-08 06:25:13,451] [Preprocessor.java:241] [main] Processing chromosome C9483 Processing chromosome C9483 INFO [2014-03-08 06:25:13,505] [Preprocessor.java:241] [main] Processing chromosome C9485 Processing chromosome C9485 INFO [2014-03-08 06:25:13,575] [Preprocessor.java:241] [main] Processing chromosome C9509 Processing chromosome C9509 INFO [2014-03-08 06:25:13,650] [Preprocessor.java:241] [main] Processing chromosome C9515 Processing chromosome C9515 INFO [2014-03-08 06:25:13,706] [Preprocessor.java:241] [main] Processing chromosome C9521 Processing chromosome C9521 INFO [2014-03-08 06:25:13,753] [Preprocessor.java:241] [main] Processing chromosome C9531 Processing chromosome C9531 INFO [2014-03-08 06:25:13,780] [Preprocessor.java:241] [main] Processing chromosome C9565 Processing chromosome C9565 INFO [2014-03-08 06:25:13,842] [Preprocessor.java:241] [main] Processing chromosome C9569 Processing chromosome C9569 INFO [2014-03-08 06:25:13,909] [Preprocessor.java:241] [main] Processing chromosome C9575 Processing chromosome C9575 INFO [2014-03-08 06:25:13,935] [Preprocessor.java:241] [main] Processing chromosome C9585 Processing chromosome C9585 INFO [2014-03-08 06:25:14,014] [Preprocessor.java:241] [main] Processing chromosome C9589 Processing chromosome C9589 INFO [2014-03-08 06:25:14,080] [Preprocessor.java:241] [main] Processing chromosome C9609 Processing chromosome C9609 INFO [2014-03-08 06:25:14,136] [Preprocessor.java:241] [main] Processing chromosome C9651 Processing chromosome C9651 INFO [2014-03-08 06:25:14,179] [Preprocessor.java:241] [main] Processing chromosome C9661 Processing chromosome C9661 INFO [2014-03-08 06:25:14,239] [Preprocessor.java:241] [main] Processing chromosome C9663 Processing chromosome C9663 INFO [2014-03-08 06:25:14,299] [Preprocessor.java:241] [main] Processing chromosome C9667 Processing chromosome C9667 INFO [2014-03-08 06:25:14,358] [Preprocessor.java:241] [main] Processing chromosome C9671 Processing chromosome C9671 INFO [2014-03-08 06:25:14,425] [Preprocessor.java:241] [main] Processing chromosome C9691 Processing chromosome C9691 INFO [2014-03-08 06:25:14,504] [Preprocessor.java:241] [main] Processing chromosome C9751 Processing chromosome C9751 INFO [2014-03-08 06:25:14,564] [Preprocessor.java:241] [main] Processing chromosome C9757 Processing chromosome C9757 INFO [2014-03-08 06:25:14,591] [Preprocessor.java:241] [main] Processing chromosome C9761 Processing chromosome C9761 INFO [2014-03-08 06:25:14,655] [Preprocessor.java:241] [main] Processing chromosome C9795 Processing chromosome C9795 INFO [2014-03-08 06:25:14,684] [Preprocessor.java:241] [main] Processing chromosome C9809 Processing chromosome C9809 INFO [2014-03-08 06:25:14,753] [Preprocessor.java:241] [main] Processing chromosome C9815 Processing chromosome C9815 INFO [2014-03-08 06:25:14,852] [Preprocessor.java:241] [main] Processing chromosome C9823 Processing chromosome C9823 INFO [2014-03-08 06:25:14,929] [Preprocessor.java:241] [main] Processing chromosome C9835 Processing chromosome C9835 INFO [2014-03-08 06:25:14,955] [Preprocessor.java:241] [main] Processing chromosome C9879 Processing chromosome C9879 INFO [2014-03-08 06:25:15,029] [Preprocessor.java:241] [main] Processing chromosome C9917 Processing chromosome C9917 INFO [2014-03-08 06:25:15,095] [Preprocessor.java:241] [main] Processing chromosome C9947 Processing chromosome C9947 INFO [2014-03-08 06:25:15,150] [Preprocessor.java:241] [main] Processing chromosome C9949 Processing chromosome C9949 INFO [2014-03-08 06:25:15,196] [Preprocessor.java:241] [main] Processing chromosome C9951 Processing chromosome C9951 INFO [2014-03-08 06:25:15,266] [Preprocessor.java:241] [main] Processing chromosome C9963 Processing chromosome C9963 INFO [2014-03-08 06:25:15,304] [Preprocessor.java:241] [main] Processing chromosome C9971 Processing chromosome C9971 INFO [2014-03-08 06:25:15,329] [Preprocessor.java:241] [main] Processing chromosome scaffold1 Processing chromosome scaffold1 INFO [2014-03-08 06:25:15,371] [Preprocessor.java:241] [main] Processing chromosome scaffold10 Processing chromosome scaffold10 INFO [2014-03-08 06:25:15,432] [Preprocessor.java:241] [main] Processing chromosome scaffold100 Processing chromosome scaffold100 INFO [2014-03-08 06:25:15,639] [Preprocessor.java:241] [main] Processing chromosome scaffold1000 Processing chromosome scaffold1000 INFO [2014-03-08 06:25:15,752] [Preprocessor.java:241] [main] Processing chromosome scaffold1001 Processing chromosome scaffold1001 INFO [2014-03-08 06:25:15,813] [Preprocessor.java:241] [main] Processing chromosome scaffold1002 Processing chromosome scaffold1002 INFO [2014-03-08 06:25:15,845] [Preprocessor.java:241] [main] Processing chromosome scaffold1004 Processing chromosome scaffold1004 INFO [2014-03-08 06:25:15,956] [Preprocessor.java:241] [main] Processing chromosome scaffold1005 Processing chromosome scaffold1005 INFO [2014-03-08 06:25:15,972] [Preprocessor.java:241] [main] Processing chromosome scaffold1006 Processing chromosome scaffold1006 INFO [2014-03-08 06:25:15,984] [Preprocessor.java:241] [main] Processing chromosome scaffold1008 Processing chromosome scaffold1008 INFO [2014-03-08 06:25:15,991] [Preprocessor.java:241] [main] Processing chromosome scaffold1009 Processing chromosome scaffold1009 .INFO [2014-03-08 06:25:16,308] [Preprocessor.java:241] [main] Processing chromosome scaffold101 Processing chromosome scaffold101 INFO [2014-03-08 06:25:16,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1010 Processing chromosome scaffold1010 INFO [2014-03-08 06:25:16,468] [Preprocessor.java:241] [main] Processing chromosome scaffold1011 Processing chromosome scaffold1011 INFO [2014-03-08 06:25:16,483] [Preprocessor.java:241] [main] Processing chromosome scaffold1014 Processing chromosome scaffold1014 INFO [2014-03-08 06:25:16,607] [Preprocessor.java:241] [main] Processing chromosome scaffold1016 Processing chromosome scaffold1016 INFO [2014-03-08 06:25:16,654] [Preprocessor.java:241] [main] Processing chromosome scaffold1017 Processing chromosome scaffold1017 INFO [2014-03-08 06:25:17,007] [Preprocessor.java:241] [main] Processing chromosome scaffold1018 Processing chromosome scaffold1018 INFO [2014-03-08 06:25:17,163] [Preprocessor.java:241] [main] Processing chromosome scaffold102 Processing chromosome scaffold102 INFO [2014-03-08 06:25:17,517] [Preprocessor.java:241] [main] Processing chromosome scaffold1020 Processing chromosome scaffold1020 INFO [2014-03-08 06:25:17,550] [Preprocessor.java:241] [main] Processing chromosome scaffold1021 Processing chromosome scaffold1021 INFO [2014-03-08 06:25:17,656] [Preprocessor.java:241] [main] Processing chromosome scaffold1022 Processing chromosome scaffold1022 INFO [2014-03-08 06:25:17,665] [Preprocessor.java:241] [main] Processing chromosome scaffold1024 Processing chromosome scaffold1024 INFO [2014-03-08 06:25:17,966] [Preprocessor.java:241] [main] Processing chromosome scaffold1026 Processing chromosome scaffold1026 INFO [2014-03-08 06:25:18,001] [Preprocessor.java:241] [main] Processing chromosome scaffold1027 Processing chromosome scaffold1027 INFO [2014-03-08 06:25:18,078] [Preprocessor.java:241] [main] Processing chromosome scaffold1028 Processing chromosome scaffold1028 INFO [2014-03-08 06:25:18,161] [Preprocessor.java:241] [main] Processing chromosome scaffold1029 Processing chromosome scaffold1029 INFO [2014-03-08 06:25:18,174] [Preprocessor.java:241] [main] Processing chromosome scaffold103 Processing chromosome scaffold103 INFO [2014-03-08 06:25:18,199] [Preprocessor.java:241] [main] Processing chromosome scaffold1030 Processing chromosome scaffold1030 INFO [2014-03-08 06:25:18,234] [Preprocessor.java:241] [main] Processing chromosome scaffold1031 Processing chromosome scaffold1031 INFO [2014-03-08 06:25:18,417] [Preprocessor.java:241] [main] Processing chromosome scaffold1032 Processing chromosome scaffold1032 INFO [2014-03-08 06:25:18,652] [Preprocessor.java:241] [main] Processing chromosome scaffold1033 Processing chromosome scaffold1033 INFO [2014-03-08 06:25:18,680] [Preprocessor.java:241] [main] Processing chromosome scaffold1034 Processing chromosome scaffold1034 INFO [2014-03-08 06:25:18,720] [Preprocessor.java:241] [main] Processing chromosome scaffold1035 Processing chromosome scaffold1035 INFO [2014-03-08 06:25:18,779] [Preprocessor.java:241] [main] Processing chromosome scaffold1036 Processing chromosome scaffold1036 INFO [2014-03-08 06:25:18,896] [Preprocessor.java:241] [main] Processing chromosome scaffold1037 Processing chromosome scaffold1037 INFO [2014-03-08 06:25:19,059] [Preprocessor.java:241] [main] Processing chromosome scaffold1038 Processing chromosome scaffold1038 INFO [2014-03-08 06:25:19,123] [Preprocessor.java:241] [main] Processing chromosome scaffold1039 Processing chromosome scaffold1039 INFO [2014-03-08 06:25:19,138] [Preprocessor.java:241] [main] Processing chromosome scaffold104 Processing chromosome scaffold104 INFO [2014-03-08 06:25:19,145] [Preprocessor.java:241] [main] Processing chromosome scaffold1041 Processing chromosome scaffold1041 .INFO [2014-03-08 06:25:19,265] [Preprocessor.java:241] [main] Processing chromosome scaffold1042 Processing chromosome scaffold1042 INFO [2014-03-08 06:25:19,308] [Preprocessor.java:241] [main] Processing chromosome scaffold1043 Processing chromosome scaffold1043 INFO [2014-03-08 06:25:19,323] [Preprocessor.java:241] [main] Processing chromosome scaffold1044 Processing chromosome scaffold1044 INFO [2014-03-08 06:25:19,366] [Preprocessor.java:241] [main] Processing chromosome scaffold1045 Processing chromosome scaffold1045 INFO [2014-03-08 06:25:19,397] [Preprocessor.java:241] [main] Processing chromosome scaffold1047 Processing chromosome scaffold1047 INFO [2014-03-08 06:25:19,413] [Preprocessor.java:241] [main] Processing chromosome scaffold1048 Processing chromosome scaffold1048 INFO [2014-03-08 06:25:19,421] [Preprocessor.java:241] [main] Processing chromosome scaffold105 Processing chromosome scaffold105 INFO [2014-03-08 06:25:19,566] [Preprocessor.java:241] [main] Processing chromosome scaffold1050 Processing chromosome scaffold1050 INFO [2014-03-08 06:25:19,658] [Preprocessor.java:241] [main] Processing chromosome scaffold1051 Processing chromosome scaffold1051 INFO [2014-03-08 06:25:19,708] [Preprocessor.java:241] [main] Processing chromosome scaffold1052 Processing chromosome scaffold1052 INFO [2014-03-08 06:25:19,782] [Preprocessor.java:241] [main] Processing chromosome scaffold1053 Processing chromosome scaffold1053 INFO [2014-03-08 06:25:19,857] [Preprocessor.java:241] [main] Processing chromosome scaffold1054 Processing chromosome scaffold1054 INFO [2014-03-08 06:25:19,935] [Preprocessor.java:241] [main] Processing chromosome scaffold1055 Processing chromosome scaffold1055 INFO [2014-03-08 06:25:19,942] [Preprocessor.java:241] [main] Processing chromosome scaffold1056 Processing chromosome scaffold1056 INFO [2014-03-08 06:25:20,055] [Preprocessor.java:241] [main] Processing chromosome scaffold1057 Processing chromosome scaffold1057 INFO [2014-03-08 06:25:20,066] [Preprocessor.java:241] [main] Processing chromosome scaffold1058 Processing chromosome scaffold1058 INFO [2014-03-08 06:25:20,102] [Preprocessor.java:241] [main] Processing chromosome scaffold106 Processing chromosome scaffold106 INFO [2014-03-08 06:25:20,262] [Preprocessor.java:241] [main] Processing chromosome scaffold1061 Processing chromosome scaffold1061 INFO [2014-03-08 06:25:20,377] [Preprocessor.java:241] [main] Processing chromosome scaffold1062 Processing chromosome scaffold1062 INFO [2014-03-08 06:25:20,414] [Preprocessor.java:241] [main] Processing chromosome scaffold1064 Processing chromosome scaffold1064 INFO [2014-03-08 06:25:20,497] [Preprocessor.java:241] [main] Processing chromosome scaffold1066 Processing chromosome scaffold1066 INFO [2014-03-08 06:25:20,552] [Preprocessor.java:241] [main] Processing chromosome scaffold1067 Processing chromosome scaffold1067 INFO [2014-03-08 06:25:20,588] [Preprocessor.java:241] [main] Processing chromosome scaffold1068 Processing chromosome scaffold1068 INFO [2014-03-08 06:25:20,591] [Preprocessor.java:241] [main] Processing chromosome scaffold1069 Processing chromosome scaffold1069 INFO [2014-03-08 06:25:20,597] [Preprocessor.java:241] [main] Processing chromosome scaffold107 Processing chromosome scaffold107 INFO [2014-03-08 06:25:20,724] [Preprocessor.java:241] [main] Processing chromosome scaffold1070 Processing chromosome scaffold1070 INFO [2014-03-08 06:25:20,843] [Preprocessor.java:241] [main] Processing chromosome scaffold1072 Processing chromosome scaffold1072 INFO [2014-03-08 06:25:20,866] [Preprocessor.java:241] [main] Processing chromosome scaffold1073 Processing chromosome scaffold1073 INFO [2014-03-08 06:25:20,929] [Preprocessor.java:241] [main] Processing chromosome scaffold1074 Processing chromosome scaffold1074 INFO [2014-03-08 06:25:20,940] [Preprocessor.java:241] [main] Processing chromosome scaffold1075 Processing chromosome scaffold1075 INFO [2014-03-08 06:25:20,963] [Preprocessor.java:241] [main] Processing chromosome scaffold1077 Processing chromosome scaffold1077 INFO [2014-03-08 06:25:21,041] [Preprocessor.java:241] [main] Processing chromosome scaffold1078 Processing chromosome scaffold1078 INFO [2014-03-08 06:25:21,103] [Preprocessor.java:241] [main] Processing chromosome scaffold1080 Processing chromosome scaffold1080 INFO [2014-03-08 06:25:21,216] [Preprocessor.java:241] [main] Processing chromosome scaffold1081 Processing chromosome scaffold1081 INFO [2014-03-08 06:25:21,245] [Preprocessor.java:241] [main] Processing chromosome scaffold1082 Processing chromosome scaffold1082 INFO [2014-03-08 06:25:21,271] [Preprocessor.java:241] [main] Processing chromosome scaffold1083 Processing chromosome scaffold1083 INFO [2014-03-08 06:25:21,416] [Preprocessor.java:241] [main] Processing chromosome scaffold1084 Processing chromosome scaffold1084 INFO [2014-03-08 06:25:21,493] [Preprocessor.java:241] [main] Processing chromosome scaffold1085 Processing chromosome scaffold1085 INFO [2014-03-08 06:25:21,523] [Preprocessor.java:241] [main] Processing chromosome scaffold1086 Processing chromosome scaffold1086 INFO [2014-03-08 06:25:21,731] [Preprocessor.java:241] [main] Processing chromosome scaffold1087 Processing chromosome scaffold1087 INFO [2014-03-08 06:25:21,766] [Preprocessor.java:241] [main] Processing chromosome scaffold1088 Processing chromosome scaffold1088 INFO [2014-03-08 06:25:21,819] [Preprocessor.java:241] [main] Processing chromosome scaffold1089 Processing chromosome scaffold1089 INFO [2014-03-08 06:25:21,829] [Preprocessor.java:241] [main] Processing chromosome scaffold109 Processing chromosome scaffold109 INFO [2014-03-08 06:25:21,920] [Preprocessor.java:241] [main] Processing chromosome scaffold1090 Processing chromosome scaffold1090 INFO [2014-03-08 06:25:21,950] [Preprocessor.java:241] [main] Processing chromosome scaffold1091 Processing chromosome scaffold1091 INFO [2014-03-08 06:25:21,963] [Preprocessor.java:241] [main] Processing chromosome scaffold1092 Processing chromosome scaffold1092 INFO [2014-03-08 06:25:21,974] [Preprocessor.java:241] [main] Processing chromosome scaffold1093 Processing chromosome scaffold1093 INFO [2014-03-08 06:25:22,154] [Preprocessor.java:241] [main] Processing chromosome scaffold1094 Processing chromosome scaffold1094 INFO [2014-03-08 06:25:22,355] [Preprocessor.java:241] [main] Processing chromosome scaffold1095 Processing chromosome scaffold1095 INFO [2014-03-08 06:25:22,361] [Preprocessor.java:241] [main] Processing chromosome scaffold1096 Processing chromosome scaffold1096 INFO [2014-03-08 06:25:22,410] [Preprocessor.java:241] [main] Processing chromosome scaffold1097 Processing chromosome scaffold1097 INFO [2014-03-08 06:25:22,575] [Preprocessor.java:241] [main] Processing chromosome scaffold1098 Processing chromosome scaffold1098 INFO [2014-03-08 06:25:22,623] [Preprocessor.java:241] [main] Processing chromosome scaffold1099 Processing chromosome scaffold1099 INFO [2014-03-08 06:25:22,632] [Preprocessor.java:241] [main] Processing chromosome scaffold11 Processing chromosome scaffold11 INFO [2014-03-08 06:25:22,842] [Preprocessor.java:241] [main] Processing chromosome scaffold110 Processing chromosome scaffold110 INFO [2014-03-08 06:25:22,933] [Preprocessor.java:241] [main] Processing chromosome scaffold1100 Processing chromosome scaffold1100 INFO [2014-03-08 06:25:23,058] [Preprocessor.java:241] [main] Processing chromosome scaffold1101 Processing chromosome scaffold1101 INFO [2014-03-08 06:25:23,207] [Preprocessor.java:241] [main] Processing chromosome scaffold1102 Processing chromosome scaffold1102 INFO [2014-03-08 06:25:23,293] [Preprocessor.java:241] [main] Processing chromosome scaffold1103 Processing chromosome scaffold1103 INFO [2014-03-08 06:25:23,341] [Preprocessor.java:241] [main] Processing chromosome scaffold1104 Processing chromosome scaffold1104 INFO [2014-03-08 06:25:23,540] [Preprocessor.java:241] [main] Processing chromosome scaffold1105 Processing chromosome scaffold1105 INFO [2014-03-08 06:25:23,560] [Preprocessor.java:241] [main] Processing chromosome scaffold1106 Processing chromosome scaffold1106 INFO [2014-03-08 06:25:23,582] [Preprocessor.java:241] [main] Processing chromosome scaffold1107 Processing chromosome scaffold1107 INFO [2014-03-08 06:25:23,663] [Preprocessor.java:241] [main] Processing chromosome scaffold1108 Processing chromosome scaffold1108 .INFO [2014-03-08 06:25:23,836] [Preprocessor.java:241] [main] Processing chromosome scaffold1110 Processing chromosome scaffold1110 INFO [2014-03-08 06:25:23,853] [Preprocessor.java:241] [main] Processing chromosome scaffold1111 Processing chromosome scaffold1111 INFO [2014-03-08 06:25:23,887] [Preprocessor.java:241] [main] Processing chromosome scaffold1112 Processing chromosome scaffold1112 INFO [2014-03-08 06:25:23,938] [Preprocessor.java:241] [main] Processing chromosome scaffold1113 Processing chromosome scaffold1113 INFO [2014-03-08 06:25:23,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1114 Processing chromosome scaffold1114 INFO [2014-03-08 06:25:24,016] [Preprocessor.java:241] [main] Processing chromosome scaffold1115 Processing chromosome scaffold1115 INFO [2014-03-08 06:25:24,043] [Preprocessor.java:241] [main] Processing chromosome scaffold1116 Processing chromosome scaffold1116 INFO [2014-03-08 06:25:24,158] [Preprocessor.java:241] [main] Processing chromosome scaffold1117 Processing chromosome scaffold1117 INFO [2014-03-08 06:25:24,214] [Preprocessor.java:241] [main] Processing chromosome scaffold1118 Processing chromosome scaffold1118 INFO [2014-03-08 06:25:24,223] [Preprocessor.java:241] [main] Processing chromosome scaffold1119 Processing chromosome scaffold1119 INFO [2014-03-08 06:25:24,331] [Preprocessor.java:241] [main] Processing chromosome scaffold1120 Processing chromosome scaffold1120 INFO [2014-03-08 06:25:24,344] [Preprocessor.java:241] [main] Processing chromosome scaffold1121 Processing chromosome scaffold1121 INFO [2014-03-08 06:25:24,470] [Preprocessor.java:241] [main] Processing chromosome scaffold1122 Processing chromosome scaffold1122 INFO [2014-03-08 06:25:24,481] [Preprocessor.java:241] [main] Processing chromosome scaffold1123 Processing chromosome scaffold1123 INFO [2014-03-08 06:25:24,567] [Preprocessor.java:241] [main] Processing chromosome scaffold1124 Processing chromosome scaffold1124 INFO [2014-03-08 06:25:24,614] [Preprocessor.java:241] [main] Processing chromosome scaffold1125 Processing chromosome scaffold1125 INFO [2014-03-08 06:25:24,751] [Preprocessor.java:241] [main] Processing chromosome scaffold1127 Processing chromosome scaffold1127 INFO [2014-03-08 06:25:24,879] [Preprocessor.java:241] [main] Processing chromosome scaffold1128 Processing chromosome scaffold1128 INFO [2014-03-08 06:25:24,924] [Preprocessor.java:241] [main] Processing chromosome scaffold1129 Processing chromosome scaffold1129 INFO [2014-03-08 06:25:24,958] [Preprocessor.java:241] [main] Processing chromosome scaffold113 Processing chromosome scaffold113 INFO [2014-03-08 06:25:25,077] [Preprocessor.java:241] [main] Processing chromosome scaffold1131 Processing chromosome scaffold1131 INFO [2014-03-08 06:25:25,147] [Preprocessor.java:241] [main] Processing chromosome scaffold1132 Processing chromosome scaffold1132 INFO [2014-03-08 06:25:25,361] [Preprocessor.java:241] [main] Processing chromosome scaffold1133 Processing chromosome scaffold1133 INFO [2014-03-08 06:25:25,370] [Preprocessor.java:241] [main] Processing chromosome scaffold1134 Processing chromosome scaffold1134 INFO [2014-03-08 06:25:25,416] [Preprocessor.java:241] [main] Processing chromosome scaffold1135 Processing chromosome scaffold1135 INFO [2014-03-08 06:25:25,420] [Preprocessor.java:241] [main] Processing chromosome scaffold1136 Processing chromosome scaffold1136 INFO [2014-03-08 06:25:25,466] [Preprocessor.java:241] [main] Processing chromosome scaffold1137 Processing chromosome scaffold1137 INFO [2014-03-08 06:25:25,515] [Preprocessor.java:241] [main] Processing chromosome scaffold1138 Processing chromosome scaffold1138 INFO [2014-03-08 06:25:25,642] [Preprocessor.java:241] [main] Processing chromosome scaffold1139 Processing chromosome scaffold1139 INFO [2014-03-08 06:25:25,686] [Preprocessor.java:241] [main] Processing chromosome scaffold114 Processing chromosome scaffold114 INFO [2014-03-08 06:25:25,700] [Preprocessor.java:241] [main] Processing chromosome scaffold1140 Processing chromosome scaffold1140 INFO [2014-03-08 06:25:25,724] [Preprocessor.java:241] [main] Processing chromosome scaffold1141 Processing chromosome scaffold1141 INFO [2014-03-08 06:25:25,751] [Preprocessor.java:241] [main] Processing chromosome scaffold1142 Processing chromosome scaffold1142 INFO [2014-03-08 06:25:25,826] [Preprocessor.java:241] [main] Processing chromosome scaffold1143 Processing chromosome scaffold1143 INFO [2014-03-08 06:25:25,860] [Preprocessor.java:241] [main] Processing chromosome scaffold1144 Processing chromosome scaffold1144 INFO [2014-03-08 06:25:25,951] [Preprocessor.java:241] [main] Processing chromosome scaffold1147 Processing chromosome scaffold1147 INFO [2014-03-08 06:25:26,060] [Preprocessor.java:241] [main] Processing chromosome scaffold1148 Processing chromosome scaffold1148 INFO [2014-03-08 06:25:26,106] [Preprocessor.java:241] [main] Processing chromosome scaffold1149 Processing chromosome scaffold1149 INFO [2014-03-08 06:25:26,196] [Preprocessor.java:241] [main] Processing chromosome scaffold115 Processing chromosome scaffold115 INFO [2014-03-08 06:25:26,279] [Preprocessor.java:241] [main] Processing chromosome scaffold1150 Processing chromosome scaffold1150 INFO [2014-03-08 06:25:26,294] [Preprocessor.java:241] [main] Processing chromosome scaffold1152 Processing chromosome scaffold1152 INFO [2014-03-08 06:25:26,538] [Preprocessor.java:241] [main] Processing chromosome scaffold1154 Processing chromosome scaffold1154 INFO [2014-03-08 06:25:26,789] [Preprocessor.java:241] [main] Processing chromosome scaffold1155 Processing chromosome scaffold1155 INFO [2014-03-08 06:25:26,841] [Preprocessor.java:241] [main] Processing chromosome scaffold1156 Processing chromosome scaffold1156 INFO [2014-03-08 06:25:26,876] [Preprocessor.java:241] [main] Processing chromosome scaffold1157 Processing chromosome scaffold1157 INFO [2014-03-08 06:25:26,956] [Preprocessor.java:241] [main] Processing chromosome scaffold1159 Processing chromosome scaffold1159 INFO [2014-03-08 06:25:27,015] [Preprocessor.java:241] [main] Processing chromosome scaffold116 Processing chromosome scaffold116 INFO [2014-03-08 06:25:27,053] [Preprocessor.java:241] [main] Processing chromosome scaffold1160 Processing chromosome scaffold1160 INFO [2014-03-08 06:25:27,131] [Preprocessor.java:241] [main] Processing chromosome scaffold1161 Processing chromosome scaffold1161 INFO [2014-03-08 06:25:27,170] [Preprocessor.java:241] [main] Processing chromosome scaffold1163 Processing chromosome scaffold1163 INFO [2014-03-08 06:25:27,273] [Preprocessor.java:241] [main] Processing chromosome scaffold1164 Processing chromosome scaffold1164 INFO [2014-03-08 06:25:27,397] [Preprocessor.java:241] [main] Processing chromosome scaffold1166 Processing chromosome scaffold1166 INFO [2014-03-08 06:25:27,429] [Preprocessor.java:241] [main] Processing chromosome scaffold1168 Processing chromosome scaffold1168 INFO [2014-03-08 06:25:27,455] [Preprocessor.java:241] [main] Processing chromosome scaffold117 Processing chromosome scaffold117 INFO [2014-03-08 06:25:27,563] [Preprocessor.java:241] [main] Processing chromosome scaffold1170 Processing chromosome scaffold1170 INFO [2014-03-08 06:25:27,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1171 Processing chromosome scaffold1171 INFO [2014-03-08 06:25:27,618] [Preprocessor.java:241] [main] Processing chromosome scaffold1172 Processing chromosome scaffold1172 INFO [2014-03-08 06:25:27,698] [Preprocessor.java:241] [main] Processing chromosome scaffold1173 Processing chromosome scaffold1173 INFO [2014-03-08 06:25:27,732] [Preprocessor.java:241] [main] Processing chromosome scaffold1174 Processing chromosome scaffold1174 INFO [2014-03-08 06:25:27,971] [Preprocessor.java:241] [main] Processing chromosome scaffold1177 Processing chromosome scaffold1177 INFO [2014-03-08 06:25:28,022] [Preprocessor.java:241] [main] Processing chromosome scaffold1178 Processing chromosome scaffold1178 INFO [2014-03-08 06:25:28,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1179 Processing chromosome scaffold1179 .INFO [2014-03-08 06:25:28,300] [Preprocessor.java:241] [main] Processing chromosome scaffold118 Processing chromosome scaffold118 INFO [2014-03-08 06:25:28,345] [Preprocessor.java:241] [main] Processing chromosome scaffold1180 Processing chromosome scaffold1180 INFO [2014-03-08 06:25:28,407] [Preprocessor.java:241] [main] Processing chromosome scaffold1181 Processing chromosome scaffold1181 INFO [2014-03-08 06:25:28,441] [Preprocessor.java:241] [main] Processing chromosome scaffold1182 Processing chromosome scaffold1182 INFO [2014-03-08 06:25:28,466] [Preprocessor.java:241] [main] Processing chromosome scaffold1183 Processing chromosome scaffold1183 INFO [2014-03-08 06:25:28,503] [Preprocessor.java:241] [main] Processing chromosome scaffold1184 Processing chromosome scaffold1184 INFO [2014-03-08 06:25:28,525] [Preprocessor.java:241] [main] Processing chromosome scaffold1185 Processing chromosome scaffold1185 INFO [2014-03-08 06:25:28,614] [Preprocessor.java:241] [main] Processing chromosome scaffold1186 Processing chromosome scaffold1186 INFO [2014-03-08 06:25:28,649] [Preprocessor.java:241] [main] Processing chromosome scaffold1187 Processing chromosome scaffold1187 INFO [2014-03-08 06:25:28,675] [Preprocessor.java:241] [main] Processing chromosome scaffold1188 Processing chromosome scaffold1188 INFO [2014-03-08 06:25:28,854] [Preprocessor.java:241] [main] Processing chromosome scaffold1189 Processing chromosome scaffold1189 INFO [2014-03-08 06:25:29,037] [Preprocessor.java:241] [main] Processing chromosome scaffold119 Processing chromosome scaffold119 INFO [2014-03-08 06:25:29,076] [Preprocessor.java:241] [main] Processing chromosome scaffold1190 Processing chromosome scaffold1190 INFO [2014-03-08 06:25:29,093] [Preprocessor.java:241] [main] Processing chromosome scaffold1191 Processing chromosome scaffold1191 INFO [2014-03-08 06:25:29,138] [Preprocessor.java:241] [main] Processing chromosome scaffold1194 Processing chromosome scaffold1194 INFO [2014-03-08 06:25:29,162] [Preprocessor.java:241] [main] Processing chromosome scaffold1195 Processing chromosome scaffold1195 INFO [2014-03-08 06:25:29,264] [Preprocessor.java:241] [main] Processing chromosome scaffold1196 Processing chromosome scaffold1196 INFO [2014-03-08 06:25:29,296] [Preprocessor.java:241] [main] Processing chromosome scaffold1198 Processing chromosome scaffold1198 INFO [2014-03-08 06:25:29,308] [Preprocessor.java:241] [main] Processing chromosome scaffold1199 Processing chromosome scaffold1199 INFO [2014-03-08 06:25:29,343] [Preprocessor.java:241] [main] Processing chromosome scaffold12 Processing chromosome scaffold12 INFO [2014-03-08 06:25:29,533] [Preprocessor.java:241] [main] Processing chromosome scaffold120 Processing chromosome scaffold120 INFO [2014-03-08 06:25:29,659] [Preprocessor.java:241] [main] Processing chromosome scaffold1200 Processing chromosome scaffold1200 INFO [2014-03-08 06:25:29,702] [Preprocessor.java:241] [main] Processing chromosome scaffold1202 Processing chromosome scaffold1202 INFO [2014-03-08 06:25:29,711] [Preprocessor.java:241] [main] Processing chromosome scaffold1203 Processing chromosome scaffold1203 INFO [2014-03-08 06:25:29,843] [Preprocessor.java:241] [main] Processing chromosome scaffold1204 Processing chromosome scaffold1204 INFO [2014-03-08 06:25:29,901] [Preprocessor.java:241] [main] Processing chromosome scaffold1205 Processing chromosome scaffold1205 INFO [2014-03-08 06:25:29,930] [Preprocessor.java:241] [main] Processing chromosome scaffold1206 Processing chromosome scaffold1206 INFO [2014-03-08 06:25:29,945] [Preprocessor.java:241] [main] Processing chromosome scaffold1208 Processing chromosome scaffold1208 INFO [2014-03-08 06:25:29,958] [Preprocessor.java:241] [main] Processing chromosome scaffold1209 Processing chromosome scaffold1209 INFO [2014-03-08 06:25:30,001] [Preprocessor.java:241] [main] Processing chromosome scaffold121 Processing chromosome scaffold121 INFO [2014-03-08 06:25:30,297] [Preprocessor.java:241] [main] Processing chromosome scaffold1210 Processing chromosome scaffold1210 INFO [2014-03-08 06:25:30,437] [Preprocessor.java:241] [main] Processing chromosome scaffold1212 Processing chromosome scaffold1212 INFO [2014-03-08 06:25:30,533] [Preprocessor.java:241] [main] Processing chromosome scaffold1213 Processing chromosome scaffold1213 INFO [2014-03-08 06:25:30,911] [Preprocessor.java:241] [main] Processing chromosome scaffold1214 Processing chromosome scaffold1214 INFO [2014-03-08 06:25:30,986] [Preprocessor.java:241] [main] Processing chromosome scaffold1217 Processing chromosome scaffold1217 INFO [2014-03-08 06:25:31,050] [Preprocessor.java:241] [main] Processing chromosome scaffold1218 Processing chromosome scaffold1218 INFO [2014-03-08 06:25:31,061] [Preprocessor.java:241] [main] Processing chromosome scaffold1219 Processing chromosome scaffold1219 INFO [2014-03-08 06:25:31,338] [Preprocessor.java:241] [main] Processing chromosome scaffold122 Processing chromosome scaffold122 INFO [2014-03-08 06:25:31,429] [Preprocessor.java:241] [main] Processing chromosome scaffold1220 Processing chromosome scaffold1220 INFO [2014-03-08 06:25:31,479] [Preprocessor.java:241] [main] Processing chromosome scaffold1221 Processing chromosome scaffold1221 INFO [2014-03-08 06:25:31,582] [Preprocessor.java:241] [main] Processing chromosome scaffold1222 Processing chromosome scaffold1222 INFO [2014-03-08 06:25:31,700] [Preprocessor.java:241] [main] Processing chromosome scaffold1223 Processing chromosome scaffold1223 INFO [2014-03-08 06:25:31,730] [Preprocessor.java:241] [main] Processing chromosome scaffold1225 Processing chromosome scaffold1225 INFO [2014-03-08 06:25:31,755] [Preprocessor.java:241] [main] Processing chromosome scaffold1226 Processing chromosome scaffold1226 INFO [2014-03-08 06:25:31,889] [Preprocessor.java:241] [main] Processing chromosome scaffold1227 Processing chromosome scaffold1227 INFO [2014-03-08 06:25:31,975] [Preprocessor.java:241] [main] Processing chromosome scaffold1228 Processing chromosome scaffold1228 .INFO [2014-03-08 06:25:32,065] [Preprocessor.java:241] [main] Processing chromosome scaffold123 Processing chromosome scaffold123 INFO [2014-03-08 06:25:32,099] [Preprocessor.java:241] [main] Processing chromosome scaffold1230 Processing chromosome scaffold1230 INFO [2014-03-08 06:25:32,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1231 Processing chromosome scaffold1231 INFO [2014-03-08 06:25:32,190] [Preprocessor.java:241] [main] Processing chromosome scaffold1232 Processing chromosome scaffold1232 INFO [2014-03-08 06:25:32,341] [Preprocessor.java:241] [main] Processing chromosome scaffold1233 Processing chromosome scaffold1233 INFO [2014-03-08 06:25:32,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1234 Processing chromosome scaffold1234 INFO [2014-03-08 06:25:32,434] [Preprocessor.java:241] [main] Processing chromosome scaffold1235 Processing chromosome scaffold1235 INFO [2014-03-08 06:25:32,508] [Preprocessor.java:241] [main] Processing chromosome scaffold1236 Processing chromosome scaffold1236 INFO [2014-03-08 06:25:32,529] [Preprocessor.java:241] [main] Processing chromosome scaffold1237 Processing chromosome scaffold1237 INFO [2014-03-08 06:25:32,577] [Preprocessor.java:241] [main] Processing chromosome scaffold1238 Processing chromosome scaffold1238 INFO [2014-03-08 06:25:32,630] [Preprocessor.java:241] [main] Processing chromosome scaffold1240 Processing chromosome scaffold1240 INFO [2014-03-08 06:25:32,644] [Preprocessor.java:241] [main] Processing chromosome scaffold1241 Processing chromosome scaffold1241 INFO [2014-03-08 06:25:32,825] [Preprocessor.java:241] [main] Processing chromosome scaffold1242 Processing chromosome scaffold1242 INFO [2014-03-08 06:25:32,868] [Preprocessor.java:241] [main] Processing chromosome scaffold1243 Processing chromosome scaffold1243 INFO [2014-03-08 06:25:32,883] [Preprocessor.java:241] [main] Processing chromosome scaffold1244 Processing chromosome scaffold1244 INFO [2014-03-08 06:25:32,974] [Preprocessor.java:241] [main] Processing chromosome scaffold1245 Processing chromosome scaffold1245 INFO [2014-03-08 06:25:33,049] [Preprocessor.java:241] [main] Processing chromosome scaffold1246 Processing chromosome scaffold1246 INFO [2014-03-08 06:25:33,089] [Preprocessor.java:241] [main] Processing chromosome scaffold1247 Processing chromosome scaffold1247 INFO [2014-03-08 06:25:33,151] [Preprocessor.java:241] [main] Processing chromosome scaffold1249 Processing chromosome scaffold1249 INFO [2014-03-08 06:25:33,273] [Preprocessor.java:241] [main] Processing chromosome scaffold1250 Processing chromosome scaffold1250 INFO [2014-03-08 06:25:33,292] [Preprocessor.java:241] [main] Processing chromosome scaffold1251 Processing chromosome scaffold1251 INFO [2014-03-08 06:25:33,329] [Preprocessor.java:241] [main] Processing chromosome scaffold1252 Processing chromosome scaffold1252 INFO [2014-03-08 06:25:33,369] [Preprocessor.java:241] [main] Processing chromosome scaffold1253 Processing chromosome scaffold1253 INFO [2014-03-08 06:25:33,402] [Preprocessor.java:241] [main] Processing chromosome scaffold1254 Processing chromosome scaffold1254 INFO [2014-03-08 06:25:33,442] [Preprocessor.java:241] [main] Processing chromosome scaffold1255 Processing chromosome scaffold1255 INFO [2014-03-08 06:25:33,626] [Preprocessor.java:241] [main] Processing chromosome scaffold1256 Processing chromosome scaffold1256 INFO [2014-03-08 06:25:33,670] [Preprocessor.java:241] [main] Processing chromosome scaffold1257 Processing chromosome scaffold1257 INFO [2014-03-08 06:25:33,717] [Preprocessor.java:241] [main] Processing chromosome scaffold1258 Processing chromosome scaffold1258 INFO [2014-03-08 06:25:33,874] [Preprocessor.java:241] [main] Processing chromosome scaffold1259 Processing chromosome scaffold1259 INFO [2014-03-08 06:25:33,893] [Preprocessor.java:241] [main] Processing chromosome scaffold126 Processing chromosome scaffold126 INFO [2014-03-08 06:25:33,931] [Preprocessor.java:241] [main] Processing chromosome scaffold1260 Processing chromosome scaffold1260 INFO [2014-03-08 06:25:33,955] [Preprocessor.java:241] [main] Processing chromosome scaffold1261 Processing chromosome scaffold1261 INFO [2014-03-08 06:25:33,971] [Preprocessor.java:241] [main] Processing chromosome scaffold1262 Processing chromosome scaffold1262 INFO [2014-03-08 06:25:34,117] [Preprocessor.java:241] [main] Processing chromosome scaffold1263 Processing chromosome scaffold1263 INFO [2014-03-08 06:25:34,125] [Preprocessor.java:241] [main] Processing chromosome scaffold1264 Processing chromosome scaffold1264 INFO [2014-03-08 06:25:34,196] [Preprocessor.java:241] [main] Processing chromosome scaffold1266 Processing chromosome scaffold1266 INFO [2014-03-08 06:25:34,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1267 Processing chromosome scaffold1267 INFO [2014-03-08 06:25:34,363] [Preprocessor.java:241] [main] Processing chromosome scaffold1268 Processing chromosome scaffold1268 INFO [2014-03-08 06:25:34,384] [Preprocessor.java:241] [main] Processing chromosome scaffold1269 Processing chromosome scaffold1269 INFO [2014-03-08 06:25:34,391] [Preprocessor.java:241] [main] Processing chromosome scaffold127 Processing chromosome scaffold127 INFO [2014-03-08 06:25:34,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1270 Processing chromosome scaffold1270 INFO [2014-03-08 06:25:34,446] [Preprocessor.java:241] [main] Processing chromosome scaffold1271 Processing chromosome scaffold1271 INFO [2014-03-08 06:25:34,501] [Preprocessor.java:241] [main] Processing chromosome scaffold1272 Processing chromosome scaffold1272 INFO [2014-03-08 06:25:34,551] [Preprocessor.java:241] [main] Processing chromosome scaffold1273 Processing chromosome scaffold1273 INFO [2014-03-08 06:25:34,559] [Preprocessor.java:241] [main] Processing chromosome scaffold1276 Processing chromosome scaffold1276 INFO [2014-03-08 06:25:34,632] [Preprocessor.java:241] [main] Processing chromosome scaffold1277 Processing chromosome scaffold1277 INFO [2014-03-08 06:25:34,661] [Preprocessor.java:241] [main] Processing chromosome scaffold1278 Processing chromosome scaffold1278 INFO [2014-03-08 06:25:34,681] [Preprocessor.java:241] [main] Processing chromosome scaffold1279 Processing chromosome scaffold1279 INFO [2014-03-08 06:25:34,740] [Preprocessor.java:241] [main] Processing chromosome scaffold128 Processing chromosome scaffold128 INFO [2014-03-08 06:25:34,883] [Preprocessor.java:241] [main] Processing chromosome scaffold1280 Processing chromosome scaffold1280 INFO [2014-03-08 06:25:34,941] [Preprocessor.java:241] [main] Processing chromosome scaffold1281 Processing chromosome scaffold1281 INFO [2014-03-08 06:25:34,956] [Preprocessor.java:241] [main] Processing chromosome scaffold1282 Processing chromosome scaffold1282 INFO [2014-03-08 06:25:35,000] [Preprocessor.java:241] [main] Processing chromosome scaffold1283 Processing chromosome scaffold1283 INFO [2014-03-08 06:25:35,079] [Preprocessor.java:241] [main] Processing chromosome scaffold1284 Processing chromosome scaffold1284 INFO [2014-03-08 06:25:35,136] [Preprocessor.java:241] [main] Processing chromosome scaffold1286 Processing chromosome scaffold1286 INFO [2014-03-08 06:25:35,232] [Preprocessor.java:241] [main] Processing chromosome scaffold1288 Processing chromosome scaffold1288 INFO [2014-03-08 06:25:35,350] [Preprocessor.java:241] [main] Processing chromosome scaffold1289 Processing chromosome scaffold1289 INFO [2014-03-08 06:25:35,391] [Preprocessor.java:241] [main] Processing chromosome scaffold129 Processing chromosome scaffold129 INFO [2014-03-08 06:25:35,405] [Preprocessor.java:241] [main] Processing chromosome scaffold1290 Processing chromosome scaffold1290 INFO [2014-03-08 06:25:35,462] [Preprocessor.java:241] [main] Processing chromosome scaffold1291 Processing chromosome scaffold1291 INFO [2014-03-08 06:25:35,472] [Preprocessor.java:241] [main] Processing chromosome scaffold1292 Processing chromosome scaffold1292 INFO [2014-03-08 06:25:35,489] [Preprocessor.java:241] [main] Processing chromosome scaffold1293 Processing chromosome scaffold1293 INFO [2014-03-08 06:25:35,576] [Preprocessor.java:241] [main] Processing chromosome scaffold1295 Processing chromosome scaffold1295 INFO [2014-03-08 06:25:35,621] [Preprocessor.java:241] [main] Processing chromosome scaffold1297 Processing chromosome scaffold1297 INFO [2014-03-08 06:25:35,704] [Preprocessor.java:241] [main] Processing chromosome scaffold1298 Processing chromosome scaffold1298 INFO [2014-03-08 06:25:35,757] [Preprocessor.java:241] [main] Processing chromosome scaffold1299 Processing chromosome scaffold1299 INFO [2014-03-08 06:25:35,850] [Preprocessor.java:241] [main] Processing chromosome scaffold13 Processing chromosome scaffold13 INFO [2014-03-08 06:25:35,929] [Preprocessor.java:241] [main] Processing chromosome scaffold130 Processing chromosome scaffold130 INFO [2014-03-08 06:25:35,976] [Preprocessor.java:241] [main] Processing chromosome scaffold1300 Processing chromosome scaffold1300 INFO [2014-03-08 06:25:36,011] [Preprocessor.java:241] [main] Processing chromosome scaffold1301 Processing chromosome scaffold1301 INFO [2014-03-08 06:25:36,395] [Preprocessor.java:241] [main] Processing chromosome scaffold1302 Processing chromosome scaffold1302 INFO [2014-03-08 06:25:36,463] [Preprocessor.java:241] [main] Processing chromosome scaffold1304 Processing chromosome scaffold1304 INFO [2014-03-08 06:25:36,521] [Preprocessor.java:241] [main] Processing chromosome scaffold1307 Processing chromosome scaffold1307 .INFO [2014-03-08 06:25:36,740] [Preprocessor.java:241] [main] Processing chromosome scaffold1308 Processing chromosome scaffold1308 INFO [2014-03-08 06:25:36,777] [Preprocessor.java:241] [main] Processing chromosome scaffold1309 Processing chromosome scaffold1309 INFO [2014-03-08 06:25:36,974] [Preprocessor.java:241] [main] Processing chromosome scaffold1310 Processing chromosome scaffold1310 INFO [2014-03-08 06:25:36,999] [Preprocessor.java:241] [main] Processing chromosome scaffold1311 Processing chromosome scaffold1311 INFO [2014-03-08 06:25:37,023] [Preprocessor.java:241] [main] Processing chromosome scaffold1312 Processing chromosome scaffold1312 INFO [2014-03-08 06:25:37,068] [Preprocessor.java:241] [main] Processing chromosome scaffold1314 Processing chromosome scaffold1314 INFO [2014-03-08 06:25:37,099] [Preprocessor.java:241] [main] Processing chromosome scaffold1315 Processing chromosome scaffold1315 INFO [2014-03-08 06:25:37,249] [Preprocessor.java:241] [main] Processing chromosome scaffold1316 Processing chromosome scaffold1316 INFO [2014-03-08 06:25:37,360] [Preprocessor.java:241] [main] Processing chromosome scaffold1317 Processing chromosome scaffold1317 INFO [2014-03-08 06:25:37,412] [Preprocessor.java:241] [main] Processing chromosome scaffold1318 Processing chromosome scaffold1318 INFO [2014-03-08 06:25:37,437] [Preprocessor.java:241] [main] Processing chromosome scaffold132 Processing chromosome scaffold132 INFO [2014-03-08 06:25:37,488] [Preprocessor.java:241] [main] Processing chromosome scaffold1320 Processing chromosome scaffold1320 INFO [2014-03-08 06:25:37,514] [Preprocessor.java:241] [main] Processing chromosome scaffold1321 Processing chromosome scaffold1321 INFO [2014-03-08 06:25:37,547] [Preprocessor.java:241] [main] Processing chromosome scaffold1322 Processing chromosome scaffold1322 INFO [2014-03-08 06:25:37,651] [Preprocessor.java:241] [main] Processing chromosome scaffold1323 Processing chromosome scaffold1323 INFO [2014-03-08 06:25:37,683] [Preprocessor.java:241] [main] Processing chromosome scaffold1324 Processing chromosome scaffold1324 INFO [2014-03-08 06:25:37,800] [Preprocessor.java:241] [main] Processing chromosome scaffold1325 Processing chromosome scaffold1325 INFO [2014-03-08 06:25:37,829] [Preprocessor.java:241] [main] Processing chromosome scaffold1326 Processing chromosome scaffold1326 INFO [2014-03-08 06:25:37,839] [Preprocessor.java:241] [main] Processing chromosome scaffold1327 Processing chromosome scaffold1327 INFO [2014-03-08 06:25:37,985] [Preprocessor.java:241] [main] Processing chromosome scaffold1328 Processing chromosome scaffold1328 INFO [2014-03-08 06:25:38,044] [Preprocessor.java:241] [main] Processing chromosome scaffold1329 Processing chromosome scaffold1329 INFO [2014-03-08 06:25:38,102] [Preprocessor.java:241] [main] Processing chromosome scaffold133 Processing chromosome scaffold133 INFO [2014-03-08 06:25:38,120] [Preprocessor.java:241] [main] Processing chromosome scaffold1330 Processing chromosome scaffold1330 INFO [2014-03-08 06:25:38,171] [Preprocessor.java:241] [main] Processing chromosome scaffold1331 Processing chromosome scaffold1331 INFO [2014-03-08 06:25:38,220] [Preprocessor.java:241] [main] Processing chromosome scaffold1333 Processing chromosome scaffold1333 INFO [2014-03-08 06:25:38,306] [Preprocessor.java:241] [main] Processing chromosome scaffold1334 Processing chromosome scaffold1334 INFO [2014-03-08 06:25:38,320] [Preprocessor.java:241] [main] Processing chromosome scaffold1335 Processing chromosome scaffold1335 INFO [2014-03-08 06:25:38,334] [Preprocessor.java:241] [main] Processing chromosome scaffold1336 Processing chromosome scaffold1336 INFO [2014-03-08 06:25:38,355] [Preprocessor.java:241] [main] Processing chromosome scaffold1337 Processing chromosome scaffold1337 INFO [2014-03-08 06:25:38,417] [Preprocessor.java:241] [main] Processing chromosome scaffold1338 Processing chromosome scaffold1338 INFO [2014-03-08 06:25:38,446] [Preprocessor.java:241] [main] Processing chromosome scaffold1339 Processing chromosome scaffold1339 INFO [2014-03-08 06:25:38,472] [Preprocessor.java:241] [main] Processing chromosome scaffold134 Processing chromosome scaffold134 INFO [2014-03-08 06:25:38,477] [Preprocessor.java:241] [main] Processing chromosome scaffold1340 Processing chromosome scaffold1340 INFO [2014-03-08 06:25:38,554] [Preprocessor.java:241] [main] Processing chromosome scaffold1341 Processing chromosome scaffold1341 INFO [2014-03-08 06:25:38,620] [Preprocessor.java:241] [main] Processing chromosome scaffold1342 Processing chromosome scaffold1342 INFO [2014-03-08 06:25:38,639] [Preprocessor.java:241] [main] Processing chromosome scaffold1343 Processing chromosome scaffold1343 INFO [2014-03-08 06:25:38,662] [Preprocessor.java:241] [main] Processing chromosome scaffold1344 Processing chromosome scaffold1344 INFO [2014-03-08 06:25:38,679] [Preprocessor.java:241] [main] Processing chromosome scaffold1345 Processing chromosome scaffold1345 INFO [2014-03-08 06:25:38,724] [Preprocessor.java:241] [main] Processing chromosome scaffold1346 Processing chromosome scaffold1346 INFO [2014-03-08 06:25:38,734] [Preprocessor.java:241] [main] Processing chromosome scaffold1347 Processing chromosome scaffold1347 INFO [2014-03-08 06:25:38,789] [Preprocessor.java:241] [main] Processing chromosome scaffold1348 Processing chromosome scaffold1348 INFO [2014-03-08 06:25:38,865] [Preprocessor.java:241] [main] Processing chromosome scaffold1349 Processing chromosome scaffold1349 INFO [2014-03-08 06:25:38,902] [Preprocessor.java:241] [main] Processing chromosome scaffold1350 Processing chromosome scaffold1350 INFO [2014-03-08 06:25:38,996] [Preprocessor.java:241] [main] Processing chromosome scaffold1351 Processing chromosome scaffold1351 INFO [2014-03-08 06:25:39,021] [Preprocessor.java:241] [main] Processing chromosome scaffold1352 Processing chromosome scaffold1352 INFO [2014-03-08 06:25:39,108] [Preprocessor.java:241] [main] Processing chromosome scaffold1353 Processing chromosome scaffold1353 INFO [2014-03-08 06:25:39,126] [Preprocessor.java:241] [main] Processing chromosome scaffold1354 Processing chromosome scaffold1354 INFO [2014-03-08 06:25:39,225] [Preprocessor.java:241] [main] Processing chromosome scaffold1355 Processing chromosome scaffold1355 INFO [2014-03-08 06:25:39,239] [Preprocessor.java:241] [main] Processing chromosome scaffold1357 Processing chromosome scaffold1357 INFO [2014-03-08 06:25:39,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1358 Processing chromosome scaffold1358 INFO [2014-03-08 06:25:39,319] [Preprocessor.java:241] [main] Processing chromosome scaffold1359 Processing chromosome scaffold1359 INFO [2014-03-08 06:25:39,415] [Preprocessor.java:241] [main] Processing chromosome scaffold1360 Processing chromosome scaffold1360 INFO [2014-03-08 06:25:39,541] [Preprocessor.java:241] [main] Processing chromosome scaffold1361 Processing chromosome scaffold1361 INFO [2014-03-08 06:25:39,580] [Preprocessor.java:241] [main] Processing chromosome scaffold1362 Processing chromosome scaffold1362 INFO [2014-03-08 06:25:39,754] [Preprocessor.java:241] [main] Processing chromosome scaffold1363 Processing chromosome scaffold1363 INFO [2014-03-08 06:25:39,790] [Preprocessor.java:241] [main] Processing chromosome scaffold1364 Processing chromosome scaffold1364 INFO [2014-03-08 06:25:39,836] [Preprocessor.java:241] [main] Processing chromosome scaffold1365 Processing chromosome scaffold1365 INFO [2014-03-08 06:25:39,877] [Preprocessor.java:241] [main] Processing chromosome scaffold1366 Processing chromosome scaffold1366 INFO [2014-03-08 06:25:39,967] [Preprocessor.java:241] [main] Processing chromosome scaffold1367 Processing chromosome scaffold1367 INFO [2014-03-08 06:25:39,974] [Preprocessor.java:241] [main] Processing chromosome scaffold1368 Processing chromosome scaffold1368 INFO [2014-03-08 06:25:39,996] [Preprocessor.java:241] [main] Processing chromosome scaffold1369 Processing chromosome scaffold1369 INFO [2014-03-08 06:25:40,030] [Preprocessor.java:241] [main] Processing chromosome scaffold137 Processing chromosome scaffold137 INFO [2014-03-08 06:25:40,060] [Preprocessor.java:241] [main] Processing chromosome scaffold1370 Processing chromosome scaffold1370 INFO [2014-03-08 06:25:40,106] [Preprocessor.java:241] [main] Processing chromosome scaffold1371 Processing chromosome scaffold1371 INFO [2014-03-08 06:25:40,148] [Preprocessor.java:241] [main] Processing chromosome scaffold1372 Processing chromosome scaffold1372 INFO [2014-03-08 06:25:40,302] [Preprocessor.java:241] [main] Processing chromosome scaffold1373 Processing chromosome scaffold1373 INFO [2014-03-08 06:25:40,349] [Preprocessor.java:241] [main] Processing chromosome scaffold1374 Processing chromosome scaffold1374 INFO [2014-03-08 06:25:40,366] [Preprocessor.java:241] [main] Processing chromosome scaffold1375 Processing chromosome scaffold1375 INFO [2014-03-08 06:25:40,419] [Preprocessor.java:241] [main] Processing chromosome scaffold1376 Processing chromosome scaffold1376 INFO [2014-03-08 06:25:40,446] [Preprocessor.java:241] [main] Processing chromosome scaffold1377 Processing chromosome scaffold1377 INFO [2014-03-08 06:25:40,470] [Preprocessor.java:241] [main] Processing chromosome scaffold1378 Processing chromosome scaffold1378 INFO [2014-03-08 06:25:40,484] [Preprocessor.java:241] [main] Processing chromosome scaffold1379 Processing chromosome scaffold1379 INFO [2014-03-08 06:25:40,490] [Preprocessor.java:241] [main] Processing chromosome scaffold138 Processing chromosome scaffold138 INFO [2014-03-08 06:25:40,533] [Preprocessor.java:241] [main] Processing chromosome scaffold1380 Processing chromosome scaffold1380 INFO [2014-03-08 06:25:40,546] [Preprocessor.java:241] [main] Processing chromosome scaffold1381 Processing chromosome scaffold1381 INFO [2014-03-08 06:25:40,560] [Preprocessor.java:241] [main] Processing chromosome scaffold1382 Processing chromosome scaffold1382 INFO [2014-03-08 06:25:40,610] [Preprocessor.java:241] [main] Processing chromosome scaffold1383 Processing chromosome scaffold1383 INFO [2014-03-08 06:25:40,629] [Preprocessor.java:241] [main] Processing chromosome scaffold1384 Processing chromosome scaffold1384 INFO [2014-03-08 06:25:40,657] [Preprocessor.java:241] [main] Processing chromosome scaffold1385 Processing chromosome scaffold1385 INFO [2014-03-08 06:25:40,799] [Preprocessor.java:241] [main] Processing chromosome scaffold1386 Processing chromosome scaffold1386 INFO [2014-03-08 06:25:40,855] [Preprocessor.java:241] [main] Processing chromosome scaffold1388 Processing chromosome scaffold1388 INFO [2014-03-08 06:25:40,887] [Preprocessor.java:241] [main] Processing chromosome scaffold1389 Processing chromosome scaffold1389 INFO [2014-03-08 06:25:40,914] [Preprocessor.java:241] [main] Processing chromosome scaffold139 Processing chromosome scaffold139 INFO [2014-03-08 06:25:40,941] [Preprocessor.java:241] [main] Processing chromosome scaffold1390 Processing chromosome scaffold1390 INFO [2014-03-08 06:25:40,978] [Preprocessor.java:241] [main] Processing chromosome scaffold1391 Processing chromosome scaffold1391 .INFO [2014-03-08 06:25:41,132] [Preprocessor.java:241] [main] Processing chromosome scaffold1392 Processing chromosome scaffold1392 INFO [2014-03-08 06:25:41,160] [Preprocessor.java:241] [main] Processing chromosome scaffold1393 Processing chromosome scaffold1393 INFO [2014-03-08 06:25:41,209] [Preprocessor.java:241] [main] Processing chromosome scaffold1394 Processing chromosome scaffold1394 INFO [2014-03-08 06:25:41,235] [Preprocessor.java:241] [main] Processing chromosome scaffold1395 Processing chromosome scaffold1395 INFO [2014-03-08 06:25:41,247] [Preprocessor.java:241] [main] Processing chromosome scaffold1396 Processing chromosome scaffold1396 INFO [2014-03-08 06:25:41,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1397 Processing chromosome scaffold1397 INFO [2014-03-08 06:25:41,352] [Preprocessor.java:241] [main] Processing chromosome scaffold1399 Processing chromosome scaffold1399 INFO [2014-03-08 06:25:41,424] [Preprocessor.java:241] [main] Processing chromosome scaffold140 Processing chromosome scaffold140 INFO [2014-03-08 06:25:41,531] [Preprocessor.java:241] [main] Processing chromosome scaffold1400 Processing chromosome scaffold1400 INFO [2014-03-08 06:25:41,613] [Preprocessor.java:241] [main] Processing chromosome scaffold1401 Processing chromosome scaffold1401 INFO [2014-03-08 06:25:41,649] [Preprocessor.java:241] [main] Processing chromosome scaffold1402 Processing chromosome scaffold1402 INFO [2014-03-08 06:25:41,746] [Preprocessor.java:241] [main] Processing chromosome scaffold1403 Processing chromosome scaffold1403 INFO [2014-03-08 06:25:41,837] [Preprocessor.java:241] [main] Processing chromosome scaffold1404 Processing chromosome scaffold1404 INFO [2014-03-08 06:25:41,925] [Preprocessor.java:241] [main] Processing chromosome scaffold1405 Processing chromosome scaffold1405 INFO [2014-03-08 06:25:41,950] [Preprocessor.java:241] [main] Processing chromosome scaffold1408 Processing chromosome scaffold1408 INFO [2014-03-08 06:25:41,972] [Preprocessor.java:241] [main] Processing chromosome scaffold1409 Processing chromosome scaffold1409 INFO [2014-03-08 06:25:42,092] [Preprocessor.java:241] [main] Processing chromosome scaffold141 Processing chromosome scaffold141 INFO [2014-03-08 06:25:42,175] [Preprocessor.java:241] [main] Processing chromosome scaffold1410 Processing chromosome scaffold1410 INFO [2014-03-08 06:25:42,249] [Preprocessor.java:241] [main] Processing chromosome scaffold1411 Processing chromosome scaffold1411 INFO [2014-03-08 06:25:42,314] [Preprocessor.java:241] [main] Processing chromosome scaffold1413 Processing chromosome scaffold1413 INFO [2014-03-08 06:25:42,356] [Preprocessor.java:241] [main] Processing chromosome scaffold1414 Processing chromosome scaffold1414 INFO [2014-03-08 06:25:42,410] [Preprocessor.java:241] [main] Processing chromosome scaffold1415 Processing chromosome scaffold1415 INFO [2014-03-08 06:25:42,600] [Preprocessor.java:241] [main] Processing chromosome scaffold1416 Processing chromosome scaffold1416 INFO [2014-03-08 06:25:42,689] [Preprocessor.java:241] [main] Processing chromosome scaffold1417 Processing chromosome scaffold1417 INFO [2014-03-08 06:25:42,715] [Preprocessor.java:241] [main] Processing chromosome scaffold1418 Processing chromosome scaffold1418 INFO [2014-03-08 06:25:42,734] [Preprocessor.java:241] [main] Processing chromosome scaffold1419 Processing chromosome scaffold1419 INFO [2014-03-08 06:25:42,880] [Preprocessor.java:241] [main] Processing chromosome scaffold142 Processing chromosome scaffold142 INFO [2014-03-08 06:25:43,093] [Preprocessor.java:241] [main] Processing chromosome scaffold1420 Processing chromosome scaffold1420 INFO [2014-03-08 06:25:43,139] [Preprocessor.java:241] [main] Processing chromosome scaffold1421 Processing chromosome scaffold1421 INFO [2014-03-08 06:25:43,213] [Preprocessor.java:241] [main] Processing chromosome scaffold1422 Processing chromosome scaffold1422 INFO [2014-03-08 06:25:43,225] [Preprocessor.java:241] [main] Processing chromosome scaffold1423 Processing chromosome scaffold1423 INFO [2014-03-08 06:25:43,448] [Preprocessor.java:241] [main] Processing chromosome scaffold1424 Processing chromosome scaffold1424 INFO [2014-03-08 06:25:43,476] [Preprocessor.java:241] [main] Processing chromosome scaffold1425 Processing chromosome scaffold1425 INFO [2014-03-08 06:25:43,524] [Preprocessor.java:241] [main] Processing chromosome scaffold1426 Processing chromosome scaffold1426 INFO [2014-03-08 06:25:43,597] [Preprocessor.java:241] [main] Processing chromosome scaffold1427 Processing chromosome scaffold1427 INFO [2014-03-08 06:25:43,655] [Preprocessor.java:241] [main] Processing chromosome scaffold1428 Processing chromosome scaffold1428 INFO [2014-03-08 06:25:43,672] [Preprocessor.java:241] [main] Processing chromosome scaffold1429 Processing chromosome scaffold1429 INFO [2014-03-08 06:25:43,685] [Preprocessor.java:241] [main] Processing chromosome scaffold143 Processing chromosome scaffold143 INFO [2014-03-08 06:25:43,789] [Preprocessor.java:241] [main] Processing chromosome scaffold1431 Processing chromosome scaffold1431 INFO [2014-03-08 06:25:43,862] [Preprocessor.java:241] [main] Processing chromosome scaffold1433 Processing chromosome scaffold1433 INFO [2014-03-08 06:25:43,909] [Preprocessor.java:241] [main] Processing chromosome scaffold1435 Processing chromosome scaffold1435 INFO [2014-03-08 06:25:43,948] [Preprocessor.java:241] [main] Processing chromosome scaffold1436 Processing chromosome scaffold1436 INFO [2014-03-08 06:25:43,971] [Preprocessor.java:241] [main] Processing chromosome scaffold1437 Processing chromosome scaffold1437 INFO [2014-03-08 06:25:44,027] [Preprocessor.java:241] [main] Processing chromosome scaffold1438 Processing chromosome scaffold1438 INFO [2014-03-08 06:25:44,057] [Preprocessor.java:241] [main] Processing chromosome scaffold1439 Processing chromosome scaffold1439 INFO [2014-03-08 06:25:44,080] [Preprocessor.java:241] [main] Processing chromosome scaffold144 Processing chromosome scaffold144 INFO [2014-03-08 06:25:44,178] [Preprocessor.java:241] [main] Processing chromosome scaffold1440 Processing chromosome scaffold1440 INFO [2014-03-08 06:25:44,216] [Preprocessor.java:241] [main] Processing chromosome scaffold1441 Processing chromosome scaffold1441 INFO [2014-03-08 06:25:44,255] [Preprocessor.java:241] [main] Processing chromosome scaffold1442 Processing chromosome scaffold1442 INFO [2014-03-08 06:25:44,285] [Preprocessor.java:241] [main] Processing chromosome scaffold1443 Processing chromosome scaffold1443 INFO [2014-03-08 06:25:44,295] [Preprocessor.java:241] [main] Processing chromosome scaffold1445 Processing chromosome scaffold1445 INFO [2014-03-08 06:25:44,347] [Preprocessor.java:241] [main] Processing chromosome scaffold1446 Processing chromosome scaffold1446 INFO [2014-03-08 06:25:44,393] [Preprocessor.java:241] [main] Processing chromosome scaffold1447 Processing chromosome scaffold1447 INFO [2014-03-08 06:25:44,465] [Preprocessor.java:241] [main] Processing chromosome scaffold1448 Processing chromosome scaffold1448 INFO [2014-03-08 06:25:44,509] [Preprocessor.java:241] [main] Processing chromosome scaffold1449 Processing chromosome scaffold1449 INFO [2014-03-08 06:25:44,555] [Preprocessor.java:241] [main] Processing chromosome scaffold145 Processing chromosome scaffold145 INFO [2014-03-08 06:25:44,707] [Preprocessor.java:241] [main] Processing chromosome scaffold1450 Processing chromosome scaffold1450 INFO [2014-03-08 06:25:44,730] [Preprocessor.java:241] [main] Processing chromosome scaffold1451 Processing chromosome scaffold1451 INFO [2014-03-08 06:25:44,771] [Preprocessor.java:241] [main] Processing chromosome scaffold1452 Processing chromosome scaffold1452 INFO [2014-03-08 06:25:44,825] [Preprocessor.java:241] [main] Processing chromosome scaffold1453 Processing chromosome scaffold1453 INFO [2014-03-08 06:25:44,837] [Preprocessor.java:241] [main] Processing chromosome scaffold1454 Processing chromosome scaffold1454 INFO [2014-03-08 06:25:44,859] [Preprocessor.java:241] [main] Processing chromosome scaffold1455 Processing chromosome scaffold1455 INFO [2014-03-08 06:25:44,912] [Preprocessor.java:241] [main] Processing chromosome scaffold1456 Processing chromosome scaffold1456 INFO [2014-03-08 06:25:44,944] [Preprocessor.java:241] [main] Processing chromosome scaffold1458 Processing chromosome scaffold1458 INFO [2014-03-08 06:25:44,981] [Preprocessor.java:241] [main] Processing chromosome scaffold1459 Processing chromosome scaffold1459 INFO [2014-03-08 06:25:45,091] [Preprocessor.java:241] [main] Processing chromosome scaffold146 Processing chromosome scaffold146 INFO [2014-03-08 06:25:45,280] [Preprocessor.java:241] [main] Processing chromosome scaffold1460 Processing chromosome scaffold1460 INFO [2014-03-08 06:25:45,305] [Preprocessor.java:241] [main] Processing chromosome scaffold1461 Processing chromosome scaffold1461 INFO [2014-03-08 06:25:45,349] [Preprocessor.java:241] [main] Processing chromosome scaffold1462 Processing chromosome scaffold1462 INFO [2014-03-08 06:25:45,530] [Preprocessor.java:241] [main] Processing chromosome scaffold1463 Processing chromosome scaffold1463 INFO [2014-03-08 06:25:45,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1464 Processing chromosome scaffold1464 INFO [2014-03-08 06:25:45,613] [Preprocessor.java:241] [main] Processing chromosome scaffold1466 Processing chromosome scaffold1466 INFO [2014-03-08 06:25:45,665] [Preprocessor.java:241] [main] Processing chromosome scaffold1467 Processing chromosome scaffold1467 INFO [2014-03-08 06:25:45,751] [Preprocessor.java:241] [main] Processing chromosome scaffold1468 Processing chromosome scaffold1468 INFO [2014-03-08 06:25:45,818] [Preprocessor.java:241] [main] Processing chromosome scaffold1469 Processing chromosome scaffold1469 INFO [2014-03-08 06:25:45,934] [Preprocessor.java:241] [main] Processing chromosome scaffold1470 Processing chromosome scaffold1470 INFO [2014-03-08 06:25:45,967] [Preprocessor.java:241] [main] Processing chromosome scaffold1471 Processing chromosome scaffold1471 INFO [2014-03-08 06:25:45,986] [Preprocessor.java:241] [main] Processing chromosome scaffold1472 Processing chromosome scaffold1472 INFO [2014-03-08 06:25:46,022] [Preprocessor.java:241] [main] Processing chromosome scaffold1473 Processing chromosome scaffold1473 INFO [2014-03-08 06:25:46,040] [Preprocessor.java:241] [main] Processing chromosome scaffold1474 Processing chromosome scaffold1474 INFO [2014-03-08 06:25:46,048] [Preprocessor.java:241] [main] Processing chromosome scaffold1475 Processing chromosome scaffold1475 INFO [2014-03-08 06:25:46,093] [Preprocessor.java:241] [main] Processing chromosome scaffold1476 Processing chromosome scaffold1476 INFO [2014-03-08 06:25:46,152] [Preprocessor.java:241] [main] Processing chromosome scaffold1477 Processing chromosome scaffold1477 INFO [2014-03-08 06:25:46,172] [Preprocessor.java:241] [main] Processing chromosome scaffold1478 Processing chromosome scaffold1478 INFO [2014-03-08 06:25:46,194] [Preprocessor.java:241] [main] Processing chromosome scaffold148 Processing chromosome scaffold148 INFO [2014-03-08 06:25:46,234] [Preprocessor.java:241] [main] Processing chromosome scaffold1480 Processing chromosome scaffold1480 INFO [2014-03-08 06:25:46,262] [Preprocessor.java:241] [main] Processing chromosome scaffold1481 Processing chromosome scaffold1481 INFO [2014-03-08 06:25:46,298] [Preprocessor.java:241] [main] Processing chromosome scaffold1483 Processing chromosome scaffold1483 INFO [2014-03-08 06:25:46,319] [Preprocessor.java:241] [main] Processing chromosome scaffold1484 Processing chromosome scaffold1484 .INFO [2014-03-08 06:25:46,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1485 Processing chromosome scaffold1485 INFO [2014-03-08 06:25:46,418] [Preprocessor.java:241] [main] Processing chromosome scaffold1486 Processing chromosome scaffold1486 INFO [2014-03-08 06:25:46,429] [Preprocessor.java:241] [main] Processing chromosome scaffold1488 Processing chromosome scaffold1488 INFO [2014-03-08 06:25:46,464] [Preprocessor.java:241] [main] Processing chromosome scaffold1489 Processing chromosome scaffold1489 INFO [2014-03-08 06:25:46,507] [Preprocessor.java:241] [main] Processing chromosome scaffold149 Processing chromosome scaffold149 INFO [2014-03-08 06:25:46,650] [Preprocessor.java:241] [main] Processing chromosome scaffold1490 Processing chromosome scaffold1490 INFO [2014-03-08 06:25:46,799] [Preprocessor.java:241] [main] Processing chromosome scaffold1491 Processing chromosome scaffold1491 INFO [2014-03-08 06:25:46,869] [Preprocessor.java:241] [main] Processing chromosome scaffold1492 Processing chromosome scaffold1492 INFO [2014-03-08 06:25:46,981] [Preprocessor.java:241] [main] Processing chromosome scaffold1493 Processing chromosome scaffold1493 INFO [2014-03-08 06:25:47,039] [Preprocessor.java:241] [main] Processing chromosome scaffold1494 Processing chromosome scaffold1494 INFO [2014-03-08 06:25:47,094] [Preprocessor.java:241] [main] Processing chromosome scaffold1495 Processing chromosome scaffold1495 INFO [2014-03-08 06:25:47,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1496 Processing chromosome scaffold1496 INFO [2014-03-08 06:25:47,176] [Preprocessor.java:241] [main] Processing chromosome scaffold1497 Processing chromosome scaffold1497 INFO [2014-03-08 06:25:47,247] [Preprocessor.java:241] [main] Processing chromosome scaffold1498 Processing chromosome scaffold1498 INFO [2014-03-08 06:25:47,284] [Preprocessor.java:241] [main] Processing chromosome scaffold1499 Processing chromosome scaffold1499 INFO [2014-03-08 06:25:47,305] [Preprocessor.java:241] [main] Processing chromosome scaffold15 Processing chromosome scaffold15 INFO [2014-03-08 06:25:47,313] [Preprocessor.java:241] [main] Processing chromosome scaffold150 Processing chromosome scaffold150 INFO [2014-03-08 06:25:47,627] [Preprocessor.java:241] [main] Processing chromosome scaffold1500 Processing chromosome scaffold1500 INFO [2014-03-08 06:25:47,647] [Preprocessor.java:241] [main] Processing chromosome scaffold1501 Processing chromosome scaffold1501 INFO [2014-03-08 06:25:47,720] [Preprocessor.java:241] [main] Processing chromosome scaffold1502 Processing chromosome scaffold1502 INFO [2014-03-08 06:25:47,760] [Preprocessor.java:241] [main] Processing chromosome scaffold1503 Processing chromosome scaffold1503 INFO [2014-03-08 06:25:47,854] [Preprocessor.java:241] [main] Processing chromosome scaffold1504 Processing chromosome scaffold1504 INFO [2014-03-08 06:25:47,859] [Preprocessor.java:241] [main] Processing chromosome scaffold1505 Processing chromosome scaffold1505 INFO [2014-03-08 06:25:47,883] [Preprocessor.java:241] [main] Processing chromosome scaffold1506 Processing chromosome scaffold1506 INFO [2014-03-08 06:25:47,914] [Preprocessor.java:241] [main] Processing chromosome scaffold1507 Processing chromosome scaffold1507 INFO [2014-03-08 06:25:47,946] [Preprocessor.java:241] [main] Processing chromosome scaffold1508 Processing chromosome scaffold1508 INFO [2014-03-08 06:25:48,016] [Preprocessor.java:241] [main] Processing chromosome scaffold1509 Processing chromosome scaffold1509 INFO [2014-03-08 06:25:48,038] [Preprocessor.java:241] [main] Processing chromosome scaffold1511 Processing chromosome scaffold1511 INFO [2014-03-08 06:25:48,071] [Preprocessor.java:241] [main] Processing chromosome scaffold1512 Processing chromosome scaffold1512 INFO [2014-03-08 06:25:48,172] [Preprocessor.java:241] [main] Processing chromosome scaffold1514 Processing chromosome scaffold1514 INFO [2014-03-08 06:25:48,196] [Preprocessor.java:241] [main] Processing chromosome scaffold1515 Processing chromosome scaffold1515 INFO [2014-03-08 06:25:48,227] [Preprocessor.java:241] [main] Processing chromosome scaffold1516 Processing chromosome scaffold1516 INFO [2014-03-08 06:25:48,248] [Preprocessor.java:241] [main] Processing chromosome scaffold1517 Processing chromosome scaffold1517 INFO [2014-03-08 06:25:48,262] [Preprocessor.java:241] [main] Processing chromosome scaffold1518 Processing chromosome scaffold1518 INFO [2014-03-08 06:25:48,385] [Preprocessor.java:241] [main] Processing chromosome scaffold1519 Processing chromosome scaffold1519 INFO [2014-03-08 06:25:48,413] [Preprocessor.java:241] [main] Processing chromosome scaffold152 Processing chromosome scaffold152 INFO [2014-03-08 06:25:48,451] [Preprocessor.java:241] [main] Processing chromosome scaffold1520 Processing chromosome scaffold1520 INFO [2014-03-08 06:25:48,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1521 Processing chromosome scaffold1521 INFO [2014-03-08 06:25:48,686] [Preprocessor.java:241] [main] Processing chromosome scaffold1522 Processing chromosome scaffold1522 INFO [2014-03-08 06:25:48,729] [Preprocessor.java:241] [main] Processing chromosome scaffold1524 Processing chromosome scaffold1524 INFO [2014-03-08 06:25:48,831] [Preprocessor.java:241] [main] Processing chromosome scaffold1525 Processing chromosome scaffold1525 INFO [2014-03-08 06:25:48,880] [Preprocessor.java:241] [main] Processing chromosome scaffold1526 Processing chromosome scaffold1526 INFO [2014-03-08 06:25:48,937] [Preprocessor.java:241] [main] Processing chromosome scaffold1527 Processing chromosome scaffold1527 INFO [2014-03-08 06:25:48,992] [Preprocessor.java:241] [main] Processing chromosome scaffold1528 Processing chromosome scaffold1528 INFO [2014-03-08 06:25:49,103] [Preprocessor.java:241] [main] Processing chromosome scaffold1529 Processing chromosome scaffold1529 INFO [2014-03-08 06:25:49,169] [Preprocessor.java:241] [main] Processing chromosome scaffold1530 Processing chromosome scaffold1530 INFO [2014-03-08 06:25:49,192] [Preprocessor.java:241] [main] Processing chromosome scaffold1531 Processing chromosome scaffold1531 INFO [2014-03-08 06:25:49,211] [Preprocessor.java:241] [main] Processing chromosome scaffold1532 Processing chromosome scaffold1532 INFO [2014-03-08 06:25:49,420] [Preprocessor.java:241] [main] Processing chromosome scaffold1533 Processing chromosome scaffold1533 INFO [2014-03-08 06:25:49,539] [Preprocessor.java:241] [main] Processing chromosome scaffold1534 Processing chromosome scaffold1534 INFO [2014-03-08 06:25:49,567] [Preprocessor.java:241] [main] Processing chromosome scaffold1535 Processing chromosome scaffold1535 INFO [2014-03-08 06:25:49,589] [Preprocessor.java:241] [main] Processing chromosome scaffold1536 Processing chromosome scaffold1536 INFO [2014-03-08 06:25:49,625] [Preprocessor.java:241] [main] Processing chromosome scaffold1537 Processing chromosome scaffold1537 INFO [2014-03-08 06:25:49,643] [Preprocessor.java:241] [main] Processing chromosome scaffold1538 Processing chromosome scaffold1538 INFO [2014-03-08 06:25:49,654] [Preprocessor.java:241] [main] Processing chromosome scaffold1539 Processing chromosome scaffold1539 INFO [2014-03-08 06:25:49,703] [Preprocessor.java:241] [main] Processing chromosome scaffold154 Processing chromosome scaffold154 INFO [2014-03-08 06:25:49,776] [Preprocessor.java:241] [main] Processing chromosome scaffold1540 Processing chromosome scaffold1540 INFO [2014-03-08 06:25:49,787] [Preprocessor.java:241] [main] Processing chromosome scaffold1541 Processing chromosome scaffold1541 INFO [2014-03-08 06:25:49,891] [Preprocessor.java:241] [main] Processing chromosome scaffold1542 Processing chromosome scaffold1542 INFO [2014-03-08 06:25:49,894] [Preprocessor.java:241] [main] Processing chromosome scaffold1543 Processing chromosome scaffold1543 INFO [2014-03-08 06:25:49,921] [Preprocessor.java:241] [main] Processing chromosome scaffold1544 Processing chromosome scaffold1544 INFO [2014-03-08 06:25:49,952] [Preprocessor.java:241] [main] Processing chromosome scaffold1546 Processing chromosome scaffold1546 INFO [2014-03-08 06:25:50,002] [Preprocessor.java:241] [main] Processing chromosome scaffold1547 Processing chromosome scaffold1547 INFO [2014-03-08 06:25:50,013] [Preprocessor.java:241] [main] Processing chromosome scaffold1548 Processing chromosome scaffold1548 INFO [2014-03-08 06:25:50,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1549 Processing chromosome scaffold1549 INFO [2014-03-08 06:25:50,053] [Preprocessor.java:241] [main] Processing chromosome scaffold155 Processing chromosome scaffold155 INFO [2014-03-08 06:25:50,090] [Preprocessor.java:241] [main] Processing chromosome scaffold1551 Processing chromosome scaffold1551 INFO [2014-03-08 06:25:50,130] [Preprocessor.java:241] [main] Processing chromosome scaffold1552 Processing chromosome scaffold1552 INFO [2014-03-08 06:25:50,135] [Preprocessor.java:241] [main] Processing chromosome scaffold1553 Processing chromosome scaffold1553 INFO [2014-03-08 06:25:50,172] [Preprocessor.java:241] [main] Processing chromosome scaffold1554 Processing chromosome scaffold1554 INFO [2014-03-08 06:25:50,221] [Preprocessor.java:241] [main] Processing chromosome scaffold1555 Processing chromosome scaffold1555 INFO [2014-03-08 06:25:50,228] [Preprocessor.java:241] [main] Processing chromosome scaffold1556 Processing chromosome scaffold1556 INFO [2014-03-08 06:25:50,271] [Preprocessor.java:241] [main] Processing chromosome scaffold1557 Processing chromosome scaffold1557 INFO [2014-03-08 06:25:50,277] [Preprocessor.java:241] [main] Processing chromosome scaffold1558 Processing chromosome scaffold1558 INFO [2014-03-08 06:25:50,304] [Preprocessor.java:241] [main] Processing chromosome scaffold1559 Processing chromosome scaffold1559 INFO [2014-03-08 06:25:50,347] [Preprocessor.java:241] [main] Processing chromosome scaffold156 Processing chromosome scaffold156 .INFO [2014-03-08 06:25:50,569] [Preprocessor.java:241] [main] Processing chromosome scaffold1560 Processing chromosome scaffold1560 INFO [2014-03-08 06:25:50,621] [Preprocessor.java:241] [main] Processing chromosome scaffold1561 Processing chromosome scaffold1561 INFO [2014-03-08 06:25:50,666] [Preprocessor.java:241] [main] Processing chromosome scaffold1562 Processing chromosome scaffold1562 INFO [2014-03-08 06:25:50,722] [Preprocessor.java:241] [main] Processing chromosome scaffold1563 Processing chromosome scaffold1563 INFO [2014-03-08 06:25:50,743] [Preprocessor.java:241] [main] Processing chromosome scaffold1564 Processing chromosome scaffold1564 INFO [2014-03-08 06:25:50,784] [Preprocessor.java:241] [main] Processing chromosome scaffold1565 Processing chromosome scaffold1565 INFO [2014-03-08 06:25:50,792] [Preprocessor.java:241] [main] Processing chromosome scaffold1566 Processing chromosome scaffold1566 INFO [2014-03-08 06:25:50,807] [Preprocessor.java:241] [main] Processing chromosome scaffold1567 Processing chromosome scaffold1567 INFO [2014-03-08 06:25:50,836] [Preprocessor.java:241] [main] Processing chromosome scaffold1569 Processing chromosome scaffold1569 INFO [2014-03-08 06:25:50,952] [Preprocessor.java:241] [main] Processing chromosome scaffold157 Processing chromosome scaffold157 INFO [2014-03-08 06:25:51,177] [Preprocessor.java:241] [main] Processing chromosome scaffold1570 Processing chromosome scaffold1570 INFO [2014-03-08 06:25:51,207] [Preprocessor.java:241] [main] Processing chromosome scaffold1571 Processing chromosome scaffold1571 INFO [2014-03-08 06:25:51,261] [Preprocessor.java:241] [main] Processing chromosome scaffold1572 Processing chromosome scaffold1572 INFO [2014-03-08 06:25:51,320] [Preprocessor.java:241] [main] Processing chromosome scaffold1573 Processing chromosome scaffold1573 INFO [2014-03-08 06:25:51,328] [Preprocessor.java:241] [main] Processing chromosome scaffold1574 Processing chromosome scaffold1574 INFO [2014-03-08 06:25:51,396] [Preprocessor.java:241] [main] Processing chromosome scaffold1575 Processing chromosome scaffold1575 INFO [2014-03-08 06:25:51,449] [Preprocessor.java:241] [main] Processing chromosome scaffold1576 Processing chromosome scaffold1576 INFO [2014-03-08 06:25:51,473] [Preprocessor.java:241] [main] Processing chromosome scaffold1577 Processing chromosome scaffold1577 INFO [2014-03-08 06:25:51,506] [Preprocessor.java:241] [main] Processing chromosome scaffold1578 Processing chromosome scaffold1578 INFO [2014-03-08 06:25:51,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1579 Processing chromosome scaffold1579 INFO [2014-03-08 06:25:51,694] [Preprocessor.java:241] [main] Processing chromosome scaffold1580 Processing chromosome scaffold1580 INFO [2014-03-08 06:25:51,729] [Preprocessor.java:241] [main] Processing chromosome scaffold1581 Processing chromosome scaffold1581 INFO [2014-03-08 06:25:51,773] [Preprocessor.java:241] [main] Processing chromosome scaffold1582 Processing chromosome scaffold1582 INFO [2014-03-08 06:25:51,798] [Preprocessor.java:241] [main] Processing chromosome scaffold1583 Processing chromosome scaffold1583 INFO [2014-03-08 06:25:52,007] [Preprocessor.java:241] [main] Processing chromosome scaffold1584 Processing chromosome scaffold1584 INFO [2014-03-08 06:25:52,102] [Preprocessor.java:241] [main] Processing chromosome scaffold1585 Processing chromosome scaffold1585 INFO [2014-03-08 06:25:52,163] [Preprocessor.java:241] [main] Processing chromosome scaffold1586 Processing chromosome scaffold1586 INFO [2014-03-08 06:25:52,185] [Preprocessor.java:241] [main] Processing chromosome scaffold1587 Processing chromosome scaffold1587 INFO [2014-03-08 06:25:52,190] [Preprocessor.java:241] [main] Processing chromosome scaffold1588 Processing chromosome scaffold1588 INFO [2014-03-08 06:25:52,238] [Preprocessor.java:241] [main] Processing chromosome scaffold1589 Processing chromosome scaffold1589 INFO [2014-03-08 06:25:52,392] [Preprocessor.java:241] [main] Processing chromosome scaffold1590 Processing chromosome scaffold1590 INFO [2014-03-08 06:25:52,413] [Preprocessor.java:241] [main] Processing chromosome scaffold1591 Processing chromosome scaffold1591 INFO [2014-03-08 06:25:52,428] [Preprocessor.java:241] [main] Processing chromosome scaffold1592 Processing chromosome scaffold1592 INFO [2014-03-08 06:25:52,495] [Preprocessor.java:241] [main] Processing chromosome scaffold1593 Processing chromosome scaffold1593 INFO [2014-03-08 06:25:52,527] [Preprocessor.java:241] [main] Processing chromosome scaffold1595 Processing chromosome scaffold1595 INFO [2014-03-08 06:25:52,539] [Preprocessor.java:241] [main] Processing chromosome scaffold1596 Processing chromosome scaffold1596 INFO [2014-03-08 06:25:52,542] [Preprocessor.java:241] [main] Processing chromosome scaffold1597 Processing chromosome scaffold1597 INFO [2014-03-08 06:25:52,608] [Preprocessor.java:241] [main] Processing chromosome scaffold1598 Processing chromosome scaffold1598 INFO [2014-03-08 06:25:52,648] [Preprocessor.java:241] [main] Processing chromosome scaffold1599 Processing chromosome scaffold1599 INFO [2014-03-08 06:25:52,837] [Preprocessor.java:241] [main] Processing chromosome scaffold160 Processing chromosome scaffold160 INFO [2014-03-08 06:25:52,933] [Preprocessor.java:241] [main] Processing chromosome scaffold1600 Processing chromosome scaffold1600 INFO [2014-03-08 06:25:53,021] [Preprocessor.java:241] [main] Processing chromosome scaffold1601 Processing chromosome scaffold1601 INFO [2014-03-08 06:25:53,123] [Preprocessor.java:241] [main] Processing chromosome scaffold1603 Processing chromosome scaffold1603 INFO [2014-03-08 06:25:53,199] [Preprocessor.java:241] [main] Processing chromosome scaffold1604 Processing chromosome scaffold1604 INFO [2014-03-08 06:25:53,202] [Preprocessor.java:241] [main] Processing chromosome scaffold1605 Processing chromosome scaffold1605 INFO [2014-03-08 06:25:53,485] [Preprocessor.java:241] [main] Processing chromosome scaffold1606 Processing chromosome scaffold1606 INFO [2014-03-08 06:25:53,511] [Preprocessor.java:241] [main] Processing chromosome scaffold1607 Processing chromosome scaffold1607 INFO [2014-03-08 06:25:53,540] [Preprocessor.java:241] [main] Processing chromosome scaffold1608 Processing chromosome scaffold1608 10.0% INFO [2014-03-08 06:25:53,613] [Preprocessor.java:241] [main] Processing chromosome scaffold1609 Processing chromosome scaffold1609 INFO [2014-03-08 06:25:53,644] [Preprocessor.java:241] [main] Processing chromosome scaffold161 Processing chromosome scaffold161 INFO [2014-03-08 06:25:53,776] [Preprocessor.java:241] [main] Processing chromosome scaffold1610 Processing chromosome scaffold1610 INFO [2014-03-08 06:25:53,895] [Preprocessor.java:241] [main] Processing chromosome scaffold1611 Processing chromosome scaffold1611 INFO [2014-03-08 06:25:53,933] [Preprocessor.java:241] [main] Processing chromosome scaffold1612 Processing chromosome scaffold1612 INFO [2014-03-08 06:25:53,945] [Preprocessor.java:241] [main] Processing chromosome scaffold1613 Processing chromosome scaffold1613 INFO [2014-03-08 06:25:53,988] [Preprocessor.java:241] [main] Processing chromosome scaffold1614 Processing chromosome scaffold1614 INFO [2014-03-08 06:25:54,003] [Preprocessor.java:241] [main] Processing chromosome scaffold1615 Processing chromosome scaffold1615 INFO [2014-03-08 06:25:54,010] [Preprocessor.java:241] [main] Processing chromosome scaffold1616 Processing chromosome scaffold1616 INFO [2014-03-08 06:25:54,038] [Preprocessor.java:241] [main] Processing chromosome scaffold1617 Processing chromosome scaffold1617 INFO [2014-03-08 06:25:54,062] [Preprocessor.java:241] [main] Processing chromosome scaffold1618 Processing chromosome scaffold1618 INFO [2014-03-08 06:25:54,071] [Preprocessor.java:241] [main] Processing chromosome scaffold1619 Processing chromosome scaffold1619 INFO [2014-03-08 06:25:54,100] [Preprocessor.java:241] [main] Processing chromosome scaffold162 Processing chromosome scaffold162 INFO [2014-03-08 06:25:54,207] [Preprocessor.java:241] [main] Processing chromosome scaffold1620 Processing chromosome scaffold1620 INFO [2014-03-08 06:25:54,233] [Preprocessor.java:241] [main] Processing chromosome scaffold1621 Processing chromosome scaffold1621 INFO [2014-03-08 06:25:54,239] [Preprocessor.java:241] [main] Processing chromosome scaffold1622 Processing chromosome scaffold1622 INFO [2014-03-08 06:25:54,243] [Preprocessor.java:241] [main] Processing chromosome scaffold1623 Processing chromosome scaffold1623 INFO [2014-03-08 06:25:54,273] [Preprocessor.java:241] [main] Processing chromosome scaffold1624 Processing chromosome scaffold1624 INFO [2014-03-08 06:25:54,283] [Preprocessor.java:241] [main] Processing chromosome scaffold1625 Processing chromosome scaffold1625 INFO [2014-03-08 06:25:54,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1626 Processing chromosome scaffold1626 INFO [2014-03-08 06:25:54,330] [Preprocessor.java:241] [main] Processing chromosome scaffold1627 Processing chromosome scaffold1627 INFO [2014-03-08 06:25:54,382] [Preprocessor.java:241] [main] Processing chromosome scaffold1628 Processing chromosome scaffold1628 INFO [2014-03-08 06:25:54,387] [Preprocessor.java:241] [main] Processing chromosome scaffold1629 Processing chromosome scaffold1629 INFO [2014-03-08 06:25:54,399] [Preprocessor.java:241] [main] Processing chromosome scaffold163 Processing chromosome scaffold163 INFO [2014-03-08 06:25:54,547] [Preprocessor.java:241] [main] Processing chromosome scaffold1630 Processing chromosome scaffold1630 INFO [2014-03-08 06:25:54,590] [Preprocessor.java:241] [main] Processing chromosome scaffold1631 Processing chromosome scaffold1631 INFO [2014-03-08 06:25:54,621] [Preprocessor.java:241] [main] Processing chromosome scaffold1632 Processing chromosome scaffold1632 INFO [2014-03-08 06:25:54,659] [Preprocessor.java:241] [main] Processing chromosome scaffold1633 Processing chromosome scaffold1633 INFO [2014-03-08 06:25:54,681] [Preprocessor.java:241] [main] Processing chromosome scaffold1634 Processing chromosome scaffold1634 INFO [2014-03-08 06:25:54,728] [Preprocessor.java:241] [main] Processing chromosome scaffold1635 Processing chromosome scaffold1635 INFO [2014-03-08 06:25:54,743] [Preprocessor.java:241] [main] Processing chromosome scaffold1636 Processing chromosome scaffold1636 INFO [2014-03-08 06:25:54,756] [Preprocessor.java:241] [main] Processing chromosome scaffold1637 Processing chromosome scaffold1637 INFO [2014-03-08 06:25:54,803] [Preprocessor.java:241] [main] Processing chromosome scaffold1638 Processing chromosome scaffold1638 INFO [2014-03-08 06:25:54,847] [Preprocessor.java:241] [main] Processing chromosome scaffold1639 Processing chromosome scaffold1639 INFO [2014-03-08 06:25:54,869] [Preprocessor.java:241] [main] Processing chromosome scaffold164 Processing chromosome scaffold164 INFO [2014-03-08 06:25:55,038] [Preprocessor.java:241] [main] Processing chromosome scaffold1640 Processing chromosome scaffold1640 INFO [2014-03-08 06:25:55,046] [Preprocessor.java:241] [main] Processing chromosome scaffold1641 Processing chromosome scaffold1641 INFO [2014-03-08 06:25:55,092] [Preprocessor.java:241] [main] Processing chromosome scaffold1642 Processing chromosome scaffold1642 INFO [2014-03-08 06:25:55,114] [Preprocessor.java:241] [main] Processing chromosome scaffold1643 Processing chromosome scaffold1643 INFO [2014-03-08 06:25:55,150] [Preprocessor.java:241] [main] Processing chromosome scaffold1644 Processing chromosome scaffold1644 INFO [2014-03-08 06:25:55,186] [Preprocessor.java:241] [main] Processing chromosome scaffold1645 Processing chromosome scaffold1645 INFO [2014-03-08 06:25:55,262] [Preprocessor.java:241] [main] Processing chromosome scaffold1646 Processing chromosome scaffold1646 INFO [2014-03-08 06:25:55,291] [Preprocessor.java:241] [main] Processing chromosome scaffold1647 Processing chromosome scaffold1647 INFO [2014-03-08 06:25:55,309] [Preprocessor.java:241] [main] Processing chromosome scaffold1648 Processing chromosome scaffold1648 INFO [2014-03-08 06:25:55,316] [Preprocessor.java:241] [main] Processing chromosome scaffold165 Processing chromosome scaffold165 INFO [2014-03-08 06:25:55,393] [Preprocessor.java:241] [main] Processing chromosome scaffold1650 Processing chromosome scaffold1650 INFO [2014-03-08 06:25:55,515] [Preprocessor.java:241] [main] Processing chromosome scaffold1651 Processing chromosome scaffold1651 INFO [2014-03-08 06:25:55,555] [Preprocessor.java:241] [main] Processing chromosome scaffold1652 Processing chromosome scaffold1652 INFO [2014-03-08 06:25:55,673] [Preprocessor.java:241] [main] Processing chromosome scaffold1653 Processing chromosome scaffold1653 INFO [2014-03-08 06:25:55,700] [Preprocessor.java:241] [main] Processing chromosome scaffold1654 Processing chromosome scaffold1654 INFO [2014-03-08 06:25:55,730] [Preprocessor.java:241] [main] Processing chromosome scaffold1655 Processing chromosome scaffold1655 INFO [2014-03-08 06:25:55,739] [Preprocessor.java:241] [main] Processing chromosome scaffold1656 Processing chromosome scaffold1656 INFO [2014-03-08 06:25:55,752] [Preprocessor.java:241] [main] Processing chromosome scaffold1657 Processing chromosome scaffold1657 INFO [2014-03-08 06:25:55,767] [Preprocessor.java:241] [main] Processing chromosome scaffold1658 Processing chromosome scaffold1658 INFO [2014-03-08 06:25:55,791] [Preprocessor.java:241] [main] Processing chromosome scaffold1659 Processing chromosome scaffold1659 INFO [2014-03-08 06:25:55,800] [Preprocessor.java:241] [main] Processing chromosome scaffold1660 Processing chromosome scaffold1660 INFO [2014-03-08 06:25:55,822] [Preprocessor.java:241] [main] Processing chromosome scaffold1661 Processing chromosome scaffold1661 INFO [2014-03-08 06:25:55,835] [Preprocessor.java:241] [main] Processing chromosome scaffold1662 Processing chromosome scaffold1662 INFO [2014-03-08 06:25:55,901] [Preprocessor.java:241] [main] Processing chromosome scaffold1663 Processing chromosome scaffold1663 INFO [2014-03-08 06:25:55,935] [Preprocessor.java:241] [main] Processing chromosome scaffold1664 Processing chromosome scaffold1664 INFO [2014-03-08 06:25:55,957] [Preprocessor.java:241] [main] Processing chromosome scaffold1665 Processing chromosome scaffold1665 INFO [2014-03-08 06:25:56,055] [Preprocessor.java:241] [main] Processing chromosome scaffold1666 Processing chromosome scaffold1666 INFO [2014-03-08 06:25:56,060] [Preprocessor.java:241] [main] Processing chromosome scaffold1667 Processing chromosome scaffold1667 INFO [2014-03-08 06:25:56,153] [Preprocessor.java:241] [main] Processing chromosome scaffold1668 Processing chromosome scaffold1668 INFO [2014-03-08 06:25:56,158] [Preprocessor.java:241] [main] Processing chromosome scaffold1669 Processing chromosome scaffold1669 INFO [2014-03-08 06:25:56,176] [Preprocessor.java:241] [main] Processing chromosome scaffold167 Processing chromosome scaffold167 INFO [2014-03-08 06:25:56,184] [Preprocessor.java:241] [main] Processing chromosome scaffold1670 Processing chromosome scaffold1670 INFO [2014-03-08 06:25:56,294] [Preprocessor.java:241] [main] Processing chromosome scaffold1671 Processing chromosome scaffold1671 INFO [2014-03-08 06:25:56,412] [Preprocessor.java:241] [main] Processing chromosome scaffold1672 Processing chromosome scaffold1672 INFO [2014-03-08 06:25:56,447] [Preprocessor.java:241] [main] Processing chromosome scaffold1673 Processing chromosome scaffold1673 INFO [2014-03-08 06:25:56,534] [Preprocessor.java:241] [main] Processing chromosome scaffold1674 Processing chromosome scaffold1674 INFO [2014-03-08 06:25:56,561] [Preprocessor.java:241] [main] Processing chromosome scaffold1675 Processing chromosome scaffold1675 INFO [2014-03-08 06:25:56,573] [Preprocessor.java:241] [main] Processing chromosome scaffold1676 Processing chromosome scaffold1676 INFO [2014-03-08 06:25:56,590] [Preprocessor.java:241] [main] Processing chromosome scaffold1678 Processing chromosome scaffold1678 INFO [2014-03-08 06:25:56,664] [Preprocessor.java:241] [main] Processing chromosome scaffold1679 Processing chromosome scaffold1679 INFO [2014-03-08 06:25:56,678] [Preprocessor.java:241] [main] Processing chromosome scaffold168 Processing chromosome scaffold168 INFO [2014-03-08 06:25:56,839] [Preprocessor.java:241] [main] Processing chromosome scaffold1680 Processing chromosome scaffold1680 INFO [2014-03-08 06:25:56,893] [Preprocessor.java:241] [main] Processing chromosome scaffold1681 Processing chromosome scaffold1681 INFO [2014-03-08 06:25:56,898] [Preprocessor.java:241] [main] Processing chromosome scaffold1682 Processing chromosome scaffold1682 INFO [2014-03-08 06:25:56,936] [Preprocessor.java:241] [main] Processing chromosome scaffold1683 Processing chromosome scaffold1683 INFO [2014-03-08 06:25:56,951] [Preprocessor.java:241] [main] Processing chromosome scaffold1684 Processing chromosome scaffold1684 INFO [2014-03-08 06:25:56,987] [Preprocessor.java:241] [main] Processing chromosome scaffold1685 Processing chromosome scaffold1685 INFO [2014-03-08 06:25:57,010] [Preprocessor.java:241] [main] Processing chromosome scaffold1686 Processing chromosome scaffold1686 INFO [2014-03-08 06:25:57,025] [Preprocessor.java:241] [main] Processing chromosome scaffold1687 Processing chromosome scaffold1687 INFO [2014-03-08 06:25:57,084] [Preprocessor.java:241] [main] Processing chromosome scaffold1688 Processing chromosome scaffold1688 INFO [2014-03-08 06:25:57,157] [Preprocessor.java:241] [main] Processing chromosome scaffold1689 Processing chromosome scaffold1689 INFO [2014-03-08 06:25:57,162] [Preprocessor.java:241] [main] Processing chromosome scaffold169 Processing chromosome scaffold169 INFO [2014-03-08 06:25:57,270] [Preprocessor.java:241] [main] Processing chromosome scaffold1690 Processing chromosome scaffold1690 INFO [2014-03-08 06:25:57,311] [Preprocessor.java:241] [main] Processing chromosome scaffold1691 Processing chromosome scaffold1691 INFO [2014-03-08 06:25:57,317] [Preprocessor.java:241] [main] Processing chromosome scaffold1692 Processing chromosome scaffold1692 INFO [2014-03-08 06:25:57,345] [Preprocessor.java:241] [main] Processing chromosome scaffold1693 Processing chromosome scaffold1693 INFO [2014-03-08 06:25:57,366] [Preprocessor.java:241] [main] Processing chromosome scaffold1694 Processing chromosome scaffold1694 INFO [2014-03-08 06:25:57,376] [Preprocessor.java:241] [main] Processing chromosome scaffold1695 Processing chromosome scaffold1695 INFO [2014-03-08 06:25:57,398] [Preprocessor.java:241] [main] Processing chromosome scaffold1696 Processing chromosome scaffold1696 INFO [2014-03-08 06:25:57,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1697 Processing chromosome scaffold1697 INFO [2014-03-08 06:25:57,470] [Preprocessor.java:241] [main] Processing chromosome scaffold1698 Processing chromosome scaffold1698 INFO [2014-03-08 06:25:57,530] [Preprocessor.java:241] [main] Processing chromosome scaffold1699 Processing chromosome scaffold1699 INFO [2014-03-08 06:25:57,583] [Preprocessor.java:241] [main] Processing chromosome scaffold17 Processing chromosome scaffold17 INFO [2014-03-08 06:25:57,627] [Preprocessor.java:241] [main] Processing chromosome scaffold170 Processing chromosome scaffold170 INFO [2014-03-08 06:25:57,711] [Preprocessor.java:241] [main] Processing chromosome scaffold1700 Processing chromosome scaffold1700 INFO [2014-03-08 06:25:57,766] [Preprocessor.java:241] [main] Processing chromosome scaffold1701 Processing chromosome scaffold1701 INFO [2014-03-08 06:25:57,776] [Preprocessor.java:241] [main] Processing chromosome scaffold1702 Processing chromosome scaffold1702 INFO [2014-03-08 06:25:57,797] [Preprocessor.java:241] [main] Processing chromosome scaffold1703 Processing chromosome scaffold1703 .INFO [2014-03-08 06:25:57,923] [Preprocessor.java:241] [main] Processing chromosome scaffold1704 Processing chromosome scaffold1704 INFO [2014-03-08 06:25:58,013] [Preprocessor.java:241] [main] Processing chromosome scaffold1705 Processing chromosome scaffold1705 INFO [2014-03-08 06:25:58,050] [Preprocessor.java:241] [main] Processing chromosome scaffold1706 Processing chromosome scaffold1706 INFO [2014-03-08 06:25:58,068] [Preprocessor.java:241] [main] Processing chromosome scaffold1707 Processing chromosome scaffold1707 INFO [2014-03-08 06:25:58,091] [Preprocessor.java:241] [main] Processing chromosome scaffold1708 Processing chromosome scaffold1708 INFO [2014-03-08 06:25:58,126] [Preprocessor.java:241] [main] Processing chromosome scaffold1709 Processing chromosome scaffold1709 INFO [2014-03-08 06:25:58,171] [Preprocessor.java:241] [main] Processing chromosome scaffold1710 Processing chromosome scaffold1710 INFO [2014-03-08 06:25:58,315] [Preprocessor.java:241] [main] Processing chromosome scaffold1711 Processing chromosome scaffold1711 INFO [2014-03-08 06:25:58,416] [Preprocessor.java:241] [main] Processing chromosome scaffold1712 Processing chromosome scaffold1712 INFO [2014-03-08 06:25:58,422] [Preprocessor.java:241] [main] Processing chromosome scaffold1713 Processing chromosome scaffold1713 INFO [2014-03-08 06:25:58,469] [Preprocessor.java:241] [main] Processing chromosome scaffold1714 Processing chromosome scaffold1714 INFO [2014-03-08 06:25:58,518] [Preprocessor.java:241] [main] Processing chromosome scaffold1715 Processing chromosome scaffold1715 INFO [2014-03-08 06:25:58,643] [Preprocessor.java:241] [main] Processing chromosome scaffold1716 Processing chromosome scaffold1716 INFO [2014-03-08 06:25:58,658] [Preprocessor.java:241] [main] Processing chromosome scaffold1717 Processing chromosome scaffold1717 INFO [2014-03-08 06:25:58,716] [Preprocessor.java:241] [main] Processing chromosome scaffold1718 Processing chromosome scaffold1718 INFO [2014-03-08 06:25:58,726] [Preprocessor.java:241] [main] Processing chromosome scaffold1719 Processing chromosome scaffold1719 INFO [2014-03-08 06:25:58,794] [Preprocessor.java:241] [main] Processing chromosome scaffold172 Processing chromosome scaffold172 INFO [2014-03-08 06:25:58,903] [Preprocessor.java:241] [main] Processing chromosome scaffold1720 Processing chromosome scaffold1720 INFO [2014-03-08 06:25:58,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1721 Processing chromosome scaffold1721 INFO [2014-03-08 06:25:59,029] [Preprocessor.java:241] [main] Processing chromosome scaffold1722 Processing chromosome scaffold1722 INFO [2014-03-08 06:25:59,133] [Preprocessor.java:241] [main] Processing chromosome scaffold1723 Processing chromosome scaffold1723 INFO [2014-03-08 06:25:59,220] [Preprocessor.java:241] [main] Processing chromosome scaffold1724 Processing chromosome scaffold1724 INFO [2014-03-08 06:25:59,234] [Preprocessor.java:241] [main] Processing chromosome scaffold1725 Processing chromosome scaffold1725 INFO [2014-03-08 06:25:59,255] [Preprocessor.java:241] [main] Processing chromosome scaffold1726 Processing chromosome scaffold1726 INFO [2014-03-08 06:25:59,373] [Preprocessor.java:241] [main] Processing chromosome scaffold1727 Processing chromosome scaffold1727 INFO [2014-03-08 06:25:59,406] [Preprocessor.java:241] [main] Processing chromosome scaffold1728 Processing chromosome scaffold1728 INFO [2014-03-08 06:25:59,421] [Preprocessor.java:241] [main] Processing chromosome scaffold1729 Processing chromosome scaffold1729 INFO [2014-03-08 06:25:59,476] [Preprocessor.java:241] [main] Processing chromosome scaffold173 Processing chromosome scaffold173 INFO [2014-03-08 06:25:59,520] [Preprocessor.java:241] [main] Processing chromosome scaffold1730 Processing chromosome scaffold1730 INFO [2014-03-08 06:25:59,578] [Preprocessor.java:241] [main] Processing chromosome scaffold1731 Processing chromosome scaffold1731 INFO [2014-03-08 06:25:59,616] [Preprocessor.java:241] [main] Processing chromosome scaffold1732 Processing chromosome scaffold1732 INFO [2014-03-08 06:25:59,626] [Preprocessor.java:241] [main] Processing chromosome scaffold1733 Processing chromosome scaffold1733 INFO [2014-03-08 06:25:59,671] [Preprocessor.java:241] [main] Processing chromosome scaffold1734 Processing chromosome scaffold1734 INFO [2014-03-08 06:25:59,698] [Preprocessor.java:241] [main] Processing chromosome scaffold1735 Processing chromosome scaffold1735 INFO [2014-03-08 06:25:59,770] [Preprocessor.java:241] [main] Processing chromosome scaffold1736 Processing chromosome scaffold1736 INFO [2014-03-08 06:25:59,918] [Preprocessor.java:241] [main] Processing chromosome scaffold1737 Processing chromosome scaffold1737 INFO [2014-03-08 06:26:00,003] [Preprocessor.java:241] [main] Processing chromosome scaffold1738 Processing chromosome scaffold1738 INFO [2014-03-08 06:26:00,075] [Preprocessor.java:241] [main] Processing chromosome scaffold1739 Processing chromosome scaffold1739 INFO [2014-03-08 06:26:00,135] [Preprocessor.java:241] [main] Processing chromosome scaffold174 Processing chromosome scaffold174 INFO [2014-03-08 06:26:00,151] [Preprocessor.java:241] [main] Processing chromosome scaffold1740 Processing chromosome scaffold1740 INFO [2014-03-08 06:26:00,210] [Preprocessor.java:241] [main] Processing chromosome scaffold1741 Processing chromosome scaffold1741 INFO [2014-03-08 06:26:00,333] [Preprocessor.java:241] [main] Processing chromosome scaffold1742 Processing chromosome scaffold1742 INFO [2014-03-08 06:26:00,437] [Preprocessor.java:241] [main] Processing chromosome scaffold1743 Processing chromosome scaffold1743 INFO [2014-03-08 06:26:00,474] [Preprocessor.java:241] [main] Processing chromosome scaffold1745 Processing chromosome scaffold1745 INFO [2014-03-08 06:26:00,494] [Preprocessor.java:241] [main] Processing chromosome scaffold1746 Processing chromosome scaffold1746 INFO [2014-03-08 06:26:00,559] [Preprocessor.java:241] [main] Processing chromosome scaffold1747 Processing chromosome scaffold1747 INFO [2014-03-08 06:26:00,593] [Preprocessor.java:241] [main] Processing chromosome scaffold1748 Processing chromosome scaffold1748 INFO [2014-03-08 06:26:00,626] [Preprocessor.java:241] [main] Processing chromosome scaffold1749 Processing chromosome scaffold1749 INFO [2014-03-08 06:26:00,672] [Preprocessor.java:241] [main] Processing chromosome scaffold175 Processing chromosome scaffold175 INFO [2014-03-08 06:26:00,819] [Preprocessor.java:241] [main] Processing chromosome scaffold1750 Processing chromosome scaffold1750 INFO [2014-03-08 06:26:01,011] [Preprocessor.java:241] [main] Processing chromosome scaffold1751 Processing chromosome scaffold1751 INFO [2014-03-08 06:26:01,078] [Preprocessor.java:241] [main] Processing chromosome scaffold1752 Processing chromosome scaffold1752 INFO [2014-03-08 06:26:01,115] [Preprocessor.java:241] [main] Processing chromosome scaffold1753 Processing chromosome scaffold1753 INFO [2014-03-08 06:26:01,158] [Preprocessor.java:241] [main] Processing chromosome scaffold1754 Processing chromosome scaffold1754 INFO [2014-03-08 06:26:01,183] [Preprocessor.java:241] [main] Processing chromosome scaffold1755 Processing chromosome scaffold1755 INFO [2014-03-08 06:26:01,191] [Preprocessor.java:241] [main] Processing chromosome scaffold1756 Processing chromosome scaffold1756 INFO [2014-03-08 06:26:01,209] [Preprocessor.java:241] [main] Processing chromosome scaffold1757 Processing chromosome scaffold1757 INFO [2014-03-08 06:26:01,254] [Preprocessor.java:241] [main] Processing chromosome scaffold1758 Processing chromosome scaffold1758 INFO [2014-03-08 06:26:01,304] [Preprocessor.java:241] [main] Processing chromosome scaffold1759 Processing chromosome scaffold1759 INFO [2014-03-08 06:26:01,355] [Preprocessor.java:241] [main] Processing chromosome scaffold17598 Processing chromosome scaffold17598 INFO [2014-03-08 06:26:01,410] [Preprocessor.java:241] [main] Processing chromosome scaffold1760 Processing chromosome scaffold1760 INFO [2014-03-08 06:26:01,437] [Preprocessor.java:241] [main] Processing chromosome scaffold17600 Processing chromosome scaffold17600 INFO [2014-03-08 06:26:01,453] [Preprocessor.java:241] [main] Processing chromosome scaffold1761 Processing chromosome scaffold1761 INFO [2014-03-08 06:26:01,482] [Preprocessor.java:241] [main] Processing chromosome scaffold1762 Processing chromosome scaffold1762 INFO [2014-03-08 06:26:01,496] [Preprocessor.java:241] [main] Processing chromosome scaffold1763 Processing chromosome scaffold1763 .INFO [2014-03-08 06:26:01,703] [Preprocessor.java:241] [main] Processing chromosome scaffold1764 Processing chromosome scaffold1764 INFO [2014-03-08 06:26:01,713] [Preprocessor.java:241] [main] Processing chromosome scaffold1765 Processing chromosome scaffold1765 INFO [2014-03-08 06:26:01,725] [Preprocessor.java:241] [main] Processing chromosome scaffold1766 Processing chromosome scaffold1766 INFO [2014-03-08 06:26:01,788] [Preprocessor.java:241] [main] Processing chromosome scaffold1767 Processing chromosome scaffold1767 INFO [2014-03-08 06:26:01,868] [Preprocessor.java:241] [main] Processing chromosome scaffold1768 Processing chromosome scaffold1768 INFO [2014-03-08 06:26:01,897] [Preprocessor.java:241] [main] Processing chromosome scaffold1769 Processing chromosome scaffold1769 INFO [2014-03-08 06:26:01,953] [Preprocessor.java:241] [main] Processing chromosome scaffold177 Processing chromosome scaffold177 INFO [2014-03-08 06:26:01,999] [Preprocessor.java:241] [main] Processing chromosome scaffold1770 Processing chromosome scaffold1770 INFO [2014-03-08 06:26:02,053] [Preprocessor.java:241] [main] Processing chromosome scaffold1771 Processing chromosome scaffold1771 INFO [2014-03-08 06:26:02,099] [Preprocessor.java:241] [main] Processing chromosome scaffold1772 Processing chromosome scaffold1772 INFO [2014-03-08 06:26:02,128] [Preprocessor.java:241] [main] Processing chromosome scaffold1773 Processing chromosome scaffold1773 INFO [2014-03-08 06:26:02,152] [Preprocessor.java:241] [main] Processing chromosome scaffold1774 Processing chromosome scaffold1774 INFO [2014-03-08 06:26:02,217] [Preprocessor.java:241] [main] Processing chromosome scaffold1775 Processing chromosome scaffold1775 INFO [2014-03-08 06:26:02,230] [Preprocessor.java:241] [main] Processing chromosome scaffold1776 Processing chromosome scaffold1776 INFO [2014-03-08 06:26:02,239] [Preprocessor.java:241] [main] Processing chromosome scaffold1777 Processing chromosome scaffold1777 INFO [2014-03-08 06:26:02,255] [Preprocessor.java:241] [main] Processing chromosome scaffold1778 Processing chromosome scaffold1778 INFO [2014-03-08 06:26:02,266] [Preprocessor.java:241] [main] Processing chromosome scaffold1779 Processing chromosome scaffold1779 INFO [2014-03-08 06:26:02,289] [Preprocessor.java:241] [main] Processing chromosome scaffold178 Processing chromosome scaffold178 INFO [2014-03-08 06:26:02,306] [Preprocessor.java:241] [main] Processing chromosome scaffold1780 Processing chromosome scaffold1780 INFO [2014-03-08 06:26:02,404] [Preprocessor.java:241] [main] Processing chromosome scaffold1781 Processing chromosome scaffold1781 INFO [2014-03-08 06:26:02,445] [Preprocessor.java:241] [main] Processing chromosome scaffold1782 Processing chromosome scaffold1782 INFO [2014-03-08 06:26:02,494] [Preprocessor.java:241] [main] Processing chromosome scaffold1783 Processing chromosome scaffold1783 INFO [2014-03-08 06:26:02,531] [Preprocessor.java:241] [main] Processing chromosome scaffold1784 Processing chromosome scaffold1784 INFO [2014-03-08 06:26:02,540] [Preprocessor.java:241] [main] Processing chromosome scaffold1785 Processing chromosome scaffold1785 INFO [2014-03-08 06:26:02,777] [Preprocessor.java:241] [main] Processing chromosome scaffold1786 Processing chromosome scaffold1786 INFO [2014-03-08 06:26:02,820] [Preprocessor.java:241] [main] Processing chromosome scaffold1787 Processing chromosome scaffold1787 INFO [2014-03-08 06:26:02,839] [Preprocessor.java:241] [main] Processing chromosome scaffold1788 Processing chromosome scaffold1788 INFO [2014-03-08 06:26:02,997] [Preprocessor.java:241] [main] Processing chromosome scaffold1789 Processing chromosome scaffold1789 INFO [2014-03-08 06:26:03,024] [Preprocessor.java:241] [main] Processing chromosome scaffold179 Processing chromosome scaffold179 INFO [2014-03-08 06:26:03,058] [Preprocessor.java:241] [main] Processing chromosome scaffold1790 Processing chromosome scaffold1790 INFO [2014-03-08 06:26:03,098] [Preprocessor.java:241] [main] Processing chromosome scaffold1791 Processing chromosome scaffold1791 INFO [2014-03-08 06:26:03,162] [Preprocessor.java:241] [main] Processing chromosome scaffold17912 Processing chromosome scaffold17912 INFO [2014-03-08 06:26:03,206] [Preprocessor.java:241] [main] Processing chromosome scaffold1792 Processing chromosome scaffold1792 INFO [2014-03-08 06:26:03,278] [Preprocessor.java:241] [main] Processing chromosome scaffold1793 Processing chromosome scaffold1793 INFO [2014-03-08 06:26:03,289] [Preprocessor.java:241] [main] Processing chromosome scaffold1794 Processing chromosome scaffold1794 INFO [2014-03-08 06:26:03,446] [Preprocessor.java:241] [main] Processing chromosome scaffold1795 Processing chromosome scaffold1795 INFO [2014-03-08 06:26:03,491] [Preprocessor.java:241] [main] Processing chromosome scaffold1796 Processing chromosome scaffold1796 INFO [2014-03-08 06:26:03,515] [Preprocessor.java:241] [main] Processing chromosome scaffold1797 Processing chromosome scaffold1797 INFO [2014-03-08 06:26:03,546] [Preprocessor.java:241] [main] Processing chromosome scaffold1798 Processing chromosome scaffold1798 INFO [2014-03-08 06:26:03,566] [Preprocessor.java:241] [main] Processing chromosome scaffold1799 Processing chromosome scaffold1799 INFO [2014-03-08 06:26:03,599] [Preprocessor.java:241] [main] Processing chromosome scaffold18 Processing chromosome scaffold18 INFO [2014-03-08 06:26:03,609] [Preprocessor.java:241] [main] Processing chromosome scaffold180 Processing chromosome scaffold180 INFO [2014-03-08 06:26:03,634] [Preprocessor.java:241] [main] Processing chromosome scaffold1800 Processing chromosome scaffold1800 INFO [2014-03-08 06:26:03,769] [Preprocessor.java:241] [main] Processing chromosome scaffold1801 Processing chromosome scaffold1801 INFO [2014-03-08 06:26:03,803] [Preprocessor.java:241] [main] Processing chromosome scaffold1802 Processing chromosome scaffold1802 INFO [2014-03-08 06:26:03,839] [Preprocessor.java:241] [main] Processing chromosome scaffold1803 Processing chromosome scaffold1803 INFO [2014-03-08 06:26:04,014] [Preprocessor.java:241] [main] Processing chromosome scaffold1804 Processing chromosome scaffold1804 INFO [2014-03-08 06:26:04,124] [Preprocessor.java:241] [main] Processing chromosome scaffold1805 Processing chromosome scaffold1805 INFO [2014-03-08 06:26:04,174] [Preprocessor.java:241] [main] Processing chromosome scaffold18052 Processing chromosome scaffold18052 INFO [2014-03-08 06:26:04,184] [Preprocessor.java:241] [main] Processing chromosome scaffold1806 Processing chromosome scaffold1806 INFO [2014-03-08 06:26:04,236] [Preprocessor.java:241] [main] Processing chromosome scaffold1807 Processing chromosome scaffold1807 INFO [2014-03-08 06:26:04,254] [Preprocessor.java:241] [main] Processing chromosome scaffold1808 Processing chromosome scaffold1808 INFO [2014-03-08 06:26:04,312] [Preprocessor.java:241] [main] Processing chromosome scaffold1809 Processing chromosome scaffold1809 INFO [2014-03-08 06:26:04,322] [Preprocessor.java:241] [main] Processing chromosome scaffold181 Processing chromosome scaffold181 INFO [2014-03-08 06:26:04,329] [Preprocessor.java:241] [main] Processing chromosome scaffold1810 Processing chromosome scaffold1810 INFO [2014-03-08 06:26:04,379] [Preprocessor.java:241] [main] Processing chromosome scaffold1811 Processing chromosome scaffold1811 INFO [2014-03-08 06:26:04,396] [Preprocessor.java:241] [main] Processing chromosome scaffold1812 Processing chromosome scaffold1812 INFO [2014-03-08 06:26:04,413] [Preprocessor.java:241] [main] Processing chromosome scaffold1813 Processing chromosome scaffold1813 INFO [2014-03-08 06:26:04,461] [Preprocessor.java:241] [main] Processing chromosome scaffold1814 Processing chromosome scaffold1814 INFO [2014-03-08 06:26:04,478] [Preprocessor.java:241] [main] Processing chromosome scaffold1815 Processing chromosome scaffold1815 INFO [2014-03-08 06:26:04,532] [Preprocessor.java:241] [main] Processing chromosome scaffold1816 Processing chromosome scaffold1816 INFO [2014-03-08 06:26:04,585] [Preprocessor.java:241] [main] Processing chromosome scaffold1817 Processing chromosome scaffold1817 INFO [2014-03-08 06:26:04,612] [Preprocessor.java:241] [main] Processing chromosome scaffold1818 Processing chromosome scaffold1818 INFO [2014-03-08 06:26:04,658] [Preprocessor.java:241] [main] Processing chromosome scaffold1819 Processing chromosome scaffold1819 INFO [2014-03-08 06:26:04,704] [Preprocessor.java:241] [main] Processing chromosome scaffold182 Processing chromosome scaffold182 INFO [2014-03-08 06:26:04,808] [Preprocessor.java:241] [main] Processing chromosome scaffold1820 Processing chromosome scaffold1820 INFO [2014-03-08 06:26:04,829] [Preprocessor.java:241] [main] Processing chromosome scaffold18202 Processing chromosome scaffold18202 INFO [2014-03-08 06:26:04,886] [Preprocessor.java:241] [main] Processing chromosome scaffold1821 Processing chromosome scaffold1821 INFO [2014-03-08 06:26:04,950] [Preprocessor.java:241] [main] Processing chromosome scaffold1822 Processing chromosome scaffold1822 INFO [2014-03-08 06:26:05,093] [Preprocessor.java:241] [main] Processing chromosome scaffold18220 Processing chromosome scaffold18220 INFO [2014-03-08 06:26:05,140] [Preprocessor.java:241] [main] Processing chromosome scaffold1823 Processing chromosome scaffold1823 INFO [2014-03-08 06:26:05,173] [Preprocessor.java:241] [main] Processing chromosome scaffold1824 Processing chromosome scaffold1824 INFO [2014-03-08 06:26:05,186] [Preprocessor.java:241] [main] Processing chromosome scaffold1825 Processing chromosome scaffold1825 INFO [2014-03-08 06:26:05,242] [Preprocessor.java:241] [main] Processing chromosome scaffold1826 Processing chromosome scaffold1826 INFO [2014-03-08 06:26:05,273] [Preprocessor.java:241] [main] Processing chromosome scaffold1827 Processing chromosome scaffold1827 INFO [2014-03-08 06:26:05,335] [Preprocessor.java:241] [main] Processing chromosome scaffold1828 Processing chromosome scaffold1828 INFO [2014-03-08 06:26:05,362] [Preprocessor.java:241] [main] Processing chromosome scaffold1829 Processing chromosome scaffold1829 INFO [2014-03-08 06:26:05,412] [Preprocessor.java:241] [main] Processing chromosome scaffold183 Processing chromosome scaffold183 INFO [2014-03-08 06:26:05,433] [Preprocessor.java:241] [main] Processing chromosome scaffold1830 Processing chromosome scaffold1830 .INFO [2014-03-08 06:26:05,455] [Preprocessor.java:241] [main] Processing chromosome scaffold1831 Processing chromosome scaffold1831 INFO [2014-03-08 06:26:05,475] [Preprocessor.java:241] [main] Processing chromosome scaffold1832 Processing chromosome scaffold1832 INFO [2014-03-08 06:26:05,559] [Preprocessor.java:241] [main] Processing chromosome scaffold1833 Processing chromosome scaffold1833 INFO [2014-03-08 06:26:05,574] [Preprocessor.java:241] [main] Processing chromosome scaffold1834 Processing chromosome scaffold1834 INFO [2014-03-08 06:26:05,704] [Preprocessor.java:241] [main] Processing chromosome scaffold1835 Processing chromosome scaffold1835 INFO [2014-03-08 06:26:05,805] [Preprocessor.java:241] [main] Processing chromosome scaffold1836 Processing chromosome scaffold1836 INFO [2014-03-08 06:26:06,007] [Preprocessor.java:241] [main] Processing chromosome scaffold1837 Processing chromosome scaffold1837 INFO [2014-03-08 06:26:06,024] [Preprocessor.java:241] [main] Processing chromosome scaffold1838 Processing chromosome scaffold1838 INFO [2014-03-08 06:26:06,132] [Preprocessor.java:241] [main] Processing chromosome scaffold1839 Processing chromosome scaffold1839 INFO [2014-03-08 06:26:06,179] [Preprocessor.java:241] [main] Processing chromosome scaffold184 Processing chromosome scaffold184 INFO [2014-03-08 06:26:06,233] [Preprocessor.java:241] [main] Processing chromosome scaffold1840 Processing chromosome scaffold1840 INFO [2014-03-08 06:26:06,263] [Preprocessor.java:241] [main] Processing chromosome scaffold18408 Processing chromosome scaffold18408 INFO [2014-03-08 06:26:06,271] [Preprocessor.java:241] [main] Processing chromosome scaffold1841 Processing chromosome scaffold1841 INFO [2014-03-08 06:26:06,382] [Preprocessor.java:241] [main] Processing chromosome scaffold1842 Processing chromosome scaffold1842 INFO [2014-03-08 06:26:06,430] [Preprocessor.java:241] [main] Processing chromosome scaffold1843 Processing chromosome scaffold1843 INFO [2014-03-08 06:26:06,512] [Preprocessor.java:241] [main] Processing chromosome scaffold1844 Processing chromosome scaffold1844 INFO [2014-03-08 06:26:06,589] [Preprocessor.java:241] [main] Processing chromosome scaffold1845 Processing chromosome scaffold1845 INFO [2014-03-08 06:26:06,646] [Preprocessor.java:241] [main] Processing chromosome scaffold1846 Processing chromosome scaffold1846 INFO [2014-03-08 06:26:06,700] [Preprocessor.java:241] [main] Processing chromosome scaffold18460 Processing chromosome scaffold18460 INFO [2014-03-08 06:26:06,713] [Preprocessor.java:241] [main] Processing chromosome scaffold1847 Processing chromosome scaffold1847 INFO [2014-03-08 06:26:06,762] [Preprocessor.java:241] [main] Processing chromosome scaffold1848 Processing chromosome scaffold1848 INFO [2014-03-08 06:26:06,870] [Preprocessor.java:241] [main] Processing chromosome scaffold1849 Processing chromosome scaffold1849 INFO [2014-03-08 06:26:06,967] [Preprocessor.java:241] [main] Processing chromosome scaffold185 Processing chromosome scaffold185 INFO [2014-03-08 06:26:06,974] [Preprocessor.java:241] [main] Processing chromosome scaffold1850 Processing chromosome scaffold1850 INFO [2014-03-08 06:26:07,048] [Preprocessor.java:241] [main] Processing chromosome scaffold1851 Processing chromosome scaffold1851 INFO [2014-03-08 06:26:07,108] [Preprocessor.java:241] [main] Processing chromosome scaffold1852 Processing chromosome scaffold1852 INFO [2014-03-08 06:26:07,155] [Preprocessor.java:241] [main] Processing chromosome scaffold1853 Processing chromosome scaffold1853 INFO [2014-03-08 06:26:07,168] [Preprocessor.java:241] [main] Processing chromosome scaffold1854 Processing chromosome scaffold1854 INFO [2014-03-08 06:26:07,206] [Preprocessor.java:241] [main] Processing chromosome scaffold1855 Processing chromosome scaffold1855 INFO [2014-03-08 06:26:07,337] [Preprocessor.java:241] [main] Processing chromosome scaffold1856 Processing chromosome scaffold1856 INFO [2014-03-08 06:26:07,398] [Preprocessor.java:241] [main] Processing chromosome scaffold1857 Processing chromosome scaffold1857 INFO [2014-03-08 06:26:07,519] [Preprocessor.java:241] [main] Processing chromosome scaffold1858 Processing chromosome scaffold1858 INFO [2014-03-08 06:26:07,602] [Preprocessor.java:241] [main] Processing chromosome scaffold1859 Processing chromosome scaffold1859 INFO [2014-03-08 06:26:07,676] [Preprocessor.java:241] [main] Processing chromosome scaffold186 Processing chromosome scaffold186 INFO [2014-03-08 06:26:07,805] [Preprocessor.java:241] [main] Processing chromosome scaffold1860 Processing chromosome scaffold1860 INFO [2014-03-08 06:26:07,905] [Preprocessor.java:241] [main] Processing chromosome scaffold1861 Processing chromosome scaffold1861 INFO [2014-03-08 06:26:07,929] [Preprocessor.java:241] [main] Processing chromosome scaffold1862 Processing chromosome scaffold1862 INFO [2014-03-08 06:26:08,082] [Preprocessor.java:241] [main] Processing chromosome scaffold1863 Processing chromosome scaffold1863 INFO [2014-03-08 06:26:08,162] [Preprocessor.java:241] [main] Processing chromosome scaffold1864 Processing chromosome scaffold1864 INFO [2014-03-08 06:26:08,191] [Preprocessor.java:241] [main] Processing chromosome scaffold1865 Processing chromosome scaffold1865 INFO [2014-03-08 06:26:08,257] [Preprocessor.java:241] [main] Processing chromosome scaffold1866 Processing chromosome scaffold1866 INFO [2014-03-08 06:26:08,357] [Preprocessor.java:241] [main] Processing chromosome scaffold1867 Processing chromosome scaffold1867 INFO [2014-03-08 06:26:08,405] [Preprocessor.java:241] [main] Processing chromosome scaffold1868 Processing chromosome scaffold1868 INFO [2014-03-08 06:26:08,457] [Preprocessor.java:241] [main] Processing chromosome scaffold1869 Processing chromosome scaffold1869 INFO [2014-03-08 06:26:08,568] [Preprocessor.java:241] [main] Processing chromosome scaffold187 Processing chromosome scaffold187 INFO [2014-03-08 06:26:08,589] [Preprocessor.java:241] [main] Processing chromosome scaffold1870 Processing chromosome scaffold1870 INFO [2014-03-08 06:26:08,710] [Preprocessor.java:241] [main] Processing chromosome scaffold1871 Processing chromosome scaffold1871 INFO [2014-03-08 06:26:08,766] [Preprocessor.java:241] [main] Processing chromosome scaffold1872 Processing chromosome scaffold1872 INFO [2014-03-08 06:26:08,830] [Preprocessor.java:241] [main] Processing chromosome scaffold18720 Processing chromosome scaffold18720 INFO [2014-03-08 06:26:08,877] [Preprocessor.java:241] [main] Processing chromosome scaffold1873 Processing chromosome scaffold1873 INFO [2014-03-08 06:26:08,923] [Preprocessor.java:241] [main] Processing chromosome scaffold1874 Processing chromosome scaffold1874 INFO [2014-03-08 06:26:08,971] [Preprocessor.java:241] [main] Processing chromosome scaffold1875 Processing chromosome scaffold1875 .INFO [2014-03-08 06:26:08,995] [Preprocessor.java:241] [main] Processing chromosome scaffold1876 Processing chromosome scaffold1876 INFO [2014-03-08 06:26:09,038] [Preprocessor.java:241] [main] Processing chromosome scaffold1877 Processing chromosome scaffold1877 INFO [2014-03-08 06:26:09,085] [Preprocessor.java:241] [main] Processing chromosome scaffold1878 Processing chromosome scaffold1878 INFO [2014-03-08 06:26:09,119] [Preprocessor.java:241] [main] Processing chromosome scaffold1879 Processing chromosome scaffold1879 INFO [2014-03-08 06:26:09,186] [Preprocessor.java:241] [main] Processing chromosome scaffold188 Processing chromosome scaffold188 INFO [2014-03-08 06:26:09,237] [Preprocessor.java:241] [main] Processing chromosome scaffold1880 Processing chromosome scaffold1880 INFO [2014-03-08 06:26:09,328] [Preprocessor.java:241] [main] Processing chromosome scaffold1881 Processing chromosome scaffold1881 INFO [2014-03-08 06:26:09,384] [Preprocessor.java:241] [main] Processing chromosome scaffold1882 Processing chromosome scaffold1882 INFO [2014-03-08 06:26:09,442] [Preprocessor.java:241] [main] Processing chromosome scaffold1883 Processing chromosome scaffold1883 INFO [2014-03-08 06:26:09,492] [Preprocessor.java:241] [main] Processing chromosome scaffold18830 Processing chromosome scaffold18830 INFO [2014-03-08 06:26:09,504] [Preprocessor.java:241] [main] Processing chromosome scaffold1884 Processing chromosome scaffold1884 INFO [2014-03-08 06:26:09,594] [Preprocessor.java:241] [main] Processing chromosome scaffold1885 Processing chromosome scaffold1885 INFO [2014-03-08 06:26:09,651] [Preprocessor.java:241] [main] Processing chromosome scaffold1886 Processing chromosome scaffold1886 INFO [2014-03-08 06:26:09,702] [Preprocessor.java:241] [main] Processing chromosome scaffold1887 Processing chromosome scaffold1887 INFO [2014-03-08 06:26:09,737] [Preprocessor.java:241] [main] Processing chromosome scaffold1888 Processing chromosome scaffold1888 INFO [2014-03-08 06:26:09,808] [Preprocessor.java:241] [main] Processing chromosome scaffold1889 Processing chromosome scaffold1889 INFO [2014-03-08 06:26:09,890] [Preprocessor.java:241] [main] Processing chromosome scaffold189 Processing chromosome scaffold189 INFO [2014-03-08 06:26:09,988] [Preprocessor.java:241] [main] Processing chromosome scaffold1890 Processing chromosome scaffold1890 INFO [2014-03-08 06:26:10,056] [Preprocessor.java:241] [main] Processing chromosome scaffold1891 Processing chromosome scaffold1891 INFO [2014-03-08 06:26:10,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1892 Processing chromosome scaffold1892 INFO [2014-03-08 06:26:10,225] [Preprocessor.java:241] [main] Processing chromosome scaffold1893 Processing chromosome scaffold1893 INFO [2014-03-08 06:26:10,313] [Preprocessor.java:241] [main] Processing chromosome scaffold1894 Processing chromosome scaffold1894 INFO [2014-03-08 06:26:10,362] [Preprocessor.java:241] [main] Processing chromosome scaffold1895 Processing chromosome scaffold1895 INFO [2014-03-08 06:26:10,503] [Preprocessor.java:241] [main] Processing chromosome scaffold1896 Processing chromosome scaffold1896 INFO [2014-03-08 06:26:10,670] [Preprocessor.java:241] [main] Processing chromosome scaffold1897 Processing chromosome scaffold1897 INFO [2014-03-08 06:26:10,820] [Preprocessor.java:241] [main] Processing chromosome scaffold1898 Processing chromosome scaffold1898 INFO [2014-03-08 06:26:10,889] [Preprocessor.java:241] [main] Processing chromosome scaffold1899 Processing chromosome scaffold1899 INFO [2014-03-08 06:26:10,962] [Preprocessor.java:241] [main] Processing chromosome scaffold19 Processing chromosome scaffold19 INFO [2014-03-08 06:26:11,035] [Preprocessor.java:241] [main] Processing chromosome scaffold190 Processing chromosome scaffold190 INFO [2014-03-08 06:26:11,109] [Preprocessor.java:241] [main] Processing chromosome scaffold1900 Processing chromosome scaffold1900 INFO [2014-03-08 06:26:11,229] [Preprocessor.java:241] [main] Processing chromosome scaffold1901 Processing chromosome scaffold1901 INFO [2014-03-08 06:26:11,335] [Preprocessor.java:241] [main] Processing chromosome scaffold191 Processing chromosome scaffold191 INFO [2014-03-08 06:26:11,395] [Preprocessor.java:241] [main] Processing chromosome scaffold19154 Processing chromosome scaffold19154 INFO [2014-03-08 06:26:11,403] [Preprocessor.java:241] [main] Processing chromosome scaffold192 Processing chromosome scaffold192 INFO [2014-03-08 06:26:11,651] [Preprocessor.java:241] [main] Processing chromosome scaffold19274 Processing chromosome scaffold19274 INFO [2014-03-08 06:26:11,675] [Preprocessor.java:241] [main] Processing chromosome scaffold19292 Processing chromosome scaffold19292 INFO [2014-03-08 06:26:11,693] [Preprocessor.java:241] [main] Processing chromosome scaffold193 Processing chromosome scaffold193 INFO [2014-03-08 06:26:11,817] [Preprocessor.java:241] [main] Processing chromosome scaffold19368 Processing chromosome scaffold19368 INFO [2014-03-08 06:26:11,843] [Preprocessor.java:241] [main] Processing chromosome scaffold194 Processing chromosome scaffold194 INFO [2014-03-08 06:26:11,907] [Preprocessor.java:241] [main] Processing chromosome scaffold19422 Processing chromosome scaffold19422 INFO [2014-03-08 06:26:11,920] [Preprocessor.java:241] [main] Processing chromosome scaffold19506 Processing chromosome scaffold19506 INFO [2014-03-08 06:26:11,970] [Preprocessor.java:241] [main] Processing chromosome scaffold196 Processing chromosome scaffold196 INFO [2014-03-08 06:26:12,023] [Preprocessor.java:241] [main] Processing chromosome scaffold19620 Processing chromosome scaffold19620 INFO [2014-03-08 06:26:12,046] [Preprocessor.java:241] [main] Processing chromosome scaffold19712 Processing chromosome scaffold19712 INFO [2014-03-08 06:26:12,082] [Preprocessor.java:241] [main] Processing chromosome scaffold19762 Processing chromosome scaffold19762 INFO [2014-03-08 06:26:12,092] [Preprocessor.java:241] [main] Processing chromosome scaffold198 Processing chromosome scaffold198 .INFO [2014-03-08 06:26:12,351] [Preprocessor.java:241] [main] Processing chromosome scaffold19806 Processing chromosome scaffold19806 INFO [2014-03-08 06:26:12,385] [Preprocessor.java:241] [main] Processing chromosome scaffold19892 Processing chromosome scaffold19892 INFO [2014-03-08 06:26:12,399] [Preprocessor.java:241] [main] Processing chromosome scaffold19922 Processing chromosome scaffold19922 INFO [2014-03-08 06:26:12,434] [Preprocessor.java:241] [main] Processing chromosome scaffold2 Processing chromosome scaffold2 INFO [2014-03-08 06:26:12,544] [Preprocessor.java:241] [main] Processing chromosome scaffold20 Processing chromosome scaffold20 INFO [2014-03-08 06:26:12,664] [Preprocessor.java:241] [main] Processing chromosome scaffold200 Processing chromosome scaffold200 INFO [2014-03-08 06:26:12,699] [Preprocessor.java:241] [main] Processing chromosome scaffold201 Processing chromosome scaffold201 INFO [2014-03-08 06:26:12,772] [Preprocessor.java:241] [main] Processing chromosome scaffold202 Processing chromosome scaffold202 INFO [2014-03-08 06:26:12,800] [Preprocessor.java:241] [main] Processing chromosome scaffold203 Processing chromosome scaffold203 INFO [2014-03-08 06:26:12,924] [Preprocessor.java:241] [main] Processing chromosome scaffold20312 Processing chromosome scaffold20312 INFO [2014-03-08 06:26:12,944] [Preprocessor.java:241] [main] Processing chromosome scaffold20336 Processing chromosome scaffold20336 INFO [2014-03-08 06:26:12,956] [Preprocessor.java:241] [main] Processing chromosome scaffold204 Processing chromosome scaffold204 INFO [2014-03-08 06:26:13,166] [Preprocessor.java:241] [main] Processing chromosome scaffold205 Processing chromosome scaffold205 INFO [2014-03-08 06:26:13,187] [Preprocessor.java:241] [main] Processing chromosome scaffold20542 Processing chromosome scaffold20542 INFO [2014-03-08 06:26:13,201] [Preprocessor.java:241] [main] Processing chromosome scaffold206 Processing chromosome scaffold206 INFO [2014-03-08 06:26:13,264] [Preprocessor.java:241] [main] Processing chromosome scaffold20602 Processing chromosome scaffold20602 INFO [2014-03-08 06:26:13,312] [Preprocessor.java:241] [main] Processing chromosome scaffold207 Processing chromosome scaffold207 INFO [2014-03-08 06:26:13,336] [Preprocessor.java:241] [main] Processing chromosome scaffold20744 Processing chromosome scaffold20744 INFO [2014-03-08 06:26:13,345] [Preprocessor.java:241] [main] Processing chromosome scaffold20758 Processing chromosome scaffold20758 INFO [2014-03-08 06:26:13,371] [Preprocessor.java:241] [main] Processing chromosome scaffold208 Processing chromosome scaffold208 INFO [2014-03-08 06:26:13,435] [Preprocessor.java:241] [main] Processing chromosome scaffold20836 Processing chromosome scaffold20836 INFO [2014-03-08 06:26:13,478] [Preprocessor.java:241] [main] Processing chromosome scaffold20868 Processing chromosome scaffold20868 INFO [2014-03-08 06:26:13,484] [Preprocessor.java:241] [main] Processing chromosome scaffold209 Processing chromosome scaffold209 INFO [2014-03-08 06:26:13,554] [Preprocessor.java:241] [main] Processing chromosome scaffold21 Processing chromosome scaffold21 INFO [2014-03-08 06:26:13,582] [Preprocessor.java:241] [main] Processing chromosome scaffold210 Processing chromosome scaffold210 INFO [2014-03-08 06:26:13,696] [Preprocessor.java:241] [main] Processing chromosome scaffold21010 Processing chromosome scaffold21010 INFO [2014-03-08 06:26:13,726] [Preprocessor.java:241] [main] Processing chromosome scaffold21056 Processing chromosome scaffold21056 INFO [2014-03-08 06:26:13,747] [Preprocessor.java:241] [main] Processing chromosome scaffold21086 Processing chromosome scaffold21086 INFO [2014-03-08 06:26:13,760] [Preprocessor.java:241] [main] Processing chromosome scaffold21088 Processing chromosome scaffold21088 INFO [2014-03-08 06:26:13,771] [Preprocessor.java:241] [main] Processing chromosome scaffold211 Processing chromosome scaffold211 INFO [2014-03-08 06:26:13,980] [Preprocessor.java:241] [main] Processing chromosome scaffold212 Processing chromosome scaffold212 INFO [2014-03-08 06:26:13,993] [Preprocessor.java:241] [main] Processing chromosome scaffold21290 Processing chromosome scaffold21290 INFO [2014-03-08 06:26:14,042] [Preprocessor.java:241] [main] Processing chromosome scaffold213 Processing chromosome scaffold213 INFO [2014-03-08 06:26:14,071] [Preprocessor.java:241] [main] Processing chromosome scaffold21434 Processing chromosome scaffold21434 INFO [2014-03-08 06:26:14,082] [Preprocessor.java:241] [main] Processing chromosome scaffold215 Processing chromosome scaffold215 INFO [2014-03-08 06:26:14,137] [Preprocessor.java:241] [main] Processing chromosome scaffold21506 Processing chromosome scaffold21506 INFO [2014-03-08 06:26:14,160] [Preprocessor.java:241] [main] Processing chromosome scaffold21682 Processing chromosome scaffold21682 INFO [2014-03-08 06:26:14,202] [Preprocessor.java:241] [main] Processing chromosome scaffold21736 Processing chromosome scaffold21736 INFO [2014-03-08 06:26:14,211] [Preprocessor.java:241] [main] Processing chromosome scaffold21754 Processing chromosome scaffold21754 INFO [2014-03-08 06:26:14,217] [Preprocessor.java:241] [main] Processing chromosome scaffold218 Processing chromosome scaffold218 INFO [2014-03-08 06:26:14,284] [Preprocessor.java:241] [main] Processing chromosome scaffold21890 Processing chromosome scaffold21890 INFO [2014-03-08 06:26:14,291] [Preprocessor.java:241] [main] Processing chromosome scaffold219 Processing chromosome scaffold219 INFO [2014-03-08 06:26:14,380] [Preprocessor.java:241] [main] Processing chromosome scaffold21920 Processing chromosome scaffold21920 INFO [2014-03-08 06:26:14,419] [Preprocessor.java:241] [main] Processing chromosome scaffold21978 Processing chromosome scaffold21978 INFO [2014-03-08 06:26:14,423] [Preprocessor.java:241] [main] Processing chromosome scaffold21998 Processing chromosome scaffold21998 INFO [2014-03-08 06:26:14,432] [Preprocessor.java:241] [main] Processing chromosome scaffold22 Processing chromosome scaffold22 INFO [2014-03-08 06:26:14,719] [Preprocessor.java:241] [main] Processing chromosome scaffold220 Processing chromosome scaffold220 INFO [2014-03-08 06:26:14,733] [Preprocessor.java:241] [main] Processing chromosome scaffold22030 Processing chromosome scaffold22030 INFO [2014-03-08 06:26:14,752] [Preprocessor.java:241] [main] Processing chromosome scaffold22038 Processing chromosome scaffold22038 INFO [2014-03-08 06:26:14,758] [Preprocessor.java:241] [main] Processing chromosome scaffold221 Processing chromosome scaffold221 INFO [2014-03-08 06:26:14,781] [Preprocessor.java:241] [main] Processing chromosome scaffold222 Processing chromosome scaffold222 INFO [2014-03-08 06:26:14,815] [Preprocessor.java:241] [main] Processing chromosome scaffold22228 Processing chromosome scaffold22228 INFO [2014-03-08 06:26:14,871] [Preprocessor.java:241] [main] Processing chromosome scaffold22240 Processing chromosome scaffold22240 INFO [2014-03-08 06:26:14,885] [Preprocessor.java:241] [main] Processing chromosome scaffold223 Processing chromosome scaffold223 INFO [2014-03-08 06:26:14,961] [Preprocessor.java:241] [main] Processing chromosome scaffold224 Processing chromosome scaffold224 INFO [2014-03-08 06:26:15,008] [Preprocessor.java:241] [main] Processing chromosome scaffold22464 Processing chromosome scaffold22464 INFO [2014-03-08 06:26:15,028] [Preprocessor.java:241] [main] Processing chromosome scaffold22488 Processing chromosome scaffold22488 INFO [2014-03-08 06:26:15,052] [Preprocessor.java:241] [main] Processing chromosome scaffold226 Processing chromosome scaffold226 INFO [2014-03-08 06:26:15,292] [Preprocessor.java:241] [main] Processing chromosome scaffold22670 Processing chromosome scaffold22670 INFO [2014-03-08 06:26:15,306] [Preprocessor.java:241] [main] Processing chromosome scaffold227 Processing chromosome scaffold227 INFO [2014-03-08 06:26:15,414] [Preprocessor.java:241] [main] Processing chromosome scaffold22766 Processing chromosome scaffold22766 INFO [2014-03-08 06:26:15,432] [Preprocessor.java:241] [main] Processing chromosome scaffold228 Processing chromosome scaffold228 INFO [2014-03-08 06:26:15,448] [Preprocessor.java:241] [main] Processing chromosome scaffold229 Processing chromosome scaffold229 INFO [2014-03-08 06:26:15,475] [Preprocessor.java:241] [main] Processing chromosome scaffold230 Processing chromosome scaffold230 INFO [2014-03-08 06:26:15,525] [Preprocessor.java:241] [main] Processing chromosome scaffold231 Processing chromosome scaffold231 INFO [2014-03-08 06:26:15,536] [Preprocessor.java:241] [main] Processing chromosome scaffold232 Processing chromosome scaffold232 INFO [2014-03-08 06:26:15,573] [Preprocessor.java:241] [main] Processing chromosome scaffold23228 Processing chromosome scaffold23228 INFO [2014-03-08 06:26:15,582] [Preprocessor.java:241] [main] Processing chromosome scaffold23242 Processing chromosome scaffold23242 INFO [2014-03-08 06:26:15,586] [Preprocessor.java:241] [main] Processing chromosome scaffold23290 Processing chromosome scaffold23290 INFO [2014-03-08 06:26:15,633] [Preprocessor.java:241] [main] Processing chromosome scaffold233 Processing chromosome scaffold233 INFO [2014-03-08 06:26:15,637] [Preprocessor.java:241] [main] Processing chromosome scaffold23358 Processing chromosome scaffold23358 INFO [2014-03-08 06:26:15,718] [Preprocessor.java:241] [main] Processing chromosome scaffold234 Processing chromosome scaffold234 INFO [2014-03-08 06:26:15,740] [Preprocessor.java:241] [main] Processing chromosome scaffold235 Processing chromosome scaffold235 INFO [2014-03-08 06:26:15,764] [Preprocessor.java:241] [main] Processing chromosome scaffold23524 Processing chromosome scaffold23524 INFO [2014-03-08 06:26:15,770] [Preprocessor.java:241] [main] Processing chromosome scaffold23536 Processing chromosome scaffold23536 INFO [2014-03-08 06:26:15,775] [Preprocessor.java:241] [main] Processing chromosome scaffold236 Processing chromosome scaffold236 INFO [2014-03-08 06:26:15,885] [Preprocessor.java:241] [main] Processing chromosome scaffold23696 Processing chromosome scaffold23696 INFO [2014-03-08 06:26:15,906] [Preprocessor.java:241] [main] Processing chromosome scaffold237 Processing chromosome scaffold237 INFO [2014-03-08 06:26:16,045] [Preprocessor.java:241] [main] Processing chromosome scaffold23816 Processing chromosome scaffold23816 INFO [2014-03-08 06:26:16,055] [Preprocessor.java:241] [main] Processing chromosome scaffold23842 Processing chromosome scaffold23842 INFO [2014-03-08 06:26:16,075] [Preprocessor.java:241] [main] Processing chromosome scaffold23854 Processing chromosome scaffold23854 INFO [2014-03-08 06:26:16,078] [Preprocessor.java:241] [main] Processing chromosome scaffold24 Processing chromosome scaffold24 INFO [2014-03-08 06:26:16,086] [Preprocessor.java:241] [main] Processing chromosome scaffold240 Processing chromosome scaffold240 INFO [2014-03-08 06:26:16,129] [Preprocessor.java:241] [main] Processing chromosome scaffold24002 Processing chromosome scaffold24002 INFO [2014-03-08 06:26:16,170] [Preprocessor.java:241] [main] Processing chromosome scaffold24006 Processing chromosome scaffold24006 INFO [2014-03-08 06:26:16,182] [Preprocessor.java:241] [main] Processing chromosome scaffold24028 Processing chromosome scaffold24028 INFO [2014-03-08 06:26:16,214] [Preprocessor.java:241] [main] Processing chromosome scaffold24066 Processing chromosome scaffold24066 INFO [2014-03-08 06:26:16,234] [Preprocessor.java:241] [main] Processing chromosome scaffold24094 Processing chromosome scaffold24094 INFO [2014-03-08 06:26:16,241] [Preprocessor.java:241] [main] Processing chromosome scaffold241 Processing chromosome scaffold241 .INFO [2014-03-08 06:26:16,413] [Preprocessor.java:241] [main] Processing chromosome scaffold24102 Processing chromosome scaffold24102 INFO [2014-03-08 06:26:16,427] [Preprocessor.java:241] [main] Processing chromosome scaffold242 Processing chromosome scaffold242 INFO [2014-03-08 06:26:16,459] [Preprocessor.java:241] [main] Processing chromosome scaffold24238 Processing chromosome scaffold24238 INFO [2014-03-08 06:26:16,486] [Preprocessor.java:241] [main] Processing chromosome scaffold243 Processing chromosome scaffold243 INFO [2014-03-08 06:26:16,518] [Preprocessor.java:241] [main] Processing chromosome scaffold24332 Processing chromosome scaffold24332 INFO [2014-03-08 06:26:16,522] [Preprocessor.java:241] [main] Processing chromosome scaffold244 Processing chromosome scaffold244 INFO [2014-03-08 06:26:16,549] [Preprocessor.java:241] [main] Processing chromosome scaffold24410 Processing chromosome scaffold24410 INFO [2014-03-08 06:26:16,569] [Preprocessor.java:241] [main] Processing chromosome scaffold24412 Processing chromosome scaffold24412 INFO [2014-03-08 06:26:16,579] [Preprocessor.java:241] [main] Processing chromosome scaffold24484 Processing chromosome scaffold24484 INFO [2014-03-08 06:26:16,592] [Preprocessor.java:241] [main] Processing chromosome scaffold245 Processing chromosome scaffold245 INFO [2014-03-08 06:26:16,597] [Preprocessor.java:241] [main] Processing chromosome scaffold24554 Processing chromosome scaffold24554 INFO [2014-03-08 06:26:16,605] [Preprocessor.java:241] [main] Processing chromosome scaffold246 Processing chromosome scaffold246 INFO [2014-03-08 06:26:16,643] [Preprocessor.java:241] [main] Processing chromosome scaffold247 Processing chromosome scaffold247 INFO [2014-03-08 06:26:16,687] [Preprocessor.java:241] [main] Processing chromosome scaffold24702 Processing chromosome scaffold24702 INFO [2014-03-08 06:26:16,694] [Preprocessor.java:241] [main] Processing chromosome scaffold24772 Processing chromosome scaffold24772 INFO [2014-03-08 06:26:16,698] [Preprocessor.java:241] [main] Processing chromosome scaffold24776 Processing chromosome scaffold24776 INFO [2014-03-08 06:26:16,705] [Preprocessor.java:241] [main] Processing chromosome scaffold24784 Processing chromosome scaffold24784 INFO [2014-03-08 06:26:16,777] [Preprocessor.java:241] [main] Processing chromosome scaffold24786 Processing chromosome scaffold24786 INFO [2014-03-08 06:26:16,785] [Preprocessor.java:241] [main] Processing chromosome scaffold248 Processing chromosome scaffold248 INFO [2014-03-08 06:26:16,885] [Preprocessor.java:241] [main] Processing chromosome scaffold24950 Processing chromosome scaffold24950 INFO [2014-03-08 06:26:16,918] [Preprocessor.java:241] [main] Processing chromosome scaffold24958 Processing chromosome scaffold24958 INFO [2014-03-08 06:26:16,926] [Preprocessor.java:241] [main] Processing chromosome scaffold25 Processing chromosome scaffold25 INFO [2014-03-08 06:26:16,993] [Preprocessor.java:241] [main] Processing chromosome scaffold250 Processing chromosome scaffold250 INFO [2014-03-08 06:26:17,009] [Preprocessor.java:241] [main] Processing chromosome scaffold251 Processing chromosome scaffold251 INFO [2014-03-08 06:26:17,067] [Preprocessor.java:241] [main] Processing chromosome scaffold25146 Processing chromosome scaffold25146 INFO [2014-03-08 06:26:17,070] [Preprocessor.java:241] [main] Processing chromosome scaffold252 Processing chromosome scaffold252 INFO [2014-03-08 06:26:17,157] [Preprocessor.java:241] [main] Processing chromosome scaffold25200 Processing chromosome scaffold25200 INFO [2014-03-08 06:26:17,164] [Preprocessor.java:241] [main] Processing chromosome scaffold25224 Processing chromosome scaffold25224 INFO [2014-03-08 06:26:17,170] [Preprocessor.java:241] [main] Processing chromosome scaffold25246 Processing chromosome scaffold25246 INFO [2014-03-08 06:26:17,173] [Preprocessor.java:241] [main] Processing chromosome scaffold25252 Processing chromosome scaffold25252 INFO [2014-03-08 06:26:17,183] [Preprocessor.java:241] [main] Processing chromosome scaffold25284 Processing chromosome scaffold25284 INFO [2014-03-08 06:26:17,197] [Preprocessor.java:241] [main] Processing chromosome scaffold253 Processing chromosome scaffold253 INFO [2014-03-08 06:26:17,236] [Preprocessor.java:241] [main] Processing chromosome scaffold254 Processing chromosome scaffold254 INFO [2014-03-08 06:26:17,258] [Preprocessor.java:241] [main] Processing chromosome scaffold25462 Processing chromosome scaffold25462 INFO [2014-03-08 06:26:17,277] [Preprocessor.java:241] [main] Processing chromosome scaffold25474 Processing chromosome scaffold25474 INFO [2014-03-08 06:26:17,289] [Preprocessor.java:241] [main] Processing chromosome scaffold255 Processing chromosome scaffold255 INFO [2014-03-08 06:26:17,294] [Preprocessor.java:241] [main] Processing chromosome scaffold25520 Processing chromosome scaffold25520 INFO [2014-03-08 06:26:17,302] [Preprocessor.java:241] [main] Processing chromosome scaffold256 Processing chromosome scaffold256 INFO [2014-03-08 06:26:17,325] [Preprocessor.java:241] [main] Processing chromosome scaffold25628 Processing chromosome scaffold25628 INFO [2014-03-08 06:26:17,334] [Preprocessor.java:241] [main] Processing chromosome scaffold25658 Processing chromosome scaffold25658 INFO [2014-03-08 06:26:17,362] [Preprocessor.java:241] [main] Processing chromosome scaffold25660 Processing chromosome scaffold25660 INFO [2014-03-08 06:26:17,399] [Preprocessor.java:241] [main] Processing chromosome scaffold257 Processing chromosome scaffold257 INFO [2014-03-08 06:26:17,649] [Preprocessor.java:241] [main] Processing chromosome scaffold25710 Processing chromosome scaffold25710 INFO [2014-03-08 06:26:17,652] [Preprocessor.java:241] [main] Processing chromosome scaffold25716 Processing chromosome scaffold25716 INFO [2014-03-08 06:26:17,654] [Preprocessor.java:241] [main] Processing chromosome scaffold258 Processing chromosome scaffold258 INFO [2014-03-08 06:26:17,795] [Preprocessor.java:241] [main] Processing chromosome scaffold25846 Processing chromosome scaffold25846 INFO [2014-03-08 06:26:17,815] [Preprocessor.java:241] [main] Processing chromosome scaffold25910 Processing chromosome scaffold25910 INFO [2014-03-08 06:26:17,821] [Preprocessor.java:241] [main] Processing chromosome scaffold26 Processing chromosome scaffold26 INFO [2014-03-08 06:26:17,881] [Preprocessor.java:241] [main] Processing chromosome scaffold260 Processing chromosome scaffold260 INFO [2014-03-08 06:26:17,921] [Preprocessor.java:241] [main] Processing chromosome scaffold26074 Processing chromosome scaffold26074 INFO [2014-03-08 06:26:17,951] [Preprocessor.java:241] [main] Processing chromosome scaffold261 Processing chromosome scaffold261 INFO [2014-03-08 06:26:17,957] [Preprocessor.java:241] [main] Processing chromosome scaffold26176 Processing chromosome scaffold26176 INFO [2014-03-08 06:26:17,994] [Preprocessor.java:241] [main] Processing chromosome scaffold262 Processing chromosome scaffold262 INFO [2014-03-08 06:26:18,053] [Preprocessor.java:241] [main] Processing chromosome scaffold26218 Processing chromosome scaffold26218 INFO [2014-03-08 06:26:18,071] [Preprocessor.java:241] [main] Processing chromosome scaffold264 Processing chromosome scaffold264 INFO [2014-03-08 06:26:18,100] [Preprocessor.java:241] [main] Processing chromosome scaffold265 Processing chromosome scaffold265 INFO [2014-03-08 06:26:18,116] [Preprocessor.java:241] [main] Processing chromosome scaffold26586 Processing chromosome scaffold26586 INFO [2014-03-08 06:26:18,142] [Preprocessor.java:241] [main] Processing chromosome scaffold266 Processing chromosome scaffold266 INFO [2014-03-08 06:26:18,201] [Preprocessor.java:241] [main] Processing chromosome scaffold26634 Processing chromosome scaffold26634 INFO [2014-03-08 06:26:18,211] [Preprocessor.java:241] [main] Processing chromosome scaffold267 Processing chromosome scaffold267 INFO [2014-03-08 06:26:18,292] [Preprocessor.java:241] [main] Processing chromosome scaffold268 Processing chromosome scaffold268 INFO [2014-03-08 06:26:18,323] [Preprocessor.java:241] [main] Processing chromosome scaffold26804 Processing chromosome scaffold26804 INFO [2014-03-08 06:26:18,351] [Preprocessor.java:241] [main] Processing chromosome scaffold269 Processing chromosome scaffold269 INFO [2014-03-08 06:26:18,502] [Preprocessor.java:241] [main] Processing chromosome scaffold27 Processing chromosome scaffold27 INFO [2014-03-08 06:26:18,539] [Preprocessor.java:241] [main] Processing chromosome scaffold270 Processing chromosome scaffold270 INFO [2014-03-08 06:26:18,587] [Preprocessor.java:241] [main] Processing chromosome scaffold27078 Processing chromosome scaffold27078 INFO [2014-03-08 06:26:18,596] [Preprocessor.java:241] [main] Processing chromosome scaffold27080 Processing chromosome scaffold27080 INFO [2014-03-08 06:26:18,605] [Preprocessor.java:241] [main] Processing chromosome scaffold271 Processing chromosome scaffold271 INFO [2014-03-08 06:26:18,811] [Preprocessor.java:241] [main] Processing chromosome scaffold27192 Processing chromosome scaffold27192 INFO [2014-03-08 06:26:18,830] [Preprocessor.java:241] [main] Processing chromosome scaffold272 Processing chromosome scaffold272 INFO [2014-03-08 06:26:18,854] [Preprocessor.java:241] [main] Processing chromosome scaffold27274 Processing chromosome scaffold27274 INFO [2014-03-08 06:26:18,881] [Preprocessor.java:241] [main] Processing chromosome scaffold273 Processing chromosome scaffold273 INFO [2014-03-08 06:26:18,936] [Preprocessor.java:241] [main] Processing chromosome scaffold27302 Processing chromosome scaffold27302 INFO [2014-03-08 06:26:18,961] [Preprocessor.java:241] [main] Processing chromosome scaffold274 Processing chromosome scaffold274 INFO [2014-03-08 06:26:19,065] [Preprocessor.java:241] [main] Processing chromosome scaffold27422 Processing chromosome scaffold27422 INFO [2014-03-08 06:26:19,092] [Preprocessor.java:241] [main] Processing chromosome scaffold275 Processing chromosome scaffold275 INFO [2014-03-08 06:26:19,117] [Preprocessor.java:241] [main] Processing chromosome scaffold27582 Processing chromosome scaffold27582 INFO [2014-03-08 06:26:19,140] [Preprocessor.java:241] [main] Processing chromosome scaffold276 Processing chromosome scaffold276 INFO [2014-03-08 06:26:19,191] [Preprocessor.java:241] [main] Processing chromosome scaffold27608 Processing chromosome scaffold27608 INFO [2014-03-08 06:26:19,194] [Preprocessor.java:241] [main] Processing chromosome scaffold27618 Processing chromosome scaffold27618 INFO [2014-03-08 06:26:19,199] [Preprocessor.java:241] [main] Processing chromosome scaffold27654 Processing chromosome scaffold27654 INFO [2014-03-08 06:26:19,253] [Preprocessor.java:241] [main] Processing chromosome scaffold277 Processing chromosome scaffold277 INFO [2014-03-08 06:26:19,319] [Preprocessor.java:241] [main] Processing chromosome scaffold27724 Processing chromosome scaffold27724 INFO [2014-03-08 06:26:19,335] [Preprocessor.java:241] [main] Processing chromosome scaffold27740 Processing chromosome scaffold27740 INFO [2014-03-08 06:26:19,362] [Preprocessor.java:241] [main] Processing chromosome scaffold278 Processing chromosome scaffold278 INFO [2014-03-08 06:26:19,410] [Preprocessor.java:241] [main] Processing chromosome scaffold27804 Processing chromosome scaffold27804 INFO [2014-03-08 06:26:19,454] [Preprocessor.java:241] [main] Processing chromosome scaffold27810 Processing chromosome scaffold27810 INFO [2014-03-08 06:26:19,466] [Preprocessor.java:241] [main] Processing chromosome scaffold27818 Processing chromosome scaffold27818 INFO [2014-03-08 06:26:19,469] [Preprocessor.java:241] [main] Processing chromosome scaffold27856 Processing chromosome scaffold27856 INFO [2014-03-08 06:26:19,492] [Preprocessor.java:241] [main] Processing chromosome scaffold27858 Processing chromosome scaffold27858 INFO [2014-03-08 06:26:19,512] [Preprocessor.java:241] [main] Processing chromosome scaffold279 Processing chromosome scaffold279 INFO [2014-03-08 06:26:19,596] [Preprocessor.java:241] [main] Processing chromosome scaffold27958 Processing chromosome scaffold27958 INFO [2014-03-08 06:26:19,627] [Preprocessor.java:241] [main] Processing chromosome scaffold28 Processing chromosome scaffold28 INFO [2014-03-08 06:26:19,629] [Preprocessor.java:241] [main] Processing chromosome scaffold280 Processing chromosome scaffold280 INFO [2014-03-08 06:26:19,794] [Preprocessor.java:241] [main] Processing chromosome scaffold28092 Processing chromosome scaffold28092 INFO [2014-03-08 06:26:19,812] [Preprocessor.java:241] [main] Processing chromosome scaffold281 Processing chromosome scaffold281 INFO [2014-03-08 06:26:19,844] [Preprocessor.java:241] [main] Processing chromosome scaffold28112 Processing chromosome scaffold28112 INFO [2014-03-08 06:26:19,849] [Preprocessor.java:241] [main] Processing chromosome scaffold28134 Processing chromosome scaffold28134 INFO [2014-03-08 06:26:19,867] [Preprocessor.java:241] [main] Processing chromosome scaffold28138 Processing chromosome scaffold28138 INFO [2014-03-08 06:26:19,875] [Preprocessor.java:241] [main] Processing chromosome scaffold28182 Processing chromosome scaffold28182 INFO [2014-03-08 06:26:19,880] [Preprocessor.java:241] [main] Processing chromosome scaffold282 Processing chromosome scaffold282 INFO [2014-03-08 06:26:19,940] [Preprocessor.java:241] [main] Processing chromosome scaffold28290 Processing chromosome scaffold28290 INFO [2014-03-08 06:26:19,953] [Preprocessor.java:241] [main] Processing chromosome scaffold283 Processing chromosome scaffold283 INFO [2014-03-08 06:26:19,979] [Preprocessor.java:241] [main] Processing chromosome scaffold28314 Processing chromosome scaffold28314 INFO [2014-03-08 06:26:20,010] [Preprocessor.java:241] [main] Processing chromosome scaffold28372 Processing chromosome scaffold28372 INFO [2014-03-08 06:26:20,034] [Preprocessor.java:241] [main] Processing chromosome scaffold284 Processing chromosome scaffold284 INFO [2014-03-08 06:26:20,065] [Preprocessor.java:241] [main] Processing chromosome scaffold28424 Processing chromosome scaffold28424 INFO [2014-03-08 06:26:20,068] [Preprocessor.java:241] [main] Processing chromosome scaffold28478 Processing chromosome scaffold28478 INFO [2014-03-08 06:26:20,092] [Preprocessor.java:241] [main] Processing chromosome scaffold285 Processing chromosome scaffold285 INFO [2014-03-08 06:26:20,205] [Preprocessor.java:241] [main] Processing chromosome scaffold28564 Processing chromosome scaffold28564 INFO [2014-03-08 06:26:20,224] [Preprocessor.java:241] [main] Processing chromosome scaffold286 Processing chromosome scaffold286 INFO [2014-03-08 06:26:20,296] [Preprocessor.java:241] [main] Processing chromosome scaffold28612 Processing chromosome scaffold28612 INFO [2014-03-08 06:26:20,315] [Preprocessor.java:241] [main] Processing chromosome scaffold28672 Processing chromosome scaffold28672 INFO [2014-03-08 06:26:20,325] [Preprocessor.java:241] [main] Processing chromosome scaffold28682 Processing chromosome scaffold28682 INFO [2014-03-08 06:26:20,330] [Preprocessor.java:241] [main] Processing chromosome scaffold287 Processing chromosome scaffold287 INFO [2014-03-08 06:26:20,363] [Preprocessor.java:241] [main] Processing chromosome scaffold28720 Processing chromosome scaffold28720 INFO [2014-03-08 06:26:20,390] [Preprocessor.java:241] [main] Processing chromosome scaffold288 Processing chromosome scaffold288 INFO [2014-03-08 06:26:20,550] [Preprocessor.java:241] [main] Processing chromosome scaffold289 Processing chromosome scaffold289 INFO [2014-03-08 06:26:20,572] [Preprocessor.java:241] [main] Processing chromosome scaffold29 Processing chromosome scaffold29 INFO [2014-03-08 06:26:20,607] [Preprocessor.java:241] [main] Processing chromosome scaffold290 Processing chromosome scaffold290 INFO [2014-03-08 06:26:20,702] [Preprocessor.java:241] [main] Processing chromosome scaffold29000 Processing chromosome scaffold29000 INFO [2014-03-08 06:26:20,745] [Preprocessor.java:241] [main] Processing chromosome scaffold29020 Processing chromosome scaffold29020 INFO [2014-03-08 06:26:20,754] [Preprocessor.java:241] [main] Processing chromosome scaffold29034 Processing chromosome scaffold29034 INFO [2014-03-08 06:26:20,759] [Preprocessor.java:241] [main] Processing chromosome scaffold29068 Processing chromosome scaffold29068 INFO [2014-03-08 06:26:20,768] [Preprocessor.java:241] [main] Processing chromosome scaffold29078 Processing chromosome scaffold29078 INFO [2014-03-08 06:26:20,783] [Preprocessor.java:241] [main] Processing chromosome scaffold291 Processing chromosome scaffold291 INFO [2014-03-08 06:26:20,807] [Preprocessor.java:241] [main] Processing chromosome scaffold29126 Processing chromosome scaffold29126 INFO [2014-03-08 06:26:20,834] [Preprocessor.java:241] [main] Processing chromosome scaffold29142 Processing chromosome scaffold29142 INFO [2014-03-08 06:26:20,856] [Preprocessor.java:241] [main] Processing chromosome scaffold29146 Processing chromosome scaffold29146 INFO [2014-03-08 06:26:20,864] [Preprocessor.java:241] [main] Processing chromosome scaffold29148 Processing chromosome scaffold29148 INFO [2014-03-08 06:26:20,867] [Preprocessor.java:241] [main] Processing chromosome scaffold29152 Processing chromosome scaffold29152 INFO [2014-03-08 06:26:20,870] [Preprocessor.java:241] [main] Processing chromosome scaffold29166 Processing chromosome scaffold29166 INFO [2014-03-08 06:26:20,872] [Preprocessor.java:241] [main] Processing chromosome scaffold292 Processing chromosome scaffold292 INFO [2014-03-08 06:26:20,903] [Preprocessor.java:241] [main] Processing chromosome scaffold29220 Processing chromosome scaffold29220 INFO [2014-03-08 06:26:20,907] [Preprocessor.java:241] [main] Processing chromosome scaffold29236 Processing chromosome scaffold29236 INFO [2014-03-08 06:26:20,924] [Preprocessor.java:241] [main] Processing chromosome scaffold29316 Processing chromosome scaffold29316 INFO [2014-03-08 06:26:20,952] [Preprocessor.java:241] [main] Processing chromosome scaffold29334 Processing chromosome scaffold29334 INFO [2014-03-08 06:26:20,956] [Preprocessor.java:241] [main] Processing chromosome scaffold29336 Processing chromosome scaffold29336 INFO [2014-03-08 06:26:20,985] [Preprocessor.java:241] [main] Processing chromosome scaffold29372 Processing chromosome scaffold29372 INFO [2014-03-08 06:26:20,995] [Preprocessor.java:241] [main] Processing chromosome scaffold294 Processing chromosome scaffold294 INFO [2014-03-08 06:26:21,044] [Preprocessor.java:241] [main] Processing chromosome scaffold29468 Processing chromosome scaffold29468 INFO [2014-03-08 06:26:21,082] [Preprocessor.java:241] [main] Processing chromosome scaffold29486 Processing chromosome scaffold29486 INFO [2014-03-08 06:26:21,092] [Preprocessor.java:241] [main] Processing chromosome scaffold29492 Processing chromosome scaffold29492 INFO [2014-03-08 06:26:21,095] [Preprocessor.java:241] [main] Processing chromosome scaffold29496 Processing chromosome scaffold29496 INFO [2014-03-08 06:26:21,101] [Preprocessor.java:241] [main] Processing chromosome scaffold295 Processing chromosome scaffold295 INFO [2014-03-08 06:26:21,135] [Preprocessor.java:241] [main] Processing chromosome scaffold29522 Processing chromosome scaffold29522 INFO [2014-03-08 06:26:21,169] [Preprocessor.java:241] [main] Processing chromosome scaffold29534 Processing chromosome scaffold29534 INFO [2014-03-08 06:26:21,191] [Preprocessor.java:241] [main] Processing chromosome scaffold29580 Processing chromosome scaffold29580 INFO [2014-03-08 06:26:21,231] [Preprocessor.java:241] [main] Processing chromosome scaffold29598 Processing chromosome scaffold29598 INFO [2014-03-08 06:26:21,235] [Preprocessor.java:241] [main] Processing chromosome scaffold296 Processing chromosome scaffold296 INFO [2014-03-08 06:26:21,308] [Preprocessor.java:241] [main] Processing chromosome scaffold29654 Processing chromosome scaffold29654 INFO [2014-03-08 06:26:21,340] [Preprocessor.java:241] [main] Processing chromosome scaffold29660 Processing chromosome scaffold29660 INFO [2014-03-08 06:26:21,352] [Preprocessor.java:241] [main] Processing chromosome scaffold29712 Processing chromosome scaffold29712 INFO [2014-03-08 06:26:21,355] [Preprocessor.java:241] [main] Processing chromosome scaffold29728 Processing chromosome scaffold29728 INFO [2014-03-08 06:26:21,376] [Preprocessor.java:241] [main] Processing chromosome scaffold29738 Processing chromosome scaffold29738 INFO [2014-03-08 06:26:21,379] [Preprocessor.java:241] [main] Processing chromosome scaffold29760 Processing chromosome scaffold29760 INFO [2014-03-08 06:26:21,381] [Preprocessor.java:241] [main] Processing chromosome scaffold29776 Processing chromosome scaffold29776 INFO [2014-03-08 06:26:21,390] [Preprocessor.java:241] [main] Processing chromosome scaffold298 Processing chromosome scaffold298 INFO [2014-03-08 06:26:21,463] [Preprocessor.java:241] [main] Processing chromosome scaffold29802 Processing chromosome scaffold29802 INFO [2014-03-08 06:26:21,472] [Preprocessor.java:241] [main] Processing chromosome scaffold29818 Processing chromosome scaffold29818 INFO [2014-03-08 06:26:21,475] [Preprocessor.java:241] [main] Processing chromosome scaffold29842 Processing chromosome scaffold29842 INFO [2014-03-08 06:26:21,479] [Preprocessor.java:241] [main] Processing chromosome scaffold29846 Processing chromosome scaffold29846 INFO [2014-03-08 06:26:21,487] [Preprocessor.java:241] [main] Processing chromosome scaffold29852 Processing chromosome scaffold29852 INFO [2014-03-08 06:26:21,491] [Preprocessor.java:241] [main] Processing chromosome scaffold29856 Processing chromosome scaffold29856 INFO [2014-03-08 06:26:21,507] [Preprocessor.java:241] [main] Processing chromosome scaffold29874 Processing chromosome scaffold29874 INFO [2014-03-08 06:26:21,528] [Preprocessor.java:241] [main] Processing chromosome scaffold299 Processing chromosome scaffold299 INFO [2014-03-08 06:26:21,547] [Preprocessor.java:241] [main] Processing chromosome scaffold29906 Processing chromosome scaffold29906 INFO [2014-03-08 06:26:21,553] [Preprocessor.java:241] [main] Processing chromosome scaffold29912 Processing chromosome scaffold29912 INFO [2014-03-08 06:26:21,568] [Preprocessor.java:241] [main] Processing chromosome scaffold3 Processing chromosome scaffold3 .INFO [2014-03-08 06:26:21,775] [Preprocessor.java:241] [main] Processing chromosome scaffold30 Processing chromosome scaffold30 INFO [2014-03-08 06:26:21,789] [Preprocessor.java:241] [main] Processing chromosome scaffold300 Processing chromosome scaffold300 INFO [2014-03-08 06:26:21,801] [Preprocessor.java:241] [main] Processing chromosome scaffold30010 Processing chromosome scaffold30010 INFO [2014-03-08 06:26:21,806] [Preprocessor.java:241] [main] Processing chromosome scaffold30034 Processing chromosome scaffold30034 INFO [2014-03-08 06:26:21,816] [Preprocessor.java:241] [main] Processing chromosome scaffold30052 Processing chromosome scaffold30052 INFO [2014-03-08 06:26:21,825] [Preprocessor.java:241] [main] Processing chromosome scaffold30068 Processing chromosome scaffold30068 INFO [2014-03-08 06:26:21,844] [Preprocessor.java:241] [main] Processing chromosome scaffold30078 Processing chromosome scaffold30078 INFO [2014-03-08 06:26:21,851] [Preprocessor.java:241] [main] Processing chromosome scaffold301 Processing chromosome scaffold301 INFO [2014-03-08 06:26:22,002] [Preprocessor.java:241] [main] Processing chromosome scaffold30150 Processing chromosome scaffold30150 INFO [2014-03-08 06:26:22,036] [Preprocessor.java:241] [main] Processing chromosome scaffold30164 Processing chromosome scaffold30164 INFO [2014-03-08 06:26:22,045] [Preprocessor.java:241] [main] Processing chromosome scaffold302 Processing chromosome scaffold302 INFO [2014-03-08 06:26:22,084] [Preprocessor.java:241] [main] Processing chromosome scaffold30212 Processing chromosome scaffold30212 INFO [2014-03-08 06:26:22,129] [Preprocessor.java:241] [main] Processing chromosome scaffold30230 Processing chromosome scaffold30230 INFO [2014-03-08 06:26:22,131] [Preprocessor.java:241] [main] Processing chromosome scaffold30256 Processing chromosome scaffold30256 INFO [2014-03-08 06:26:22,146] [Preprocessor.java:241] [main] Processing chromosome scaffold303 Processing chromosome scaffold303 INFO [2014-03-08 06:26:22,160] [Preprocessor.java:241] [main] Processing chromosome scaffold30304 Processing chromosome scaffold30304 INFO [2014-03-08 06:26:22,180] [Preprocessor.java:241] [main] Processing chromosome scaffold30314 Processing chromosome scaffold30314 INFO [2014-03-08 06:26:22,190] [Preprocessor.java:241] [main] Processing chromosome scaffold30348 Processing chromosome scaffold30348 INFO [2014-03-08 06:26:22,241] [Preprocessor.java:241] [main] Processing chromosome scaffold304 Processing chromosome scaffold304 INFO [2014-03-08 06:26:22,311] [Preprocessor.java:241] [main] Processing chromosome scaffold30442 Processing chromosome scaffold30442 INFO [2014-03-08 06:26:22,327] [Preprocessor.java:241] [main] Processing chromosome scaffold30462 Processing chromosome scaffold30462 INFO [2014-03-08 06:26:22,346] [Preprocessor.java:241] [main] Processing chromosome scaffold30486 Processing chromosome scaffold30486 INFO [2014-03-08 06:26:22,357] [Preprocessor.java:241] [main] Processing chromosome scaffold305 Processing chromosome scaffold305 INFO [2014-03-08 06:26:22,493] [Preprocessor.java:241] [main] Processing chromosome scaffold30524 Processing chromosome scaffold30524 INFO [2014-03-08 06:26:22,504] [Preprocessor.java:241] [main] Processing chromosome scaffold30556 Processing chromosome scaffold30556 INFO [2014-03-08 06:26:22,539] [Preprocessor.java:241] [main] Processing chromosome scaffold30596 Processing chromosome scaffold30596 INFO [2014-03-08 06:26:22,562] [Preprocessor.java:241] [main] Processing chromosome scaffold30598 Processing chromosome scaffold30598 INFO [2014-03-08 06:26:22,601] [Preprocessor.java:241] [main] Processing chromosome scaffold306 Processing chromosome scaffold306 INFO [2014-03-08 06:26:22,607] [Preprocessor.java:241] [main] Processing chromosome scaffold30610 Processing chromosome scaffold30610 INFO [2014-03-08 06:26:22,627] [Preprocessor.java:241] [main] Processing chromosome scaffold30616 Processing chromosome scaffold30616 INFO [2014-03-08 06:26:22,642] [Preprocessor.java:241] [main] Processing chromosome scaffold30654 Processing chromosome scaffold30654 INFO [2014-03-08 06:26:22,673] [Preprocessor.java:241] [main] Processing chromosome scaffold30658 Processing chromosome scaffold30658 INFO [2014-03-08 06:26:22,688] [Preprocessor.java:241] [main] Processing chromosome scaffold30672 Processing chromosome scaffold30672 INFO [2014-03-08 06:26:22,722] [Preprocessor.java:241] [main] Processing chromosome scaffold30678 Processing chromosome scaffold30678 INFO [2014-03-08 06:26:22,739] [Preprocessor.java:241] [main] Processing chromosome scaffold30682 Processing chromosome scaffold30682 INFO [2014-03-08 06:26:22,756] [Preprocessor.java:241] [main] Processing chromosome scaffold30690 Processing chromosome scaffold30690 INFO [2014-03-08 06:26:22,758] [Preprocessor.java:241] [main] Processing chromosome scaffold307 Processing chromosome scaffold307 INFO [2014-03-08 06:26:22,767] [Preprocessor.java:241] [main] Processing chromosome scaffold30702 Processing chromosome scaffold30702 INFO [2014-03-08 06:26:22,772] [Preprocessor.java:241] [main] Processing chromosome scaffold30712 Processing chromosome scaffold30712 INFO [2014-03-08 06:26:22,781] [Preprocessor.java:241] [main] Processing chromosome scaffold30716 Processing chromosome scaffold30716 INFO [2014-03-08 06:26:22,792] [Preprocessor.java:241] [main] Processing chromosome scaffold30744 Processing chromosome scaffold30744 INFO [2014-03-08 06:26:22,803] [Preprocessor.java:241] [main] Processing chromosome scaffold30774 Processing chromosome scaffold30774 INFO [2014-03-08 06:26:22,845] [Preprocessor.java:241] [main] Processing chromosome scaffold30794 Processing chromosome scaffold30794 INFO [2014-03-08 06:26:22,855] [Preprocessor.java:241] [main] Processing chromosome scaffold30798 Processing chromosome scaffold30798 INFO [2014-03-08 06:26:22,858] [Preprocessor.java:241] [main] Processing chromosome scaffold308 Processing chromosome scaffold308 INFO [2014-03-08 06:26:22,908] [Preprocessor.java:241] [main] Processing chromosome scaffold30814 Processing chromosome scaffold30814 INFO [2014-03-08 06:26:22,917] [Preprocessor.java:241] [main] Processing chromosome scaffold30818 Processing chromosome scaffold30818 INFO [2014-03-08 06:26:22,940] [Preprocessor.java:241] [main] Processing chromosome scaffold30826 Processing chromosome scaffold30826 INFO [2014-03-08 06:26:22,948] [Preprocessor.java:241] [main] Processing chromosome scaffold30854 Processing chromosome scaffold30854 INFO [2014-03-08 06:26:22,958] [Preprocessor.java:241] [main] Processing chromosome scaffold30894 Processing chromosome scaffold30894 INFO [2014-03-08 06:26:22,966] [Preprocessor.java:241] [main] Processing chromosome scaffold309 Processing chromosome scaffold309 INFO [2014-03-08 06:26:23,015] [Preprocessor.java:241] [main] Processing chromosome scaffold30902 Processing chromosome scaffold30902 INFO [2014-03-08 06:26:23,025] [Preprocessor.java:241] [main] Processing chromosome scaffold30922 Processing chromosome scaffold30922 INFO [2014-03-08 06:26:23,062] [Preprocessor.java:241] [main] Processing chromosome scaffold30976 Processing chromosome scaffold30976 INFO [2014-03-08 06:26:23,068] [Preprocessor.java:241] [main] Processing chromosome scaffold31 Processing chromosome scaffold31 INFO [2014-03-08 06:26:23,098] [Preprocessor.java:241] [main] Processing chromosome scaffold310 Processing chromosome scaffold310 INFO [2014-03-08 06:26:23,105] [Preprocessor.java:241] [main] Processing chromosome scaffold31002 Processing chromosome scaffold31002 INFO [2014-03-08 06:26:23,113] [Preprocessor.java:241] [main] Processing chromosome scaffold31008 Processing chromosome scaffold31008 INFO [2014-03-08 06:26:23,118] [Preprocessor.java:241] [main] Processing chromosome scaffold31018 Processing chromosome scaffold31018 INFO [2014-03-08 06:26:23,137] [Preprocessor.java:241] [main] Processing chromosome scaffold31032 Processing chromosome scaffold31032 INFO [2014-03-08 06:26:23,145] [Preprocessor.java:241] [main] Processing chromosome scaffold31038 Processing chromosome scaffold31038 INFO [2014-03-08 06:26:23,182] [Preprocessor.java:241] [main] Processing chromosome scaffold31080 Processing chromosome scaffold31080 INFO [2014-03-08 06:26:23,237] [Preprocessor.java:241] [main] Processing chromosome scaffold31090 Processing chromosome scaffold31090 INFO [2014-03-08 06:26:23,256] [Preprocessor.java:241] [main] Processing chromosome scaffold31098 Processing chromosome scaffold31098 INFO [2014-03-08 06:26:23,282] [Preprocessor.java:241] [main] Processing chromosome scaffold311 Processing chromosome scaffold311 INFO [2014-03-08 06:26:23,313] [Preprocessor.java:241] [main] Processing chromosome scaffold312 Processing chromosome scaffold312 INFO [2014-03-08 06:26:23,332] [Preprocessor.java:241] [main] Processing chromosome scaffold31208 Processing chromosome scaffold31208 INFO [2014-03-08 06:26:23,346] [Preprocessor.java:241] [main] Processing chromosome scaffold31212 Processing chromosome scaffold31212 INFO [2014-03-08 06:26:23,372] [Preprocessor.java:241] [main] Processing chromosome scaffold31222 Processing chromosome scaffold31222 INFO [2014-03-08 06:26:23,396] [Preprocessor.java:241] [main] Processing chromosome scaffold31228 Processing chromosome scaffold31228 INFO [2014-03-08 06:26:23,399] [Preprocessor.java:241] [main] Processing chromosome scaffold31230 Processing chromosome scaffold31230 INFO [2014-03-08 06:26:23,424] [Preprocessor.java:241] [main] Processing chromosome scaffold31238 Processing chromosome scaffold31238 INFO [2014-03-08 06:26:23,440] [Preprocessor.java:241] [main] Processing chromosome scaffold31250 Processing chromosome scaffold31250 INFO [2014-03-08 06:26:23,476] [Preprocessor.java:241] [main] Processing chromosome scaffold31258 Processing chromosome scaffold31258 INFO [2014-03-08 06:26:23,495] [Preprocessor.java:241] [main] Processing chromosome scaffold31282 Processing chromosome scaffold31282 INFO [2014-03-08 06:26:23,512] [Preprocessor.java:241] [main] Processing chromosome scaffold313 Processing chromosome scaffold313 INFO [2014-03-08 06:26:23,735] [Preprocessor.java:241] [main] Processing chromosome scaffold31308 Processing chromosome scaffold31308 INFO [2014-03-08 06:26:23,754] [Preprocessor.java:241] [main] Processing chromosome scaffold31318 Processing chromosome scaffold31318 INFO [2014-03-08 06:26:23,783] [Preprocessor.java:241] [main] Processing chromosome scaffold31320 Processing chromosome scaffold31320 INFO [2014-03-08 06:26:23,793] [Preprocessor.java:241] [main] Processing chromosome scaffold31330 Processing chromosome scaffold31330 INFO [2014-03-08 06:26:23,812] [Preprocessor.java:241] [main] Processing chromosome scaffold31334 Processing chromosome scaffold31334 INFO [2014-03-08 06:26:23,824] [Preprocessor.java:241] [main] Processing chromosome scaffold31348 Processing chromosome scaffold31348 INFO [2014-03-08 06:26:23,851] [Preprocessor.java:241] [main] Processing chromosome scaffold31376 Processing chromosome scaffold31376 INFO [2014-03-08 06:26:23,878] [Preprocessor.java:241] [main] Processing chromosome scaffold31378 Processing chromosome scaffold31378 INFO [2014-03-08 06:26:23,886] [Preprocessor.java:241] [main] Processing chromosome scaffold31382 Processing chromosome scaffold31382 INFO [2014-03-08 06:26:23,906] [Preprocessor.java:241] [main] Processing chromosome scaffold31388 Processing chromosome scaffold31388 INFO [2014-03-08 06:26:23,932] [Preprocessor.java:241] [main] Processing chromosome scaffold31392 Processing chromosome scaffold31392 INFO [2014-03-08 06:26:23,937] [Preprocessor.java:241] [main] Processing chromosome scaffold314 Processing chromosome scaffold314 INFO [2014-03-08 06:26:23,960] [Preprocessor.java:241] [main] Processing chromosome scaffold31440 Processing chromosome scaffold31440 INFO [2014-03-08 06:26:23,967] [Preprocessor.java:241] [main] Processing chromosome scaffold31454 Processing chromosome scaffold31454 INFO [2014-03-08 06:26:23,971] [Preprocessor.java:241] [main] Processing chromosome scaffold31464 Processing chromosome scaffold31464 INFO [2014-03-08 06:26:23,975] [Preprocessor.java:241] [main] Processing chromosome scaffold31478 Processing chromosome scaffold31478 INFO [2014-03-08 06:26:23,990] [Preprocessor.java:241] [main] Processing chromosome scaffold31484 Processing chromosome scaffold31484 INFO [2014-03-08 06:26:24,013] [Preprocessor.java:241] [main] Processing chromosome scaffold315 Processing chromosome scaffold315 INFO [2014-03-08 06:26:24,196] [Preprocessor.java:241] [main] Processing chromosome scaffold31512 Processing chromosome scaffold31512 INFO [2014-03-08 06:26:24,218] [Preprocessor.java:241] [main] Processing chromosome scaffold31514 Processing chromosome scaffold31514 INFO [2014-03-08 06:26:24,254] [Preprocessor.java:241] [main] Processing chromosome scaffold31524 Processing chromosome scaffold31524 INFO [2014-03-08 06:26:24,267] [Preprocessor.java:241] [main] Processing chromosome scaffold31534 Processing chromosome scaffold31534 INFO [2014-03-08 06:26:24,292] [Preprocessor.java:241] [main] Processing chromosome scaffold31538 Processing chromosome scaffold31538 INFO [2014-03-08 06:26:24,350] [Preprocessor.java:241] [main] Processing chromosome scaffold31556 Processing chromosome scaffold31556 INFO [2014-03-08 06:26:24,382] [Preprocessor.java:241] [main] Processing chromosome scaffold316 Processing chromosome scaffold316 INFO [2014-03-08 06:26:24,385] [Preprocessor.java:241] [main] Processing chromosome scaffold31624 Processing chromosome scaffold31624 INFO [2014-03-08 06:26:24,392] [Preprocessor.java:241] [main] Processing chromosome scaffold31638 Processing chromosome scaffold31638 INFO [2014-03-08 06:26:24,400] [Preprocessor.java:241] [main] Processing chromosome scaffold31640 Processing chromosome scaffold31640 INFO [2014-03-08 06:26:24,402] [Preprocessor.java:241] [main] Processing chromosome scaffold31660 Processing chromosome scaffold31660 INFO [2014-03-08 06:26:24,415] [Preprocessor.java:241] [main] Processing chromosome scaffold31680 Processing chromosome scaffold31680 INFO [2014-03-08 06:26:24,452] [Preprocessor.java:241] [main] Processing chromosome scaffold31684 Processing chromosome scaffold31684 INFO [2014-03-08 06:26:24,478] [Preprocessor.java:241] [main] Processing chromosome scaffold317 Processing chromosome scaffold317 INFO [2014-03-08 06:26:24,520] [Preprocessor.java:241] [main] Processing chromosome scaffold31716 Processing chromosome scaffold31716 INFO [2014-03-08 06:26:24,530] [Preprocessor.java:241] [main] Processing chromosome scaffold31720 Processing chromosome scaffold31720 INFO [2014-03-08 06:26:24,534] [Preprocessor.java:241] [main] Processing chromosome scaffold31736 Processing chromosome scaffold31736 INFO [2014-03-08 06:26:24,561] [Preprocessor.java:241] [main] Processing chromosome scaffold31748 Processing chromosome scaffold31748 INFO [2014-03-08 06:26:24,564] [Preprocessor.java:241] [main] Processing chromosome scaffold31752 Processing chromosome scaffold31752 INFO [2014-03-08 06:26:24,579] [Preprocessor.java:241] [main] Processing chromosome scaffold31756 Processing chromosome scaffold31756 INFO [2014-03-08 06:26:24,605] [Preprocessor.java:241] [main] Processing chromosome scaffold31770 Processing chromosome scaffold31770 INFO [2014-03-08 06:26:24,631] [Preprocessor.java:241] [main] Processing chromosome scaffold31784 Processing chromosome scaffold31784 INFO [2014-03-08 06:26:24,649] [Preprocessor.java:241] [main] Processing chromosome scaffold31792 Processing chromosome scaffold31792 INFO [2014-03-08 06:26:24,653] [Preprocessor.java:241] [main] Processing chromosome scaffold318 Processing chromosome scaffold318 INFO [2014-03-08 06:26:24,690] [Preprocessor.java:241] [main] Processing chromosome scaffold31816 Processing chromosome scaffold31816 INFO [2014-03-08 06:26:24,700] [Preprocessor.java:241] [main] Processing chromosome scaffold31834 Processing chromosome scaffold31834 INFO [2014-03-08 06:26:24,703] [Preprocessor.java:241] [main] Processing chromosome scaffold31842 Processing chromosome scaffold31842 INFO [2014-03-08 06:26:24,715] [Preprocessor.java:241] [main] Processing chromosome scaffold31864 Processing chromosome scaffold31864 INFO [2014-03-08 06:26:24,723] [Preprocessor.java:241] [main] Processing chromosome scaffold31880 Processing chromosome scaffold31880 INFO [2014-03-08 06:26:24,728] [Preprocessor.java:241] [main] Processing chromosome scaffold319 Processing chromosome scaffold319 INFO [2014-03-08 06:26:24,732] [Preprocessor.java:241] [main] Processing chromosome scaffold31900 Processing chromosome scaffold31900 INFO [2014-03-08 06:26:24,743] [Preprocessor.java:241] [main] Processing chromosome scaffold31920 Processing chromosome scaffold31920 INFO [2014-03-08 06:26:24,778] [Preprocessor.java:241] [main] Processing chromosome scaffold31954 Processing chromosome scaffold31954 INFO [2014-03-08 06:26:24,809] [Preprocessor.java:241] [main] Processing chromosome scaffold31956 Processing chromosome scaffold31956 INFO [2014-03-08 06:26:24,818] [Preprocessor.java:241] [main] Processing chromosome scaffold32 Processing chromosome scaffold32 INFO [2014-03-08 06:26:24,894] [Preprocessor.java:241] [main] Processing chromosome scaffold320 Processing chromosome scaffold320 INFO [2014-03-08 06:26:24,905] [Preprocessor.java:241] [main] Processing chromosome scaffold32014 Processing chromosome scaffold32014 INFO [2014-03-08 06:26:24,934] [Preprocessor.java:241] [main] Processing chromosome scaffold32024 Processing chromosome scaffold32024 INFO [2014-03-08 06:26:24,936] [Preprocessor.java:241] [main] Processing chromosome scaffold32030 Processing chromosome scaffold32030 INFO [2014-03-08 06:26:24,950] [Preprocessor.java:241] [main] Processing chromosome scaffold32048 Processing chromosome scaffold32048 INFO [2014-03-08 06:26:24,957] [Preprocessor.java:241] [main] Processing chromosome scaffold32064 Processing chromosome scaffold32064 INFO [2014-03-08 06:26:24,980] [Preprocessor.java:241] [main] Processing chromosome scaffold32086 Processing chromosome scaffold32086 INFO [2014-03-08 06:26:24,994] [Preprocessor.java:241] [main] Processing chromosome scaffold32094 Processing chromosome scaffold32094 INFO [2014-03-08 06:26:24,998] [Preprocessor.java:241] [main] Processing chromosome scaffold32096 Processing chromosome scaffold32096 INFO [2014-03-08 06:26:25,005] [Preprocessor.java:241] [main] Processing chromosome scaffold321 Processing chromosome scaffold321 INFO [2014-03-08 06:26:25,100] [Preprocessor.java:241] [main] Processing chromosome scaffold32102 Processing chromosome scaffold32102 INFO [2014-03-08 06:26:25,123] [Preprocessor.java:241] [main] Processing chromosome scaffold32118 Processing chromosome scaffold32118 INFO [2014-03-08 06:26:25,136] [Preprocessor.java:241] [main] Processing chromosome scaffold32120 Processing chromosome scaffold32120 INFO [2014-03-08 06:26:25,148] [Preprocessor.java:241] [main] Processing chromosome scaffold32140 Processing chromosome scaffold32140 INFO [2014-03-08 06:26:25,153] [Preprocessor.java:241] [main] Processing chromosome scaffold32142 Processing chromosome scaffold32142 INFO [2014-03-08 06:26:25,156] [Preprocessor.java:241] [main] Processing chromosome scaffold32160 Processing chromosome scaffold32160 INFO [2014-03-08 06:26:25,172] [Preprocessor.java:241] [main] Processing chromosome scaffold32178 Processing chromosome scaffold32178 INFO [2014-03-08 06:26:25,187] [Preprocessor.java:241] [main] Processing chromosome scaffold32180 Processing chromosome scaffold32180 INFO [2014-03-08 06:26:25,203] [Preprocessor.java:241] [main] Processing chromosome scaffold32192 Processing chromosome scaffold32192 INFO [2014-03-08 06:26:25,220] [Preprocessor.java:241] [main] Processing chromosome scaffold322 Processing chromosome scaffold322 INFO [2014-03-08 06:26:25,254] [Preprocessor.java:241] [main] Processing chromosome scaffold32202 Processing chromosome scaffold32202 INFO [2014-03-08 06:26:25,290] [Preprocessor.java:241] [main] Processing chromosome scaffold32230 Processing chromosome scaffold32230 INFO [2014-03-08 06:26:25,299] [Preprocessor.java:241] [main] Processing chromosome scaffold32252 Processing chromosome scaffold32252 INFO [2014-03-08 06:26:25,308] [Preprocessor.java:241] [main] Processing chromosome scaffold32258 Processing chromosome scaffold32258 INFO [2014-03-08 06:26:25,314] [Preprocessor.java:241] [main] Processing chromosome scaffold32282 Processing chromosome scaffold32282 INFO [2014-03-08 06:26:25,323] [Preprocessor.java:241] [main] Processing chromosome scaffold323 Processing chromosome scaffold323 INFO [2014-03-08 06:26:25,345] [Preprocessor.java:241] [main] Processing chromosome scaffold32300 Processing chromosome scaffold32300 INFO [2014-03-08 06:26:25,380] [Preprocessor.java:241] [main] Processing chromosome scaffold32330 Processing chromosome scaffold32330 INFO [2014-03-08 06:26:25,399] [Preprocessor.java:241] [main] Processing chromosome scaffold32342 Processing chromosome scaffold32342 INFO [2014-03-08 06:26:25,409] [Preprocessor.java:241] [main] Processing chromosome scaffold32346 Processing chromosome scaffold32346 INFO [2014-03-08 06:26:25,444] [Preprocessor.java:241] [main] Processing chromosome scaffold32356 Processing chromosome scaffold32356 INFO [2014-03-08 06:26:25,469] [Preprocessor.java:241] [main] Processing chromosome scaffold324 Processing chromosome scaffold324 INFO [2014-03-08 06:26:25,526] [Preprocessor.java:241] [main] Processing chromosome scaffold32410 Processing chromosome scaffold32410 INFO [2014-03-08 06:26:25,548] [Preprocessor.java:241] [main] Processing chromosome scaffold32436 Processing chromosome scaffold32436 INFO [2014-03-08 06:26:25,554] [Preprocessor.java:241] [main] Processing chromosome scaffold32452 Processing chromosome scaffold32452 INFO [2014-03-08 06:26:25,557] [Preprocessor.java:241] [main] Processing chromosome scaffold32470 Processing chromosome scaffold32470 INFO [2014-03-08 06:26:25,565] [Preprocessor.java:241] [main] Processing chromosome scaffold32488 Processing chromosome scaffold32488 INFO [2014-03-08 06:26:25,579] [Preprocessor.java:241] [main] Processing chromosome scaffold32494 Processing chromosome scaffold32494 INFO [2014-03-08 06:26:25,590] [Preprocessor.java:241] [main] Processing chromosome scaffold325 Processing chromosome scaffold325 INFO [2014-03-08 06:26:25,605] [Preprocessor.java:241] [main] Processing chromosome scaffold32520 Processing chromosome scaffold32520 INFO [2014-03-08 06:26:25,621] [Preprocessor.java:241] [main] Processing chromosome scaffold32526 Processing chromosome scaffold32526 INFO [2014-03-08 06:26:25,646] [Preprocessor.java:241] [main] Processing chromosome scaffold32530 Processing chromosome scaffold32530 INFO [2014-03-08 06:26:25,657] [Preprocessor.java:241] [main] Processing chromosome scaffold32546 Processing chromosome scaffold32546 INFO [2014-03-08 06:26:25,662] [Preprocessor.java:241] [main] Processing chromosome scaffold32566 Processing chromosome scaffold32566 INFO [2014-03-08 06:26:25,671] [Preprocessor.java:241] [main] Processing chromosome scaffold32586 Processing chromosome scaffold32586 INFO [2014-03-08 06:26:25,682] [Preprocessor.java:241] [main] Processing chromosome scaffold326 Processing chromosome scaffold326 INFO [2014-03-08 06:26:25,710] [Preprocessor.java:241] [main] Processing chromosome scaffold32604 Processing chromosome scaffold32604 INFO [2014-03-08 06:26:25,716] [Preprocessor.java:241] [main] Processing chromosome scaffold32618 Processing chromosome scaffold32618 INFO [2014-03-08 06:26:25,718] [Preprocessor.java:241] [main] Processing chromosome scaffold32624 Processing chromosome scaffold32624 INFO [2014-03-08 06:26:25,734] [Preprocessor.java:241] [main] Processing chromosome scaffold32632 Processing chromosome scaffold32632 INFO [2014-03-08 06:26:25,742] [Preprocessor.java:241] [main] Processing chromosome scaffold32642 Processing chromosome scaffold32642 INFO [2014-03-08 06:26:25,755] [Preprocessor.java:241] [main] Processing chromosome scaffold32646 Processing chromosome scaffold32646 INFO [2014-03-08 06:26:25,779] [Preprocessor.java:241] [main] Processing chromosome scaffold32666 Processing chromosome scaffold32666 INFO [2014-03-08 06:26:25,793] [Preprocessor.java:241] [main] Processing chromosome scaffold32686 Processing chromosome scaffold32686 INFO [2014-03-08 06:26:25,816] [Preprocessor.java:241] [main] Processing chromosome scaffold32688 Processing chromosome scaffold32688 INFO [2014-03-08 06:26:25,854] [Preprocessor.java:241] [main] Processing chromosome scaffold327 Processing chromosome scaffold327 INFO [2014-03-08 06:26:25,862] [Preprocessor.java:241] [main] Processing chromosome scaffold32708 Processing chromosome scaffold32708 INFO [2014-03-08 06:26:25,879] [Preprocessor.java:241] [main] Processing chromosome scaffold32718 Processing chromosome scaffold32718 INFO [2014-03-08 06:26:25,881] [Preprocessor.java:241] [main] Processing chromosome scaffold32726 Processing chromosome scaffold32726 INFO [2014-03-08 06:26:25,899] [Preprocessor.java:241] [main] Processing chromosome scaffold32754 Processing chromosome scaffold32754 INFO [2014-03-08 06:26:25,907] [Preprocessor.java:241] [main] Processing chromosome scaffold32768 Processing chromosome scaffold32768 INFO [2014-03-08 06:26:25,933] [Preprocessor.java:241] [main] Processing chromosome scaffold32770 Processing chromosome scaffold32770 INFO [2014-03-08 06:26:25,946] [Preprocessor.java:241] [main] Processing chromosome scaffold32782 Processing chromosome scaffold32782 INFO [2014-03-08 06:26:25,957] [Preprocessor.java:241] [main] Processing chromosome scaffold32786 Processing chromosome scaffold32786 INFO [2014-03-08 06:26:25,976] [Preprocessor.java:241] [main] Processing chromosome scaffold328 Processing chromosome scaffold328 INFO [2014-03-08 06:26:25,988] [Preprocessor.java:241] [main] Processing chromosome scaffold32822 Processing chromosome scaffold32822 INFO [2014-03-08 06:26:25,993] [Preprocessor.java:241] [main] Processing chromosome scaffold32844 Processing chromosome scaffold32844 INFO [2014-03-08 06:26:26,003] [Preprocessor.java:241] [main] Processing chromosome scaffold32850 Processing chromosome scaffold32850 INFO [2014-03-08 06:26:26,035] [Preprocessor.java:241] [main] Processing chromosome scaffold32864 Processing chromosome scaffold32864 INFO [2014-03-08 06:26:26,068] [Preprocessor.java:241] [main] Processing chromosome scaffold32894 Processing chromosome scaffold32894 INFO [2014-03-08 06:26:26,072] [Preprocessor.java:241] [main] Processing chromosome scaffold329 Processing chromosome scaffold329 INFO [2014-03-08 06:26:26,096] [Preprocessor.java:241] [main] Processing chromosome scaffold32900 Processing chromosome scaffold32900 INFO [2014-03-08 06:26:26,112] [Preprocessor.java:241] [main] Processing chromosome scaffold32912 Processing chromosome scaffold32912 INFO [2014-03-08 06:26:26,131] [Preprocessor.java:241] [main] Processing chromosome scaffold32922 Processing chromosome scaffold32922 INFO [2014-03-08 06:26:26,152] [Preprocessor.java:241] [main] Processing chromosome scaffold32956 Processing chromosome scaffold32956 INFO [2014-03-08 06:26:26,168] [Preprocessor.java:241] [main] Processing chromosome scaffold32970 Processing chromosome scaffold32970 INFO [2014-03-08 06:26:26,174] [Preprocessor.java:241] [main] Processing chromosome scaffold330 Processing chromosome scaffold330 INFO [2014-03-08 06:26:26,205] [Preprocessor.java:241] [main] Processing chromosome scaffold33010 Processing chromosome scaffold33010 INFO [2014-03-08 06:26:26,239] [Preprocessor.java:241] [main] Processing chromosome scaffold33026 Processing chromosome scaffold33026 INFO [2014-03-08 06:26:26,245] [Preprocessor.java:241] [main] Processing chromosome scaffold33030 Processing chromosome scaffold33030 INFO [2014-03-08 06:26:26,266] [Preprocessor.java:241] [main] Processing chromosome scaffold33032 Processing chromosome scaffold33032 INFO [2014-03-08 06:26:26,280] [Preprocessor.java:241] [main] Processing chromosome scaffold33036 Processing chromosome scaffold33036 INFO [2014-03-08 06:26:26,293] [Preprocessor.java:241] [main] Processing chromosome scaffold33042 Processing chromosome scaffold33042 INFO [2014-03-08 06:26:26,298] [Preprocessor.java:241] [main] Processing chromosome scaffold33046 Processing chromosome scaffold33046 INFO [2014-03-08 06:26:26,314] [Preprocessor.java:241] [main] Processing chromosome scaffold33048 Processing chromosome scaffold33048 INFO [2014-03-08 06:26:26,324] [Preprocessor.java:241] [main] Processing chromosome scaffold33050 Processing chromosome scaffold33050 INFO [2014-03-08 06:26:26,337] [Preprocessor.java:241] [main] Processing chromosome scaffold33052 Processing chromosome scaffold33052 INFO [2014-03-08 06:26:26,347] [Preprocessor.java:241] [main] Processing chromosome scaffold33056 Processing chromosome scaffold33056 INFO [2014-03-08 06:26:26,358] [Preprocessor.java:241] [main] Processing chromosome scaffold33064 Processing chromosome scaffold33064 INFO [2014-03-08 06:26:26,365] [Preprocessor.java:241] [main] Processing chromosome scaffold33066 Processing chromosome scaffold33066 INFO [2014-03-08 06:26:26,391] [Preprocessor.java:241] [main] Processing chromosome scaffold33072 Processing chromosome scaffold33072 INFO [2014-03-08 06:26:26,395] [Preprocessor.java:241] [main] Processing chromosome scaffold33074 Processing chromosome scaffold33074 INFO [2014-03-08 06:26:26,406] [Preprocessor.java:241] [main] Processing chromosome scaffold33082 Processing chromosome scaffold33082 INFO [2014-03-08 06:26:26,408] [Preprocessor.java:241] [main] Processing chromosome scaffold33090 Processing chromosome scaffold33090 INFO [2014-03-08 06:26:26,417] [Preprocessor.java:241] [main] Processing chromosome scaffold33094 Processing chromosome scaffold33094 INFO [2014-03-08 06:26:26,425] [Preprocessor.java:241] [main] Processing chromosome scaffold331 Processing chromosome scaffold331 INFO [2014-03-08 06:26:26,448] [Preprocessor.java:241] [main] Processing chromosome scaffold33108 Processing chromosome scaffold33108 INFO [2014-03-08 06:26:26,479] [Preprocessor.java:241] [main] Processing chromosome scaffold33118 Processing chromosome scaffold33118 INFO [2014-03-08 06:26:26,493] [Preprocessor.java:241] [main] Processing chromosome scaffold33122 Processing chromosome scaffold33122 INFO [2014-03-08 06:26:26,509] [Preprocessor.java:241] [main] Processing chromosome scaffold33132 Processing chromosome scaffold33132 INFO [2014-03-08 06:26:26,541] [Preprocessor.java:241] [main] Processing chromosome scaffold33134 Processing chromosome scaffold33134 INFO [2014-03-08 06:26:26,598] [Preprocessor.java:241] [main] Processing chromosome scaffold33146 Processing chromosome scaffold33146 INFO [2014-03-08 06:26:26,615] [Preprocessor.java:241] [main] Processing chromosome scaffold33154 Processing chromosome scaffold33154 INFO [2014-03-08 06:26:26,629] [Preprocessor.java:241] [main] Processing chromosome scaffold33158 Processing chromosome scaffold33158 INFO [2014-03-08 06:26:26,639] [Preprocessor.java:241] [main] Processing chromosome scaffold33164 Processing chromosome scaffold33164 INFO [2014-03-08 06:26:26,654] [Preprocessor.java:241] [main] Processing chromosome scaffold33178 Processing chromosome scaffold33178 INFO [2014-03-08 06:26:26,666] [Preprocessor.java:241] [main] Processing chromosome scaffold33184 Processing chromosome scaffold33184 INFO [2014-03-08 06:26:26,686] [Preprocessor.java:241] [main] Processing chromosome scaffold33192 Processing chromosome scaffold33192 INFO [2014-03-08 06:26:26,729] [Preprocessor.java:241] [main] Processing chromosome scaffold332 Processing chromosome scaffold332 INFO [2014-03-08 06:26:26,791] [Preprocessor.java:241] [main] Processing chromosome scaffold33210 Processing chromosome scaffold33210 INFO [2014-03-08 06:26:26,799] [Preprocessor.java:241] [main] Processing chromosome scaffold33224 Processing chromosome scaffold33224 INFO [2014-03-08 06:26:26,802] [Preprocessor.java:241] [main] Processing chromosome scaffold33238 Processing chromosome scaffold33238 INFO [2014-03-08 06:26:26,816] [Preprocessor.java:241] [main] Processing chromosome scaffold33242 Processing chromosome scaffold33242 INFO [2014-03-08 06:26:26,821] [Preprocessor.java:241] [main] Processing chromosome scaffold33248 Processing chromosome scaffold33248 INFO [2014-03-08 06:26:26,853] [Preprocessor.java:241] [main] Processing chromosome scaffold33254 Processing chromosome scaffold33254 INFO [2014-03-08 06:26:26,876] [Preprocessor.java:241] [main] Processing chromosome scaffold33272 Processing chromosome scaffold33272 INFO [2014-03-08 06:26:26,879] [Preprocessor.java:241] [main] Processing chromosome scaffold333 Processing chromosome scaffold333 INFO [2014-03-08 06:26:26,891] [Preprocessor.java:241] [main] Processing chromosome scaffold33304 Processing chromosome scaffold33304 INFO [2014-03-08 06:26:26,896] [Preprocessor.java:241] [main] Processing chromosome scaffold33340 Processing chromosome scaffold33340 INFO [2014-03-08 06:26:26,912] [Preprocessor.java:241] [main] Processing chromosome scaffold33342 Processing chromosome scaffold33342 INFO [2014-03-08 06:26:26,929] [Preprocessor.java:241] [main] Processing chromosome scaffold33346 Processing chromosome scaffold33346 INFO [2014-03-08 06:26:26,942] [Preprocessor.java:241] [main] Processing chromosome scaffold33352 Processing chromosome scaffold33352 INFO [2014-03-08 06:26:26,980] [Preprocessor.java:241] [main] Processing chromosome scaffold33360 Processing chromosome scaffold33360 INFO [2014-03-08 06:26:27,003] [Preprocessor.java:241] [main] Processing chromosome scaffold33364 Processing chromosome scaffold33364 INFO [2014-03-08 06:26:27,007] [Preprocessor.java:241] [main] Processing chromosome scaffold33382 Processing chromosome scaffold33382 INFO [2014-03-08 06:26:27,022] [Preprocessor.java:241] [main] Processing chromosome scaffold33390 Processing chromosome scaffold33390 INFO [2014-03-08 06:26:27,077] [Preprocessor.java:241] [main] Processing chromosome scaffold334 Processing chromosome scaffold334 INFO [2014-03-08 06:26:27,302] [Preprocessor.java:241] [main] Processing chromosome scaffold33412 Processing chromosome scaffold33412 INFO [2014-03-08 06:26:27,305] [Preprocessor.java:241] [main] Processing chromosome scaffold33414 Processing chromosome scaffold33414 INFO [2014-03-08 06:26:27,323] [Preprocessor.java:241] [main] Processing chromosome scaffold33424 Processing chromosome scaffold33424 INFO [2014-03-08 06:26:27,344] [Preprocessor.java:241] [main] Processing chromosome scaffold33428 Processing chromosome scaffold33428 INFO [2014-03-08 06:26:27,350] [Preprocessor.java:241] [main] Processing chromosome scaffold33432 Processing chromosome scaffold33432 INFO [2014-03-08 06:26:27,352] [Preprocessor.java:241] [main] Processing chromosome scaffold33454 Processing chromosome scaffold33454 INFO [2014-03-08 06:26:27,391] [Preprocessor.java:241] [main] Processing chromosome scaffold33462 Processing chromosome scaffold33462 INFO [2014-03-08 06:26:27,399] [Preprocessor.java:241] [main] Processing chromosome scaffold33466 Processing chromosome scaffold33466 INFO [2014-03-08 06:26:27,406] [Preprocessor.java:241] [main] Processing chromosome scaffold33486 Processing chromosome scaffold33486 INFO [2014-03-08 06:26:27,414] [Preprocessor.java:241] [main] Processing chromosome scaffold33498 Processing chromosome scaffold33498 INFO [2014-03-08 06:26:27,447] [Preprocessor.java:241] [main] Processing chromosome scaffold335 Processing chromosome scaffold335 INFO [2014-03-08 06:26:27,594] [Preprocessor.java:241] [main] Processing chromosome scaffold33500 Processing chromosome scaffold33500 INFO [2014-03-08 06:26:27,618] [Preprocessor.java:241] [main] Processing chromosome scaffold33512 Processing chromosome scaffold33512 INFO [2014-03-08 06:26:27,629] [Preprocessor.java:241] [main] Processing chromosome scaffold33518 Processing chromosome scaffold33518 INFO [2014-03-08 06:26:27,639] [Preprocessor.java:241] [main] Processing chromosome scaffold33530 Processing chromosome scaffold33530 INFO [2014-03-08 06:26:27,661] [Preprocessor.java:241] [main] Processing chromosome scaffold33554 Processing chromosome scaffold33554 INFO [2014-03-08 06:26:27,664] [Preprocessor.java:241] [main] Processing chromosome scaffold33584 Processing chromosome scaffold33584 INFO [2014-03-08 06:26:27,685] [Preprocessor.java:241] [main] Processing chromosome scaffold33588 Processing chromosome scaffold33588 INFO [2014-03-08 06:26:27,694] [Preprocessor.java:241] [main] Processing chromosome scaffold33590 Processing chromosome scaffold33590 INFO [2014-03-08 06:26:27,719] [Preprocessor.java:241] [main] Processing chromosome scaffold33594 Processing chromosome scaffold33594 INFO [2014-03-08 06:26:27,751] [Preprocessor.java:241] [main] Processing chromosome scaffold336 Processing chromosome scaffold336 INFO [2014-03-08 06:26:27,841] [Preprocessor.java:241] [main] Processing chromosome scaffold33610 Processing chromosome scaffold33610 INFO [2014-03-08 06:26:27,847] [Preprocessor.java:241] [main] Processing chromosome scaffold33618 Processing chromosome scaffold33618 INFO [2014-03-08 06:26:27,868] [Preprocessor.java:241] [main] Processing chromosome scaffold33628 Processing chromosome scaffold33628 INFO [2014-03-08 06:26:27,873] [Preprocessor.java:241] [main] Processing chromosome scaffold33638 Processing chromosome scaffold33638 INFO [2014-03-08 06:26:27,904] [Preprocessor.java:241] [main] Processing chromosome scaffold33640 Processing chromosome scaffold33640 INFO [2014-03-08 06:26:27,911] [Preprocessor.java:241] [main] Processing chromosome scaffold33656 Processing chromosome scaffold33656 INFO [2014-03-08 06:26:27,926] [Preprocessor.java:241] [main] Processing chromosome scaffold33684 Processing chromosome scaffold33684 INFO [2014-03-08 06:26:27,950] [Preprocessor.java:241] [main] Processing chromosome scaffold337 Processing chromosome scaffold337 INFO [2014-03-08 06:26:28,115] [Preprocessor.java:241] [main] Processing chromosome scaffold33704 Processing chromosome scaffold33704 INFO [2014-03-08 06:26:28,130] [Preprocessor.java:241] [main] Processing chromosome scaffold33706 Processing chromosome scaffold33706 INFO [2014-03-08 06:26:28,134] [Preprocessor.java:241] [main] Processing chromosome scaffold33724 Processing chromosome scaffold33724 INFO [2014-03-08 06:26:28,148] [Preprocessor.java:241] [main] Processing chromosome scaffold33732 Processing chromosome scaffold33732 INFO [2014-03-08 06:26:28,193] [Preprocessor.java:241] [main] Processing chromosome scaffold33736 Processing chromosome scaffold33736 INFO [2014-03-08 06:26:28,199] [Preprocessor.java:241] [main] Processing chromosome scaffold33742 Processing chromosome scaffold33742 INFO [2014-03-08 06:26:28,234] [Preprocessor.java:241] [main] Processing chromosome scaffold33754 Processing chromosome scaffold33754 INFO [2014-03-08 06:26:28,241] [Preprocessor.java:241] [main] Processing chromosome scaffold338 Processing chromosome scaffold338 INFO [2014-03-08 06:26:28,279] [Preprocessor.java:241] [main] Processing chromosome scaffold33806 Processing chromosome scaffold33806 INFO [2014-03-08 06:26:28,300] [Preprocessor.java:241] [main] Processing chromosome scaffold33820 Processing chromosome scaffold33820 INFO [2014-03-08 06:26:28,303] [Preprocessor.java:241] [main] Processing chromosome scaffold33822 Processing chromosome scaffold33822 INFO [2014-03-08 06:26:28,319] [Preprocessor.java:241] [main] Processing chromosome scaffold33832 Processing chromosome scaffold33832 INFO [2014-03-08 06:26:28,337] [Preprocessor.java:241] [main] Processing chromosome scaffold33840 Processing chromosome scaffold33840 INFO [2014-03-08 06:26:28,355] [Preprocessor.java:241] [main] Processing chromosome scaffold33842 Processing chromosome scaffold33842 INFO [2014-03-08 06:26:28,367] [Preprocessor.java:241] [main] Processing chromosome scaffold33846 Processing chromosome scaffold33846 INFO [2014-03-08 06:26:28,382] [Preprocessor.java:241] [main] Processing chromosome scaffold33848 Processing chromosome scaffold33848 INFO [2014-03-08 06:26:28,392] [Preprocessor.java:241] [main] Processing chromosome scaffold33850 Processing chromosome scaffold33850 INFO [2014-03-08 06:26:28,397] [Preprocessor.java:241] [main] Processing chromosome scaffold33876 Processing chromosome scaffold33876 INFO [2014-03-08 06:26:28,401] [Preprocessor.java:241] [main] Processing chromosome scaffold339 Processing chromosome scaffold339 INFO [2014-03-08 06:26:28,434] [Preprocessor.java:241] [main] Processing chromosome scaffold33902 Processing chromosome scaffold33902 INFO [2014-03-08 06:26:28,454] [Preprocessor.java:241] [main] Processing chromosome scaffold33904 Processing chromosome scaffold33904 INFO [2014-03-08 06:26:28,476] [Preprocessor.java:241] [main] Processing chromosome scaffold33910 Processing chromosome scaffold33910 INFO [2014-03-08 06:26:28,503] [Preprocessor.java:241] [main] Processing chromosome scaffold33912 Processing chromosome scaffold33912 INFO [2014-03-08 06:26:28,508] [Preprocessor.java:241] [main] Processing chromosome scaffold33922 Processing chromosome scaffold33922 INFO [2014-03-08 06:26:28,513] [Preprocessor.java:241] [main] Processing chromosome scaffold33924 Processing chromosome scaffold33924 INFO [2014-03-08 06:26:28,533] [Preprocessor.java:241] [main] Processing chromosome scaffold33934 Processing chromosome scaffold33934 INFO [2014-03-08 06:26:28,543] [Preprocessor.java:241] [main] Processing chromosome scaffold33944 Processing chromosome scaffold33944 INFO [2014-03-08 06:26:28,571] [Preprocessor.java:241] [main] Processing chromosome scaffold33958 Processing chromosome scaffold33958 INFO [2014-03-08 06:26:28,604] [Preprocessor.java:241] [main] Processing chromosome scaffold33960 Processing chromosome scaffold33960 INFO [2014-03-08 06:26:28,641] [Preprocessor.java:241] [main] Processing chromosome scaffold33980 Processing chromosome scaffold33980 INFO [2014-03-08 06:26:28,680] [Preprocessor.java:241] [main] Processing chromosome scaffold33992 Processing chromosome scaffold33992 INFO [2014-03-08 06:26:28,711] [Preprocessor.java:241] [main] Processing chromosome scaffold34 Processing chromosome scaffold34 .INFO [2014-03-08 06:26:28,807] [Preprocessor.java:241] [main] Processing chromosome scaffold340 Processing chromosome scaffold340 INFO [2014-03-08 06:26:28,901] [Preprocessor.java:241] [main] Processing chromosome scaffold34000 Processing chromosome scaffold34000 INFO [2014-03-08 06:26:28,909] [Preprocessor.java:241] [main] Processing chromosome scaffold34008 Processing chromosome scaffold34008 INFO [2014-03-08 06:26:28,918] [Preprocessor.java:241] [main] Processing chromosome scaffold34016 Processing chromosome scaffold34016 INFO [2014-03-08 06:26:28,928] [Preprocessor.java:241] [main] Processing chromosome scaffold34018 Processing chromosome scaffold34018 INFO [2014-03-08 06:26:28,966] [Preprocessor.java:241] [main] Processing chromosome scaffold34020 Processing chromosome scaffold34020 INFO [2014-03-08 06:26:28,969] [Preprocessor.java:241] [main] Processing chromosome scaffold34026 Processing chromosome scaffold34026 INFO [2014-03-08 06:26:29,003] [Preprocessor.java:241] [main] Processing chromosome scaffold34032 Processing chromosome scaffold34032 INFO [2014-03-08 06:26:29,034] [Preprocessor.java:241] [main] Processing chromosome scaffold34048 Processing chromosome scaffold34048 INFO [2014-03-08 06:26:29,060] [Preprocessor.java:241] [main] Processing chromosome scaffold34052 Processing chromosome scaffold34052 INFO [2014-03-08 06:26:29,080] [Preprocessor.java:241] [main] Processing chromosome scaffold34058 Processing chromosome scaffold34058 INFO [2014-03-08 06:26:29,125] [Preprocessor.java:241] [main] Processing chromosome scaffold34064 Processing chromosome scaffold34064 INFO [2014-03-08 06:26:29,135] [Preprocessor.java:241] [main] Processing chromosome scaffold34084 Processing chromosome scaffold34084 INFO [2014-03-08 06:26:29,153] [Preprocessor.java:241] [main] Processing chromosome scaffold34088 Processing chromosome scaffold34088 INFO [2014-03-08 06:26:29,195] [Preprocessor.java:241] [main] Processing chromosome scaffold34098 Processing chromosome scaffold34098 INFO [2014-03-08 06:26:29,229] [Preprocessor.java:241] [main] Processing chromosome scaffold341 Processing chromosome scaffold341 INFO [2014-03-08 06:26:29,296] [Preprocessor.java:241] [main] Processing chromosome scaffold34106 Processing chromosome scaffold34106 INFO [2014-03-08 06:26:29,314] [Preprocessor.java:241] [main] Processing chromosome scaffold34124 Processing chromosome scaffold34124 INFO [2014-03-08 06:26:29,322] [Preprocessor.java:241] [main] Processing chromosome scaffold34144 Processing chromosome scaffold34144 INFO [2014-03-08 06:26:29,330] [Preprocessor.java:241] [main] Processing chromosome scaffold34168 Processing chromosome scaffold34168 INFO [2014-03-08 06:26:29,334] [Preprocessor.java:241] [main] Processing chromosome scaffold34182 Processing chromosome scaffold34182 INFO [2014-03-08 06:26:29,352] [Preprocessor.java:241] [main] Processing chromosome scaffold34192 Processing chromosome scaffold34192 INFO [2014-03-08 06:26:29,373] [Preprocessor.java:241] [main] Processing chromosome scaffold342 Processing chromosome scaffold342 INFO [2014-03-08 06:26:29,392] [Preprocessor.java:241] [main] Processing chromosome scaffold34202 Processing chromosome scaffold34202 INFO [2014-03-08 06:26:29,433] [Preprocessor.java:241] [main] Processing chromosome scaffold34222 Processing chromosome scaffold34222 INFO [2014-03-08 06:26:29,440] [Preprocessor.java:241] [main] Processing chromosome scaffold34224 Processing chromosome scaffold34224 INFO [2014-03-08 06:26:29,448] [Preprocessor.java:241] [main] Processing chromosome scaffold34236 Processing chromosome scaffold34236 INFO [2014-03-08 06:26:29,456] [Preprocessor.java:241] [main] Processing chromosome scaffold34238 Processing chromosome scaffold34238 INFO [2014-03-08 06:26:29,503] [Preprocessor.java:241] [main] Processing chromosome scaffold34244 Processing chromosome scaffold34244 INFO [2014-03-08 06:26:29,544] [Preprocessor.java:241] [main] Processing chromosome scaffold34266 Processing chromosome scaffold34266 INFO [2014-03-08 06:26:29,578] [Preprocessor.java:241] [main] Processing chromosome scaffold34278 Processing chromosome scaffold34278 INFO [2014-03-08 06:26:29,597] [Preprocessor.java:241] [main] Processing chromosome scaffold34282 Processing chromosome scaffold34282 INFO [2014-03-08 06:26:29,616] [Preprocessor.java:241] [main] Processing chromosome scaffold34292 Processing chromosome scaffold34292 INFO [2014-03-08 06:26:29,631] [Preprocessor.java:241] [main] Processing chromosome scaffold34298 Processing chromosome scaffold34298 INFO [2014-03-08 06:26:29,654] [Preprocessor.java:241] [main] Processing chromosome scaffold343 Processing chromosome scaffold343 INFO [2014-03-08 06:26:29,765] [Preprocessor.java:241] [main] Processing chromosome scaffold34302 Processing chromosome scaffold34302 INFO [2014-03-08 06:26:29,775] [Preprocessor.java:241] [main] Processing chromosome scaffold34308 Processing chromosome scaffold34308 INFO [2014-03-08 06:26:29,790] [Preprocessor.java:241] [main] Processing chromosome scaffold34314 Processing chromosome scaffold34314 INFO [2014-03-08 06:26:29,806] [Preprocessor.java:241] [main] Processing chromosome scaffold34348 Processing chromosome scaffold34348 INFO [2014-03-08 06:26:29,816] [Preprocessor.java:241] [main] Processing chromosome scaffold34350 Processing chromosome scaffold34350 INFO [2014-03-08 06:26:29,820] [Preprocessor.java:241] [main] Processing chromosome scaffold34356 Processing chromosome scaffold34356 INFO [2014-03-08 06:26:29,828] [Preprocessor.java:241] [main] Processing chromosome scaffold34364 Processing chromosome scaffold34364 INFO [2014-03-08 06:26:29,860] [Preprocessor.java:241] [main] Processing chromosome scaffold34366 Processing chromosome scaffold34366 INFO [2014-03-08 06:26:29,899] [Preprocessor.java:241] [main] Processing chromosome scaffold34380 Processing chromosome scaffold34380 INFO [2014-03-08 06:26:29,908] [Preprocessor.java:241] [main] Processing chromosome scaffold34388 Processing chromosome scaffold34388 INFO [2014-03-08 06:26:29,912] [Preprocessor.java:241] [main] Processing chromosome scaffold344 Processing chromosome scaffold344 INFO [2014-03-08 06:26:29,929] [Preprocessor.java:241] [main] Processing chromosome scaffold34420 Processing chromosome scaffold34420 INFO [2014-03-08 06:26:29,940] [Preprocessor.java:241] [main] Processing chromosome scaffold34438 Processing chromosome scaffold34438 INFO [2014-03-08 06:26:29,948] [Preprocessor.java:241] [main] Processing chromosome scaffold34442 Processing chromosome scaffold34442 INFO [2014-03-08 06:26:29,953] [Preprocessor.java:241] [main] Processing chromosome scaffold34476 Processing chromosome scaffold34476 INFO [2014-03-08 06:26:30,000] [Preprocessor.java:241] [main] Processing chromosome scaffold34510 Processing chromosome scaffold34510 INFO [2014-03-08 06:26:30,016] [Preprocessor.java:241] [main] Processing chromosome scaffold34528 Processing chromosome scaffold34528 INFO [2014-03-08 06:26:30,018] [Preprocessor.java:241] [main] Processing chromosome scaffold34534 Processing chromosome scaffold34534 INFO [2014-03-08 06:26:30,028] [Preprocessor.java:241] [main] Processing chromosome scaffold34542 Processing chromosome scaffold34542 INFO [2014-03-08 06:26:30,036] [Preprocessor.java:241] [main] Processing chromosome scaffold34544 Processing chromosome scaffold34544 INFO [2014-03-08 06:26:30,071] [Preprocessor.java:241] [main] Processing chromosome scaffold34548 Processing chromosome scaffold34548 INFO [2014-03-08 06:26:30,081] [Preprocessor.java:241] [main] Processing chromosome scaffold34572 Processing chromosome scaffold34572 INFO [2014-03-08 06:26:30,110] [Preprocessor.java:241] [main] Processing chromosome scaffold34574 Processing chromosome scaffold34574 INFO [2014-03-08 06:26:30,113] [Preprocessor.java:241] [main] Processing chromosome scaffold34580 Processing chromosome scaffold34580 INFO [2014-03-08 06:26:30,134] [Preprocessor.java:241] [main] Processing chromosome scaffold34582 Processing chromosome scaffold34582 INFO [2014-03-08 06:26:30,149] [Preprocessor.java:241] [main] Processing chromosome scaffold34594 Processing chromosome scaffold34594 INFO [2014-03-08 06:26:30,184] [Preprocessor.java:241] [main] Processing chromosome scaffold34596 Processing chromosome scaffold34596 INFO [2014-03-08 06:26:30,202] [Preprocessor.java:241] [main] Processing chromosome scaffold34610 Processing chromosome scaffold34610 INFO [2014-03-08 06:26:30,205] [Preprocessor.java:241] [main] Processing chromosome scaffold34652 Processing chromosome scaffold34652 INFO [2014-03-08 06:26:30,231] [Preprocessor.java:241] [main] Processing chromosome scaffold34682 Processing chromosome scaffold34682 INFO [2014-03-08 06:26:30,258] [Preprocessor.java:241] [main] Processing chromosome scaffold34684 Processing chromosome scaffold34684 INFO [2014-03-08 06:26:30,266] [Preprocessor.java:241] [main] Processing chromosome scaffold34694 Processing chromosome scaffold34694 INFO [2014-03-08 06:26:30,288] [Preprocessor.java:241] [main] Processing chromosome scaffold34696 Processing chromosome scaffold34696 INFO [2014-03-08 06:26:30,323] [Preprocessor.java:241] [main] Processing chromosome scaffold347 Processing chromosome scaffold347 INFO [2014-03-08 06:26:30,446] [Preprocessor.java:241] [main] Processing chromosome scaffold34700 Processing chromosome scaffold34700 INFO [2014-03-08 06:26:30,469] [Preprocessor.java:241] [main] Processing chromosome scaffold34710 Processing chromosome scaffold34710 INFO [2014-03-08 06:26:30,497] [Preprocessor.java:241] [main] Processing chromosome scaffold34714 Processing chromosome scaffold34714 INFO [2014-03-08 06:26:30,537] [Preprocessor.java:241] [main] Processing chromosome scaffold34724 Processing chromosome scaffold34724 INFO [2014-03-08 06:26:30,547] [Preprocessor.java:241] [main] Processing chromosome scaffold34732 Processing chromosome scaffold34732 INFO [2014-03-08 06:26:30,586] [Preprocessor.java:241] [main] Processing chromosome scaffold34738 Processing chromosome scaffold34738 INFO [2014-03-08 06:26:30,608] [Preprocessor.java:241] [main] Processing chromosome scaffold34740 Processing chromosome scaffold34740 INFO [2014-03-08 06:26:30,632] [Preprocessor.java:241] [main] Processing chromosome scaffold34742 Processing chromosome scaffold34742 INFO [2014-03-08 06:26:30,657] [Preprocessor.java:241] [main] Processing chromosome scaffold34756 Processing chromosome scaffold34756 INFO [2014-03-08 06:26:30,700] [Preprocessor.java:241] [main] Processing chromosome scaffold34780 Processing chromosome scaffold34780 INFO [2014-03-08 06:26:30,724] [Preprocessor.java:241] [main] Processing chromosome scaffold34794 Processing chromosome scaffold34794 INFO [2014-03-08 06:26:30,755] [Preprocessor.java:241] [main] Processing chromosome scaffold348 Processing chromosome scaffold348 INFO [2014-03-08 06:26:30,949] [Preprocessor.java:241] [main] Processing chromosome scaffold34832 Processing chromosome scaffold34832 INFO [2014-03-08 06:26:30,972] [Preprocessor.java:241] [main] Processing chromosome scaffold34850 Processing chromosome scaffold34850 INFO [2014-03-08 06:26:30,994] [Preprocessor.java:241] [main] Processing chromosome scaffold34860 Processing chromosome scaffold34860 INFO [2014-03-08 06:26:31,050] [Preprocessor.java:241] [main] Processing chromosome scaffold34868 Processing chromosome scaffold34868 INFO [2014-03-08 06:26:31,063] [Preprocessor.java:241] [main] Processing chromosome scaffold34872 Processing chromosome scaffold34872 INFO [2014-03-08 06:26:31,074] [Preprocessor.java:241] [main] Processing chromosome scaffold34882 Processing chromosome scaffold34882 INFO [2014-03-08 06:26:31,076] [Preprocessor.java:241] [main] Processing chromosome scaffold34888 Processing chromosome scaffold34888 INFO [2014-03-08 06:26:31,086] [Preprocessor.java:241] [main] Processing chromosome scaffold34894 Processing chromosome scaffold34894 INFO [2014-03-08 06:26:31,099] [Preprocessor.java:241] [main] Processing chromosome scaffold34898 Processing chromosome scaffold34898 INFO [2014-03-08 06:26:31,128] [Preprocessor.java:241] [main] Processing chromosome scaffold34910 Processing chromosome scaffold34910 INFO [2014-03-08 06:26:31,141] [Preprocessor.java:241] [main] Processing chromosome scaffold34932 Processing chromosome scaffold34932 INFO [2014-03-08 06:26:31,195] [Preprocessor.java:241] [main] Processing chromosome scaffold34942 Processing chromosome scaffold34942 INFO [2014-03-08 06:26:31,212] [Preprocessor.java:241] [main] Processing chromosome scaffold34952 Processing chromosome scaffold34952 INFO [2014-03-08 06:26:31,248] [Preprocessor.java:241] [main] Processing chromosome scaffold34956 Processing chromosome scaffold34956 INFO [2014-03-08 06:26:31,263] [Preprocessor.java:241] [main] Processing chromosome scaffold34958 Processing chromosome scaffold34958 INFO [2014-03-08 06:26:31,302] [Preprocessor.java:241] [main] Processing chromosome scaffold34968 Processing chromosome scaffold34968 INFO [2014-03-08 06:26:31,307] [Preprocessor.java:241] [main] Processing chromosome scaffold34972 Processing chromosome scaffold34972 INFO [2014-03-08 06:26:31,342] [Preprocessor.java:241] [main] Processing chromosome scaffold34974 Processing chromosome scaffold34974 INFO [2014-03-08 06:26:31,362] [Preprocessor.java:241] [main] Processing chromosome scaffold34980 Processing chromosome scaffold34980 INFO [2014-03-08 06:26:31,364] [Preprocessor.java:241] [main] Processing chromosome scaffold34986 Processing chromosome scaffold34986 INFO [2014-03-08 06:26:31,368] [Preprocessor.java:241] [main] Processing chromosome scaffold34994 Processing chromosome scaffold34994 INFO [2014-03-08 06:26:31,378] [Preprocessor.java:241] [main] Processing chromosome scaffold34998 Processing chromosome scaffold34998 INFO [2014-03-08 06:26:31,386] [Preprocessor.java:241] [main] Processing chromosome scaffold35 Processing chromosome scaffold35 INFO [2014-03-08 06:26:31,405] [Preprocessor.java:241] [main] Processing chromosome scaffold350 Processing chromosome scaffold350 INFO [2014-03-08 06:26:31,413] [Preprocessor.java:241] [main] Processing chromosome scaffold35004 Processing chromosome scaffold35004 INFO [2014-03-08 06:26:31,422] [Preprocessor.java:241] [main] Processing chromosome scaffold35014 Processing chromosome scaffold35014 INFO [2014-03-08 06:26:31,456] [Preprocessor.java:241] [main] Processing chromosome scaffold35030 Processing chromosome scaffold35030 INFO [2014-03-08 06:26:31,479] [Preprocessor.java:241] [main] Processing chromosome scaffold35034 Processing chromosome scaffold35034 INFO [2014-03-08 06:26:31,494] [Preprocessor.java:241] [main] Processing chromosome scaffold35036 Processing chromosome scaffold35036 INFO [2014-03-08 06:26:31,521] [Preprocessor.java:241] [main] Processing chromosome scaffold35038 Processing chromosome scaffold35038 INFO [2014-03-08 06:26:31,532] [Preprocessor.java:241] [main] Processing chromosome scaffold35066 Processing chromosome scaffold35066 INFO [2014-03-08 06:26:31,546] [Preprocessor.java:241] [main] Processing chromosome scaffold35070 Processing chromosome scaffold35070 INFO [2014-03-08 06:26:31,555] [Preprocessor.java:241] [main] Processing chromosome scaffold35072 Processing chromosome scaffold35072 INFO [2014-03-08 06:26:31,566] [Preprocessor.java:241] [main] Processing chromosome scaffold35084 Processing chromosome scaffold35084 INFO [2014-03-08 06:26:31,571] [Preprocessor.java:241] [main] Processing chromosome scaffold35094 Processing chromosome scaffold35094 INFO [2014-03-08 06:26:31,576] [Preprocessor.java:241] [main] Processing chromosome scaffold351 Processing chromosome scaffold351 INFO [2014-03-08 06:26:31,714] [Preprocessor.java:241] [main] Processing chromosome scaffold35102 Processing chromosome scaffold35102 INFO [2014-03-08 06:26:31,735] [Preprocessor.java:241] [main] Processing chromosome scaffold35104 Processing chromosome scaffold35104 INFO [2014-03-08 06:26:31,745] [Preprocessor.java:241] [main] Processing chromosome scaffold35108 Processing chromosome scaffold35108 INFO [2014-03-08 06:26:31,775] [Preprocessor.java:241] [main] Processing chromosome scaffold35110 Processing chromosome scaffold35110 INFO [2014-03-08 06:26:31,781] [Preprocessor.java:241] [main] Processing chromosome scaffold35124 Processing chromosome scaffold35124 INFO [2014-03-08 06:26:31,798] [Preprocessor.java:241] [main] Processing chromosome scaffold35136 Processing chromosome scaffold35136 INFO [2014-03-08 06:26:31,858] [Preprocessor.java:241] [main] Processing chromosome scaffold35138 Processing chromosome scaffold35138 INFO [2014-03-08 06:26:31,930] [Preprocessor.java:241] [main] Processing chromosome scaffold35150 Processing chromosome scaffold35150 INFO [2014-03-08 06:26:31,935] [Preprocessor.java:241] [main] Processing chromosome scaffold35152 Processing chromosome scaffold35152 INFO [2014-03-08 06:26:31,947] [Preprocessor.java:241] [main] Processing chromosome scaffold35154 Processing chromosome scaffold35154 INFO [2014-03-08 06:26:31,958] [Preprocessor.java:241] [main] Processing chromosome scaffold35162 Processing chromosome scaffold35162 INFO [2014-03-08 06:26:31,982] [Preprocessor.java:241] [main] Processing chromosome scaffold35180 Processing chromosome scaffold35180 INFO [2014-03-08 06:26:31,994] [Preprocessor.java:241] [main] Processing chromosome scaffold35194 Processing chromosome scaffold35194 INFO [2014-03-08 06:26:32,005] [Preprocessor.java:241] [main] Processing chromosome scaffold35198 Processing chromosome scaffold35198 INFO [2014-03-08 06:26:32,007] [Preprocessor.java:241] [main] Processing chromosome scaffold352 Processing chromosome scaffold352 INFO [2014-03-08 06:26:32,046] [Preprocessor.java:241] [main] Processing chromosome scaffold35200 Processing chromosome scaffold35200 INFO [2014-03-08 06:26:32,056] [Preprocessor.java:241] [main] Processing chromosome scaffold35230 Processing chromosome scaffold35230 INFO [2014-03-08 06:26:32,076] [Preprocessor.java:241] [main] Processing chromosome scaffold35234 Processing chromosome scaffold35234 INFO [2014-03-08 06:26:32,097] [Preprocessor.java:241] [main] Processing chromosome scaffold35236 Processing chromosome scaffold35236 INFO [2014-03-08 06:26:32,136] [Preprocessor.java:241] [main] Processing chromosome scaffold35238 Processing chromosome scaffold35238 INFO [2014-03-08 06:26:32,154] [Preprocessor.java:241] [main] Processing chromosome scaffold35240 Processing chromosome scaffold35240 INFO [2014-03-08 06:26:32,164] [Preprocessor.java:241] [main] Processing chromosome scaffold35250 Processing chromosome scaffold35250 INFO [2014-03-08 06:26:32,178] [Preprocessor.java:241] [main] Processing chromosome scaffold35252 Processing chromosome scaffold35252 INFO [2014-03-08 06:26:32,185] [Preprocessor.java:241] [main] Processing chromosome scaffold35254 Processing chromosome scaffold35254 INFO [2014-03-08 06:26:32,190] [Preprocessor.java:241] [main] Processing chromosome scaffold35266 Processing chromosome scaffold35266 INFO [2014-03-08 06:26:32,206] [Preprocessor.java:241] [main] Processing chromosome scaffold35268 Processing chromosome scaffold35268 INFO [2014-03-08 06:26:32,221] [Preprocessor.java:241] [main] Processing chromosome scaffold35270 Processing chromosome scaffold35270 INFO [2014-03-08 06:26:32,225] [Preprocessor.java:241] [main] Processing chromosome scaffold35272 Processing chromosome scaffold35272 INFO [2014-03-08 06:26:32,252] [Preprocessor.java:241] [main] Processing chromosome scaffold35276 Processing chromosome scaffold35276 INFO [2014-03-08 06:26:32,269] [Preprocessor.java:241] [main] Processing chromosome scaffold35286 Processing chromosome scaffold35286 INFO [2014-03-08 06:26:32,296] [Preprocessor.java:241] [main] Processing chromosome scaffold35296 Processing chromosome scaffold35296 INFO [2014-03-08 06:26:32,322] [Preprocessor.java:241] [main] Processing chromosome scaffold353 Processing chromosome scaffold353 INFO [2014-03-08 06:26:32,334] [Preprocessor.java:241] [main] Processing chromosome scaffold35306 Processing chromosome scaffold35306 INFO [2014-03-08 06:26:32,359] [Preprocessor.java:241] [main] Processing chromosome scaffold35310 Processing chromosome scaffold35310 INFO [2014-03-08 06:26:32,364] [Preprocessor.java:241] [main] Processing chromosome scaffold35330 Processing chromosome scaffold35330 INFO [2014-03-08 06:26:32,379] [Preprocessor.java:241] [main] Processing chromosome scaffold35332 Processing chromosome scaffold35332 INFO [2014-03-08 06:26:32,427] [Preprocessor.java:241] [main] Processing chromosome scaffold35334 Processing chromosome scaffold35334 INFO [2014-03-08 06:26:32,455] [Preprocessor.java:241] [main] Processing chromosome scaffold35336 Processing chromosome scaffold35336 INFO [2014-03-08 06:26:32,480] [Preprocessor.java:241] [main] Processing chromosome scaffold35344 Processing chromosome scaffold35344 INFO [2014-03-08 06:26:32,487] [Preprocessor.java:241] [main] Processing chromosome scaffold35346 Processing chromosome scaffold35346 INFO [2014-03-08 06:26:32,493] [Preprocessor.java:241] [main] Processing chromosome scaffold35348 Processing chromosome scaffold35348 INFO [2014-03-08 06:26:32,501] [Preprocessor.java:241] [main] Processing chromosome scaffold35358 Processing chromosome scaffold35358 INFO [2014-03-08 06:26:32,524] [Preprocessor.java:241] [main] Processing chromosome scaffold35366 Processing chromosome scaffold35366 INFO [2014-03-08 06:26:32,538] [Preprocessor.java:241] [main] Processing chromosome scaffold35380 Processing chromosome scaffold35380 INFO [2014-03-08 06:26:32,550] [Preprocessor.java:241] [main] Processing chromosome scaffold35388 Processing chromosome scaffold35388 INFO [2014-03-08 06:26:32,562] [Preprocessor.java:241] [main] Processing chromosome scaffold35392 Processing chromosome scaffold35392 INFO [2014-03-08 06:26:32,582] [Preprocessor.java:241] [main] Processing chromosome scaffold35396 Processing chromosome scaffold35396 INFO [2014-03-08 06:26:32,612] [Preprocessor.java:241] [main] Processing chromosome scaffold354 Processing chromosome scaffold354 INFO [2014-03-08 06:26:32,777] [Preprocessor.java:241] [main] Processing chromosome scaffold35406 Processing chromosome scaffold35406 INFO [2014-03-08 06:26:32,802] [Preprocessor.java:241] [main] Processing chromosome scaffold35410 Processing chromosome scaffold35410 INFO [2014-03-08 06:26:32,833] [Preprocessor.java:241] [main] Processing chromosome scaffold35416 Processing chromosome scaffold35416 INFO [2014-03-08 06:26:32,836] [Preprocessor.java:241] [main] Processing chromosome scaffold35430 Processing chromosome scaffold35430 INFO [2014-03-08 06:26:32,846] [Preprocessor.java:241] [main] Processing chromosome scaffold35432 Processing chromosome scaffold35432 INFO [2014-03-08 06:26:32,863] [Preprocessor.java:241] [main] Processing chromosome scaffold35436 Processing chromosome scaffold35436 INFO [2014-03-08 06:26:32,886] [Preprocessor.java:241] [main] Processing chromosome scaffold35438 Processing chromosome scaffold35438 INFO [2014-03-08 06:26:32,891] [Preprocessor.java:241] [main] Processing chromosome scaffold35444 Processing chromosome scaffold35444 INFO [2014-03-08 06:26:32,901] [Preprocessor.java:241] [main] Processing chromosome scaffold35446 Processing chromosome scaffold35446 INFO [2014-03-08 06:26:32,919] [Preprocessor.java:241] [main] Processing chromosome scaffold35466 Processing chromosome scaffold35466 INFO [2014-03-08 06:26:32,949] [Preprocessor.java:241] [main] Processing chromosome scaffold35470 Processing chromosome scaffold35470 INFO [2014-03-08 06:26:32,966] [Preprocessor.java:241] [main] Processing chromosome scaffold35472 Processing chromosome scaffold35472 INFO [2014-03-08 06:26:33,010] [Preprocessor.java:241] [main] Processing chromosome scaffold35476 Processing chromosome scaffold35476 INFO [2014-03-08 06:26:33,024] [Preprocessor.java:241] [main] Processing chromosome scaffold35478 Processing chromosome scaffold35478 INFO [2014-03-08 06:26:33,049] [Preprocessor.java:241] [main] Processing chromosome scaffold35480 Processing chromosome scaffold35480 INFO [2014-03-08 06:26:33,066] [Preprocessor.java:241] [main] Processing chromosome scaffold35486 Processing chromosome scaffold35486 INFO [2014-03-08 06:26:33,108] [Preprocessor.java:241] [main] Processing chromosome scaffold35490 Processing chromosome scaffold35490 INFO [2014-03-08 06:26:33,128] [Preprocessor.java:241] [main] Processing chromosome scaffold35508 Processing chromosome scaffold35508 INFO [2014-03-08 06:26:33,139] [Preprocessor.java:241] [main] Processing chromosome scaffold35518 Processing chromosome scaffold35518 INFO [2014-03-08 06:26:33,166] [Preprocessor.java:241] [main] Processing chromosome scaffold35530 Processing chromosome scaffold35530 INFO [2014-03-08 06:26:33,189] [Preprocessor.java:241] [main] Processing chromosome scaffold35536 Processing chromosome scaffold35536 INFO [2014-03-08 06:26:33,225] [Preprocessor.java:241] [main] Processing chromosome scaffold35538 Processing chromosome scaffold35538 INFO [2014-03-08 06:26:33,262] [Preprocessor.java:241] [main] Processing chromosome scaffold35540 Processing chromosome scaffold35540 INFO [2014-03-08 06:26:33,267] [Preprocessor.java:241] [main] Processing chromosome scaffold35558 Processing chromosome scaffold35558 INFO [2014-03-08 06:26:33,284] [Preprocessor.java:241] [main] Processing chromosome scaffold35568 Processing chromosome scaffold35568 INFO [2014-03-08 06:26:33,291] [Preprocessor.java:241] [main] Processing chromosome scaffold35574 Processing chromosome scaffold35574 INFO [2014-03-08 06:26:33,296] [Preprocessor.java:241] [main] Processing chromosome scaffold35586 Processing chromosome scaffold35586 INFO [2014-03-08 06:26:33,330] [Preprocessor.java:241] [main] Processing chromosome scaffold35598 Processing chromosome scaffold35598 INFO [2014-03-08 06:26:33,354] [Preprocessor.java:241] [main] Processing chromosome scaffold35616 Processing chromosome scaffold35616 INFO [2014-03-08 06:26:33,381] [Preprocessor.java:241] [main] Processing chromosome scaffold35636 Processing chromosome scaffold35636 INFO [2014-03-08 06:26:33,391] [Preprocessor.java:241] [main] Processing chromosome scaffold35640 Processing chromosome scaffold35640 INFO [2014-03-08 06:26:33,418] [Preprocessor.java:241] [main] Processing chromosome scaffold35654 Processing chromosome scaffold35654 INFO [2014-03-08 06:26:33,428] [Preprocessor.java:241] [main] Processing chromosome scaffold35660 Processing chromosome scaffold35660 INFO [2014-03-08 06:26:33,430] [Preprocessor.java:241] [main] Processing chromosome scaffold35680 Processing chromosome scaffold35680 INFO [2014-03-08 06:26:33,468] [Preprocessor.java:241] [main] Processing chromosome scaffold35684 Processing chromosome scaffold35684 INFO [2014-03-08 06:26:33,482] [Preprocessor.java:241] [main] Processing chromosome scaffold35694 Processing chromosome scaffold35694 INFO [2014-03-08 06:26:33,489] [Preprocessor.java:241] [main] Processing chromosome scaffold357 Processing chromosome scaffold357 INFO [2014-03-08 06:26:33,506] [Preprocessor.java:241] [main] Processing chromosome scaffold35712 Processing chromosome scaffold35712 INFO [2014-03-08 06:26:33,543] [Preprocessor.java:241] [main] Processing chromosome scaffold35724 Processing chromosome scaffold35724 INFO [2014-03-08 06:26:33,561] [Preprocessor.java:241] [main] Processing chromosome scaffold35726 Processing chromosome scaffold35726 INFO [2014-03-08 06:26:33,579] [Preprocessor.java:241] [main] Processing chromosome scaffold35732 Processing chromosome scaffold35732 INFO [2014-03-08 06:26:33,588] [Preprocessor.java:241] [main] Processing chromosome scaffold35754 Processing chromosome scaffold35754 INFO [2014-03-08 06:26:33,604] [Preprocessor.java:241] [main] Processing chromosome scaffold35772 Processing chromosome scaffold35772 INFO [2014-03-08 06:26:33,612] [Preprocessor.java:241] [main] Processing chromosome scaffold35784 Processing chromosome scaffold35784 INFO [2014-03-08 06:26:33,631] [Preprocessor.java:241] [main] Processing chromosome scaffold35792 Processing chromosome scaffold35792 INFO [2014-03-08 06:26:33,639] [Preprocessor.java:241] [main] Processing chromosome scaffold35796 Processing chromosome scaffold35796 INFO [2014-03-08 06:26:33,644] [Preprocessor.java:241] [main] Processing chromosome scaffold358 Processing chromosome scaffold358 INFO [2014-03-08 06:26:33,710] [Preprocessor.java:241] [main] Processing chromosome scaffold35806 Processing chromosome scaffold35806 INFO [2014-03-08 06:26:33,715] [Preprocessor.java:241] [main] Processing chromosome scaffold35808 Processing chromosome scaffold35808 INFO [2014-03-08 06:26:33,725] [Preprocessor.java:241] [main] Processing chromosome scaffold35814 Processing chromosome scaffold35814 INFO [2014-03-08 06:26:33,739] [Preprocessor.java:241] [main] Processing chromosome scaffold35822 Processing chromosome scaffold35822 INFO [2014-03-08 06:26:33,790] [Preprocessor.java:241] [main] Processing chromosome scaffold35836 Processing chromosome scaffold35836 INFO [2014-03-08 06:26:33,829] [Preprocessor.java:241] [main] Processing chromosome scaffold35854 Processing chromosome scaffold35854 INFO [2014-03-08 06:26:33,860] [Preprocessor.java:241] [main] Processing chromosome scaffold35860 Processing chromosome scaffold35860 INFO [2014-03-08 06:26:33,871] [Preprocessor.java:241] [main] Processing chromosome scaffold35866 Processing chromosome scaffold35866 INFO [2014-03-08 06:26:33,896] [Preprocessor.java:241] [main] Processing chromosome scaffold35870 Processing chromosome scaffold35870 INFO [2014-03-08 06:26:33,919] [Preprocessor.java:241] [main] Processing chromosome scaffold35874 Processing chromosome scaffold35874 INFO [2014-03-08 06:26:33,926] [Preprocessor.java:241] [main] Processing chromosome scaffold35884 Processing chromosome scaffold35884 INFO [2014-03-08 06:26:33,962] [Preprocessor.java:241] [main] Processing chromosome scaffold35890 Processing chromosome scaffold35890 INFO [2014-03-08 06:26:33,999] [Preprocessor.java:241] [main] Processing chromosome scaffold35894 Processing chromosome scaffold35894 INFO [2014-03-08 06:26:34,008] [Preprocessor.java:241] [main] Processing chromosome scaffold35896 Processing chromosome scaffold35896 INFO [2014-03-08 06:26:34,020] [Preprocessor.java:241] [main] Processing chromosome scaffold35898 Processing chromosome scaffold35898 INFO [2014-03-08 06:26:34,028] [Preprocessor.java:241] [main] Processing chromosome scaffold35900 Processing chromosome scaffold35900 INFO [2014-03-08 06:26:34,043] [Preprocessor.java:241] [main] Processing chromosome scaffold35902 Processing chromosome scaffold35902 INFO [2014-03-08 06:26:34,048] [Preprocessor.java:241] [main] Processing chromosome scaffold35910 Processing chromosome scaffold35910 INFO [2014-03-08 06:26:34,061] [Preprocessor.java:241] [main] Processing chromosome scaffold35912 Processing chromosome scaffold35912 INFO [2014-03-08 06:26:34,103] [Preprocessor.java:241] [main] Processing chromosome scaffold35926 Processing chromosome scaffold35926 INFO [2014-03-08 06:26:34,122] [Preprocessor.java:241] [main] Processing chromosome scaffold35928 Processing chromosome scaffold35928 INFO [2014-03-08 06:26:34,136] [Preprocessor.java:241] [main] Processing chromosome scaffold35936 Processing chromosome scaffold35936 INFO [2014-03-08 06:26:34,159] [Preprocessor.java:241] [main] Processing chromosome scaffold35946 Processing chromosome scaffold35946 INFO [2014-03-08 06:26:34,186] [Preprocessor.java:241] [main] Processing chromosome scaffold35950 Processing chromosome scaffold35950 INFO [2014-03-08 06:26:34,190] [Preprocessor.java:241] [main] Processing chromosome scaffold35956 Processing chromosome scaffold35956 INFO [2014-03-08 06:26:34,193] [Preprocessor.java:241] [main] Processing chromosome scaffold35958 Processing chromosome scaffold35958 INFO [2014-03-08 06:26:34,195] [Preprocessor.java:241] [main] Processing chromosome scaffold35960 Processing chromosome scaffold35960 INFO [2014-03-08 06:26:34,220] [Preprocessor.java:241] [main] Processing chromosome scaffold35966 Processing chromosome scaffold35966 INFO [2014-03-08 06:26:34,229] [Preprocessor.java:241] [main] Processing chromosome scaffold35970 Processing chromosome scaffold35970 INFO [2014-03-08 06:26:34,257] [Preprocessor.java:241] [main] Processing chromosome scaffold35974 Processing chromosome scaffold35974 INFO [2014-03-08 06:26:34,269] [Preprocessor.java:241] [main] Processing chromosome scaffold35982 Processing chromosome scaffold35982 INFO [2014-03-08 06:26:34,306] [Preprocessor.java:241] [main] Processing chromosome scaffold35986 Processing chromosome scaffold35986 INFO [2014-03-08 06:26:34,316] [Preprocessor.java:241] [main] Processing chromosome scaffold35988 Processing chromosome scaffold35988 INFO [2014-03-08 06:26:34,333] [Preprocessor.java:241] [main] Processing chromosome scaffold35994 Processing chromosome scaffold35994 INFO [2014-03-08 06:26:34,377] [Preprocessor.java:241] [main] Processing chromosome scaffold36 Processing chromosome scaffold36 INFO [2014-03-08 06:26:34,424] [Preprocessor.java:241] [main] Processing chromosome scaffold36002 Processing chromosome scaffold36002 INFO [2014-03-08 06:26:34,433] [Preprocessor.java:241] [main] Processing chromosome scaffold36004 Processing chromosome scaffold36004 INFO [2014-03-08 06:26:34,439] [Preprocessor.java:241] [main] Processing chromosome scaffold36006 Processing chromosome scaffold36006 INFO [2014-03-08 06:26:34,468] [Preprocessor.java:241] [main] Processing chromosome scaffold36016 Processing chromosome scaffold36016 INFO [2014-03-08 06:26:34,477] [Preprocessor.java:241] [main] Processing chromosome scaffold36020 Processing chromosome scaffold36020 INFO [2014-03-08 06:26:34,483] [Preprocessor.java:241] [main] Processing chromosome scaffold36022 Processing chromosome scaffold36022 INFO [2014-03-08 06:26:34,504] [Preprocessor.java:241] [main] Processing chromosome scaffold36026 Processing chromosome scaffold36026 INFO [2014-03-08 06:26:34,511] [Preprocessor.java:241] [main] Processing chromosome scaffold36034 Processing chromosome scaffold36034 INFO [2014-03-08 06:26:34,541] [Preprocessor.java:241] [main] Processing chromosome scaffold36036 Processing chromosome scaffold36036 INFO [2014-03-08 06:26:34,553] [Preprocessor.java:241] [main] Processing chromosome scaffold36070 Processing chromosome scaffold36070 INFO [2014-03-08 06:26:34,565] [Preprocessor.java:241] [main] Processing chromosome scaffold36088 Processing chromosome scaffold36088 INFO [2014-03-08 06:26:34,575] [Preprocessor.java:241] [main] Processing chromosome scaffold36092 Processing chromosome scaffold36092 INFO [2014-03-08 06:26:34,598] [Preprocessor.java:241] [main] Processing chromosome scaffold36094 Processing chromosome scaffold36094 INFO [2014-03-08 06:26:34,643] [Preprocessor.java:241] [main] Processing chromosome scaffold361 Processing chromosome scaffold361 INFO [2014-03-08 06:26:34,785] [Preprocessor.java:241] [main] Processing chromosome scaffold36102 Processing chromosome scaffold36102 INFO [2014-03-08 06:26:34,798] [Preprocessor.java:241] [main] Processing chromosome scaffold36104 Processing chromosome scaffold36104 INFO [2014-03-08 06:26:34,836] [Preprocessor.java:241] [main] Processing chromosome scaffold36108 Processing chromosome scaffold36108 INFO [2014-03-08 06:26:34,888] [Preprocessor.java:241] [main] Processing chromosome scaffold36114 Processing chromosome scaffold36114 INFO [2014-03-08 06:26:34,902] [Preprocessor.java:241] [main] Processing chromosome scaffold36118 Processing chromosome scaffold36118 INFO [2014-03-08 06:26:34,916] [Preprocessor.java:241] [main] Processing chromosome scaffold36122 Processing chromosome scaffold36122 INFO [2014-03-08 06:26:34,956] [Preprocessor.java:241] [main] Processing chromosome scaffold36140 Processing chromosome scaffold36140 INFO [2014-03-08 06:26:34,974] [Preprocessor.java:241] [main] Processing chromosome scaffold36156 Processing chromosome scaffold36156 INFO [2014-03-08 06:26:34,983] [Preprocessor.java:241] [main] Processing chromosome scaffold36158 Processing chromosome scaffold36158 INFO [2014-03-08 06:26:35,023] [Preprocessor.java:241] [main] Processing chromosome scaffold36170 Processing chromosome scaffold36170 INFO [2014-03-08 06:26:35,040] [Preprocessor.java:241] [main] Processing chromosome scaffold36174 Processing chromosome scaffold36174 INFO [2014-03-08 06:26:35,071] [Preprocessor.java:241] [main] Processing chromosome scaffold36190 Processing chromosome scaffold36190 INFO [2014-03-08 06:26:35,096] [Preprocessor.java:241] [main] Processing chromosome scaffold36196 Processing chromosome scaffold36196 INFO [2014-03-08 06:26:35,122] [Preprocessor.java:241] [main] Processing chromosome scaffold36198 Processing chromosome scaffold36198 INFO [2014-03-08 06:26:35,149] [Preprocessor.java:241] [main] Processing chromosome scaffold36202 Processing chromosome scaffold36202 INFO [2014-03-08 06:26:35,157] [Preprocessor.java:241] [main] Processing chromosome scaffold36208 Processing chromosome scaffold36208 INFO [2014-03-08 06:26:35,180] [Preprocessor.java:241] [main] Processing chromosome scaffold36210 Processing chromosome scaffold36210 INFO [2014-03-08 06:26:35,212] [Preprocessor.java:241] [main] Processing chromosome scaffold36218 Processing chromosome scaffold36218 INFO [2014-03-08 06:26:35,226] [Preprocessor.java:241] [main] Processing chromosome scaffold36240 Processing chromosome scaffold36240 INFO [2014-03-08 06:26:35,229] [Preprocessor.java:241] [main] Processing chromosome scaffold36278 Processing chromosome scaffold36278 INFO [2014-03-08 06:26:35,338] [Preprocessor.java:241] [main] Processing chromosome scaffold36286 Processing chromosome scaffold36286 INFO [2014-03-08 06:26:35,363] [Preprocessor.java:241] [main] Processing chromosome scaffold36298 Processing chromosome scaffold36298 INFO [2014-03-08 06:26:35,374] [Preprocessor.java:241] [main] Processing chromosome scaffold363 Processing chromosome scaffold363 INFO [2014-03-08 06:26:35,484] [Preprocessor.java:241] [main] Processing chromosome scaffold36314 Processing chromosome scaffold36314 INFO [2014-03-08 06:26:35,527] [Preprocessor.java:241] [main] Processing chromosome scaffold36318 Processing chromosome scaffold36318 INFO [2014-03-08 06:26:35,572] [Preprocessor.java:241] [main] Processing chromosome scaffold36324 Processing chromosome scaffold36324 INFO [2014-03-08 06:26:35,588] [Preprocessor.java:241] [main] Processing chromosome scaffold36334 Processing chromosome scaffold36334 INFO [2014-03-08 06:26:35,593] [Preprocessor.java:241] [main] Processing chromosome scaffold36336 Processing chromosome scaffold36336 INFO [2014-03-08 06:26:35,630] [Preprocessor.java:241] [main] Processing chromosome scaffold36342 Processing chromosome scaffold36342 INFO [2014-03-08 06:26:35,642] [Preprocessor.java:241] [main] Processing chromosome scaffold36348 Processing chromosome scaffold36348 INFO [2014-03-08 06:26:35,645] [Preprocessor.java:241] [main] Processing chromosome scaffold36356 Processing chromosome scaffold36356 INFO [2014-03-08 06:26:35,656] [Preprocessor.java:241] [main] Processing chromosome scaffold36362 Processing chromosome scaffold36362 INFO [2014-03-08 06:26:35,679] [Preprocessor.java:241] [main] Processing chromosome scaffold36378 Processing chromosome scaffold36378 INFO [2014-03-08 06:26:35,712] [Preprocessor.java:241] [main] Processing chromosome scaffold36384 Processing chromosome scaffold36384 INFO [2014-03-08 06:26:35,739] [Preprocessor.java:241] [main] Processing chromosome scaffold36390 Processing chromosome scaffold36390 INFO [2014-03-08 06:26:35,769] [Preprocessor.java:241] [main] Processing chromosome scaffold36398 Processing chromosome scaffold36398 INFO [2014-03-08 06:26:35,825] [Preprocessor.java:241] [main] Processing chromosome scaffold364 Processing chromosome scaffold364 INFO [2014-03-08 06:26:35,968] [Preprocessor.java:241] [main] Processing chromosome scaffold36406 Processing chromosome scaffold36406 INFO [2014-03-08 06:26:35,995] [Preprocessor.java:241] [main] Processing chromosome scaffold36410 Processing chromosome scaffold36410 INFO [2014-03-08 06:26:36,016] [Preprocessor.java:241] [main] Processing chromosome scaffold36420 Processing chromosome scaffold36420 INFO [2014-03-08 06:26:36,030] [Preprocessor.java:241] [main] Processing chromosome scaffold36426 Processing chromosome scaffold36426 INFO [2014-03-08 06:26:36,045] [Preprocessor.java:241] [main] Processing chromosome scaffold36432 Processing chromosome scaffold36432 INFO [2014-03-08 06:26:36,063] [Preprocessor.java:241] [main] Processing chromosome scaffold36450 Processing chromosome scaffold36450 INFO [2014-03-08 06:26:36,084] [Preprocessor.java:241] [main] Processing chromosome scaffold36452 Processing chromosome scaffold36452 INFO [2014-03-08 06:26:36,112] [Preprocessor.java:241] [main] Processing chromosome scaffold36456 Processing chromosome scaffold36456 INFO [2014-03-08 06:26:36,125] [Preprocessor.java:241] [main] Processing chromosome scaffold36462 Processing chromosome scaffold36462 INFO [2014-03-08 06:26:36,162] [Preprocessor.java:241] [main] Processing chromosome scaffold36470 Processing chromosome scaffold36470 INFO [2014-03-08 06:26:36,190] [Preprocessor.java:241] [main] Processing chromosome scaffold36474 Processing chromosome scaffold36474 INFO [2014-03-08 06:26:36,239] [Preprocessor.java:241] [main] Processing chromosome scaffold36476 Processing chromosome scaffold36476 INFO [2014-03-08 06:26:36,256] [Preprocessor.java:241] [main] Processing chromosome scaffold36482 Processing chromosome scaffold36482 INFO [2014-03-08 06:26:36,265] [Preprocessor.java:241] [main] Processing chromosome scaffold36490 Processing chromosome scaffold36490 INFO [2014-03-08 06:26:36,306] [Preprocessor.java:241] [main] Processing chromosome scaffold36492 Processing chromosome scaffold36492 INFO [2014-03-08 06:26:36,317] [Preprocessor.java:241] [main] Processing chromosome scaffold36494 Processing chromosome scaffold36494 INFO [2014-03-08 06:26:36,347] [Preprocessor.java:241] [main] Processing chromosome scaffold365 Processing chromosome scaffold365 INFO [2014-03-08 06:26:36,503] [Preprocessor.java:241] [main] Processing chromosome scaffold36506 Processing chromosome scaffold36506 INFO [2014-03-08 06:26:36,520] [Preprocessor.java:241] [main] Processing chromosome scaffold36510 Processing chromosome scaffold36510 INFO [2014-03-08 06:26:36,524] [Preprocessor.java:241] [main] Processing chromosome scaffold36516 Processing chromosome scaffold36516 INFO [2014-03-08 06:26:36,531] [Preprocessor.java:241] [main] Processing chromosome scaffold36526 Processing chromosome scaffold36526 INFO [2014-03-08 06:26:36,552] [Preprocessor.java:241] [main] Processing chromosome scaffold36534 Processing chromosome scaffold36534 INFO [2014-03-08 06:26:36,555] [Preprocessor.java:241] [main] Processing chromosome scaffold36536 Processing chromosome scaffold36536 INFO [2014-03-08 06:26:36,568] [Preprocessor.java:241] [main] Processing chromosome scaffold36542 Processing chromosome scaffold36542 INFO [2014-03-08 06:26:36,597] [Preprocessor.java:241] [main] Processing chromosome scaffold36548 Processing chromosome scaffold36548 INFO [2014-03-08 06:26:36,624] [Preprocessor.java:241] [main] Processing chromosome scaffold36572 Processing chromosome scaffold36572 INFO [2014-03-08 06:26:36,667] [Preprocessor.java:241] [main] Processing chromosome scaffold36590 Processing chromosome scaffold36590 INFO [2014-03-08 06:26:36,678] [Preprocessor.java:241] [main] Processing chromosome scaffold36592 Processing chromosome scaffold36592 INFO [2014-03-08 06:26:36,689] [Preprocessor.java:241] [main] Processing chromosome scaffold36594 Processing chromosome scaffold36594 INFO [2014-03-08 06:26:36,696] [Preprocessor.java:241] [main] Processing chromosome scaffold36598 Processing chromosome scaffold36598 INFO [2014-03-08 06:26:36,709] [Preprocessor.java:241] [main] Processing chromosome scaffold366 Processing chromosome scaffold366 INFO [2014-03-08 06:26:36,771] [Preprocessor.java:241] [main] Processing chromosome scaffold36624 Processing chromosome scaffold36624 INFO [2014-03-08 06:26:36,780] [Preprocessor.java:241] [main] Processing chromosome scaffold36630 Processing chromosome scaffold36630 INFO [2014-03-08 06:26:36,787] [Preprocessor.java:241] [main] Processing chromosome scaffold36638 Processing chromosome scaffold36638 INFO [2014-03-08 06:26:36,817] [Preprocessor.java:241] [main] Processing chromosome scaffold36640 Processing chromosome scaffold36640 INFO [2014-03-08 06:26:36,845] [Preprocessor.java:241] [main] Processing chromosome scaffold36642 Processing chromosome scaffold36642 INFO [2014-03-08 06:26:36,872] [Preprocessor.java:241] [main] Processing chromosome scaffold36650 Processing chromosome scaffold36650 INFO [2014-03-08 06:26:36,882] [Preprocessor.java:241] [main] Processing chromosome scaffold36654 Processing chromosome scaffold36654 INFO [2014-03-08 06:26:36,928] [Preprocessor.java:241] [main] Processing chromosome scaffold36660 Processing chromosome scaffold36660 INFO [2014-03-08 06:26:36,938] [Preprocessor.java:241] [main] Processing chromosome scaffold36664 Processing chromosome scaffold36664 INFO [2014-03-08 06:26:36,957] [Preprocessor.java:241] [main] Processing chromosome scaffold36672 Processing chromosome scaffold36672 INFO [2014-03-08 06:26:36,974] [Preprocessor.java:241] [main] Processing chromosome scaffold36674 Processing chromosome scaffold36674 INFO [2014-03-08 06:26:37,006] [Preprocessor.java:241] [main] Processing chromosome scaffold36678 Processing chromosome scaffold36678 INFO [2014-03-08 06:26:37,029] [Preprocessor.java:241] [main] Processing chromosome scaffold36684 Processing chromosome scaffold36684 INFO [2014-03-08 06:26:37,034] [Preprocessor.java:241] [main] Processing chromosome scaffold36698 Processing chromosome scaffold36698 INFO [2014-03-08 06:26:37,132] [Preprocessor.java:241] [main] Processing chromosome scaffold36716 Processing chromosome scaffold36716 INFO [2014-03-08 06:26:37,172] [Preprocessor.java:241] [main] Processing chromosome scaffold36728 Processing chromosome scaffold36728 INFO [2014-03-08 06:26:37,215] [Preprocessor.java:241] [main] Processing chromosome scaffold36730 Processing chromosome scaffold36730 INFO [2014-03-08 06:26:37,236] [Preprocessor.java:241] [main] Processing chromosome scaffold36732 Processing chromosome scaffold36732 INFO [2014-03-08 06:26:37,274] [Preprocessor.java:241] [main] Processing chromosome scaffold36736 Processing chromosome scaffold36736 INFO [2014-03-08 06:26:37,304] [Preprocessor.java:241] [main] Processing chromosome scaffold36748 Processing chromosome scaffold36748 INFO [2014-03-08 06:26:37,315] [Preprocessor.java:241] [main] Processing chromosome scaffold36758 Processing chromosome scaffold36758 INFO [2014-03-08 06:26:37,359] [Preprocessor.java:241] [main] Processing chromosome scaffold36760 Processing chromosome scaffold36760 INFO [2014-03-08 06:26:37,369] [Preprocessor.java:241] [main] Processing chromosome scaffold36768 Processing chromosome scaffold36768 INFO [2014-03-08 06:26:37,378] [Preprocessor.java:241] [main] Processing chromosome scaffold36774 Processing chromosome scaffold36774 INFO [2014-03-08 06:26:37,402] [Preprocessor.java:241] [main] Processing chromosome scaffold36778 Processing chromosome scaffold36778 INFO [2014-03-08 06:26:37,411] [Preprocessor.java:241] [main] Processing chromosome scaffold36790 Processing chromosome scaffold36790 INFO [2014-03-08 06:26:37,424] [Preprocessor.java:241] [main] Processing chromosome scaffold36794 Processing chromosome scaffold36794 INFO [2014-03-08 06:26:37,439] [Preprocessor.java:241] [main] Processing chromosome scaffold368 Processing chromosome scaffold368 .INFO [2014-03-08 06:26:37,521] [Preprocessor.java:241] [main] Processing chromosome scaffold36802 Processing chromosome scaffold36802 INFO [2014-03-08 06:26:37,533] [Preprocessor.java:241] [main] Processing chromosome scaffold36806 Processing chromosome scaffold36806 INFO [2014-03-08 06:26:37,552] [Preprocessor.java:241] [main] Processing chromosome scaffold36808 Processing chromosome scaffold36808 INFO [2014-03-08 06:26:37,565] [Preprocessor.java:241] [main] Processing chromosome scaffold36812 Processing chromosome scaffold36812 INFO [2014-03-08 06:26:37,587] [Preprocessor.java:241] [main] Processing chromosome scaffold36816 Processing chromosome scaffold36816 INFO [2014-03-08 06:26:37,619] [Preprocessor.java:241] [main] Processing chromosome scaffold36820 Processing chromosome scaffold36820 INFO [2014-03-08 06:26:37,638] [Preprocessor.java:241] [main] Processing chromosome scaffold36848 Processing chromosome scaffold36848 INFO [2014-03-08 06:26:37,655] [Preprocessor.java:241] [main] Processing chromosome scaffold36850 Processing chromosome scaffold36850 INFO [2014-03-08 06:26:37,668] [Preprocessor.java:241] [main] Processing chromosome scaffold36854 Processing chromosome scaffold36854 INFO [2014-03-08 06:26:37,680] [Preprocessor.java:241] [main] Processing chromosome scaffold36858 Processing chromosome scaffold36858 INFO [2014-03-08 06:26:37,687] [Preprocessor.java:241] [main] Processing chromosome scaffold36862 Processing chromosome scaffold36862 INFO [2014-03-08 06:26:37,717] [Preprocessor.java:241] [main] Processing chromosome scaffold36866 Processing chromosome scaffold36866 INFO [2014-03-08 06:26:37,743] [Preprocessor.java:241] [main] Processing chromosome scaffold36872 Processing chromosome scaffold36872 INFO [2014-03-08 06:26:37,755] [Preprocessor.java:241] [main] Processing chromosome scaffold36886 Processing chromosome scaffold36886 INFO [2014-03-08 06:26:37,776] [Preprocessor.java:241] [main] Processing chromosome scaffold36898 Processing chromosome scaffold36898 INFO [2014-03-08 06:26:37,795] [Preprocessor.java:241] [main] Processing chromosome scaffold369 Processing chromosome scaffold369 INFO [2014-03-08 06:26:37,873] [Preprocessor.java:241] [main] Processing chromosome scaffold36900 Processing chromosome scaffold36900 INFO [2014-03-08 06:26:37,898] [Preprocessor.java:241] [main] Processing chromosome scaffold36904 Processing chromosome scaffold36904 INFO [2014-03-08 06:26:37,935] [Preprocessor.java:241] [main] Processing chromosome scaffold36906 Processing chromosome scaffold36906 INFO [2014-03-08 06:26:37,952] [Preprocessor.java:241] [main] Processing chromosome scaffold36916 Processing chromosome scaffold36916 INFO [2014-03-08 06:26:37,985] [Preprocessor.java:241] [main] Processing chromosome scaffold36926 Processing chromosome scaffold36926 INFO [2014-03-08 06:26:38,007] [Preprocessor.java:241] [main] Processing chromosome scaffold36928 Processing chromosome scaffold36928 INFO [2014-03-08 06:26:38,031] [Preprocessor.java:241] [main] Processing chromosome scaffold36936 Processing chromosome scaffold36936 INFO [2014-03-08 06:26:38,058] [Preprocessor.java:241] [main] Processing chromosome scaffold36940 Processing chromosome scaffold36940 INFO [2014-03-08 06:26:38,065] [Preprocessor.java:241] [main] Processing chromosome scaffold36970 Processing chromosome scaffold36970 INFO [2014-03-08 06:26:38,074] [Preprocessor.java:241] [main] Processing chromosome scaffold36980 Processing chromosome scaffold36980 INFO [2014-03-08 06:26:38,099] [Preprocessor.java:241] [main] Processing chromosome scaffold36994 Processing chromosome scaffold36994 INFO [2014-03-08 06:26:38,145] [Preprocessor.java:241] [main] Processing chromosome scaffold36998 Processing chromosome scaffold36998 INFO [2014-03-08 06:26:38,154] [Preprocessor.java:241] [main] Processing chromosome scaffold37 Processing chromosome scaffold37 INFO [2014-03-08 06:26:38,172] [Preprocessor.java:241] [main] Processing chromosome scaffold370 Processing chromosome scaffold370 INFO [2014-03-08 06:26:38,324] [Preprocessor.java:241] [main] Processing chromosome scaffold37002 Processing chromosome scaffold37002 INFO [2014-03-08 06:26:38,355] [Preprocessor.java:241] [main] Processing chromosome scaffold37006 Processing chromosome scaffold37006 INFO [2014-03-08 06:26:38,373] [Preprocessor.java:241] [main] Processing chromosome scaffold37010 Processing chromosome scaffold37010 INFO [2014-03-08 06:26:38,403] [Preprocessor.java:241] [main] Processing chromosome scaffold37014 Processing chromosome scaffold37014 INFO [2014-03-08 06:26:38,459] [Preprocessor.java:241] [main] Processing chromosome scaffold37028 Processing chromosome scaffold37028 INFO [2014-03-08 06:26:38,476] [Preprocessor.java:241] [main] Processing chromosome scaffold37032 Processing chromosome scaffold37032 INFO [2014-03-08 06:26:38,484] [Preprocessor.java:241] [main] Processing chromosome scaffold37042 Processing chromosome scaffold37042 INFO [2014-03-08 06:26:38,501] [Preprocessor.java:241] [main] Processing chromosome scaffold37046 Processing chromosome scaffold37046 INFO [2014-03-08 06:26:38,520] [Preprocessor.java:241] [main] Processing chromosome scaffold37050 Processing chromosome scaffold37050 INFO [2014-03-08 06:26:38,527] [Preprocessor.java:241] [main] Processing chromosome scaffold37054 Processing chromosome scaffold37054 INFO [2014-03-08 06:26:38,536] [Preprocessor.java:241] [main] Processing chromosome scaffold37062 Processing chromosome scaffold37062 INFO [2014-03-08 06:26:38,565] [Preprocessor.java:241] [main] Processing chromosome scaffold37064 Processing chromosome scaffold37064 INFO [2014-03-08 06:26:38,581] [Preprocessor.java:241] [main] Processing chromosome scaffold37068 Processing chromosome scaffold37068 INFO [2014-03-08 06:26:38,651] [Preprocessor.java:241] [main] Processing chromosome scaffold37080 Processing chromosome scaffold37080 INFO [2014-03-08 06:26:38,663] [Preprocessor.java:241] [main] Processing chromosome scaffold37082 Processing chromosome scaffold37082 INFO [2014-03-08 06:26:38,671] [Preprocessor.java:241] [main] Processing chromosome scaffold37092 Processing chromosome scaffold37092 INFO [2014-03-08 06:26:38,682] [Preprocessor.java:241] [main] Processing chromosome scaffold37096 Processing chromosome scaffold37096 INFO [2014-03-08 06:26:38,705] [Preprocessor.java:241] [main] Processing chromosome scaffold37098 Processing chromosome scaffold37098 INFO [2014-03-08 06:26:38,715] [Preprocessor.java:241] [main] Processing chromosome scaffold371 Processing chromosome scaffold371 INFO [2014-03-08 06:26:38,728] [Preprocessor.java:241] [main] Processing chromosome scaffold37124 Processing chromosome scaffold37124 INFO [2014-03-08 06:26:38,734] [Preprocessor.java:241] [main] Processing chromosome scaffold37128 Processing chromosome scaffold37128 INFO [2014-03-08 06:26:38,768] [Preprocessor.java:241] [main] Processing chromosome scaffold37134 Processing chromosome scaffold37134 INFO [2014-03-08 06:26:38,788] [Preprocessor.java:241] [main] Processing chromosome scaffold37148 Processing chromosome scaffold37148 INFO [2014-03-08 06:26:38,808] [Preprocessor.java:241] [main] Processing chromosome scaffold37154 Processing chromosome scaffold37154 INFO [2014-03-08 06:26:38,815] [Preprocessor.java:241] [main] Processing chromosome scaffold37176 Processing chromosome scaffold37176 INFO [2014-03-08 06:26:38,822] [Preprocessor.java:241] [main] Processing chromosome scaffold37178 Processing chromosome scaffold37178 INFO [2014-03-08 06:26:38,832] [Preprocessor.java:241] [main] Processing chromosome scaffold37186 Processing chromosome scaffold37186 INFO [2014-03-08 06:26:38,845] [Preprocessor.java:241] [main] Processing chromosome scaffold372 Processing chromosome scaffold372 INFO [2014-03-08 06:26:38,961] [Preprocessor.java:241] [main] Processing chromosome scaffold37200 Processing chromosome scaffold37200 INFO [2014-03-08 06:26:38,968] [Preprocessor.java:241] [main] Processing chromosome scaffold37206 Processing chromosome scaffold37206 INFO [2014-03-08 06:26:38,974] [Preprocessor.java:241] [main] Processing chromosome scaffold37214 Processing chromosome scaffold37214 INFO [2014-03-08 06:26:38,988] [Preprocessor.java:241] [main] Processing chromosome scaffold37248 Processing chromosome scaffold37248 INFO [2014-03-08 06:26:39,013] [Preprocessor.java:241] [main] Processing chromosome scaffold37252 Processing chromosome scaffold37252 INFO [2014-03-08 06:26:39,028] [Preprocessor.java:241] [main] Processing chromosome scaffold37278 Processing chromosome scaffold37278 INFO [2014-03-08 06:26:39,047] [Preprocessor.java:241] [main] Processing chromosome scaffold37286 Processing chromosome scaffold37286 INFO [2014-03-08 06:26:39,061] [Preprocessor.java:241] [main] Processing chromosome scaffold37290 Processing chromosome scaffold37290 INFO [2014-03-08 06:26:39,066] [Preprocessor.java:241] [main] Processing chromosome scaffold37292 Processing chromosome scaffold37292 INFO [2014-03-08 06:26:39,091] [Preprocessor.java:241] [main] Processing chromosome scaffold37308 Processing chromosome scaffold37308 INFO [2014-03-08 06:26:39,103] [Preprocessor.java:241] [main] Processing chromosome scaffold37344 Processing chromosome scaffold37344 INFO [2014-03-08 06:26:39,144] [Preprocessor.java:241] [main] Processing chromosome scaffold37358 Processing chromosome scaffold37358 INFO [2014-03-08 06:26:39,167] [Preprocessor.java:241] [main] Processing chromosome scaffold37378 Processing chromosome scaffold37378 INFO [2014-03-08 06:26:39,192] [Preprocessor.java:241] [main] Processing chromosome scaffold37386 Processing chromosome scaffold37386 INFO [2014-03-08 06:26:39,221] [Preprocessor.java:241] [main] Processing chromosome scaffold37396 Processing chromosome scaffold37396 INFO [2014-03-08 06:26:39,247] [Preprocessor.java:241] [main] Processing chromosome scaffold374 Processing chromosome scaffold374 INFO [2014-03-08 06:26:39,284] [Preprocessor.java:241] [main] Processing chromosome scaffold37400 Processing chromosome scaffold37400 INFO [2014-03-08 06:26:39,300] [Preprocessor.java:241] [main] Processing chromosome scaffold37408 Processing chromosome scaffold37408 INFO [2014-03-08 06:26:39,308] [Preprocessor.java:241] [main] Processing chromosome scaffold37418 Processing chromosome scaffold37418 INFO [2014-03-08 06:26:39,325] [Preprocessor.java:241] [main] Processing chromosome scaffold37422 Processing chromosome scaffold37422 INFO [2014-03-08 06:26:39,333] [Preprocessor.java:241] [main] Processing chromosome scaffold37424 Processing chromosome scaffold37424 INFO [2014-03-08 06:26:39,365] [Preprocessor.java:241] [main] Processing chromosome scaffold37426 Processing chromosome scaffold37426 INFO [2014-03-08 06:26:39,376] [Preprocessor.java:241] [main] Processing chromosome scaffold37428 Processing chromosome scaffold37428 INFO [2014-03-08 06:26:39,388] [Preprocessor.java:241] [main] Processing chromosome scaffold37430 Processing chromosome scaffold37430 INFO [2014-03-08 06:26:39,394] [Preprocessor.java:241] [main] Processing chromosome scaffold37432 Processing chromosome scaffold37432 INFO [2014-03-08 06:26:39,399] [Preprocessor.java:241] [main] Processing chromosome scaffold37436 Processing chromosome scaffold37436 INFO [2014-03-08 06:26:39,428] [Preprocessor.java:241] [main] Processing chromosome scaffold37438 Processing chromosome scaffold37438 INFO [2014-03-08 06:26:39,438] [Preprocessor.java:241] [main] Processing chromosome scaffold37460 Processing chromosome scaffold37460 INFO [2014-03-08 06:26:39,495] [Preprocessor.java:241] [main] Processing chromosome scaffold37468 Processing chromosome scaffold37468 INFO [2014-03-08 06:26:39,509] [Preprocessor.java:241] [main] Processing chromosome scaffold37472 Processing chromosome scaffold37472 INFO [2014-03-08 06:26:39,512] [Preprocessor.java:241] [main] Processing chromosome scaffold37488 Processing chromosome scaffold37488 INFO [2014-03-08 06:26:39,533] [Preprocessor.java:241] [main] Processing chromosome scaffold37496 Processing chromosome scaffold37496 INFO [2014-03-08 06:26:39,546] [Preprocessor.java:241] [main] Processing chromosome scaffold37498 Processing chromosome scaffold37498 INFO [2014-03-08 06:26:39,556] [Preprocessor.java:241] [main] Processing chromosome scaffold37500 Processing chromosome scaffold37500 INFO [2014-03-08 06:26:39,580] [Preprocessor.java:241] [main] Processing chromosome scaffold37508 Processing chromosome scaffold37508 INFO [2014-03-08 06:26:39,605] [Preprocessor.java:241] [main] Processing chromosome scaffold37512 Processing chromosome scaffold37512 INFO [2014-03-08 06:26:39,647] [Preprocessor.java:241] [main] Processing chromosome scaffold37516 Processing chromosome scaffold37516 INFO [2014-03-08 06:26:39,663] [Preprocessor.java:241] [main] Processing chromosome scaffold37520 Processing chromosome scaffold37520 INFO [2014-03-08 06:26:39,669] [Preprocessor.java:241] [main] Processing chromosome scaffold37532 Processing chromosome scaffold37532 INFO [2014-03-08 06:26:39,694] [Preprocessor.java:241] [main] Processing chromosome scaffold37540 Processing chromosome scaffold37540 INFO [2014-03-08 06:26:39,740] [Preprocessor.java:241] [main] Processing chromosome scaffold37548 Processing chromosome scaffold37548 INFO [2014-03-08 06:26:39,759] [Preprocessor.java:241] [main] Processing chromosome scaffold37554 Processing chromosome scaffold37554 INFO [2014-03-08 06:26:39,780] [Preprocessor.java:241] [main] Processing chromosome scaffold37558 Processing chromosome scaffold37558 INFO [2014-03-08 06:26:39,790] [Preprocessor.java:241] [main] Processing chromosome scaffold37576 Processing chromosome scaffold37576 INFO [2014-03-08 06:26:39,824] [Preprocessor.java:241] [main] Processing chromosome scaffold37584 Processing chromosome scaffold37584 INFO [2014-03-08 06:26:39,830] [Preprocessor.java:241] [main] Processing chromosome scaffold376 Processing chromosome scaffold376 INFO [2014-03-08 06:26:39,973] [Preprocessor.java:241] [main] Processing chromosome scaffold37622 Processing chromosome scaffold37622 INFO [2014-03-08 06:26:39,993] [Preprocessor.java:241] [main] Processing chromosome scaffold37662 Processing chromosome scaffold37662 INFO [2014-03-08 06:26:40,006] [Preprocessor.java:241] [main] Processing chromosome scaffold37664 Processing chromosome scaffold37664 INFO [2014-03-08 06:26:40,050] [Preprocessor.java:241] [main] Processing chromosome scaffold37668 Processing chromosome scaffold37668 INFO [2014-03-08 06:26:40,068] [Preprocessor.java:241] [main] Processing chromosome scaffold37672 Processing chromosome scaffold37672 INFO [2014-03-08 06:26:40,099] [Preprocessor.java:241] [main] Processing chromosome scaffold37678 Processing chromosome scaffold37678 INFO [2014-03-08 06:26:40,142] [Preprocessor.java:241] [main] Processing chromosome scaffold37680 Processing chromosome scaffold37680 INFO [2014-03-08 06:26:40,193] [Preprocessor.java:241] [main] Processing chromosome scaffold37690 Processing chromosome scaffold37690 INFO [2014-03-08 06:26:40,235] [Preprocessor.java:241] [main] Processing chromosome scaffold37698 Processing chromosome scaffold37698 INFO [2014-03-08 06:26:40,239] [Preprocessor.java:241] [main] Processing chromosome scaffold377 Processing chromosome scaffold377 INFO [2014-03-08 06:26:40,334] [Preprocessor.java:241] [main] Processing chromosome scaffold37712 Processing chromosome scaffold37712 INFO [2014-03-08 06:26:40,369] [Preprocessor.java:241] [main] Processing chromosome scaffold37718 Processing chromosome scaffold37718 INFO [2014-03-08 06:26:40,374] [Preprocessor.java:241] [main] Processing chromosome scaffold37720 Processing chromosome scaffold37720 INFO [2014-03-08 06:26:40,388] [Preprocessor.java:241] [main] Processing chromosome scaffold37722 Processing chromosome scaffold37722 INFO [2014-03-08 06:26:40,394] [Preprocessor.java:241] [main] Processing chromosome scaffold37724 Processing chromosome scaffold37724 INFO [2014-03-08 06:26:40,422] [Preprocessor.java:241] [main] Processing chromosome scaffold37730 Processing chromosome scaffold37730 INFO [2014-03-08 06:26:40,448] [Preprocessor.java:241] [main] Processing chromosome scaffold37732 Processing chromosome scaffold37732 INFO [2014-03-08 06:26:40,477] [Preprocessor.java:241] [main] Processing chromosome scaffold37738 Processing chromosome scaffold37738 INFO [2014-03-08 06:26:40,505] [Preprocessor.java:241] [main] Processing chromosome scaffold37740 Processing chromosome scaffold37740 INFO [2014-03-08 06:26:40,538] [Preprocessor.java:241] [main] Processing chromosome scaffold37746 Processing chromosome scaffold37746 INFO [2014-03-08 06:26:40,554] [Preprocessor.java:241] [main] Processing chromosome scaffold37748 Processing chromosome scaffold37748 INFO [2014-03-08 06:26:40,573] [Preprocessor.java:241] [main] Processing chromosome scaffold37756 Processing chromosome scaffold37756 INFO [2014-03-08 06:26:40,579] [Preprocessor.java:241] [main] Processing chromosome scaffold37758 Processing chromosome scaffold37758 INFO [2014-03-08 06:26:40,586] [Preprocessor.java:241] [main] Processing chromosome scaffold37760 Processing chromosome scaffold37760 INFO [2014-03-08 06:26:40,614] [Preprocessor.java:241] [main] Processing chromosome scaffold37772 Processing chromosome scaffold37772 INFO [2014-03-08 06:26:40,645] [Preprocessor.java:241] [main] Processing chromosome scaffold37788 Processing chromosome scaffold37788 INFO [2014-03-08 06:26:40,654] [Preprocessor.java:241] [main] Processing chromosome scaffold37790 Processing chromosome scaffold37790 INFO [2014-03-08 06:26:40,662] [Preprocessor.java:241] [main] Processing chromosome scaffold37794 Processing chromosome scaffold37794 INFO [2014-03-08 06:26:40,687] [Preprocessor.java:241] [main] Processing chromosome scaffold378 Processing chromosome scaffold378 INFO [2014-03-08 06:26:40,865] [Preprocessor.java:241] [main] Processing chromosome scaffold37808 Processing chromosome scaffold37808 INFO [2014-03-08 06:26:40,874] [Preprocessor.java:241] [main] Processing chromosome scaffold37816 Processing chromosome scaffold37816 INFO [2014-03-08 06:26:40,880] [Preprocessor.java:241] [main] Processing chromosome scaffold37834 Processing chromosome scaffold37834 INFO [2014-03-08 06:26:40,893] [Preprocessor.java:241] [main] Processing chromosome scaffold37838 Processing chromosome scaffold37838 INFO [2014-03-08 06:26:40,909] [Preprocessor.java:241] [main] Processing chromosome scaffold37844 Processing chromosome scaffold37844 INFO [2014-03-08 06:26:40,941] [Preprocessor.java:241] [main] Processing chromosome scaffold37850 Processing chromosome scaffold37850 INFO [2014-03-08 06:26:40,956] [Preprocessor.java:241] [main] Processing chromosome scaffold37856 Processing chromosome scaffold37856 INFO [2014-03-08 06:26:40,969] [Preprocessor.java:241] [main] Processing chromosome scaffold37858 Processing chromosome scaffold37858 INFO [2014-03-08 06:26:40,993] [Preprocessor.java:241] [main] Processing chromosome scaffold37874 Processing chromosome scaffold37874 INFO [2014-03-08 06:26:41,011] [Preprocessor.java:241] [main] Processing chromosome scaffold37876 Processing chromosome scaffold37876 INFO [2014-03-08 06:26:41,029] [Preprocessor.java:241] [main] Processing chromosome scaffold37880 Processing chromosome scaffold37880 INFO [2014-03-08 06:26:41,067] [Preprocessor.java:241] [main] Processing chromosome scaffold37884 Processing chromosome scaffold37884 INFO [2014-03-08 06:26:41,112] [Preprocessor.java:241] [main] Processing chromosome scaffold37892 Processing chromosome scaffold37892 INFO [2014-03-08 06:26:41,131] [Preprocessor.java:241] [main] Processing chromosome scaffold379 Processing chromosome scaffold379 INFO [2014-03-08 06:26:41,136] [Preprocessor.java:241] [main] Processing chromosome scaffold37900 Processing chromosome scaffold37900 INFO [2014-03-08 06:26:41,159] [Preprocessor.java:241] [main] Processing chromosome scaffold37902 Processing chromosome scaffold37902 INFO [2014-03-08 06:26:41,173] [Preprocessor.java:241] [main] Processing chromosome scaffold37906 Processing chromosome scaffold37906 INFO [2014-03-08 06:26:41,185] [Preprocessor.java:241] [main] Processing chromosome scaffold37938 Processing chromosome scaffold37938 INFO [2014-03-08 06:26:41,206] [Preprocessor.java:241] [main] Processing chromosome scaffold37944 Processing chromosome scaffold37944 INFO [2014-03-08 06:26:41,225] [Preprocessor.java:241] [main] Processing chromosome scaffold37946 Processing chromosome scaffold37946 INFO [2014-03-08 06:26:41,240] [Preprocessor.java:241] [main] Processing chromosome scaffold37966 Processing chromosome scaffold37966 INFO [2014-03-08 06:26:41,258] [Preprocessor.java:241] [main] Processing chromosome scaffold37968 Processing chromosome scaffold37968 INFO [2014-03-08 06:26:41,266] [Preprocessor.java:241] [main] Processing chromosome scaffold37972 Processing chromosome scaffold37972 INFO [2014-03-08 06:26:41,291] [Preprocessor.java:241] [main] Processing chromosome scaffold37990 Processing chromosome scaffold37990 INFO [2014-03-08 06:26:41,298] [Preprocessor.java:241] [main] Processing chromosome scaffold37992 Processing chromosome scaffold37992 INFO [2014-03-08 06:26:41,324] [Preprocessor.java:241] [main] Processing chromosome scaffold38002 Processing chromosome scaffold38002 INFO [2014-03-08 06:26:41,354] [Preprocessor.java:241] [main] Processing chromosome scaffold38006 Processing chromosome scaffold38006 INFO [2014-03-08 06:26:41,374] [Preprocessor.java:241] [main] Processing chromosome scaffold38010 Processing chromosome scaffold38010 INFO [2014-03-08 06:26:41,428] [Preprocessor.java:241] [main] Processing chromosome scaffold38020 Processing chromosome scaffold38020 INFO [2014-03-08 06:26:41,438] [Preprocessor.java:241] [main] Processing chromosome scaffold38024 Processing chromosome scaffold38024 INFO [2014-03-08 06:26:41,454] [Preprocessor.java:241] [main] Processing chromosome scaffold38026 Processing chromosome scaffold38026 INFO [2014-03-08 06:26:41,495] [Preprocessor.java:241] [main] Processing chromosome scaffold38030 Processing chromosome scaffold38030 INFO [2014-03-08 06:26:41,555] [Preprocessor.java:241] [main] Processing chromosome scaffold38034 Processing chromosome scaffold38034 INFO [2014-03-08 06:26:41,568] [Preprocessor.java:241] [main] Processing chromosome scaffold38048 Processing chromosome scaffold38048 INFO [2014-03-08 06:26:41,594] [Preprocessor.java:241] [main] Processing chromosome scaffold38054 Processing chromosome scaffold38054 INFO [2014-03-08 06:26:41,601] [Preprocessor.java:241] [main] Processing chromosome scaffold38056 Processing chromosome scaffold38056 INFO [2014-03-08 06:26:41,621] [Preprocessor.java:241] [main] Processing chromosome scaffold38058 Processing chromosome scaffold38058 INFO [2014-03-08 06:26:41,642] [Preprocessor.java:241] [main] Processing chromosome scaffold38062 Processing chromosome scaffold38062 INFO [2014-03-08 06:26:41,667] [Preprocessor.java:241] [main] Processing chromosome scaffold38066 Processing chromosome scaffold38066 INFO [2014-03-08 06:26:41,674] [Preprocessor.java:241] [main] Processing chromosome scaffold38072 Processing chromosome scaffold38072 INFO [2014-03-08 06:26:41,696] [Preprocessor.java:241] [main] Processing chromosome scaffold38078 Processing chromosome scaffold38078 INFO [2014-03-08 06:26:41,705] [Preprocessor.java:241] [main] Processing chromosome scaffold38090 Processing chromosome scaffold38090 INFO [2014-03-08 06:26:41,722] [Preprocessor.java:241] [main] Processing chromosome scaffold381 Processing chromosome scaffold381 INFO [2014-03-08 06:26:41,798] [Preprocessor.java:241] [main] Processing chromosome scaffold38108 Processing chromosome scaffold38108 INFO [2014-03-08 06:26:41,825] [Preprocessor.java:241] [main] Processing chromosome scaffold38116 Processing chromosome scaffold38116 INFO [2014-03-08 06:26:41,838] [Preprocessor.java:241] [main] Processing chromosome scaffold38122 Processing chromosome scaffold38122 INFO [2014-03-08 06:26:41,843] [Preprocessor.java:241] [main] Processing chromosome scaffold38130 Processing chromosome scaffold38130 INFO [2014-03-08 06:26:41,859] [Preprocessor.java:241] [main] Processing chromosome scaffold38136 Processing chromosome scaffold38136 INFO [2014-03-08 06:26:41,869] [Preprocessor.java:241] [main] Processing chromosome scaffold38148 Processing chromosome scaffold38148 INFO [2014-03-08 06:26:41,902] [Preprocessor.java:241] [main] Processing chromosome scaffold38152 Processing chromosome scaffold38152 INFO [2014-03-08 06:26:41,919] [Preprocessor.java:241] [main] Processing chromosome scaffold38162 Processing chromosome scaffold38162 INFO [2014-03-08 06:26:41,936] [Preprocessor.java:241] [main] Processing chromosome scaffold38166 Processing chromosome scaffold38166 INFO [2014-03-08 06:26:41,957] [Preprocessor.java:241] [main] Processing chromosome scaffold38174 Processing chromosome scaffold38174 INFO [2014-03-08 06:26:42,009] [Preprocessor.java:241] [main] Processing chromosome scaffold38184 Processing chromosome scaffold38184 INFO [2014-03-08 06:26:42,065] [Preprocessor.java:241] [main] Processing chromosome scaffold38186 Processing chromosome scaffold38186 INFO [2014-03-08 06:26:42,082] [Preprocessor.java:241] [main] Processing chromosome scaffold38190 Processing chromosome scaffold38190 INFO [2014-03-08 06:26:42,149] [Preprocessor.java:241] [main] Processing chromosome scaffold38194 Processing chromosome scaffold38194 INFO [2014-03-08 06:26:42,190] [Preprocessor.java:241] [main] Processing chromosome scaffold38196 Processing chromosome scaffold38196 INFO [2014-03-08 06:26:42,227] [Preprocessor.java:241] [main] Processing chromosome scaffold382 Processing chromosome scaffold382 INFO [2014-03-08 06:26:42,259] [Preprocessor.java:241] [main] Processing chromosome scaffold38210 Processing chromosome scaffold38210 INFO [2014-03-08 06:26:42,278] [Preprocessor.java:241] [main] Processing chromosome scaffold38216 Processing chromosome scaffold38216 INFO [2014-03-08 06:26:42,284] [Preprocessor.java:241] [main] Processing chromosome scaffold38220 Processing chromosome scaffold38220 INFO [2014-03-08 06:26:42,289] [Preprocessor.java:241] [main] Processing chromosome scaffold38222 Processing chromosome scaffold38222 INFO [2014-03-08 06:26:42,328] [Preprocessor.java:241] [main] Processing chromosome scaffold38256 Processing chromosome scaffold38256 INFO [2014-03-08 06:26:42,342] [Preprocessor.java:241] [main] Processing chromosome scaffold38264 Processing chromosome scaffold38264 INFO [2014-03-08 06:26:42,387] [Preprocessor.java:241] [main] Processing chromosome scaffold38270 Processing chromosome scaffold38270 INFO [2014-03-08 06:26:42,408] [Preprocessor.java:241] [main] Processing chromosome scaffold38272 Processing chromosome scaffold38272 INFO [2014-03-08 06:26:42,424] [Preprocessor.java:241] [main] Processing chromosome scaffold38274 Processing chromosome scaffold38274 INFO [2014-03-08 06:26:42,462] [Preprocessor.java:241] [main] Processing chromosome scaffold38276 Processing chromosome scaffold38276 INFO [2014-03-08 06:26:42,537] [Preprocessor.java:241] [main] Processing chromosome scaffold38284 Processing chromosome scaffold38284 INFO [2014-03-08 06:26:42,556] [Preprocessor.java:241] [main] Processing chromosome scaffold38290 Processing chromosome scaffold38290 INFO [2014-03-08 06:26:42,577] [Preprocessor.java:241] [main] Processing chromosome scaffold38292 Processing chromosome scaffold38292 INFO [2014-03-08 06:26:42,617] [Preprocessor.java:241] [main] Processing chromosome scaffold38298 Processing chromosome scaffold38298 INFO [2014-03-08 06:26:42,643] [Preprocessor.java:241] [main] Processing chromosome scaffold383 Processing chromosome scaffold383 INFO [2014-03-08 06:26:42,895] [Preprocessor.java:241] [main] Processing chromosome scaffold38302 Processing chromosome scaffold38302 INFO [2014-03-08 06:26:42,916] [Preprocessor.java:241] [main] Processing chromosome scaffold38306 Processing chromosome scaffold38306 INFO [2014-03-08 06:26:42,944] [Preprocessor.java:241] [main] Processing chromosome scaffold38310 Processing chromosome scaffold38310 INFO [2014-03-08 06:26:42,950] [Preprocessor.java:241] [main] Processing chromosome scaffold38348 Processing chromosome scaffold38348 INFO [2014-03-08 06:26:42,970] [Preprocessor.java:241] [main] Processing chromosome scaffold38354 Processing chromosome scaffold38354 INFO [2014-03-08 06:26:43,015] [Preprocessor.java:241] [main] Processing chromosome scaffold38360 Processing chromosome scaffold38360 INFO [2014-03-08 06:26:43,026] [Preprocessor.java:241] [main] Processing chromosome scaffold38364 Processing chromosome scaffold38364 INFO [2014-03-08 06:26:43,052] [Preprocessor.java:241] [main] Processing chromosome scaffold38366 Processing chromosome scaffold38366 INFO [2014-03-08 06:26:43,093] [Preprocessor.java:241] [main] Processing chromosome scaffold38370 Processing chromosome scaffold38370 INFO [2014-03-08 06:26:43,123] [Preprocessor.java:241] [main] Processing chromosome scaffold38372 Processing chromosome scaffold38372 INFO [2014-03-08 06:26:43,173] [Preprocessor.java:241] [main] Processing chromosome scaffold38374 Processing chromosome scaffold38374 INFO [2014-03-08 06:26:43,193] [Preprocessor.java:241] [main] Processing chromosome scaffold38376 Processing chromosome scaffold38376 INFO [2014-03-08 06:26:43,212] [Preprocessor.java:241] [main] Processing chromosome scaffold38378 Processing chromosome scaffold38378 INFO [2014-03-08 06:26:43,215] [Preprocessor.java:241] [main] Processing chromosome scaffold38382 Processing chromosome scaffold38382 INFO [2014-03-08 06:26:43,278] [Preprocessor.java:241] [main] Processing chromosome scaffold384 Processing chromosome scaffold384 INFO [2014-03-08 06:26:43,296] [Preprocessor.java:241] [main] Processing chromosome scaffold38400 Processing chromosome scaffold38400 INFO [2014-03-08 06:26:43,314] [Preprocessor.java:241] [main] Processing chromosome scaffold38422 Processing chromosome scaffold38422 INFO [2014-03-08 06:26:43,324] [Preprocessor.java:241] [main] Processing chromosome scaffold38438 Processing chromosome scaffold38438 INFO [2014-03-08 06:26:43,351] [Preprocessor.java:241] [main] Processing chromosome scaffold38444 Processing chromosome scaffold38444 INFO [2014-03-08 06:26:43,380] [Preprocessor.java:241] [main] Processing chromosome scaffold38448 Processing chromosome scaffold38448 INFO [2014-03-08 06:26:43,412] [Preprocessor.java:241] [main] Processing chromosome scaffold38458 Processing chromosome scaffold38458 INFO [2014-03-08 06:26:43,442] [Preprocessor.java:241] [main] Processing chromosome scaffold38464 Processing chromosome scaffold38464 INFO [2014-03-08 06:26:43,489] [Preprocessor.java:241] [main] Processing chromosome scaffold38466 Processing chromosome scaffold38466 INFO [2014-03-08 06:26:43,524] [Preprocessor.java:241] [main] Processing chromosome scaffold38468 Processing chromosome scaffold38468 INFO [2014-03-08 06:26:43,559] [Preprocessor.java:241] [main] Processing chromosome scaffold38480 Processing chromosome scaffold38480 INFO [2014-03-08 06:26:43,573] [Preprocessor.java:241] [main] Processing chromosome scaffold38492 Processing chromosome scaffold38492 INFO [2014-03-08 06:26:43,624] [Preprocessor.java:241] [main] Processing chromosome scaffold38494 Processing chromosome scaffold38494 INFO [2014-03-08 06:26:43,675] [Preprocessor.java:241] [main] Processing chromosome scaffold38498 Processing chromosome scaffold38498 INFO [2014-03-08 06:26:43,701] [Preprocessor.java:241] [main] Processing chromosome scaffold385 Processing chromosome scaffold385 INFO [2014-03-08 06:26:43,737] [Preprocessor.java:241] [main] Processing chromosome scaffold38508 Processing chromosome scaffold38508 INFO [2014-03-08 06:26:43,767] [Preprocessor.java:241] [main] Processing chromosome scaffold38510 Processing chromosome scaffold38510 INFO [2014-03-08 06:26:43,821] [Preprocessor.java:241] [main] Processing chromosome scaffold38514 Processing chromosome scaffold38514 INFO [2014-03-08 06:26:43,841] [Preprocessor.java:241] [main] Processing chromosome scaffold38524 Processing chromosome scaffold38524 INFO [2014-03-08 06:26:43,873] [Preprocessor.java:241] [main] Processing chromosome scaffold38532 Processing chromosome scaffold38532 INFO [2014-03-08 06:26:43,903] [Preprocessor.java:241] [main] Processing chromosome scaffold38546 Processing chromosome scaffold38546 INFO [2014-03-08 06:26:43,924] [Preprocessor.java:241] [main] Processing chromosome scaffold38552 Processing chromosome scaffold38552 INFO [2014-03-08 06:26:43,947] [Preprocessor.java:241] [main] Processing chromosome scaffold38558 Processing chromosome scaffold38558 INFO [2014-03-08 06:26:43,969] [Preprocessor.java:241] [main] Processing chromosome scaffold38568 Processing chromosome scaffold38568 INFO [2014-03-08 06:26:44,018] [Preprocessor.java:241] [main] Processing chromosome scaffold38576 Processing chromosome scaffold38576 INFO [2014-03-08 06:26:44,049] [Preprocessor.java:241] [main] Processing chromosome scaffold38580 Processing chromosome scaffold38580 INFO [2014-03-08 06:26:44,060] [Preprocessor.java:241] [main] Processing chromosome scaffold38596 Processing chromosome scaffold38596 INFO [2014-03-08 06:26:44,095] [Preprocessor.java:241] [main] Processing chromosome scaffold386 Processing chromosome scaffold386 INFO [2014-03-08 06:26:44,174] [Preprocessor.java:241] [main] Processing chromosome scaffold38608 Processing chromosome scaffold38608 INFO [2014-03-08 06:26:44,193] [Preprocessor.java:241] [main] Processing chromosome scaffold38612 Processing chromosome scaffold38612 INFO [2014-03-08 06:26:44,247] [Preprocessor.java:241] [main] Processing chromosome scaffold38626 Processing chromosome scaffold38626 INFO [2014-03-08 06:26:44,285] [Preprocessor.java:241] [main] Processing chromosome scaffold38638 Processing chromosome scaffold38638 INFO [2014-03-08 06:26:44,303] [Preprocessor.java:241] [main] Processing chromosome scaffold38650 Processing chromosome scaffold38650 INFO [2014-03-08 06:26:44,329] [Preprocessor.java:241] [main] Processing chromosome scaffold38654 Processing chromosome scaffold38654 INFO [2014-03-08 06:26:44,342] [Preprocessor.java:241] [main] Processing chromosome scaffold38672 Processing chromosome scaffold38672 INFO [2014-03-08 06:26:44,370] [Preprocessor.java:241] [main] Processing chromosome scaffold38674 Processing chromosome scaffold38674 INFO [2014-03-08 06:26:44,400] [Preprocessor.java:241] [main] Processing chromosome scaffold38678 Processing chromosome scaffold38678 INFO [2014-03-08 06:26:44,420] [Preprocessor.java:241] [main] Processing chromosome scaffold38686 Processing chromosome scaffold38686 INFO [2014-03-08 06:26:44,490] [Preprocessor.java:241] [main] Processing chromosome scaffold38688 Processing chromosome scaffold38688 INFO [2014-03-08 06:26:44,556] [Preprocessor.java:241] [main] Processing chromosome scaffold387 Processing chromosome scaffold387 INFO [2014-03-08 06:26:44,586] [Preprocessor.java:241] [main] Processing chromosome scaffold38700 Processing chromosome scaffold38700 20.0% INFO [2014-03-08 06:26:44,606] [Preprocessor.java:241] [main] Processing chromosome scaffold38704 Processing chromosome scaffold38704 INFO [2014-03-08 06:26:44,624] [Preprocessor.java:241] [main] Processing chromosome scaffold38714 Processing chromosome scaffold38714 INFO [2014-03-08 06:26:44,638] [Preprocessor.java:241] [main] Processing chromosome scaffold38736 Processing chromosome scaffold38736 INFO [2014-03-08 06:26:44,659] [Preprocessor.java:241] [main] Processing chromosome scaffold38750 Processing chromosome scaffold38750 INFO [2014-03-08 06:26:44,677] [Preprocessor.java:241] [main] Processing chromosome scaffold38752 Processing chromosome scaffold38752 INFO [2014-03-08 06:26:44,741] [Preprocessor.java:241] [main] Processing chromosome scaffold38756 Processing chromosome scaffold38756 INFO [2014-03-08 06:26:44,765] [Preprocessor.java:241] [main] Processing chromosome scaffold38764 Processing chromosome scaffold38764 INFO [2014-03-08 06:26:44,777] [Preprocessor.java:241] [main] Processing chromosome scaffold38774 Processing chromosome scaffold38774 INFO [2014-03-08 06:26:44,793] [Preprocessor.java:241] [main] Processing chromosome scaffold38780 Processing chromosome scaffold38780 INFO [2014-03-08 06:26:44,817] [Preprocessor.java:241] [main] Processing chromosome scaffold38784 Processing chromosome scaffold38784 INFO [2014-03-08 06:26:44,850] [Preprocessor.java:241] [main] Processing chromosome scaffold388 Processing chromosome scaffold388 INFO [2014-03-08 06:26:45,014] [Preprocessor.java:241] [main] Processing chromosome scaffold38804 Processing chromosome scaffold38804 INFO [2014-03-08 06:26:45,048] [Preprocessor.java:241] [main] Processing chromosome scaffold38816 Processing chromosome scaffold38816 INFO [2014-03-08 06:26:45,093] [Preprocessor.java:241] [main] Processing chromosome scaffold38818 Processing chromosome scaffold38818 INFO [2014-03-08 06:26:45,125] [Preprocessor.java:241] [main] Processing chromosome scaffold38822 Processing chromosome scaffold38822 INFO [2014-03-08 06:26:45,153] [Preprocessor.java:241] [main] Processing chromosome scaffold38824 Processing chromosome scaffold38824 INFO [2014-03-08 06:26:45,190] [Preprocessor.java:241] [main] Processing chromosome scaffold38828 Processing chromosome scaffold38828 INFO [2014-03-08 06:26:45,237] [Preprocessor.java:241] [main] Processing chromosome scaffold38848 Processing chromosome scaffold38848 INFO [2014-03-08 06:26:45,245] [Preprocessor.java:241] [main] Processing chromosome scaffold38854 Processing chromosome scaffold38854 INFO [2014-03-08 06:26:45,250] [Preprocessor.java:241] [main] Processing chromosome scaffold38856 Processing chromosome scaffold38856 INFO [2014-03-08 06:26:45,269] [Preprocessor.java:241] [main] Processing chromosome scaffold38864 Processing chromosome scaffold38864 INFO [2014-03-08 06:26:45,298] [Preprocessor.java:241] [main] Processing chromosome scaffold38876 Processing chromosome scaffold38876 INFO [2014-03-08 06:26:45,304] [Preprocessor.java:241] [main] Processing chromosome scaffold38882 Processing chromosome scaffold38882 INFO [2014-03-08 06:26:45,340] [Preprocessor.java:241] [main] Processing chromosome scaffold38884 Processing chromosome scaffold38884 INFO [2014-03-08 06:26:45,358] [Preprocessor.java:241] [main] Processing chromosome scaffold38898 Processing chromosome scaffold38898 INFO [2014-03-08 06:26:45,366] [Preprocessor.java:241] [main] Processing chromosome scaffold389 Processing chromosome scaffold389 INFO [2014-03-08 06:26:45,400] [Preprocessor.java:241] [main] Processing chromosome scaffold38900 Processing chromosome scaffold38900 INFO [2014-03-08 06:26:45,424] [Preprocessor.java:241] [main] Processing chromosome scaffold38902 Processing chromosome scaffold38902 INFO [2014-03-08 06:26:45,459] [Preprocessor.java:241] [main] Processing chromosome scaffold38904 Processing chromosome scaffold38904 INFO [2014-03-08 06:26:45,483] [Preprocessor.java:241] [main] Processing chromosome scaffold38908 Processing chromosome scaffold38908 INFO [2014-03-08 06:26:45,490] [Preprocessor.java:241] [main] Processing chromosome scaffold38912 Processing chromosome scaffold38912 INFO [2014-03-08 06:26:45,525] [Preprocessor.java:241] [main] Processing chromosome scaffold38916 Processing chromosome scaffold38916 INFO [2014-03-08 06:26:45,533] [Preprocessor.java:241] [main] Processing chromosome scaffold38920 Processing chromosome scaffold38920 INFO [2014-03-08 06:26:45,578] [Preprocessor.java:241] [main] Processing chromosome scaffold38922 Processing chromosome scaffold38922 INFO [2014-03-08 06:26:45,640] [Preprocessor.java:241] [main] Processing chromosome scaffold38934 Processing chromosome scaffold38934 INFO [2014-03-08 06:26:45,662] [Preprocessor.java:241] [main] Processing chromosome scaffold38944 Processing chromosome scaffold38944 INFO [2014-03-08 06:26:45,698] [Preprocessor.java:241] [main] Processing chromosome scaffold38952 Processing chromosome scaffold38952 INFO [2014-03-08 06:26:45,725] [Preprocessor.java:241] [main] Processing chromosome scaffold38966 Processing chromosome scaffold38966 INFO [2014-03-08 06:26:45,748] [Preprocessor.java:241] [main] Processing chromosome scaffold38974 Processing chromosome scaffold38974 INFO [2014-03-08 06:26:45,754] [Preprocessor.java:241] [main] Processing chromosome scaffold38976 Processing chromosome scaffold38976 INFO [2014-03-08 06:26:45,763] [Preprocessor.java:241] [main] Processing chromosome scaffold38978 Processing chromosome scaffold38978 INFO [2014-03-08 06:26:45,795] [Preprocessor.java:241] [main] Processing chromosome scaffold38980 Processing chromosome scaffold38980 INFO [2014-03-08 06:26:45,805] [Preprocessor.java:241] [main] Processing chromosome scaffold38984 Processing chromosome scaffold38984 INFO [2014-03-08 06:26:45,848] [Preprocessor.java:241] [main] Processing chromosome scaffold38990 Processing chromosome scaffold38990 INFO [2014-03-08 06:26:45,854] [Preprocessor.java:241] [main] Processing chromosome scaffold38996 Processing chromosome scaffold38996 INFO [2014-03-08 06:26:45,870] [Preprocessor.java:241] [main] Processing chromosome scaffold390 Processing chromosome scaffold390 INFO [2014-03-08 06:26:45,885] [Preprocessor.java:241] [main] Processing chromosome scaffold39000 Processing chromosome scaffold39000 INFO [2014-03-08 06:26:45,892] [Preprocessor.java:241] [main] Processing chromosome scaffold39008 Processing chromosome scaffold39008 INFO [2014-03-08 06:26:45,934] [Preprocessor.java:241] [main] Processing chromosome scaffold39014 Processing chromosome scaffold39014 INFO [2014-03-08 06:26:45,960] [Preprocessor.java:241] [main] Processing chromosome scaffold39028 Processing chromosome scaffold39028 INFO [2014-03-08 06:26:45,966] [Preprocessor.java:241] [main] Processing chromosome scaffold39030 Processing chromosome scaffold39030 INFO [2014-03-08 06:26:45,975] [Preprocessor.java:241] [main] Processing chromosome scaffold39040 Processing chromosome scaffold39040 INFO [2014-03-08 06:26:46,014] [Preprocessor.java:241] [main] Processing chromosome scaffold39050 Processing chromosome scaffold39050 INFO [2014-03-08 06:26:46,027] [Preprocessor.java:241] [main] Processing chromosome scaffold39064 Processing chromosome scaffold39064 INFO [2014-03-08 06:26:46,053] [Preprocessor.java:241] [main] Processing chromosome scaffold39066 Processing chromosome scaffold39066 INFO [2014-03-08 06:26:46,079] [Preprocessor.java:241] [main] Processing chromosome scaffold39068 Processing chromosome scaffold39068 INFO [2014-03-08 06:26:46,086] [Preprocessor.java:241] [main] Processing chromosome scaffold39074 Processing chromosome scaffold39074 INFO [2014-03-08 06:26:46,128] [Preprocessor.java:241] [main] Processing chromosome scaffold39078 Processing chromosome scaffold39078 INFO [2014-03-08 06:26:46,151] [Preprocessor.java:241] [main] Processing chromosome scaffold39080 Processing chromosome scaffold39080 INFO [2014-03-08 06:26:46,166] [Preprocessor.java:241] [main] Processing chromosome scaffold39088 Processing chromosome scaffold39088 INFO [2014-03-08 06:26:46,224] [Preprocessor.java:241] [main] Processing chromosome scaffold39096 Processing chromosome scaffold39096 INFO [2014-03-08 06:26:46,282] [Preprocessor.java:241] [main] Processing chromosome scaffold391 Processing chromosome scaffold391 INFO [2014-03-08 06:26:46,316] [Preprocessor.java:241] [main] Processing chromosome scaffold39120 Processing chromosome scaffold39120 INFO [2014-03-08 06:26:46,330] [Preprocessor.java:241] [main] Processing chromosome scaffold39122 Processing chromosome scaffold39122 INFO [2014-03-08 06:26:46,358] [Preprocessor.java:241] [main] Processing chromosome scaffold39126 Processing chromosome scaffold39126 INFO [2014-03-08 06:26:46,413] [Preprocessor.java:241] [main] Processing chromosome scaffold39134 Processing chromosome scaffold39134 INFO [2014-03-08 06:26:46,449] [Preprocessor.java:241] [main] Processing chromosome scaffold39142 Processing chromosome scaffold39142 INFO [2014-03-08 06:26:46,472] [Preprocessor.java:241] [main] Processing chromosome scaffold39144 Processing chromosome scaffold39144 INFO [2014-03-08 06:26:46,514] [Preprocessor.java:241] [main] Processing chromosome scaffold39156 Processing chromosome scaffold39156 INFO [2014-03-08 06:26:46,541] [Preprocessor.java:241] [main] Processing chromosome scaffold39158 Processing chromosome scaffold39158 INFO [2014-03-08 06:26:46,558] [Preprocessor.java:241] [main] Processing chromosome scaffold39174 Processing chromosome scaffold39174 INFO [2014-03-08 06:26:46,574] [Preprocessor.java:241] [main] Processing chromosome scaffold39176 Processing chromosome scaffold39176 INFO [2014-03-08 06:26:46,592] [Preprocessor.java:241] [main] Processing chromosome scaffold39180 Processing chromosome scaffold39180 INFO [2014-03-08 06:26:46,607] [Preprocessor.java:241] [main] Processing chromosome scaffold39184 Processing chromosome scaffold39184 INFO [2014-03-08 06:26:46,613] [Preprocessor.java:241] [main] Processing chromosome scaffold39196 Processing chromosome scaffold39196 INFO [2014-03-08 06:26:46,638] [Preprocessor.java:241] [main] Processing chromosome scaffold39198 Processing chromosome scaffold39198 INFO [2014-03-08 06:26:46,679] [Preprocessor.java:241] [main] Processing chromosome scaffold392 Processing chromosome scaffold392 INFO [2014-03-08 06:26:46,754] [Preprocessor.java:241] [main] Processing chromosome scaffold39202 Processing chromosome scaffold39202 INFO [2014-03-08 06:26:46,781] [Preprocessor.java:241] [main] Processing chromosome scaffold39212 Processing chromosome scaffold39212 INFO [2014-03-08 06:26:46,797] [Preprocessor.java:241] [main] Processing chromosome scaffold39214 Processing chromosome scaffold39214 INFO [2014-03-08 06:26:46,828] [Preprocessor.java:241] [main] Processing chromosome scaffold39220 Processing chromosome scaffold39220 INFO [2014-03-08 06:26:46,841] [Preprocessor.java:241] [main] Processing chromosome scaffold39222 Processing chromosome scaffold39222 INFO [2014-03-08 06:26:46,883] [Preprocessor.java:241] [main] Processing chromosome scaffold39240 Processing chromosome scaffold39240 INFO [2014-03-08 06:26:46,922] [Preprocessor.java:241] [main] Processing chromosome scaffold39244 Processing chromosome scaffold39244 INFO [2014-03-08 06:26:46,949] [Preprocessor.java:241] [main] Processing chromosome scaffold39258 Processing chromosome scaffold39258 INFO [2014-03-08 06:26:46,997] [Preprocessor.java:241] [main] Processing chromosome scaffold39262 Processing chromosome scaffold39262 INFO [2014-03-08 06:26:47,026] [Preprocessor.java:241] [main] Processing chromosome scaffold39268 Processing chromosome scaffold39268 INFO [2014-03-08 06:26:47,050] [Preprocessor.java:241] [main] Processing chromosome scaffold39272 Processing chromosome scaffold39272 INFO [2014-03-08 06:26:47,075] [Preprocessor.java:241] [main] Processing chromosome scaffold39274 Processing chromosome scaffold39274 INFO [2014-03-08 06:26:47,099] [Preprocessor.java:241] [main] Processing chromosome scaffold39292 Processing chromosome scaffold39292 INFO [2014-03-08 06:26:47,108] [Preprocessor.java:241] [main] Processing chromosome scaffold393 Processing chromosome scaffold393 INFO [2014-03-08 06:26:47,337] [Preprocessor.java:241] [main] Processing chromosome scaffold39316 Processing chromosome scaffold39316 INFO [2014-03-08 06:26:47,358] [Preprocessor.java:241] [main] Processing chromosome scaffold39320 Processing chromosome scaffold39320 INFO [2014-03-08 06:26:47,372] [Preprocessor.java:241] [main] Processing chromosome scaffold39326 Processing chromosome scaffold39326 INFO [2014-03-08 06:26:47,380] [Preprocessor.java:241] [main] Processing chromosome scaffold39334 Processing chromosome scaffold39334 INFO [2014-03-08 06:26:47,399] [Preprocessor.java:241] [main] Processing chromosome scaffold39346 Processing chromosome scaffold39346 INFO [2014-03-08 06:26:47,406] [Preprocessor.java:241] [main] Processing chromosome scaffold39352 Processing chromosome scaffold39352 INFO [2014-03-08 06:26:47,423] [Preprocessor.java:241] [main] Processing chromosome scaffold39358 Processing chromosome scaffold39358 INFO [2014-03-08 06:26:47,445] [Preprocessor.java:241] [main] Processing chromosome scaffold39364 Processing chromosome scaffold39364 INFO [2014-03-08 06:26:47,503] [Preprocessor.java:241] [main] Processing chromosome scaffold39366 Processing chromosome scaffold39366 INFO [2014-03-08 06:26:47,533] [Preprocessor.java:241] [main] Processing chromosome scaffold39368 Processing chromosome scaffold39368 INFO [2014-03-08 06:26:47,576] [Preprocessor.java:241] [main] Processing chromosome scaffold39380 Processing chromosome scaffold39380 INFO [2014-03-08 06:26:47,597] [Preprocessor.java:241] [main] Processing chromosome scaffold39384 Processing chromosome scaffold39384 INFO [2014-03-08 06:26:47,606] [Preprocessor.java:241] [main] Processing chromosome scaffold39390 Processing chromosome scaffold39390 INFO [2014-03-08 06:26:47,693] [Preprocessor.java:241] [main] Processing chromosome scaffold39394 Processing chromosome scaffold39394 INFO [2014-03-08 06:26:47,708] [Preprocessor.java:241] [main] Processing chromosome scaffold394 Processing chromosome scaffold394 INFO [2014-03-08 06:26:47,883] [Preprocessor.java:241] [main] Processing chromosome scaffold39410 Processing chromosome scaffold39410 INFO [2014-03-08 06:26:47,904] [Preprocessor.java:241] [main] Processing chromosome scaffold39412 Processing chromosome scaffold39412 INFO [2014-03-08 06:26:47,952] [Preprocessor.java:241] [main] Processing chromosome scaffold39424 Processing chromosome scaffold39424 INFO [2014-03-08 06:26:47,979] [Preprocessor.java:241] [main] Processing chromosome scaffold39464 Processing chromosome scaffold39464 INFO [2014-03-08 06:26:48,007] [Preprocessor.java:241] [main] Processing chromosome scaffold39470 Processing chromosome scaffold39470 INFO [2014-03-08 06:26:48,045] [Preprocessor.java:241] [main] Processing chromosome scaffold39472 Processing chromosome scaffold39472 INFO [2014-03-08 06:26:48,071] [Preprocessor.java:241] [main] Processing chromosome scaffold39476 Processing chromosome scaffold39476 INFO [2014-03-08 06:26:48,108] [Preprocessor.java:241] [main] Processing chromosome scaffold39482 Processing chromosome scaffold39482 INFO [2014-03-08 06:26:48,130] [Preprocessor.java:241] [main] Processing chromosome scaffold39488 Processing chromosome scaffold39488 INFO [2014-03-08 06:26:48,200] [Preprocessor.java:241] [main] Processing chromosome scaffold395 Processing chromosome scaffold395 INFO [2014-03-08 06:26:48,315] [Preprocessor.java:241] [main] Processing chromosome scaffold39500 Processing chromosome scaffold39500 INFO [2014-03-08 06:26:48,336] [Preprocessor.java:241] [main] Processing chromosome scaffold39508 Processing chromosome scaffold39508 INFO [2014-03-08 06:26:48,358] [Preprocessor.java:241] [main] Processing chromosome scaffold39514 Processing chromosome scaffold39514 INFO [2014-03-08 06:26:48,391] [Preprocessor.java:241] [main] Processing chromosome scaffold39522 Processing chromosome scaffold39522 INFO [2014-03-08 06:26:48,454] [Preprocessor.java:241] [main] Processing chromosome scaffold39524 Processing chromosome scaffold39524 INFO [2014-03-08 06:26:48,531] [Preprocessor.java:241] [main] Processing chromosome scaffold39526 Processing chromosome scaffold39526 INFO [2014-03-08 06:26:48,566] [Preprocessor.java:241] [main] Processing chromosome scaffold39536 Processing chromosome scaffold39536 INFO [2014-03-08 06:26:48,598] [Preprocessor.java:241] [main] Processing chromosome scaffold39570 Processing chromosome scaffold39570 INFO [2014-03-08 06:26:48,619] [Preprocessor.java:241] [main] Processing chromosome scaffold39572 Processing chromosome scaffold39572 INFO [2014-03-08 06:26:48,661] [Preprocessor.java:241] [main] Processing chromosome scaffold39574 Processing chromosome scaffold39574 INFO [2014-03-08 06:26:48,708] [Preprocessor.java:241] [main] Processing chromosome scaffold39580 Processing chromosome scaffold39580 INFO [2014-03-08 06:26:48,754] [Preprocessor.java:241] [main] Processing chromosome scaffold39582 Processing chromosome scaffold39582 INFO [2014-03-08 06:26:48,786] [Preprocessor.java:241] [main] Processing chromosome scaffold39592 Processing chromosome scaffold39592 INFO [2014-03-08 06:26:48,838] [Preprocessor.java:241] [main] Processing chromosome scaffold39594 Processing chromosome scaffold39594 INFO [2014-03-08 06:26:48,872] [Preprocessor.java:241] [main] Processing chromosome scaffold39598 Processing chromosome scaffold39598 INFO [2014-03-08 06:26:48,877] [Preprocessor.java:241] [main] Processing chromosome scaffold396 Processing chromosome scaffold396 INFO [2014-03-08 06:26:49,016] [Preprocessor.java:241] [main] Processing chromosome scaffold39600 Processing chromosome scaffold39600 INFO [2014-03-08 06:26:49,081] [Preprocessor.java:241] [main] Processing chromosome scaffold39620 Processing chromosome scaffold39620 INFO [2014-03-08 06:26:49,105] [Preprocessor.java:241] [main] Processing chromosome scaffold39624 Processing chromosome scaffold39624 INFO [2014-03-08 06:26:49,120] [Preprocessor.java:241] [main] Processing chromosome scaffold39634 Processing chromosome scaffold39634 INFO [2014-03-08 06:26:49,174] [Preprocessor.java:241] [main] Processing chromosome scaffold39640 Processing chromosome scaffold39640 INFO [2014-03-08 06:26:49,193] [Preprocessor.java:241] [main] Processing chromosome scaffold39642 Processing chromosome scaffold39642 INFO [2014-03-08 06:26:49,209] [Preprocessor.java:241] [main] Processing chromosome scaffold39652 Processing chromosome scaffold39652 INFO [2014-03-08 06:26:49,219] [Preprocessor.java:241] [main] Processing chromosome scaffold39688 Processing chromosome scaffold39688 INFO [2014-03-08 06:26:49,262] [Preprocessor.java:241] [main] Processing chromosome scaffold39694 Processing chromosome scaffold39694 INFO [2014-03-08 06:26:49,295] [Preprocessor.java:241] [main] Processing chromosome scaffold39696 Processing chromosome scaffold39696 INFO [2014-03-08 06:26:49,319] [Preprocessor.java:241] [main] Processing chromosome scaffold397 Processing chromosome scaffold397 INFO [2014-03-08 06:26:49,336] [Preprocessor.java:241] [main] Processing chromosome scaffold39712 Processing chromosome scaffold39712 INFO [2014-03-08 06:26:49,357] [Preprocessor.java:241] [main] Processing chromosome scaffold39716 Processing chromosome scaffold39716 INFO [2014-03-08 06:26:49,404] [Preprocessor.java:241] [main] Processing chromosome scaffold39720 Processing chromosome scaffold39720 INFO [2014-03-08 06:26:49,443] [Preprocessor.java:241] [main] Processing chromosome scaffold39724 Processing chromosome scaffold39724 INFO [2014-03-08 06:26:49,478] [Preprocessor.java:241] [main] Processing chromosome scaffold39730 Processing chromosome scaffold39730 INFO [2014-03-08 06:26:49,534] [Preprocessor.java:241] [main] Processing chromosome scaffold39732 Processing chromosome scaffold39732 INFO [2014-03-08 06:26:49,587] [Preprocessor.java:241] [main] Processing chromosome scaffold39740 Processing chromosome scaffold39740 INFO [2014-03-08 06:26:49,644] [Preprocessor.java:241] [main] Processing chromosome scaffold39744 Processing chromosome scaffold39744 INFO [2014-03-08 06:26:49,707] [Preprocessor.java:241] [main] Processing chromosome scaffold39754 Processing chromosome scaffold39754 INFO [2014-03-08 06:26:49,781] [Preprocessor.java:241] [main] Processing chromosome scaffold39758 Processing chromosome scaffold39758 INFO [2014-03-08 06:26:49,838] [Preprocessor.java:241] [main] Processing chromosome scaffold39778 Processing chromosome scaffold39778 INFO [2014-03-08 06:26:49,905] [Preprocessor.java:241] [main] Processing chromosome scaffold39790 Processing chromosome scaffold39790 INFO [2014-03-08 06:26:49,936] [Preprocessor.java:241] [main] Processing chromosome scaffold398 Processing chromosome scaffold398 INFO [2014-03-08 06:26:49,967] [Preprocessor.java:241] [main] Processing chromosome scaffold39800 Processing chromosome scaffold39800 INFO [2014-03-08 06:26:49,992] [Preprocessor.java:241] [main] Processing chromosome scaffold39804 Processing chromosome scaffold39804 INFO [2014-03-08 06:26:50,036] [Preprocessor.java:241] [main] Processing chromosome scaffold39858 Processing chromosome scaffold39858 INFO [2014-03-08 06:26:50,057] [Preprocessor.java:241] [main] Processing chromosome scaffold39878 Processing chromosome scaffold39878 INFO [2014-03-08 06:26:50,090] [Preprocessor.java:241] [main] Processing chromosome scaffold39880 Processing chromosome scaffold39880 INFO [2014-03-08 06:26:50,111] [Preprocessor.java:241] [main] Processing chromosome scaffold39884 Processing chromosome scaffold39884 INFO [2014-03-08 06:26:50,151] [Preprocessor.java:241] [main] Processing chromosome scaffold39894 Processing chromosome scaffold39894 INFO [2014-03-08 06:26:50,186] [Preprocessor.java:241] [main] Processing chromosome scaffold399 Processing chromosome scaffold399 INFO [2014-03-08 06:26:50,248] [Preprocessor.java:241] [main] Processing chromosome scaffold39900 Processing chromosome scaffold39900 INFO [2014-03-08 06:26:50,274] [Preprocessor.java:241] [main] Processing chromosome scaffold39946 Processing chromosome scaffold39946 INFO [2014-03-08 06:26:50,298] [Preprocessor.java:241] [main] Processing chromosome scaffold39958 Processing chromosome scaffold39958 INFO [2014-03-08 06:26:50,320] [Preprocessor.java:241] [main] Processing chromosome scaffold39960 Processing chromosome scaffold39960 INFO [2014-03-08 06:26:50,368] [Preprocessor.java:241] [main] Processing chromosome scaffold39966 Processing chromosome scaffold39966 INFO [2014-03-08 06:26:50,391] [Preprocessor.java:241] [main] Processing chromosome scaffold39972 Processing chromosome scaffold39972 INFO [2014-03-08 06:26:50,408] [Preprocessor.java:241] [main] Processing chromosome scaffold39974 Processing chromosome scaffold39974 INFO [2014-03-08 06:26:50,420] [Preprocessor.java:241] [main] Processing chromosome scaffold39976 Processing chromosome scaffold39976 INFO [2014-03-08 06:26:50,441] [Preprocessor.java:241] [main] Processing chromosome scaffold39984 Processing chromosome scaffold39984 INFO [2014-03-08 06:26:50,453] [Preprocessor.java:241] [main] Processing chromosome scaffold39986 Processing chromosome scaffold39986 INFO [2014-03-08 06:26:50,495] [Preprocessor.java:241] [main] Processing chromosome scaffold39990 Processing chromosome scaffold39990 INFO [2014-03-08 06:26:50,543] [Preprocessor.java:241] [main] Processing chromosome scaffold39998 Processing chromosome scaffold39998 INFO [2014-03-08 06:26:50,578] [Preprocessor.java:241] [main] Processing chromosome scaffold4 Processing chromosome scaffold4 .INFO [2014-03-08 06:26:50,728] [Preprocessor.java:241] [main] Processing chromosome scaffold40 Processing chromosome scaffold40 INFO [2014-03-08 06:26:50,762] [Preprocessor.java:241] [main] Processing chromosome scaffold400 Processing chromosome scaffold400 INFO [2014-03-08 06:26:50,842] [Preprocessor.java:241] [main] Processing chromosome scaffold40002 Processing chromosome scaffold40002 INFO [2014-03-08 06:26:50,887] [Preprocessor.java:241] [main] Processing chromosome scaffold40006 Processing chromosome scaffold40006 INFO [2014-03-08 06:26:50,945] [Preprocessor.java:241] [main] Processing chromosome scaffold40010 Processing chromosome scaffold40010 INFO [2014-03-08 06:26:50,966] [Preprocessor.java:241] [main] Processing chromosome scaffold40016 Processing chromosome scaffold40016 INFO [2014-03-08 06:26:50,993] [Preprocessor.java:241] [main] Processing chromosome scaffold40026 Processing chromosome scaffold40026 INFO [2014-03-08 06:26:51,033] [Preprocessor.java:241] [main] Processing chromosome scaffold40030 Processing chromosome scaffold40030 INFO [2014-03-08 06:26:51,067] [Preprocessor.java:241] [main] Processing chromosome scaffold40038 Processing chromosome scaffold40038 INFO [2014-03-08 06:26:51,126] [Preprocessor.java:241] [main] Processing chromosome scaffold40050 Processing chromosome scaffold40050 INFO [2014-03-08 06:26:51,157] [Preprocessor.java:241] [main] Processing chromosome scaffold40054 Processing chromosome scaffold40054 INFO [2014-03-08 06:26:51,179] [Preprocessor.java:241] [main] Processing chromosome scaffold40068 Processing chromosome scaffold40068 INFO [2014-03-08 06:26:51,197] [Preprocessor.java:241] [main] Processing chromosome scaffold40072 Processing chromosome scaffold40072 INFO [2014-03-08 06:26:51,249] [Preprocessor.java:241] [main] Processing chromosome scaffold40076 Processing chromosome scaffold40076 INFO [2014-03-08 06:26:51,274] [Preprocessor.java:241] [main] Processing chromosome scaffold40080 Processing chromosome scaffold40080 INFO [2014-03-08 06:26:51,291] [Preprocessor.java:241] [main] Processing chromosome scaffold40084 Processing chromosome scaffold40084 INFO [2014-03-08 06:26:51,371] [Preprocessor.java:241] [main] Processing chromosome scaffold40088 Processing chromosome scaffold40088 INFO [2014-03-08 06:26:51,417] [Preprocessor.java:241] [main] Processing chromosome scaffold40094 Processing chromosome scaffold40094 INFO [2014-03-08 06:26:51,481] [Preprocessor.java:241] [main] Processing chromosome scaffold401 Processing chromosome scaffold401 INFO [2014-03-08 06:26:51,534] [Preprocessor.java:241] [main] Processing chromosome scaffold40100 Processing chromosome scaffold40100 INFO [2014-03-08 06:26:51,586] [Preprocessor.java:241] [main] Processing chromosome scaffold40104 Processing chromosome scaffold40104 INFO [2014-03-08 06:26:51,608] [Preprocessor.java:241] [main] Processing chromosome scaffold40106 Processing chromosome scaffold40106 INFO [2014-03-08 06:26:51,662] [Preprocessor.java:241] [main] Processing chromosome scaffold40114 Processing chromosome scaffold40114 INFO [2014-03-08 06:26:51,706] [Preprocessor.java:241] [main] Processing chromosome scaffold40120 Processing chromosome scaffold40120 INFO [2014-03-08 06:26:51,740] [Preprocessor.java:241] [main] Processing chromosome scaffold40134 Processing chromosome scaffold40134 INFO [2014-03-08 06:26:51,774] [Preprocessor.java:241] [main] Processing chromosome scaffold40140 Processing chromosome scaffold40140 INFO [2014-03-08 06:26:51,797] [Preprocessor.java:241] [main] Processing chromosome scaffold40150 Processing chromosome scaffold40150 INFO [2014-03-08 06:26:51,844] [Preprocessor.java:241] [main] Processing chromosome scaffold40154 Processing chromosome scaffold40154 INFO [2014-03-08 06:26:51,877] [Preprocessor.java:241] [main] Processing chromosome scaffold40156 Processing chromosome scaffold40156 INFO [2014-03-08 06:26:51,915] [Preprocessor.java:241] [main] Processing chromosome scaffold40162 Processing chromosome scaffold40162 INFO [2014-03-08 06:26:51,941] [Preprocessor.java:241] [main] Processing chromosome scaffold40164 Processing chromosome scaffold40164 INFO [2014-03-08 06:26:51,954] [Preprocessor.java:241] [main] Processing chromosome scaffold40172 Processing chromosome scaffold40172 INFO [2014-03-08 06:26:51,977] [Preprocessor.java:241] [main] Processing chromosome scaffold40178 Processing chromosome scaffold40178 INFO [2014-03-08 06:26:51,991] [Preprocessor.java:241] [main] Processing chromosome scaffold40182 Processing chromosome scaffold40182 INFO [2014-03-08 06:26:52,073] [Preprocessor.java:241] [main] Processing chromosome scaffold40184 Processing chromosome scaffold40184 INFO [2014-03-08 06:26:52,121] [Preprocessor.java:241] [main] Processing chromosome scaffold40186 Processing chromosome scaffold40186 INFO [2014-03-08 06:26:52,161] [Preprocessor.java:241] [main] Processing chromosome scaffold40194 Processing chromosome scaffold40194 INFO [2014-03-08 06:26:52,190] [Preprocessor.java:241] [main] Processing chromosome scaffold40196 Processing chromosome scaffold40196 INFO [2014-03-08 06:26:52,204] [Preprocessor.java:241] [main] Processing chromosome scaffold402 Processing chromosome scaffold402 INFO [2014-03-08 06:26:52,296] [Preprocessor.java:241] [main] Processing chromosome scaffold40208 Processing chromosome scaffold40208 INFO [2014-03-08 06:26:52,324] [Preprocessor.java:241] [main] Processing chromosome scaffold40216 Processing chromosome scaffold40216 INFO [2014-03-08 06:26:52,332] [Preprocessor.java:241] [main] Processing chromosome scaffold40224 Processing chromosome scaffold40224 INFO [2014-03-08 06:26:52,365] [Preprocessor.java:241] [main] Processing chromosome scaffold40226 Processing chromosome scaffold40226 INFO [2014-03-08 06:26:52,398] [Preprocessor.java:241] [main] Processing chromosome scaffold40230 Processing chromosome scaffold40230 INFO [2014-03-08 06:26:52,452] [Preprocessor.java:241] [main] Processing chromosome scaffold40234 Processing chromosome scaffold40234 INFO [2014-03-08 06:26:52,502] [Preprocessor.java:241] [main] Processing chromosome scaffold40246 Processing chromosome scaffold40246 INFO [2014-03-08 06:26:52,551] [Preprocessor.java:241] [main] Processing chromosome scaffold40254 Processing chromosome scaffold40254 INFO [2014-03-08 06:26:52,600] [Preprocessor.java:241] [main] Processing chromosome scaffold40264 Processing chromosome scaffold40264 INFO [2014-03-08 06:26:52,645] [Preprocessor.java:241] [main] Processing chromosome scaffold40270 Processing chromosome scaffold40270 INFO [2014-03-08 06:26:52,673] [Preprocessor.java:241] [main] Processing chromosome scaffold40282 Processing chromosome scaffold40282 INFO [2014-03-08 06:26:52,710] [Preprocessor.java:241] [main] Processing chromosome scaffold40290 Processing chromosome scaffold40290 INFO [2014-03-08 06:26:52,736] [Preprocessor.java:241] [main] Processing chromosome scaffold403 Processing chromosome scaffold403 INFO [2014-03-08 06:26:52,784] [Preprocessor.java:241] [main] Processing chromosome scaffold40342 Processing chromosome scaffold40342 INFO [2014-03-08 06:26:52,790] [Preprocessor.java:241] [main] Processing chromosome scaffold40346 Processing chromosome scaffold40346 INFO [2014-03-08 06:26:52,821] [Preprocessor.java:241] [main] Processing chromosome scaffold40366 Processing chromosome scaffold40366 INFO [2014-03-08 06:26:52,839] [Preprocessor.java:241] [main] Processing chromosome scaffold40368 Processing chromosome scaffold40368 INFO [2014-03-08 06:26:52,857] [Preprocessor.java:241] [main] Processing chromosome scaffold40380 Processing chromosome scaffold40380 INFO [2014-03-08 06:26:52,900] [Preprocessor.java:241] [main] Processing chromosome scaffold40388 Processing chromosome scaffold40388 INFO [2014-03-08 06:26:52,957] [Preprocessor.java:241] [main] Processing chromosome scaffold40390 Processing chromosome scaffold40390 INFO [2014-03-08 06:26:53,015] [Preprocessor.java:241] [main] Processing chromosome scaffold40396 Processing chromosome scaffold40396 INFO [2014-03-08 06:26:53,031] [Preprocessor.java:241] [main] Processing chromosome scaffold404 Processing chromosome scaffold404 INFO [2014-03-08 06:26:53,093] [Preprocessor.java:241] [main] Processing chromosome scaffold40404 Processing chromosome scaffold40404 INFO [2014-03-08 06:26:53,127] [Preprocessor.java:241] [main] Processing chromosome scaffold40406 Processing chromosome scaffold40406 INFO [2014-03-08 06:26:53,145] [Preprocessor.java:241] [main] Processing chromosome scaffold40412 Processing chromosome scaffold40412 INFO [2014-03-08 06:26:53,178] [Preprocessor.java:241] [main] Processing chromosome scaffold40420 Processing chromosome scaffold40420 INFO [2014-03-08 06:26:53,221] [Preprocessor.java:241] [main] Processing chromosome scaffold40424 Processing chromosome scaffold40424 INFO [2014-03-08 06:26:53,242] [Preprocessor.java:241] [main] Processing chromosome scaffold40438 Processing chromosome scaffold40438 INFO [2014-03-08 06:26:53,267] [Preprocessor.java:241] [main] Processing chromosome scaffold40440 Processing chromosome scaffold40440 INFO [2014-03-08 06:26:53,302] [Preprocessor.java:241] [main] Processing chromosome scaffold40442 Processing chromosome scaffold40442 INFO [2014-03-08 06:26:53,362] [Preprocessor.java:241] [main] Processing chromosome scaffold40454 Processing chromosome scaffold40454 INFO [2014-03-08 06:26:53,392] [Preprocessor.java:241] [main] Processing chromosome scaffold40456 Processing chromosome scaffold40456 INFO [2014-03-08 06:26:53,448] [Preprocessor.java:241] [main] Processing chromosome scaffold40476 Processing chromosome scaffold40476 INFO [2014-03-08 06:26:53,484] [Preprocessor.java:241] [main] Processing chromosome scaffold40492 Processing chromosome scaffold40492 INFO [2014-03-08 06:26:53,498] [Preprocessor.java:241] [main] Processing chromosome scaffold40512 Processing chromosome scaffold40512 INFO [2014-03-08 06:26:53,534] [Preprocessor.java:241] [main] Processing chromosome scaffold40514 Processing chromosome scaffold40514 INFO [2014-03-08 06:26:53,574] [Preprocessor.java:241] [main] Processing chromosome scaffold40526 Processing chromosome scaffold40526 INFO [2014-03-08 06:26:53,615] [Preprocessor.java:241] [main] Processing chromosome scaffold40534 Processing chromosome scaffold40534 INFO [2014-03-08 06:26:53,681] [Preprocessor.java:241] [main] Processing chromosome scaffold40548 Processing chromosome scaffold40548 INFO [2014-03-08 06:26:53,729] [Preprocessor.java:241] [main] Processing chromosome scaffold40556 Processing chromosome scaffold40556 INFO [2014-03-08 06:26:53,755] [Preprocessor.java:241] [main] Processing chromosome scaffold40560 Processing chromosome scaffold40560 INFO [2014-03-08 06:26:53,769] [Preprocessor.java:241] [main] Processing chromosome scaffold40564 Processing chromosome scaffold40564 INFO [2014-03-08 06:26:53,801] [Preprocessor.java:241] [main] Processing chromosome scaffold40584 Processing chromosome scaffold40584 INFO [2014-03-08 06:26:53,820] [Preprocessor.java:241] [main] Processing chromosome scaffold40586 Processing chromosome scaffold40586 INFO [2014-03-08 06:26:53,835] [Preprocessor.java:241] [main] Processing chromosome scaffold40598 Processing chromosome scaffold40598 INFO [2014-03-08 06:26:53,874] [Preprocessor.java:241] [main] Processing chromosome scaffold406 Processing chromosome scaffold406 INFO [2014-03-08 06:26:53,981] [Preprocessor.java:241] [main] Processing chromosome scaffold40606 Processing chromosome scaffold40606 INFO [2014-03-08 06:26:54,008] [Preprocessor.java:241] [main] Processing chromosome scaffold40610 Processing chromosome scaffold40610 INFO [2014-03-08 06:26:54,018] [Preprocessor.java:241] [main] Processing chromosome scaffold40612 Processing chromosome scaffold40612 INFO [2014-03-08 06:26:54,072] [Preprocessor.java:241] [main] Processing chromosome scaffold40614 Processing chromosome scaffold40614 INFO [2014-03-08 06:26:54,108] [Preprocessor.java:241] [main] Processing chromosome scaffold40624 Processing chromosome scaffold40624 INFO [2014-03-08 06:26:54,121] [Preprocessor.java:241] [main] Processing chromosome scaffold40634 Processing chromosome scaffold40634 INFO [2014-03-08 06:26:54,178] [Preprocessor.java:241] [main] Processing chromosome scaffold40638 Processing chromosome scaffold40638 INFO [2014-03-08 06:26:54,211] [Preprocessor.java:241] [main] Processing chromosome scaffold40644 Processing chromosome scaffold40644 INFO [2014-03-08 06:26:54,238] [Preprocessor.java:241] [main] Processing chromosome scaffold40658 Processing chromosome scaffold40658 INFO [2014-03-08 06:26:54,307] [Preprocessor.java:241] [main] Processing chromosome scaffold40664 Processing chromosome scaffold40664 INFO [2014-03-08 06:26:54,381] [Preprocessor.java:241] [main] Processing chromosome scaffold40680 Processing chromosome scaffold40680 INFO [2014-03-08 06:26:54,418] [Preprocessor.java:241] [main] Processing chromosome scaffold40690 Processing chromosome scaffold40690 INFO [2014-03-08 06:26:54,443] [Preprocessor.java:241] [main] Processing chromosome scaffold407 Processing chromosome scaffold407 INFO [2014-03-08 06:26:54,484] [Preprocessor.java:241] [main] Processing chromosome scaffold40702 Processing chromosome scaffold40702 INFO [2014-03-08 06:26:54,513] [Preprocessor.java:241] [main] Processing chromosome scaffold40740 Processing chromosome scaffold40740 INFO [2014-03-08 06:26:54,599] [Preprocessor.java:241] [main] Processing chromosome scaffold40744 Processing chromosome scaffold40744 INFO [2014-03-08 06:26:54,641] [Preprocessor.java:241] [main] Processing chromosome scaffold40752 Processing chromosome scaffold40752 INFO [2014-03-08 06:26:54,647] [Preprocessor.java:241] [main] Processing chromosome scaffold40786 Processing chromosome scaffold40786 INFO [2014-03-08 06:26:54,668] [Preprocessor.java:241] [main] Processing chromosome scaffold40794 Processing chromosome scaffold40794 INFO [2014-03-08 06:26:54,684] [Preprocessor.java:241] [main] Processing chromosome scaffold408 Processing chromosome scaffold408 INFO [2014-03-08 06:26:54,851] [Preprocessor.java:241] [main] Processing chromosome scaffold40808 Processing chromosome scaffold40808 INFO [2014-03-08 06:26:54,874] [Preprocessor.java:241] [main] Processing chromosome scaffold40820 Processing chromosome scaffold40820 INFO [2014-03-08 06:26:54,976] [Preprocessor.java:241] [main] Processing chromosome scaffold40822 Processing chromosome scaffold40822 INFO [2014-03-08 06:26:54,992] [Preprocessor.java:241] [main] Processing chromosome scaffold40828 Processing chromosome scaffold40828 INFO [2014-03-08 06:26:55,008] [Preprocessor.java:241] [main] Processing chromosome scaffold40832 Processing chromosome scaffold40832 INFO [2014-03-08 06:26:55,073] [Preprocessor.java:241] [main] Processing chromosome scaffold40836 Processing chromosome scaffold40836 INFO [2014-03-08 06:26:55,124] [Preprocessor.java:241] [main] Processing chromosome scaffold40856 Processing chromosome scaffold40856 INFO [2014-03-08 06:26:55,153] [Preprocessor.java:241] [main] Processing chromosome scaffold40868 Processing chromosome scaffold40868 INFO [2014-03-08 06:26:55,174] [Preprocessor.java:241] [main] Processing chromosome scaffold40874 Processing chromosome scaffold40874 INFO [2014-03-08 06:26:55,238] [Preprocessor.java:241] [main] Processing chromosome scaffold40894 Processing chromosome scaffold40894 INFO [2014-03-08 06:26:55,294] [Preprocessor.java:241] [main] Processing chromosome scaffold409 Processing chromosome scaffold409 INFO [2014-03-08 06:26:55,328] [Preprocessor.java:241] [main] Processing chromosome scaffold40910 Processing chromosome scaffold40910 INFO [2014-03-08 06:26:55,397] [Preprocessor.java:241] [main] Processing chromosome scaffold40916 Processing chromosome scaffold40916 INFO [2014-03-08 06:26:55,504] [Preprocessor.java:241] [main] Processing chromosome scaffold40928 Processing chromosome scaffold40928 INFO [2014-03-08 06:26:55,545] [Preprocessor.java:241] [main] Processing chromosome scaffold40938 Processing chromosome scaffold40938 INFO [2014-03-08 06:26:55,583] [Preprocessor.java:241] [main] Processing chromosome scaffold40948 Processing chromosome scaffold40948 INFO [2014-03-08 06:26:55,637] [Preprocessor.java:241] [main] Processing chromosome scaffold40950 Processing chromosome scaffold40950 INFO [2014-03-08 06:26:55,690] [Preprocessor.java:241] [main] Processing chromosome scaffold40952 Processing chromosome scaffold40952 INFO [2014-03-08 06:26:55,712] [Preprocessor.java:241] [main] Processing chromosome scaffold40960 Processing chromosome scaffold40960 INFO [2014-03-08 06:26:55,827] [Preprocessor.java:241] [main] Processing chromosome scaffold40974 Processing chromosome scaffold40974 INFO [2014-03-08 06:26:55,841] [Preprocessor.java:241] [main] Processing chromosome scaffold40980 Processing chromosome scaffold40980 INFO [2014-03-08 06:26:55,874] [Preprocessor.java:241] [main] Processing chromosome scaffold40982 Processing chromosome scaffold40982 INFO [2014-03-08 06:26:55,910] [Preprocessor.java:241] [main] Processing chromosome scaffold40988 Processing chromosome scaffold40988 INFO [2014-03-08 06:26:55,930] [Preprocessor.java:241] [main] Processing chromosome scaffold40994 Processing chromosome scaffold40994 INFO [2014-03-08 06:26:55,950] [Preprocessor.java:241] [main] Processing chromosome scaffold410 Processing chromosome scaffold410 INFO [2014-03-08 06:26:56,078] [Preprocessor.java:241] [main] Processing chromosome scaffold41008 Processing chromosome scaffold41008 INFO [2014-03-08 06:26:56,100] [Preprocessor.java:241] [main] Processing chromosome scaffold41014 Processing chromosome scaffold41014 INFO [2014-03-08 06:26:56,110] [Preprocessor.java:241] [main] Processing chromosome scaffold41022 Processing chromosome scaffold41022 INFO [2014-03-08 06:26:56,136] [Preprocessor.java:241] [main] Processing chromosome scaffold41034 Processing chromosome scaffold41034 .INFO [2014-03-08 06:26:56,222] [Preprocessor.java:241] [main] Processing chromosome scaffold41054 Processing chromosome scaffold41054 INFO [2014-03-08 06:26:56,240] [Preprocessor.java:241] [main] Processing chromosome scaffold41064 Processing chromosome scaffold41064 INFO [2014-03-08 06:26:56,301] [Preprocessor.java:241] [main] Processing chromosome scaffold41082 Processing chromosome scaffold41082 INFO [2014-03-08 06:26:56,342] [Preprocessor.java:241] [main] Processing chromosome scaffold41086 Processing chromosome scaffold41086 INFO [2014-03-08 06:26:56,373] [Preprocessor.java:241] [main] Processing chromosome scaffold41090 Processing chromosome scaffold41090 INFO [2014-03-08 06:26:56,393] [Preprocessor.java:241] [main] Processing chromosome scaffold411 Processing chromosome scaffold411 INFO [2014-03-08 06:26:56,410] [Preprocessor.java:241] [main] Processing chromosome scaffold41136 Processing chromosome scaffold41136 INFO [2014-03-08 06:26:56,460] [Preprocessor.java:241] [main] Processing chromosome scaffold41162 Processing chromosome scaffold41162 INFO [2014-03-08 06:26:56,471] [Preprocessor.java:241] [main] Processing chromosome scaffold41164 Processing chromosome scaffold41164 INFO [2014-03-08 06:26:56,528] [Preprocessor.java:241] [main] Processing chromosome scaffold41174 Processing chromosome scaffold41174 INFO [2014-03-08 06:26:56,576] [Preprocessor.java:241] [main] Processing chromosome scaffold412 Processing chromosome scaffold412 INFO [2014-03-08 06:26:56,669] [Preprocessor.java:241] [main] Processing chromosome scaffold41206 Processing chromosome scaffold41206 INFO [2014-03-08 06:26:56,701] [Preprocessor.java:241] [main] Processing chromosome scaffold41210 Processing chromosome scaffold41210 INFO [2014-03-08 06:26:56,763] [Preprocessor.java:241] [main] Processing chromosome scaffold41212 Processing chromosome scaffold41212 INFO [2014-03-08 06:26:56,797] [Preprocessor.java:241] [main] Processing chromosome scaffold41214 Processing chromosome scaffold41214 INFO [2014-03-08 06:26:56,823] [Preprocessor.java:241] [main] Processing chromosome scaffold41220 Processing chromosome scaffold41220 INFO [2014-03-08 06:26:56,866] [Preprocessor.java:241] [main] Processing chromosome scaffold41228 Processing chromosome scaffold41228 INFO [2014-03-08 06:26:56,899] [Preprocessor.java:241] [main] Processing chromosome scaffold41242 Processing chromosome scaffold41242 INFO [2014-03-08 06:26:56,937] [Preprocessor.java:241] [main] Processing chromosome scaffold41248 Processing chromosome scaffold41248 INFO [2014-03-08 06:26:56,964] [Preprocessor.java:241] [main] Processing chromosome scaffold41296 Processing chromosome scaffold41296 INFO [2014-03-08 06:26:57,024] [Preprocessor.java:241] [main] Processing chromosome scaffold413 Processing chromosome scaffold413 INFO [2014-03-08 06:26:57,144] [Preprocessor.java:241] [main] Processing chromosome scaffold41304 Processing chromosome scaffold41304 INFO [2014-03-08 06:26:57,201] [Preprocessor.java:241] [main] Processing chromosome scaffold41312 Processing chromosome scaffold41312 INFO [2014-03-08 06:26:57,232] [Preprocessor.java:241] [main] Processing chromosome scaffold41316 Processing chromosome scaffold41316 INFO [2014-03-08 06:26:57,320] [Preprocessor.java:241] [main] Processing chromosome scaffold41318 Processing chromosome scaffold41318 INFO [2014-03-08 06:26:57,329] [Preprocessor.java:241] [main] Processing chromosome scaffold41344 Processing chromosome scaffold41344 INFO [2014-03-08 06:26:57,351] [Preprocessor.java:241] [main] Processing chromosome scaffold41346 Processing chromosome scaffold41346 INFO [2014-03-08 06:26:57,378] [Preprocessor.java:241] [main] Processing chromosome scaffold41356 Processing chromosome scaffold41356 INFO [2014-03-08 06:26:57,398] [Preprocessor.java:241] [main] Processing chromosome scaffold41358 Processing chromosome scaffold41358 INFO [2014-03-08 06:26:57,466] [Preprocessor.java:241] [main] Processing chromosome scaffold41372 Processing chromosome scaffold41372 INFO [2014-03-08 06:26:57,485] [Preprocessor.java:241] [main] Processing chromosome scaffold41380 Processing chromosome scaffold41380 INFO [2014-03-08 06:26:57,523] [Preprocessor.java:241] [main] Processing chromosome scaffold41388 Processing chromosome scaffold41388 INFO [2014-03-08 06:26:57,545] [Preprocessor.java:241] [main] Processing chromosome scaffold41390 Processing chromosome scaffold41390 INFO [2014-03-08 06:26:57,586] [Preprocessor.java:241] [main] Processing chromosome scaffold41398 Processing chromosome scaffold41398 INFO [2014-03-08 06:26:57,597] [Preprocessor.java:241] [main] Processing chromosome scaffold41400 Processing chromosome scaffold41400 INFO [2014-03-08 06:26:57,631] [Preprocessor.java:241] [main] Processing chromosome scaffold41416 Processing chromosome scaffold41416 INFO [2014-03-08 06:26:57,685] [Preprocessor.java:241] [main] Processing chromosome scaffold41436 Processing chromosome scaffold41436 INFO [2014-03-08 06:26:57,715] [Preprocessor.java:241] [main] Processing chromosome scaffold41442 Processing chromosome scaffold41442 INFO [2014-03-08 06:26:57,729] [Preprocessor.java:241] [main] Processing chromosome scaffold41448 Processing chromosome scaffold41448 INFO [2014-03-08 06:26:57,760] [Preprocessor.java:241] [main] Processing chromosome scaffold41452 Processing chromosome scaffold41452 INFO [2014-03-08 06:26:57,794] [Preprocessor.java:241] [main] Processing chromosome scaffold41466 Processing chromosome scaffold41466 INFO [2014-03-08 06:26:57,806] [Preprocessor.java:241] [main] Processing chromosome scaffold41470 Processing chromosome scaffold41470 INFO [2014-03-08 06:26:57,818] [Preprocessor.java:241] [main] Processing chromosome scaffold41472 Processing chromosome scaffold41472 INFO [2014-03-08 06:26:57,860] [Preprocessor.java:241] [main] Processing chromosome scaffold41480 Processing chromosome scaffold41480 INFO [2014-03-08 06:26:57,906] [Preprocessor.java:241] [main] Processing chromosome scaffold415 Processing chromosome scaffold415 INFO [2014-03-08 06:26:57,923] [Preprocessor.java:241] [main] Processing chromosome scaffold41502 Processing chromosome scaffold41502 INFO [2014-03-08 06:26:57,979] [Preprocessor.java:241] [main] Processing chromosome scaffold41522 Processing chromosome scaffold41522 INFO [2014-03-08 06:26:58,025] [Preprocessor.java:241] [main] Processing chromosome scaffold41530 Processing chromosome scaffold41530 INFO [2014-03-08 06:26:58,088] [Preprocessor.java:241] [main] Processing chromosome scaffold41534 Processing chromosome scaffold41534 INFO [2014-03-08 06:26:58,134] [Preprocessor.java:241] [main] Processing chromosome scaffold41540 Processing chromosome scaffold41540 INFO [2014-03-08 06:26:58,188] [Preprocessor.java:241] [main] Processing chromosome scaffold41546 Processing chromosome scaffold41546 INFO [2014-03-08 06:26:58,226] [Preprocessor.java:241] [main] Processing chromosome scaffold41550 Processing chromosome scaffold41550 INFO [2014-03-08 06:26:58,259] [Preprocessor.java:241] [main] Processing chromosome scaffold41560 Processing chromosome scaffold41560 INFO [2014-03-08 06:26:58,280] [Preprocessor.java:241] [main] Processing chromosome scaffold41568 Processing chromosome scaffold41568 INFO [2014-03-08 06:26:58,301] [Preprocessor.java:241] [main] Processing chromosome scaffold41572 Processing chromosome scaffold41572 INFO [2014-03-08 06:26:58,357] [Preprocessor.java:241] [main] Processing chromosome scaffold41588 Processing chromosome scaffold41588 INFO [2014-03-08 06:26:58,424] [Preprocessor.java:241] [main] Processing chromosome scaffold41594 Processing chromosome scaffold41594 INFO [2014-03-08 06:26:58,445] [Preprocessor.java:241] [main] Processing chromosome scaffold41598 Processing chromosome scaffold41598 INFO [2014-03-08 06:26:58,509] [Preprocessor.java:241] [main] Processing chromosome scaffold416 Processing chromosome scaffold416 INFO [2014-03-08 06:26:58,564] [Preprocessor.java:241] [main] Processing chromosome scaffold41604 Processing chromosome scaffold41604 INFO [2014-03-08 06:26:58,585] [Preprocessor.java:241] [main] Processing chromosome scaffold41616 Processing chromosome scaffold41616 INFO [2014-03-08 06:26:58,621] [Preprocessor.java:241] [main] Processing chromosome scaffold41628 Processing chromosome scaffold41628 INFO [2014-03-08 06:26:58,660] [Preprocessor.java:241] [main] Processing chromosome scaffold41636 Processing chromosome scaffold41636 INFO [2014-03-08 06:26:58,674] [Preprocessor.java:241] [main] Processing chromosome scaffold41648 Processing chromosome scaffold41648 INFO [2014-03-08 06:26:58,685] [Preprocessor.java:241] [main] Processing chromosome scaffold41650 Processing chromosome scaffold41650 INFO [2014-03-08 06:26:58,805] [Preprocessor.java:241] [main] Processing chromosome scaffold41652 Processing chromosome scaffold41652 INFO [2014-03-08 06:26:58,921] [Preprocessor.java:241] [main] Processing chromosome scaffold41656 Processing chromosome scaffold41656 INFO [2014-03-08 06:26:58,955] [Preprocessor.java:241] [main] Processing chromosome scaffold41660 Processing chromosome scaffold41660 INFO [2014-03-08 06:26:58,998] [Preprocessor.java:241] [main] Processing chromosome scaffold41664 Processing chromosome scaffold41664 INFO [2014-03-08 06:26:59,032] [Preprocessor.java:241] [main] Processing chromosome scaffold41666 Processing chromosome scaffold41666 INFO [2014-03-08 06:26:59,087] [Preprocessor.java:241] [main] Processing chromosome scaffold41684 Processing chromosome scaffold41684 INFO [2014-03-08 06:26:59,115] [Preprocessor.java:241] [main] Processing chromosome scaffold417 Processing chromosome scaffold417 INFO [2014-03-08 06:26:59,131] [Preprocessor.java:241] [main] Processing chromosome scaffold41700 Processing chromosome scaffold41700 INFO [2014-03-08 06:26:59,155] [Preprocessor.java:241] [main] Processing chromosome scaffold41722 Processing chromosome scaffold41722 INFO [2014-03-08 06:26:59,208] [Preprocessor.java:241] [main] Processing chromosome scaffold41730 Processing chromosome scaffold41730 INFO [2014-03-08 06:26:59,275] [Preprocessor.java:241] [main] Processing chromosome scaffold41732 Processing chromosome scaffold41732 INFO [2014-03-08 06:26:59,347] [Preprocessor.java:241] [main] Processing chromosome scaffold41740 Processing chromosome scaffold41740 INFO [2014-03-08 06:26:59,380] [Preprocessor.java:241] [main] Processing chromosome scaffold41744 Processing chromosome scaffold41744 INFO [2014-03-08 06:26:59,411] [Preprocessor.java:241] [main] Processing chromosome scaffold41754 Processing chromosome scaffold41754 INFO [2014-03-08 06:26:59,441] [Preprocessor.java:241] [main] Processing chromosome scaffold41762 Processing chromosome scaffold41762 INFO [2014-03-08 06:26:59,457] [Preprocessor.java:241] [main] Processing chromosome scaffold41766 Processing chromosome scaffold41766 INFO [2014-03-08 06:26:59,485] [Preprocessor.java:241] [main] Processing chromosome scaffold41772 Processing chromosome scaffold41772 INFO [2014-03-08 06:26:59,513] [Preprocessor.java:241] [main] Processing chromosome scaffold41776 Processing chromosome scaffold41776 INFO [2014-03-08 06:26:59,527] [Preprocessor.java:241] [main] Processing chromosome scaffold41786 Processing chromosome scaffold41786 INFO [2014-03-08 06:26:59,553] [Preprocessor.java:241] [main] Processing chromosome scaffold41792 Processing chromosome scaffold41792 INFO [2014-03-08 06:26:59,582] [Preprocessor.java:241] [main] Processing chromosome scaffold41794 Processing chromosome scaffold41794 INFO [2014-03-08 06:26:59,600] [Preprocessor.java:241] [main] Processing chromosome scaffold41798 Processing chromosome scaffold41798 INFO [2014-03-08 06:26:59,621] [Preprocessor.java:241] [main] Processing chromosome scaffold418 Processing chromosome scaffold418 INFO [2014-03-08 06:26:59,686] [Preprocessor.java:241] [main] Processing chromosome scaffold41806 Processing chromosome scaffold41806 INFO [2014-03-08 06:26:59,729] [Preprocessor.java:241] [main] Processing chromosome scaffold41812 Processing chromosome scaffold41812 INFO [2014-03-08 06:26:59,783] [Preprocessor.java:241] [main] Processing chromosome scaffold41816 Processing chromosome scaffold41816 INFO [2014-03-08 06:26:59,817] [Preprocessor.java:241] [main] Processing chromosome scaffold41824 Processing chromosome scaffold41824 INFO [2014-03-08 06:26:59,879] [Preprocessor.java:241] [main] Processing chromosome scaffold41828 Processing chromosome scaffold41828 INFO [2014-03-08 06:26:59,953] [Preprocessor.java:241] [main] Processing chromosome scaffold41832 Processing chromosome scaffold41832 INFO [2014-03-08 06:27:00,049] [Preprocessor.java:241] [main] Processing chromosome scaffold41834 Processing chromosome scaffold41834 INFO [2014-03-08 06:27:00,077] [Preprocessor.java:241] [main] Processing chromosome scaffold41852 Processing chromosome scaffold41852 INFO [2014-03-08 06:27:00,124] [Preprocessor.java:241] [main] Processing chromosome scaffold41858 Processing chromosome scaffold41858 INFO [2014-03-08 06:27:00,219] [Preprocessor.java:241] [main] Processing chromosome scaffold41876 Processing chromosome scaffold41876 INFO [2014-03-08 06:27:00,277] [Preprocessor.java:241] [main] Processing chromosome scaffold41882 Processing chromosome scaffold41882 INFO [2014-03-08 06:27:00,297] [Preprocessor.java:241] [main] Processing chromosome scaffold41884 Processing chromosome scaffold41884 INFO [2014-03-08 06:27:00,335] [Preprocessor.java:241] [main] Processing chromosome scaffold41890 Processing chromosome scaffold41890 INFO [2014-03-08 06:27:00,405] [Preprocessor.java:241] [main] Processing chromosome scaffold41896 Processing chromosome scaffold41896 INFO [2014-03-08 06:27:00,485] [Preprocessor.java:241] [main] Processing chromosome scaffold41898 Processing chromosome scaffold41898 INFO [2014-03-08 06:27:00,535] [Preprocessor.java:241] [main] Processing chromosome scaffold419 Processing chromosome scaffold419 .INFO [2014-03-08 06:27:00,876] [Preprocessor.java:241] [main] Processing chromosome scaffold41900 Processing chromosome scaffold41900 INFO [2014-03-08 06:27:00,925] [Preprocessor.java:241] [main] Processing chromosome scaffold41902 Processing chromosome scaffold41902 INFO [2014-03-08 06:27:00,971] [Preprocessor.java:241] [main] Processing chromosome scaffold41928 Processing chromosome scaffold41928 INFO [2014-03-08 06:27:00,983] [Preprocessor.java:241] [main] Processing chromosome scaffold41948 Processing chromosome scaffold41948 INFO [2014-03-08 06:27:01,023] [Preprocessor.java:241] [main] Processing chromosome scaffold41954 Processing chromosome scaffold41954 INFO [2014-03-08 06:27:01,078] [Preprocessor.java:241] [main] Processing chromosome scaffold41968 Processing chromosome scaffold41968 INFO [2014-03-08 06:27:01,152] [Preprocessor.java:241] [main] Processing chromosome scaffold41970 Processing chromosome scaffold41970 INFO [2014-03-08 06:27:01,209] [Preprocessor.java:241] [main] Processing chromosome scaffold41972 Processing chromosome scaffold41972 INFO [2014-03-08 06:27:01,252] [Preprocessor.java:241] [main] Processing chromosome scaffold41974 Processing chromosome scaffold41974 INFO [2014-03-08 06:27:01,329] [Preprocessor.java:241] [main] Processing chromosome scaffold41982 Processing chromosome scaffold41982 INFO [2014-03-08 06:27:01,390] [Preprocessor.java:241] [main] Processing chromosome scaffold41988 Processing chromosome scaffold41988 INFO [2014-03-08 06:27:01,435] [Preprocessor.java:241] [main] Processing chromosome scaffold41994 Processing chromosome scaffold41994 INFO [2014-03-08 06:27:01,552] [Preprocessor.java:241] [main] Processing chromosome scaffold41998 Processing chromosome scaffold41998 INFO [2014-03-08 06:27:01,608] [Preprocessor.java:241] [main] Processing chromosome scaffold42 Processing chromosome scaffold42 INFO [2014-03-08 06:27:01,732] [Preprocessor.java:241] [main] Processing chromosome scaffold420 Processing chromosome scaffold420 INFO [2014-03-08 06:27:01,739] [Preprocessor.java:241] [main] Processing chromosome scaffold42022 Processing chromosome scaffold42022 INFO [2014-03-08 06:27:01,765] [Preprocessor.java:241] [main] Processing chromosome scaffold42030 Processing chromosome scaffold42030 INFO [2014-03-08 06:27:01,814] [Preprocessor.java:241] [main] Processing chromosome scaffold42032 Processing chromosome scaffold42032 INFO [2014-03-08 06:27:01,858] [Preprocessor.java:241] [main] Processing chromosome scaffold42040 Processing chromosome scaffold42040 INFO [2014-03-08 06:27:01,957] [Preprocessor.java:241] [main] Processing chromosome scaffold42046 Processing chromosome scaffold42046 INFO [2014-03-08 06:27:02,036] [Preprocessor.java:241] [main] Processing chromosome scaffold42048 Processing chromosome scaffold42048 INFO [2014-03-08 06:27:02,085] [Preprocessor.java:241] [main] Processing chromosome scaffold42060 Processing chromosome scaffold42060 INFO [2014-03-08 06:27:02,119] [Preprocessor.java:241] [main] Processing chromosome scaffold42062 Processing chromosome scaffold42062 INFO [2014-03-08 06:27:02,166] [Preprocessor.java:241] [main] Processing chromosome scaffold42070 Processing chromosome scaffold42070 INFO [2014-03-08 06:27:02,199] [Preprocessor.java:241] [main] Processing chromosome scaffold42076 Processing chromosome scaffold42076 INFO [2014-03-08 06:27:02,223] [Preprocessor.java:241] [main] Processing chromosome scaffold42086 Processing chromosome scaffold42086 INFO [2014-03-08 06:27:02,244] [Preprocessor.java:241] [main] Processing chromosome scaffold42090 Processing chromosome scaffold42090 INFO [2014-03-08 06:27:02,346] [Preprocessor.java:241] [main] Processing chromosome scaffold42096 Processing chromosome scaffold42096 INFO [2014-03-08 06:27:02,397] [Preprocessor.java:241] [main] Processing chromosome scaffold421 Processing chromosome scaffold421 INFO [2014-03-08 06:27:02,459] [Preprocessor.java:241] [main] Processing chromosome scaffold42112 Processing chromosome scaffold42112 INFO [2014-03-08 06:27:02,516] [Preprocessor.java:241] [main] Processing chromosome scaffold42124 Processing chromosome scaffold42124 INFO [2014-03-08 06:27:02,636] [Preprocessor.java:241] [main] Processing chromosome scaffold42128 Processing chromosome scaffold42128 INFO [2014-03-08 06:27:02,717] [Preprocessor.java:241] [main] Processing chromosome scaffold42130 Processing chromosome scaffold42130 INFO [2014-03-08 06:27:02,800] [Preprocessor.java:241] [main] Processing chromosome scaffold42144 Processing chromosome scaffold42144 INFO [2014-03-08 06:27:02,848] [Preprocessor.java:241] [main] Processing chromosome scaffold42158 Processing chromosome scaffold42158 INFO [2014-03-08 06:27:02,908] [Preprocessor.java:241] [main] Processing chromosome scaffold42164 Processing chromosome scaffold42164 INFO [2014-03-08 06:27:02,990] [Preprocessor.java:241] [main] Processing chromosome scaffold42166 Processing chromosome scaffold42166 INFO [2014-03-08 06:27:03,031] [Preprocessor.java:241] [main] Processing chromosome scaffold42172 Processing chromosome scaffold42172 INFO [2014-03-08 06:27:03,063] [Preprocessor.java:241] [main] Processing chromosome scaffold42184 Processing chromosome scaffold42184 INFO [2014-03-08 06:27:03,135] [Preprocessor.java:241] [main] Processing chromosome scaffold42190 Processing chromosome scaffold42190 INFO [2014-03-08 06:27:03,202] [Preprocessor.java:241] [main] Processing chromosome scaffold42198 Processing chromosome scaffold42198 INFO [2014-03-08 06:27:03,248] [Preprocessor.java:241] [main] Processing chromosome scaffold422 Processing chromosome scaffold422 INFO [2014-03-08 06:27:03,312] [Preprocessor.java:241] [main] Processing chromosome scaffold42208 Processing chromosome scaffold42208 INFO [2014-03-08 06:27:03,337] [Preprocessor.java:241] [main] Processing chromosome scaffold42210 Processing chromosome scaffold42210 INFO [2014-03-08 06:27:03,361] [Preprocessor.java:241] [main] Processing chromosome scaffold42214 Processing chromosome scaffold42214 INFO [2014-03-08 06:27:03,431] [Preprocessor.java:241] [main] Processing chromosome scaffold42226 Processing chromosome scaffold42226 INFO [2014-03-08 06:27:03,490] [Preprocessor.java:241] [main] Processing chromosome scaffold42236 Processing chromosome scaffold42236 INFO [2014-03-08 06:27:03,563] [Preprocessor.java:241] [main] Processing chromosome scaffold42246 Processing chromosome scaffold42246 INFO [2014-03-08 06:27:03,631] [Preprocessor.java:241] [main] Processing chromosome scaffold42252 Processing chromosome scaffold42252 INFO [2014-03-08 06:27:03,687] [Preprocessor.java:241] [main] Processing chromosome scaffold42262 Processing chromosome scaffold42262 INFO [2014-03-08 06:27:03,783] [Preprocessor.java:241] [main] Processing chromosome scaffold42264 Processing chromosome scaffold42264 INFO [2014-03-08 06:27:03,810] [Preprocessor.java:241] [main] Processing chromosome scaffold42268 Processing chromosome scaffold42268 INFO [2014-03-08 06:27:03,851] [Preprocessor.java:241] [main] Processing chromosome scaffold42272 Processing chromosome scaffold42272 INFO [2014-03-08 06:27:03,915] [Preprocessor.java:241] [main] Processing chromosome scaffold42274 Processing chromosome scaffold42274 INFO [2014-03-08 06:27:03,952] [Preprocessor.java:241] [main] Processing chromosome scaffold423 Processing chromosome scaffold423 INFO [2014-03-08 06:27:03,961] [Preprocessor.java:241] [main] Processing chromosome scaffold42302 Processing chromosome scaffold42302 INFO [2014-03-08 06:27:04,037] [Preprocessor.java:241] [main] Processing chromosome scaffold42306 Processing chromosome scaffold42306 INFO [2014-03-08 06:27:04,089] [Preprocessor.java:241] [main] Processing chromosome scaffold42326 Processing chromosome scaffold42326 INFO [2014-03-08 06:27:04,123] [Preprocessor.java:241] [main] Processing chromosome scaffold42328 Processing chromosome scaffold42328 INFO [2014-03-08 06:27:04,198] [Preprocessor.java:241] [main] Processing chromosome scaffold42348 Processing chromosome scaffold42348 INFO [2014-03-08 06:27:04,239] [Preprocessor.java:241] [main] Processing chromosome scaffold42364 Processing chromosome scaffold42364 INFO [2014-03-08 06:27:04,297] [Preprocessor.java:241] [main] Processing chromosome scaffold42366 Processing chromosome scaffold42366 INFO [2014-03-08 06:27:04,348] [Preprocessor.java:241] [main] Processing chromosome scaffold42372 Processing chromosome scaffold42372 INFO [2014-03-08 06:27:04,368] [Preprocessor.java:241] [main] Processing chromosome scaffold42380 Processing chromosome scaffold42380 INFO [2014-03-08 06:27:04,409] [Preprocessor.java:241] [main] Processing chromosome scaffold42390 Processing chromosome scaffold42390 INFO [2014-03-08 06:27:04,453] [Preprocessor.java:241] [main] Processing chromosome scaffold42392 Processing chromosome scaffold42392 INFO [2014-03-08 06:27:04,476] [Preprocessor.java:241] [main] Processing chromosome scaffold424 Processing chromosome scaffold424 INFO [2014-03-08 06:27:04,532] [Preprocessor.java:241] [main] Processing chromosome scaffold42402 Processing chromosome scaffold42402 INFO [2014-03-08 06:27:04,611] [Preprocessor.java:241] [main] Processing chromosome scaffold42408 Processing chromosome scaffold42408 INFO [2014-03-08 06:27:04,656] [Preprocessor.java:241] [main] Processing chromosome scaffold42422 Processing chromosome scaffold42422 INFO [2014-03-08 06:27:04,761] [Preprocessor.java:241] [main] Processing chromosome scaffold42440 Processing chromosome scaffold42440 INFO [2014-03-08 06:27:04,790] [Preprocessor.java:241] [main] Processing chromosome scaffold42446 Processing chromosome scaffold42446 INFO [2014-03-08 06:27:04,849] [Preprocessor.java:241] [main] Processing chromosome scaffold42448 Processing chromosome scaffold42448 INFO [2014-03-08 06:27:04,913] [Preprocessor.java:241] [main] Processing chromosome scaffold42450 Processing chromosome scaffold42450 INFO [2014-03-08 06:27:04,975] [Preprocessor.java:241] [main] Processing chromosome scaffold42466 Processing chromosome scaffold42466 .INFO [2014-03-08 06:27:05,081] [Preprocessor.java:241] [main] Processing chromosome scaffold42486 Processing chromosome scaffold42486 INFO [2014-03-08 06:27:05,239] [Preprocessor.java:241] [main] Processing chromosome scaffold42490 Processing chromosome scaffold42490 INFO [2014-03-08 06:27:05,306] [Preprocessor.java:241] [main] Processing chromosome scaffold425 Processing chromosome scaffold425 INFO [2014-03-08 06:27:05,473] [Preprocessor.java:241] [main] Processing chromosome scaffold42508 Processing chromosome scaffold42508 INFO [2014-03-08 06:27:05,538] [Preprocessor.java:241] [main] Processing chromosome scaffold42516 Processing chromosome scaffold42516 INFO [2014-03-08 06:27:05,609] [Preprocessor.java:241] [main] Processing chromosome scaffold42518 Processing chromosome scaffold42518 INFO [2014-03-08 06:27:05,730] [Preprocessor.java:241] [main] Processing chromosome scaffold42524 Processing chromosome scaffold42524 INFO [2014-03-08 06:27:05,788] [Preprocessor.java:241] [main] Processing chromosome scaffold42528 Processing chromosome scaffold42528 INFO [2014-03-08 06:27:05,957] [Preprocessor.java:241] [main] Processing chromosome scaffold42530 Processing chromosome scaffold42530 INFO [2014-03-08 06:27:06,035] [Preprocessor.java:241] [main] Processing chromosome scaffold42540 Processing chromosome scaffold42540 INFO [2014-03-08 06:27:06,156] [Preprocessor.java:241] [main] Processing chromosome scaffold42556 Processing chromosome scaffold42556 INFO [2014-03-08 06:27:06,222] [Preprocessor.java:241] [main] Processing chromosome scaffold42558 Processing chromosome scaffold42558 INFO [2014-03-08 06:27:06,300] [Preprocessor.java:241] [main] Processing chromosome scaffold42566 Processing chromosome scaffold42566 INFO [2014-03-08 06:27:06,323] [Preprocessor.java:241] [main] Processing chromosome scaffold42568 Processing chromosome scaffold42568 INFO [2014-03-08 06:27:06,389] [Preprocessor.java:241] [main] Processing chromosome scaffold42570 Processing chromosome scaffold42570 INFO [2014-03-08 06:27:06,437] [Preprocessor.java:241] [main] Processing chromosome scaffold42584 Processing chromosome scaffold42584 INFO [2014-03-08 06:27:06,484] [Preprocessor.java:241] [main] Processing chromosome scaffold42592 Processing chromosome scaffold42592 INFO [2014-03-08 06:27:06,536] [Preprocessor.java:241] [main] Processing chromosome scaffold42596 Processing chromosome scaffold42596 INFO [2014-03-08 06:27:06,580] [Preprocessor.java:241] [main] Processing chromosome scaffold42598 Processing chromosome scaffold42598 INFO [2014-03-08 06:27:06,618] [Preprocessor.java:241] [main] Processing chromosome scaffold426 Processing chromosome scaffold426 INFO [2014-03-08 06:27:06,644] [Preprocessor.java:241] [main] Processing chromosome scaffold42604 Processing chromosome scaffold42604 INFO [2014-03-08 06:27:06,685] [Preprocessor.java:241] [main] Processing chromosome scaffold42618 Processing chromosome scaffold42618 INFO [2014-03-08 06:27:06,728] [Preprocessor.java:241] [main] Processing chromosome scaffold42634 Processing chromosome scaffold42634 INFO [2014-03-08 06:27:06,814] [Preprocessor.java:241] [main] Processing chromosome scaffold42640 Processing chromosome scaffold42640 INFO [2014-03-08 06:27:06,888] [Preprocessor.java:241] [main] Processing chromosome scaffold42648 Processing chromosome scaffold42648 INFO [2014-03-08 06:27:06,965] [Preprocessor.java:241] [main] Processing chromosome scaffold42656 Processing chromosome scaffold42656 INFO [2014-03-08 06:27:07,019] [Preprocessor.java:241] [main] Processing chromosome scaffold42662 Processing chromosome scaffold42662 INFO [2014-03-08 06:27:07,112] [Preprocessor.java:241] [main] Processing chromosome scaffold42674 Processing chromosome scaffold42674 INFO [2014-03-08 06:27:07,160] [Preprocessor.java:241] [main] Processing chromosome scaffold42684 Processing chromosome scaffold42684 INFO [2014-03-08 06:27:07,229] [Preprocessor.java:241] [main] Processing chromosome scaffold427 Processing chromosome scaffold427 INFO [2014-03-08 06:27:07,275] [Preprocessor.java:241] [main] Processing chromosome scaffold42704 Processing chromosome scaffold42704 INFO [2014-03-08 06:27:07,294] [Preprocessor.java:241] [main] Processing chromosome scaffold42726 Processing chromosome scaffold42726 INFO [2014-03-08 06:27:07,340] [Preprocessor.java:241] [main] Processing chromosome scaffold42740 Processing chromosome scaffold42740 INFO [2014-03-08 06:27:07,397] [Preprocessor.java:241] [main] Processing chromosome scaffold42754 Processing chromosome scaffold42754 INFO [2014-03-08 06:27:07,458] [Preprocessor.java:241] [main] Processing chromosome scaffold42760 Processing chromosome scaffold42760 INFO [2014-03-08 06:27:07,525] [Preprocessor.java:241] [main] Processing chromosome scaffold42762 Processing chromosome scaffold42762 INFO [2014-03-08 06:27:07,546] [Preprocessor.java:241] [main] Processing chromosome scaffold42766 Processing chromosome scaffold42766 INFO [2014-03-08 06:27:07,597] [Preprocessor.java:241] [main] Processing chromosome scaffold42770 Processing chromosome scaffold42770 INFO [2014-03-08 06:27:07,629] [Preprocessor.java:241] [main] Processing chromosome scaffold42776 Processing chromosome scaffold42776 INFO [2014-03-08 06:27:07,701] [Preprocessor.java:241] [main] Processing chromosome scaffold42784 Processing chromosome scaffold42784 INFO [2014-03-08 06:27:07,779] [Preprocessor.java:241] [main] Processing chromosome scaffold42788 Processing chromosome scaffold42788 INFO [2014-03-08 06:27:07,819] [Preprocessor.java:241] [main] Processing chromosome scaffold42790 Processing chromosome scaffold42790 INFO [2014-03-08 06:27:07,848] [Preprocessor.java:241] [main] Processing chromosome scaffold42794 Processing chromosome scaffold42794 INFO [2014-03-08 06:27:07,910] [Preprocessor.java:241] [main] Processing chromosome scaffold42804 Processing chromosome scaffold42804 INFO [2014-03-08 06:27:07,928] [Preprocessor.java:241] [main] Processing chromosome scaffold42836 Processing chromosome scaffold42836 INFO [2014-03-08 06:27:07,996] [Preprocessor.java:241] [main] Processing chromosome scaffold42840 Processing chromosome scaffold42840 INFO [2014-03-08 06:27:08,061] [Preprocessor.java:241] [main] Processing chromosome scaffold42850 Processing chromosome scaffold42850 INFO [2014-03-08 06:27:08,190] [Preprocessor.java:241] [main] Processing chromosome scaffold42866 Processing chromosome scaffold42866 INFO [2014-03-08 06:27:08,230] [Preprocessor.java:241] [main] Processing chromosome scaffold42880 Processing chromosome scaffold42880 INFO [2014-03-08 06:27:08,248] [Preprocessor.java:241] [main] Processing chromosome scaffold42890 Processing chromosome scaffold42890 INFO [2014-03-08 06:27:08,293] [Preprocessor.java:241] [main] Processing chromosome scaffold42892 Processing chromosome scaffold42892 INFO [2014-03-08 06:27:08,352] [Preprocessor.java:241] [main] Processing chromosome scaffold42894 Processing chromosome scaffold42894 INFO [2014-03-08 06:27:08,424] [Preprocessor.java:241] [main] Processing chromosome scaffold42896 Processing chromosome scaffold42896 INFO [2014-03-08 06:27:08,446] [Preprocessor.java:241] [main] Processing chromosome scaffold429 Processing chromosome scaffold429 INFO [2014-03-08 06:27:08,477] [Preprocessor.java:241] [main] Processing chromosome scaffold42904 Processing chromosome scaffold42904 INFO [2014-03-08 06:27:08,560] [Preprocessor.java:241] [main] Processing chromosome scaffold42918 Processing chromosome scaffold42918 INFO [2014-03-08 06:27:08,600] [Preprocessor.java:241] [main] Processing chromosome scaffold42922 Processing chromosome scaffold42922 INFO [2014-03-08 06:27:08,664] [Preprocessor.java:241] [main] Processing chromosome scaffold42924 Processing chromosome scaffold42924 INFO [2014-03-08 06:27:08,705] [Preprocessor.java:241] [main] Processing chromosome scaffold42930 Processing chromosome scaffold42930 INFO [2014-03-08 06:27:08,741] [Preprocessor.java:241] [main] Processing chromosome scaffold42946 Processing chromosome scaffold42946 INFO [2014-03-08 06:27:08,799] [Preprocessor.java:241] [main] Processing chromosome scaffold42948 Processing chromosome scaffold42948 INFO [2014-03-08 06:27:08,858] [Preprocessor.java:241] [main] Processing chromosome scaffold42960 Processing chromosome scaffold42960 INFO [2014-03-08 06:27:08,890] [Preprocessor.java:241] [main] Processing chromosome scaffold42974 Processing chromosome scaffold42974 INFO [2014-03-08 06:27:08,961] [Preprocessor.java:241] [main] Processing chromosome scaffold42990 Processing chromosome scaffold42990 INFO [2014-03-08 06:27:09,014] [Preprocessor.java:241] [main] Processing chromosome scaffold42994 Processing chromosome scaffold42994 INFO [2014-03-08 06:27:09,084] [Preprocessor.java:241] [main] Processing chromosome scaffold43 Processing chromosome scaffold43 INFO [2014-03-08 06:27:09,186] [Preprocessor.java:241] [main] Processing chromosome scaffold43008 Processing chromosome scaffold43008 INFO [2014-03-08 06:27:09,206] [Preprocessor.java:241] [main] Processing chromosome scaffold43012 Processing chromosome scaffold43012 .INFO [2014-03-08 06:27:09,293] [Preprocessor.java:241] [main] Processing chromosome scaffold43024 Processing chromosome scaffold43024 INFO [2014-03-08 06:27:09,380] [Preprocessor.java:241] [main] Processing chromosome scaffold43026 Processing chromosome scaffold43026 INFO [2014-03-08 06:27:09,406] [Preprocessor.java:241] [main] Processing chromosome scaffold43028 Processing chromosome scaffold43028 INFO [2014-03-08 06:27:09,487] [Preprocessor.java:241] [main] Processing chromosome scaffold43034 Processing chromosome scaffold43034 INFO [2014-03-08 06:27:09,586] [Preprocessor.java:241] [main] Processing chromosome scaffold43036 Processing chromosome scaffold43036 INFO [2014-03-08 06:27:09,630] [Preprocessor.java:241] [main] Processing chromosome scaffold43038 Processing chromosome scaffold43038 INFO [2014-03-08 06:27:09,704] [Preprocessor.java:241] [main] Processing chromosome scaffold43054 Processing chromosome scaffold43054 INFO [2014-03-08 06:27:09,741] [Preprocessor.java:241] [main] Processing chromosome scaffold43064 Processing chromosome scaffold43064 INFO [2014-03-08 06:27:09,783] [Preprocessor.java:241] [main] Processing chromosome scaffold43066 Processing chromosome scaffold43066 INFO [2014-03-08 06:27:09,828] [Preprocessor.java:241] [main] Processing chromosome scaffold43072 Processing chromosome scaffold43072 INFO [2014-03-08 06:27:09,929] [Preprocessor.java:241] [main] Processing chromosome scaffold43074 Processing chromosome scaffold43074 INFO [2014-03-08 06:27:09,972] [Preprocessor.java:241] [main] Processing chromosome scaffold43076 Processing chromosome scaffold43076 INFO [2014-03-08 06:27:10,012] [Preprocessor.java:241] [main] Processing chromosome scaffold43084 Processing chromosome scaffold43084 INFO [2014-03-08 06:27:10,115] [Preprocessor.java:241] [main] Processing chromosome scaffold43108 Processing chromosome scaffold43108 INFO [2014-03-08 06:27:10,156] [Preprocessor.java:241] [main] Processing chromosome scaffold43116 Processing chromosome scaffold43116 INFO [2014-03-08 06:27:10,246] [Preprocessor.java:241] [main] Processing chromosome scaffold43122 Processing chromosome scaffold43122 INFO [2014-03-08 06:27:10,342] [Preprocessor.java:241] [main] Processing chromosome scaffold43130 Processing chromosome scaffold43130 INFO [2014-03-08 06:27:10,445] [Preprocessor.java:241] [main] Processing chromosome scaffold43134 Processing chromosome scaffold43134 INFO [2014-03-08 06:27:10,529] [Preprocessor.java:241] [main] Processing chromosome scaffold43136 Processing chromosome scaffold43136 INFO [2014-03-08 06:27:10,557] [Preprocessor.java:241] [main] Processing chromosome scaffold43146 Processing chromosome scaffold43146 INFO [2014-03-08 06:27:10,585] [Preprocessor.java:241] [main] Processing chromosome scaffold43150 Processing chromosome scaffold43150 INFO [2014-03-08 06:27:10,667] [Preprocessor.java:241] [main] Processing chromosome scaffold43170 Processing chromosome scaffold43170 INFO [2014-03-08 06:27:10,740] [Preprocessor.java:241] [main] Processing chromosome scaffold43182 Processing chromosome scaffold43182 INFO [2014-03-08 06:27:10,765] [Preprocessor.java:241] [main] Processing chromosome scaffold43184 Processing chromosome scaffold43184 INFO [2014-03-08 06:27:10,824] [Preprocessor.java:241] [main] Processing chromosome scaffold43194 Processing chromosome scaffold43194 INFO [2014-03-08 06:27:10,873] [Preprocessor.java:241] [main] Processing chromosome scaffold432 Processing chromosome scaffold432 INFO [2014-03-08 06:27:11,100] [Preprocessor.java:241] [main] Processing chromosome scaffold43200 Processing chromosome scaffold43200 INFO [2014-03-08 06:27:11,125] [Preprocessor.java:241] [main] Processing chromosome scaffold43206 Processing chromosome scaffold43206 INFO [2014-03-08 06:27:11,205] [Preprocessor.java:241] [main] Processing chromosome scaffold43208 Processing chromosome scaffold43208 INFO [2014-03-08 06:27:11,263] [Preprocessor.java:241] [main] Processing chromosome scaffold43210 Processing chromosome scaffold43210 INFO [2014-03-08 06:27:11,296] [Preprocessor.java:241] [main] Processing chromosome scaffold43240 Processing chromosome scaffold43240 INFO [2014-03-08 06:27:11,346] [Preprocessor.java:241] [main] Processing chromosome scaffold43242 Processing chromosome scaffold43242 INFO [2014-03-08 06:27:11,391] [Preprocessor.java:241] [main] Processing chromosome scaffold43244 Processing chromosome scaffold43244 INFO [2014-03-08 06:27:11,442] [Preprocessor.java:241] [main] Processing chromosome scaffold43258 Processing chromosome scaffold43258 INFO [2014-03-08 06:27:11,491] [Preprocessor.java:241] [main] Processing chromosome scaffold43272 Processing chromosome scaffold43272 INFO [2014-03-08 06:27:11,533] [Preprocessor.java:241] [main] Processing chromosome scaffold43278 Processing chromosome scaffold43278 INFO [2014-03-08 06:27:11,596] [Preprocessor.java:241] [main] Processing chromosome scaffold43280 Processing chromosome scaffold43280 INFO [2014-03-08 06:27:11,633] [Preprocessor.java:241] [main] Processing chromosome scaffold43290 Processing chromosome scaffold43290 INFO [2014-03-08 06:27:11,719] [Preprocessor.java:241] [main] Processing chromosome scaffold43296 Processing chromosome scaffold43296 INFO [2014-03-08 06:27:11,761] [Preprocessor.java:241] [main] Processing chromosome scaffold433 Processing chromosome scaffold433 INFO [2014-03-08 06:27:12,001] [Preprocessor.java:241] [main] Processing chromosome scaffold43302 Processing chromosome scaffold43302 INFO [2014-03-08 06:27:12,067] [Preprocessor.java:241] [main] Processing chromosome scaffold43314 Processing chromosome scaffold43314 INFO [2014-03-08 06:27:12,112] [Preprocessor.java:241] [main] Processing chromosome scaffold43340 Processing chromosome scaffold43340 INFO [2014-03-08 06:27:12,191] [Preprocessor.java:241] [main] Processing chromosome scaffold43344 Processing chromosome scaffold43344 INFO [2014-03-08 06:27:12,275] [Preprocessor.java:241] [main] Processing chromosome scaffold43358 Processing chromosome scaffold43358 INFO [2014-03-08 06:27:12,368] [Preprocessor.java:241] [main] Processing chromosome scaffold43364 Processing chromosome scaffold43364 INFO [2014-03-08 06:27:12,435] [Preprocessor.java:241] [main] Processing chromosome scaffold43366 Processing chromosome scaffold43366 INFO [2014-03-08 06:27:12,501] [Preprocessor.java:241] [main] Processing chromosome scaffold43388 Processing chromosome scaffold43388 INFO [2014-03-08 06:27:12,524] [Preprocessor.java:241] [main] Processing chromosome scaffold43396 Processing chromosome scaffold43396 INFO [2014-03-08 06:27:12,606] [Preprocessor.java:241] [main] Processing chromosome scaffold43406 Processing chromosome scaffold43406 .INFO [2014-03-08 06:27:12,663] [Preprocessor.java:241] [main] Processing chromosome scaffold43426 Processing chromosome scaffold43426 INFO [2014-03-08 06:27:12,735] [Preprocessor.java:241] [main] Processing chromosome scaffold43442 Processing chromosome scaffold43442 INFO [2014-03-08 06:27:12,797] [Preprocessor.java:241] [main] Processing chromosome scaffold43446 Processing chromosome scaffold43446 INFO [2014-03-08 06:27:12,857] [Preprocessor.java:241] [main] Processing chromosome scaffold43452 Processing chromosome scaffold43452 INFO [2014-03-08 06:27:12,969] [Preprocessor.java:241] [main] Processing chromosome scaffold43494 Processing chromosome scaffold43494 INFO [2014-03-08 06:27:13,010] [Preprocessor.java:241] [main] Processing chromosome scaffold435 Processing chromosome scaffold435 INFO [2014-03-08 06:27:13,025] [Preprocessor.java:241] [main] Processing chromosome scaffold43500 Processing chromosome scaffold43500 INFO [2014-03-08 06:27:13,094] [Preprocessor.java:241] [main] Processing chromosome scaffold43520 Processing chromosome scaffold43520 INFO [2014-03-08 06:27:13,208] [Preprocessor.java:241] [main] Processing chromosome scaffold43522 Processing chromosome scaffold43522 INFO [2014-03-08 06:27:13,274] [Preprocessor.java:241] [main] Processing chromosome scaffold43526 Processing chromosome scaffold43526 INFO [2014-03-08 06:27:13,344] [Preprocessor.java:241] [main] Processing chromosome scaffold43530 Processing chromosome scaffold43530 INFO [2014-03-08 06:27:13,388] [Preprocessor.java:241] [main] Processing chromosome scaffold43536 Processing chromosome scaffold43536 INFO [2014-03-08 06:27:13,507] [Preprocessor.java:241] [main] Processing chromosome scaffold43538 Processing chromosome scaffold43538 INFO [2014-03-08 06:27:13,560] [Preprocessor.java:241] [main] Processing chromosome scaffold43552 Processing chromosome scaffold43552 INFO [2014-03-08 06:27:13,585] [Preprocessor.java:241] [main] Processing chromosome scaffold43562 Processing chromosome scaffold43562 INFO [2014-03-08 06:27:13,697] [Preprocessor.java:241] [main] Processing chromosome scaffold43574 Processing chromosome scaffold43574 INFO [2014-03-08 06:27:13,826] [Preprocessor.java:241] [main] Processing chromosome scaffold43576 Processing chromosome scaffold43576 INFO [2014-03-08 06:27:13,907] [Preprocessor.java:241] [main] Processing chromosome scaffold43598 Processing chromosome scaffold43598 INFO [2014-03-08 06:27:13,960] [Preprocessor.java:241] [main] Processing chromosome scaffold436 Processing chromosome scaffold436 INFO [2014-03-08 06:27:13,968] [Preprocessor.java:241] [main] Processing chromosome scaffold43608 Processing chromosome scaffold43608 INFO [2014-03-08 06:27:14,020] [Preprocessor.java:241] [main] Processing chromosome scaffold43616 Processing chromosome scaffold43616 INFO [2014-03-08 06:27:14,101] [Preprocessor.java:241] [main] Processing chromosome scaffold43624 Processing chromosome scaffold43624 INFO [2014-03-08 06:27:14,140] [Preprocessor.java:241] [main] Processing chromosome scaffold43630 Processing chromosome scaffold43630 INFO [2014-03-08 06:27:14,217] [Preprocessor.java:241] [main] Processing chromosome scaffold43634 Processing chromosome scaffold43634 INFO [2014-03-08 06:27:14,247] [Preprocessor.java:241] [main] Processing chromosome scaffold43648 Processing chromosome scaffold43648 INFO [2014-03-08 06:27:14,305] [Preprocessor.java:241] [main] Processing chromosome scaffold43660 Processing chromosome scaffold43660 INFO [2014-03-08 06:27:14,356] [Preprocessor.java:241] [main] Processing chromosome scaffold43662 Processing chromosome scaffold43662 INFO [2014-03-08 06:27:14,382] [Preprocessor.java:241] [main] Processing chromosome scaffold43664 Processing chromosome scaffold43664 INFO [2014-03-08 06:27:14,458] [Preprocessor.java:241] [main] Processing chromosome scaffold43676 Processing chromosome scaffold43676 INFO [2014-03-08 06:27:14,520] [Preprocessor.java:241] [main] Processing chromosome scaffold43680 Processing chromosome scaffold43680 INFO [2014-03-08 06:27:14,605] [Preprocessor.java:241] [main] Processing chromosome scaffold43686 Processing chromosome scaffold43686 INFO [2014-03-08 06:27:14,658] [Preprocessor.java:241] [main] Processing chromosome scaffold43692 Processing chromosome scaffold43692 INFO [2014-03-08 06:27:14,746] [Preprocessor.java:241] [main] Processing chromosome scaffold43696 Processing chromosome scaffold43696 INFO [2014-03-08 06:27:14,807] [Preprocessor.java:241] [main] Processing chromosome scaffold43702 Processing chromosome scaffold43702 INFO [2014-03-08 06:27:14,878] [Preprocessor.java:241] [main] Processing chromosome scaffold43708 Processing chromosome scaffold43708 INFO [2014-03-08 06:27:14,982] [Preprocessor.java:241] [main] Processing chromosome scaffold43726 Processing chromosome scaffold43726 INFO [2014-03-08 06:27:15,045] [Preprocessor.java:241] [main] Processing chromosome scaffold43742 Processing chromosome scaffold43742 INFO [2014-03-08 06:27:15,168] [Preprocessor.java:241] [main] Processing chromosome scaffold43764 Processing chromosome scaffold43764 INFO [2014-03-08 06:27:15,237] [Preprocessor.java:241] [main] Processing chromosome scaffold43772 Processing chromosome scaffold43772 INFO [2014-03-08 06:27:15,285] [Preprocessor.java:241] [main] Processing chromosome scaffold43782 Processing chromosome scaffold43782 INFO [2014-03-08 06:27:15,350] [Preprocessor.java:241] [main] Processing chromosome scaffold43786 Processing chromosome scaffold43786 INFO [2014-03-08 06:27:15,444] [Preprocessor.java:241] [main] Processing chromosome scaffold43794 Processing chromosome scaffold43794 INFO [2014-03-08 06:27:15,512] [Preprocessor.java:241] [main] Processing chromosome scaffold43798 Processing chromosome scaffold43798 INFO [2014-03-08 06:27:15,565] [Preprocessor.java:241] [main] Processing chromosome scaffold43804 Processing chromosome scaffold43804 INFO [2014-03-08 06:27:15,634] [Preprocessor.java:241] [main] Processing chromosome scaffold43818 Processing chromosome scaffold43818 INFO [2014-03-08 06:27:15,733] [Preprocessor.java:241] [main] Processing chromosome scaffold43836 Processing chromosome scaffold43836 INFO [2014-03-08 06:27:15,793] [Preprocessor.java:241] [main] Processing chromosome scaffold43842 Processing chromosome scaffold43842 INFO [2014-03-08 06:27:15,905] [Preprocessor.java:241] [main] Processing chromosome scaffold43844 Processing chromosome scaffold43844 INFO [2014-03-08 06:27:15,951] [Preprocessor.java:241] [main] Processing chromosome scaffold43868 Processing chromosome scaffold43868 INFO [2014-03-08 06:27:16,055] [Preprocessor.java:241] [main] Processing chromosome scaffold43878 Processing chromosome scaffold43878 .INFO [2014-03-08 06:27:16,111] [Preprocessor.java:241] [main] Processing chromosome scaffold43894 Processing chromosome scaffold43894 INFO [2014-03-08 06:27:16,180] [Preprocessor.java:241] [main] Processing chromosome scaffold439 Processing chromosome scaffold439 INFO [2014-03-08 06:27:16,202] [Preprocessor.java:241] [main] Processing chromosome scaffold43920 Processing chromosome scaffold43920 INFO [2014-03-08 06:27:16,297] [Preprocessor.java:241] [main] Processing chromosome scaffold43932 Processing chromosome scaffold43932 INFO [2014-03-08 06:27:16,420] [Preprocessor.java:241] [main] Processing chromosome scaffold43940 Processing chromosome scaffold43940 INFO [2014-03-08 06:27:16,561] [Preprocessor.java:241] [main] Processing chromosome scaffold43954 Processing chromosome scaffold43954 INFO [2014-03-08 06:27:16,674] [Preprocessor.java:241] [main] Processing chromosome scaffold43956 Processing chromosome scaffold43956 INFO [2014-03-08 06:27:16,808] [Preprocessor.java:241] [main] Processing chromosome scaffold43964 Processing chromosome scaffold43964 INFO [2014-03-08 06:27:16,981] [Preprocessor.java:241] [main] Processing chromosome scaffold43986 Processing chromosome scaffold43986 INFO [2014-03-08 06:27:17,086] [Preprocessor.java:241] [main] Processing chromosome scaffold43988 Processing chromosome scaffold43988 INFO [2014-03-08 06:27:17,176] [Preprocessor.java:241] [main] Processing chromosome scaffold44 Processing chromosome scaffold44 INFO [2014-03-08 06:27:17,280] [Preprocessor.java:241] [main] Processing chromosome scaffold440 Processing chromosome scaffold440 INFO [2014-03-08 06:27:17,318] [Preprocessor.java:241] [main] Processing chromosome scaffold44006 Processing chromosome scaffold44006 INFO [2014-03-08 06:27:17,411] [Preprocessor.java:241] [main] Processing chromosome scaffold44008 Processing chromosome scaffold44008 INFO [2014-03-08 06:27:17,493] [Preprocessor.java:241] [main] Processing chromosome scaffold44054 Processing chromosome scaffold44054 INFO [2014-03-08 06:27:17,596] [Preprocessor.java:241] [main] Processing chromosome scaffold44064 Processing chromosome scaffold44064 INFO [2014-03-08 06:27:17,741] [Preprocessor.java:241] [main] Processing chromosome scaffold44098 Processing chromosome scaffold44098 INFO [2014-03-08 06:27:17,873] [Preprocessor.java:241] [main] Processing chromosome scaffold441 Processing chromosome scaffold441 INFO [2014-03-08 06:27:17,880] [Preprocessor.java:241] [main] Processing chromosome scaffold442 Processing chromosome scaffold442 INFO [2014-03-08 06:27:17,898] [Preprocessor.java:241] [main] Processing chromosome scaffold443 Processing chromosome scaffold443 INFO [2014-03-08 06:27:18,007] [Preprocessor.java:241] [main] Processing chromosome scaffold444 Processing chromosome scaffold444 INFO [2014-03-08 06:27:18,052] [Preprocessor.java:241] [main] Processing chromosome scaffold445 Processing chromosome scaffold445 INFO [2014-03-08 06:27:18,183] [Preprocessor.java:241] [main] Processing chromosome scaffold446 Processing chromosome scaffold446 INFO [2014-03-08 06:27:18,204] [Preprocessor.java:241] [main] Processing chromosome scaffold447 Processing chromosome scaffold447 INFO [2014-03-08 06:27:18,286] [Preprocessor.java:241] [main] Processing chromosome scaffold448 Processing chromosome scaffold448 INFO [2014-03-08 06:27:18,416] [Preprocessor.java:241] [main] Processing chromosome scaffold449 Processing chromosome scaffold449 INFO [2014-03-08 06:27:18,521] [Preprocessor.java:241] [main] Processing chromosome scaffold450 Processing chromosome scaffold450 INFO [2014-03-08 06:27:18,547] [Preprocessor.java:241] [main] Processing chromosome scaffold451 Processing chromosome scaffold451 INFO [2014-03-08 06:27:18,569] [Preprocessor.java:241] [main] Processing chromosome scaffold452 Processing chromosome scaffold452 INFO [2014-03-08 06:27:18,625] [Preprocessor.java:241] [main] Processing chromosome scaffold453 Processing chromosome scaffold453 INFO [2014-03-08 06:27:18,678] [Preprocessor.java:241] [main] Processing chromosome scaffold454 Processing chromosome scaffold454 INFO [2014-03-08 06:27:18,744] [Preprocessor.java:241] [main] Processing chromosome scaffold455 Processing chromosome scaffold455 INFO [2014-03-08 06:27:18,787] [Preprocessor.java:241] [main] Processing chromosome scaffold456 Processing chromosome scaffold456 INFO [2014-03-08 06:27:18,827] [Preprocessor.java:241] [main] Processing chromosome scaffold457 Processing chromosome scaffold457 INFO [2014-03-08 06:27:18,885] [Preprocessor.java:241] [main] Processing chromosome scaffold458 Processing chromosome scaffold458 INFO [2014-03-08 06:27:18,995] [Preprocessor.java:241] [main] Processing chromosome scaffold459 Processing chromosome scaffold459 INFO [2014-03-08 06:27:19,082] [Preprocessor.java:241] [main] Processing chromosome scaffold46 Processing chromosome scaffold46 INFO [2014-03-08 06:27:19,097] [Preprocessor.java:241] [main] Processing chromosome scaffold461 Processing chromosome scaffold461 INFO [2014-03-08 06:27:19,147] [Preprocessor.java:241] [main] Processing chromosome scaffold462 Processing chromosome scaffold462 INFO [2014-03-08 06:27:19,153] [Preprocessor.java:241] [main] Processing chromosome scaffold463 Processing chromosome scaffold463 INFO [2014-03-08 06:27:19,189] [Preprocessor.java:241] [main] Processing chromosome scaffold464 Processing chromosome scaffold464 INFO [2014-03-08 06:27:19,271] [Preprocessor.java:241] [main] Processing chromosome scaffold465 Processing chromosome scaffold465 INFO [2014-03-08 06:27:19,291] [Preprocessor.java:241] [main] Processing chromosome scaffold466 Processing chromosome scaffold466 INFO [2014-03-08 06:27:19,312] [Preprocessor.java:241] [main] Processing chromosome scaffold467 Processing chromosome scaffold467 .INFO [2014-03-08 06:27:19,345] [Preprocessor.java:241] [main] Processing chromosome scaffold469 Processing chromosome scaffold469 INFO [2014-03-08 06:27:19,481] [Preprocessor.java:241] [main] Processing chromosome scaffold47 Processing chromosome scaffold47 INFO [2014-03-08 06:27:19,524] [Preprocessor.java:241] [main] Processing chromosome scaffold470 Processing chromosome scaffold470 INFO [2014-03-08 06:27:19,538] [Preprocessor.java:241] [main] Processing chromosome scaffold471 Processing chromosome scaffold471 INFO [2014-03-08 06:27:19,710] [Preprocessor.java:241] [main] Processing chromosome scaffold472 Processing chromosome scaffold472 INFO [2014-03-08 06:27:19,818] [Preprocessor.java:241] [main] Processing chromosome scaffold473 Processing chromosome scaffold473 INFO [2014-03-08 06:27:19,894] [Preprocessor.java:241] [main] Processing chromosome scaffold474 Processing chromosome scaffold474 INFO [2014-03-08 06:27:19,924] [Preprocessor.java:241] [main] Processing chromosome scaffold475 Processing chromosome scaffold475 INFO [2014-03-08 06:27:19,951] [Preprocessor.java:241] [main] Processing chromosome scaffold476 Processing chromosome scaffold476 INFO [2014-03-08 06:27:19,954] [Preprocessor.java:241] [main] Processing chromosome scaffold477 Processing chromosome scaffold477 INFO [2014-03-08 06:27:19,991] [Preprocessor.java:241] [main] Processing chromosome scaffold478 Processing chromosome scaffold478 INFO [2014-03-08 06:27:20,021] [Preprocessor.java:241] [main] Processing chromosome scaffold479 Processing chromosome scaffold479 INFO [2014-03-08 06:27:20,111] [Preprocessor.java:241] [main] Processing chromosome scaffold48 Processing chromosome scaffold48 INFO [2014-03-08 06:27:20,231] [Preprocessor.java:241] [main] Processing chromosome scaffold481 Processing chromosome scaffold481 INFO [2014-03-08 06:27:20,490] [Preprocessor.java:241] [main] Processing chromosome scaffold482 Processing chromosome scaffold482 INFO [2014-03-08 06:27:20,564] [Preprocessor.java:241] [main] Processing chromosome scaffold483 Processing chromosome scaffold483 INFO [2014-03-08 06:27:20,593] [Preprocessor.java:241] [main] Processing chromosome scaffold484 Processing chromosome scaffold484 INFO [2014-03-08 06:27:20,624] [Preprocessor.java:241] [main] Processing chromosome scaffold485 Processing chromosome scaffold485 INFO [2014-03-08 06:27:20,797] [Preprocessor.java:241] [main] Processing chromosome scaffold486 Processing chromosome scaffold486 INFO [2014-03-08 06:27:20,813] [Preprocessor.java:241] [main] Processing chromosome scaffold487 Processing chromosome scaffold487 INFO [2014-03-08 06:27:20,878] [Preprocessor.java:241] [main] Processing chromosome scaffold488 Processing chromosome scaffold488 INFO [2014-03-08 06:27:20,909] [Preprocessor.java:241] [main] Processing chromosome scaffold489 Processing chromosome scaffold489 INFO [2014-03-08 06:27:21,018] [Preprocessor.java:241] [main] Processing chromosome scaffold49 Processing chromosome scaffold49 INFO [2014-03-08 06:27:21,063] [Preprocessor.java:241] [main] Processing chromosome scaffold490 Processing chromosome scaffold490 INFO [2014-03-08 06:27:21,092] [Preprocessor.java:241] [main] Processing chromosome scaffold491 Processing chromosome scaffold491 INFO [2014-03-08 06:27:21,115] [Preprocessor.java:241] [main] Processing chromosome scaffold492 Processing chromosome scaffold492 INFO [2014-03-08 06:27:21,304] [Preprocessor.java:241] [main] Processing chromosome scaffold493 Processing chromosome scaffold493 INFO [2014-03-08 06:27:21,383] [Preprocessor.java:241] [main] Processing chromosome scaffold494 Processing chromosome scaffold494 INFO [2014-03-08 06:27:21,424] [Preprocessor.java:241] [main] Processing chromosome scaffold496 Processing chromosome scaffold496 INFO [2014-03-08 06:27:21,575] [Preprocessor.java:241] [main] Processing chromosome scaffold497 Processing chromosome scaffold497 INFO [2014-03-08 06:27:21,629] [Preprocessor.java:241] [main] Processing chromosome scaffold498 Processing chromosome scaffold498 INFO [2014-03-08 06:27:21,689] [Preprocessor.java:241] [main] Processing chromosome scaffold499 Processing chromosome scaffold499 INFO [2014-03-08 06:27:21,773] [Preprocessor.java:241] [main] Processing chromosome scaffold5 Processing chromosome scaffold5 INFO [2014-03-08 06:27:21,812] [Preprocessor.java:241] [main] Processing chromosome scaffold50 Processing chromosome scaffold50 INFO [2014-03-08 06:27:21,856] [Preprocessor.java:241] [main] Processing chromosome scaffold500 Processing chromosome scaffold500 INFO [2014-03-08 06:27:21,944] [Preprocessor.java:241] [main] Processing chromosome scaffold501 Processing chromosome scaffold501 INFO [2014-03-08 06:27:22,129] [Preprocessor.java:241] [main] Processing chromosome scaffold502 Processing chromosome scaffold502 .INFO [2014-03-08 06:27:22,227] [Preprocessor.java:241] [main] Processing chromosome scaffold503 Processing chromosome scaffold503 INFO [2014-03-08 06:27:22,272] [Preprocessor.java:241] [main] Processing chromosome scaffold504 Processing chromosome scaffold504 INFO [2014-03-08 06:27:22,363] [Preprocessor.java:241] [main] Processing chromosome scaffold505 Processing chromosome scaffold505 INFO [2014-03-08 06:27:22,379] [Preprocessor.java:241] [main] Processing chromosome scaffold506 Processing chromosome scaffold506 INFO [2014-03-08 06:27:22,520] [Preprocessor.java:241] [main] Processing chromosome scaffold507 Processing chromosome scaffold507 INFO [2014-03-08 06:27:22,598] [Preprocessor.java:241] [main] Processing chromosome scaffold508 Processing chromosome scaffold508 INFO [2014-03-08 06:27:22,666] [Preprocessor.java:241] [main] Processing chromosome scaffold509 Processing chromosome scaffold509 INFO [2014-03-08 06:27:22,779] [Preprocessor.java:241] [main] Processing chromosome scaffold510 Processing chromosome scaffold510 INFO [2014-03-08 06:27:22,836] [Preprocessor.java:241] [main] Processing chromosome scaffold511 Processing chromosome scaffold511 INFO [2014-03-08 06:27:22,874] [Preprocessor.java:241] [main] Processing chromosome scaffold513 Processing chromosome scaffold513 INFO [2014-03-08 06:27:23,021] [Preprocessor.java:241] [main] Processing chromosome scaffold514 Processing chromosome scaffold514 INFO [2014-03-08 06:27:23,153] [Preprocessor.java:241] [main] Processing chromosome scaffold515 Processing chromosome scaffold515 INFO [2014-03-08 06:27:23,161] [Preprocessor.java:241] [main] Processing chromosome scaffold516 Processing chromosome scaffold516 INFO [2014-03-08 06:27:23,173] [Preprocessor.java:241] [main] Processing chromosome scaffold517 Processing chromosome scaffold517 INFO [2014-03-08 06:27:23,205] [Preprocessor.java:241] [main] Processing chromosome scaffold518 Processing chromosome scaffold518 INFO [2014-03-08 06:27:23,211] [Preprocessor.java:241] [main] Processing chromosome scaffold520 Processing chromosome scaffold520 INFO [2014-03-08 06:27:23,242] [Preprocessor.java:241] [main] Processing chromosome scaffold521 Processing chromosome scaffold521 INFO [2014-03-08 06:27:23,291] [Preprocessor.java:241] [main] Processing chromosome scaffold522 Processing chromosome scaffold522 INFO [2014-03-08 06:27:23,493] [Preprocessor.java:241] [main] Processing chromosome scaffold523 Processing chromosome scaffold523 INFO [2014-03-08 06:27:23,529] [Preprocessor.java:241] [main] Processing chromosome scaffold524 Processing chromosome scaffold524 INFO [2014-03-08 06:27:23,584] [Preprocessor.java:241] [main] Processing chromosome scaffold525 Processing chromosome scaffold525 INFO [2014-03-08 06:27:23,616] [Preprocessor.java:241] [main] Processing chromosome scaffold527 Processing chromosome scaffold527 INFO [2014-03-08 06:27:23,683] [Preprocessor.java:241] [main] Processing chromosome scaffold528 Processing chromosome scaffold528 INFO [2014-03-08 06:27:23,696] [Preprocessor.java:241] [main] Processing chromosome scaffold53 Processing chromosome scaffold53 INFO [2014-03-08 06:27:23,862] [Preprocessor.java:241] [main] Processing chromosome scaffold531 Processing chromosome scaffold531 INFO [2014-03-08 06:27:23,935] [Preprocessor.java:241] [main] Processing chromosome scaffold532 Processing chromosome scaffold532 INFO [2014-03-08 06:27:23,997] [Preprocessor.java:241] [main] Processing chromosome scaffold533 Processing chromosome scaffold533 INFO [2014-03-08 06:27:24,021] [Preprocessor.java:241] [main] Processing chromosome scaffold534 Processing chromosome scaffold534 INFO [2014-03-08 06:27:24,065] [Preprocessor.java:241] [main] Processing chromosome scaffold535 Processing chromosome scaffold535 INFO [2014-03-08 06:27:24,173] [Preprocessor.java:241] [main] Processing chromosome scaffold536 Processing chromosome scaffold536 INFO [2014-03-08 06:27:24,253] [Preprocessor.java:241] [main] Processing chromosome scaffold54 Processing chromosome scaffold54 INFO [2014-03-08 06:27:24,369] [Preprocessor.java:241] [main] Processing chromosome scaffold540 Processing chromosome scaffold540 INFO [2014-03-08 06:27:24,389] [Preprocessor.java:241] [main] Processing chromosome scaffold541 Processing chromosome scaffold541 INFO [2014-03-08 06:27:24,486] [Preprocessor.java:241] [main] Processing chromosome scaffold542 Processing chromosome scaffold542 INFO [2014-03-08 06:27:24,565] [Preprocessor.java:241] [main] Processing chromosome scaffold543 Processing chromosome scaffold543 INFO [2014-03-08 06:27:24,591] [Preprocessor.java:241] [main] Processing chromosome scaffold544 Processing chromosome scaffold544 INFO [2014-03-08 06:27:24,786] [Preprocessor.java:241] [main] Processing chromosome scaffold546 Processing chromosome scaffold546 INFO [2014-03-08 06:27:24,940] [Preprocessor.java:241] [main] Processing chromosome scaffold547 Processing chromosome scaffold547 INFO [2014-03-08 06:27:25,066] [Preprocessor.java:241] [main] Processing chromosome scaffold548 Processing chromosome scaffold548 INFO [2014-03-08 06:27:25,106] [Preprocessor.java:241] [main] Processing chromosome scaffold549 Processing chromosome scaffold549 30.0% INFO [2014-03-08 06:27:25,161] [Preprocessor.java:241] [main] Processing chromosome scaffold55 Processing chromosome scaffold55 INFO [2014-03-08 06:27:25,178] [Preprocessor.java:241] [main] Processing chromosome scaffold550 Processing chromosome scaffold550 INFO [2014-03-08 06:27:25,261] [Preprocessor.java:241] [main] Processing chromosome scaffold551 Processing chromosome scaffold551 INFO [2014-03-08 06:27:25,280] [Preprocessor.java:241] [main] Processing chromosome scaffold552 Processing chromosome scaffold552 INFO [2014-03-08 06:27:25,345] [Preprocessor.java:241] [main] Processing chromosome scaffold554 Processing chromosome scaffold554 INFO [2014-03-08 06:27:25,351] [Preprocessor.java:241] [main] Processing chromosome scaffold556 Processing chromosome scaffold556 INFO [2014-03-08 06:27:25,615] [Preprocessor.java:241] [main] Processing chromosome scaffold557 Processing chromosome scaffold557 INFO [2014-03-08 06:27:25,725] [Preprocessor.java:241] [main] Processing chromosome scaffold558 Processing chromosome scaffold558 INFO [2014-03-08 06:27:25,741] [Preprocessor.java:241] [main] Processing chromosome scaffold559 Processing chromosome scaffold559 INFO [2014-03-08 06:27:25,762] [Preprocessor.java:241] [main] Processing chromosome scaffold560 Processing chromosome scaffold560 INFO [2014-03-08 06:27:25,844] [Preprocessor.java:241] [main] Processing chromosome scaffold562 Processing chromosome scaffold562 INFO [2014-03-08 06:27:25,934] [Preprocessor.java:241] [main] Processing chromosome scaffold563 Processing chromosome scaffold563 INFO [2014-03-08 06:27:26,063] [Preprocessor.java:241] [main] Processing chromosome scaffold564 Processing chromosome scaffold564 INFO [2014-03-08 06:27:26,178] [Preprocessor.java:241] [main] Processing chromosome scaffold565 Processing chromosome scaffold565 INFO [2014-03-08 06:27:26,198] [Preprocessor.java:241] [main] Processing chromosome scaffold568 Processing chromosome scaffold568 INFO [2014-03-08 06:27:26,214] [Preprocessor.java:241] [main] Processing chromosome scaffold569 Processing chromosome scaffold569 INFO [2014-03-08 06:27:26,289] [Preprocessor.java:241] [main] Processing chromosome scaffold57 Processing chromosome scaffold57 INFO [2014-03-08 06:27:26,447] [Preprocessor.java:241] [main] Processing chromosome scaffold570 Processing chromosome scaffold570 INFO [2014-03-08 06:27:26,477] [Preprocessor.java:241] [main] Processing chromosome scaffold572 Processing chromosome scaffold572 INFO [2014-03-08 06:27:26,519] [Preprocessor.java:241] [main] Processing chromosome scaffold574 Processing chromosome scaffold574 INFO [2014-03-08 06:27:26,590] [Preprocessor.java:241] [main] Processing chromosome scaffold575 Processing chromosome scaffold575 INFO [2014-03-08 06:27:26,644] [Preprocessor.java:241] [main] Processing chromosome scaffold576 Processing chromosome scaffold576 INFO [2014-03-08 06:27:26,807] [Preprocessor.java:241] [main] Processing chromosome scaffold577 Processing chromosome scaffold577 INFO [2014-03-08 06:27:26,855] [Preprocessor.java:241] [main] Processing chromosome scaffold578 Processing chromosome scaffold578 INFO [2014-03-08 06:27:27,027] [Preprocessor.java:241] [main] Processing chromosome scaffold579 Processing chromosome scaffold579 INFO [2014-03-08 06:27:27,091] [Preprocessor.java:241] [main] Processing chromosome scaffold58 Processing chromosome scaffold58 INFO [2014-03-08 06:27:27,189] [Preprocessor.java:241] [main] Processing chromosome scaffold580 Processing chromosome scaffold580 INFO [2014-03-08 06:27:27,326] [Preprocessor.java:241] [main] Processing chromosome scaffold581 Processing chromosome scaffold581 INFO [2014-03-08 06:27:27,376] [Preprocessor.java:241] [main] Processing chromosome scaffold582 Processing chromosome scaffold582 INFO [2014-03-08 06:27:27,387] [Preprocessor.java:241] [main] Processing chromosome scaffold583 Processing chromosome scaffold583 INFO [2014-03-08 06:27:27,526] [Preprocessor.java:241] [main] Processing chromosome scaffold585 Processing chromosome scaffold585 INFO [2014-03-08 06:27:27,597] [Preprocessor.java:241] [main] Processing chromosome scaffold586 Processing chromosome scaffold586 INFO [2014-03-08 06:27:27,716] [Preprocessor.java:241] [main] Processing chromosome scaffold587 Processing chromosome scaffold587 INFO [2014-03-08 06:27:27,803] [Preprocessor.java:241] [main] Processing chromosome scaffold588 Processing chromosome scaffold588 INFO [2014-03-08 06:27:27,902] [Preprocessor.java:241] [main] Processing chromosome scaffold589 Processing chromosome scaffold589 INFO [2014-03-08 06:27:27,933] [Preprocessor.java:241] [main] Processing chromosome scaffold59 Processing chromosome scaffold59 INFO [2014-03-08 06:27:27,975] [Preprocessor.java:241] [main] Processing chromosome scaffold591 Processing chromosome scaffold591 .INFO [2014-03-08 06:27:28,194] [Preprocessor.java:241] [main] Processing chromosome scaffold592 Processing chromosome scaffold592 INFO [2014-03-08 06:27:28,254] [Preprocessor.java:241] [main] Processing chromosome scaffold593 Processing chromosome scaffold593 INFO [2014-03-08 06:27:28,377] [Preprocessor.java:241] [main] Processing chromosome scaffold594 Processing chromosome scaffold594 INFO [2014-03-08 06:27:28,510] [Preprocessor.java:241] [main] Processing chromosome scaffold595 Processing chromosome scaffold595 INFO [2014-03-08 06:27:28,527] [Preprocessor.java:241] [main] Processing chromosome scaffold596 Processing chromosome scaffold596 INFO [2014-03-08 06:27:28,630] [Preprocessor.java:241] [main] Processing chromosome scaffold597 Processing chromosome scaffold597 INFO [2014-03-08 06:27:28,667] [Preprocessor.java:241] [main] Processing chromosome scaffold598 Processing chromosome scaffold598 INFO [2014-03-08 06:27:28,694] [Preprocessor.java:241] [main] Processing chromosome scaffold599 Processing chromosome scaffold599 INFO [2014-03-08 06:27:28,788] [Preprocessor.java:241] [main] Processing chromosome scaffold6 Processing chromosome scaffold6 INFO [2014-03-08 06:27:28,886] [Preprocessor.java:241] [main] Processing chromosome scaffold60 Processing chromosome scaffold60 INFO [2014-03-08 06:27:28,921] [Preprocessor.java:241] [main] Processing chromosome scaffold600 Processing chromosome scaffold600 INFO [2014-03-08 06:27:28,943] [Preprocessor.java:241] [main] Processing chromosome scaffold601 Processing chromosome scaffold601 INFO [2014-03-08 06:27:29,129] [Preprocessor.java:241] [main] Processing chromosome scaffold602 Processing chromosome scaffold602 INFO [2014-03-08 06:27:29,331] [Preprocessor.java:241] [main] Processing chromosome scaffold603 Processing chromosome scaffold603 INFO [2014-03-08 06:27:29,375] [Preprocessor.java:241] [main] Processing chromosome scaffold604 Processing chromosome scaffold604 INFO [2014-03-08 06:27:29,437] [Preprocessor.java:241] [main] Processing chromosome scaffold605 Processing chromosome scaffold605 INFO [2014-03-08 06:27:29,463] [Preprocessor.java:241] [main] Processing chromosome scaffold606 Processing chromosome scaffold606 INFO [2014-03-08 06:27:29,497] [Preprocessor.java:241] [main] Processing chromosome scaffold607 Processing chromosome scaffold607 INFO [2014-03-08 06:27:29,518] [Preprocessor.java:241] [main] Processing chromosome scaffold608 Processing chromosome scaffold608 INFO [2014-03-08 06:27:29,562] [Preprocessor.java:241] [main] Processing chromosome scaffold609 Processing chromosome scaffold609 INFO [2014-03-08 06:27:29,615] [Preprocessor.java:241] [main] Processing chromosome scaffold61 Processing chromosome scaffold61 INFO [2014-03-08 06:27:29,681] [Preprocessor.java:241] [main] Processing chromosome scaffold610 Processing chromosome scaffold610 INFO [2014-03-08 06:27:29,861] [Preprocessor.java:241] [main] Processing chromosome scaffold611 Processing chromosome scaffold611 INFO [2014-03-08 06:27:29,876] [Preprocessor.java:241] [main] Processing chromosome scaffold612 Processing chromosome scaffold612 INFO [2014-03-08 06:27:29,946] [Preprocessor.java:241] [main] Processing chromosome scaffold613 Processing chromosome scaffold613 INFO [2014-03-08 06:27:29,952] [Preprocessor.java:241] [main] Processing chromosome scaffold614 Processing chromosome scaffold614 INFO [2014-03-08 06:27:30,061] [Preprocessor.java:241] [main] Processing chromosome scaffold615 Processing chromosome scaffold615 INFO [2014-03-08 06:27:30,082] [Preprocessor.java:241] [main] Processing chromosome scaffold616 Processing chromosome scaffold616 INFO [2014-03-08 06:27:30,176] [Preprocessor.java:241] [main] Processing chromosome scaffold617 Processing chromosome scaffold617 INFO [2014-03-08 06:27:30,291] [Preprocessor.java:241] [main] Processing chromosome scaffold619 Processing chromosome scaffold619 INFO [2014-03-08 06:27:30,498] [Preprocessor.java:241] [main] Processing chromosome scaffold62 Processing chromosome scaffold62 INFO [2014-03-08 06:27:30,598] [Preprocessor.java:241] [main] Processing chromosome scaffold620 Processing chromosome scaffold620 INFO [2014-03-08 06:27:30,622] [Preprocessor.java:241] [main] Processing chromosome scaffold621 Processing chromosome scaffold621 INFO [2014-03-08 06:27:30,709] [Preprocessor.java:241] [main] Processing chromosome scaffold622 Processing chromosome scaffold622 INFO [2014-03-08 06:27:30,826] [Preprocessor.java:241] [main] Processing chromosome scaffold624 Processing chromosome scaffold624 INFO [2014-03-08 06:27:30,849] [Preprocessor.java:241] [main] Processing chromosome scaffold625 Processing chromosome scaffold625 INFO [2014-03-08 06:27:31,168] [Preprocessor.java:241] [main] Processing chromosome scaffold626 Processing chromosome scaffold626 .INFO [2014-03-08 06:27:31,248] [Preprocessor.java:241] [main] Processing chromosome scaffold627 Processing chromosome scaffold627 INFO [2014-03-08 06:27:31,254] [Preprocessor.java:241] [main] Processing chromosome scaffold629 Processing chromosome scaffold629 INFO [2014-03-08 06:27:31,325] [Preprocessor.java:241] [main] Processing chromosome scaffold63 Processing chromosome scaffold63 INFO [2014-03-08 06:27:31,402] [Preprocessor.java:241] [main] Processing chromosome scaffold630 Processing chromosome scaffold630 INFO [2014-03-08 06:27:31,524] [Preprocessor.java:241] [main] Processing chromosome scaffold631 Processing chromosome scaffold631 INFO [2014-03-08 06:27:31,625] [Preprocessor.java:241] [main] Processing chromosome scaffold632 Processing chromosome scaffold632 INFO [2014-03-08 06:27:31,758] [Preprocessor.java:241] [main] Processing chromosome scaffold633 Processing chromosome scaffold633 INFO [2014-03-08 06:27:31,781] [Preprocessor.java:241] [main] Processing chromosome scaffold634 Processing chromosome scaffold634 INFO [2014-03-08 06:27:31,793] [Preprocessor.java:241] [main] Processing chromosome scaffold635 Processing chromosome scaffold635 INFO [2014-03-08 06:27:31,831] [Preprocessor.java:241] [main] Processing chromosome scaffold636 Processing chromosome scaffold636 INFO [2014-03-08 06:27:31,855] [Preprocessor.java:241] [main] Processing chromosome scaffold638 Processing chromosome scaffold638 INFO [2014-03-08 06:27:31,871] [Preprocessor.java:241] [main] Processing chromosome scaffold639 Processing chromosome scaffold639 INFO [2014-03-08 06:27:31,892] [Preprocessor.java:241] [main] Processing chromosome scaffold64 Processing chromosome scaffold64 INFO [2014-03-08 06:27:31,941] [Preprocessor.java:241] [main] Processing chromosome scaffold640 Processing chromosome scaffold640 INFO [2014-03-08 06:27:32,000] [Preprocessor.java:241] [main] Processing chromosome scaffold641 Processing chromosome scaffold641 INFO [2014-03-08 06:27:32,008] [Preprocessor.java:241] [main] Processing chromosome scaffold642 Processing chromosome scaffold642 INFO [2014-03-08 06:27:32,031] [Preprocessor.java:241] [main] Processing chromosome scaffold643 Processing chromosome scaffold643 INFO [2014-03-08 06:27:32,058] [Preprocessor.java:241] [main] Processing chromosome scaffold644 Processing chromosome scaffold644 INFO [2014-03-08 06:27:32,073] [Preprocessor.java:241] [main] Processing chromosome scaffold645 Processing chromosome scaffold645 INFO [2014-03-08 06:27:32,084] [Preprocessor.java:241] [main] Processing chromosome scaffold646 Processing chromosome scaffold646 INFO [2014-03-08 06:27:32,094] [Preprocessor.java:241] [main] Processing chromosome scaffold647 Processing chromosome scaffold647 INFO [2014-03-08 06:27:32,145] [Preprocessor.java:241] [main] Processing chromosome scaffold649 Processing chromosome scaffold649 INFO [2014-03-08 06:27:32,158] [Preprocessor.java:241] [main] Processing chromosome scaffold65 Processing chromosome scaffold65 INFO [2014-03-08 06:27:32,205] [Preprocessor.java:241] [main] Processing chromosome scaffold650 Processing chromosome scaffold650 INFO [2014-03-08 06:27:32,231] [Preprocessor.java:241] [main] Processing chromosome scaffold654 Processing chromosome scaffold654 INFO [2014-03-08 06:27:32,263] [Preprocessor.java:241] [main] Processing chromosome scaffold655 Processing chromosome scaffold655 INFO [2014-03-08 06:27:32,381] [Preprocessor.java:241] [main] Processing chromosome scaffold657 Processing chromosome scaffold657 INFO [2014-03-08 06:27:32,406] [Preprocessor.java:241] [main] Processing chromosome scaffold658 Processing chromosome scaffold658 INFO [2014-03-08 06:27:32,461] [Preprocessor.java:241] [main] Processing chromosome scaffold659 Processing chromosome scaffold659 INFO [2014-03-08 06:27:32,560] [Preprocessor.java:241] [main] Processing chromosome scaffold66 Processing chromosome scaffold66 INFO [2014-03-08 06:27:32,580] [Preprocessor.java:241] [main] Processing chromosome scaffold660 Processing chromosome scaffold660 INFO [2014-03-08 06:27:32,677] [Preprocessor.java:241] [main] Processing chromosome scaffold661 Processing chromosome scaffold661 INFO [2014-03-08 06:27:32,690] [Preprocessor.java:241] [main] Processing chromosome scaffold662 Processing chromosome scaffold662 INFO [2014-03-08 06:27:32,700] [Preprocessor.java:241] [main] Processing chromosome scaffold663 Processing chromosome scaffold663 INFO [2014-03-08 06:27:32,750] [Preprocessor.java:241] [main] Processing chromosome scaffold664 Processing chromosome scaffold664 INFO [2014-03-08 06:27:32,815] [Preprocessor.java:241] [main] Processing chromosome scaffold665 Processing chromosome scaffold665 INFO [2014-03-08 06:27:32,891] [Preprocessor.java:241] [main] Processing chromosome scaffold666 Processing chromosome scaffold666 INFO [2014-03-08 06:27:32,897] [Preprocessor.java:241] [main] Processing chromosome scaffold667 Processing chromosome scaffold667 INFO [2014-03-08 06:27:32,923] [Preprocessor.java:241] [main] Processing chromosome scaffold668 Processing chromosome scaffold668 INFO [2014-03-08 06:27:32,938] [Preprocessor.java:241] [main] Processing chromosome scaffold669 Processing chromosome scaffold669 INFO [2014-03-08 06:27:32,949] [Preprocessor.java:241] [main] Processing chromosome scaffold67 Processing chromosome scaffold67 INFO [2014-03-08 06:27:33,032] [Preprocessor.java:241] [main] Processing chromosome scaffold670 Processing chromosome scaffold670 INFO [2014-03-08 06:27:33,077] [Preprocessor.java:241] [main] Processing chromosome scaffold671 Processing chromosome scaffold671 INFO [2014-03-08 06:27:33,088] [Preprocessor.java:241] [main] Processing chromosome scaffold672 Processing chromosome scaffold672 INFO [2014-03-08 06:27:33,174] [Preprocessor.java:241] [main] Processing chromosome scaffold673 Processing chromosome scaffold673 INFO [2014-03-08 06:27:33,221] [Preprocessor.java:241] [main] Processing chromosome scaffold674 Processing chromosome scaffold674 INFO [2014-03-08 06:27:33,243] [Preprocessor.java:241] [main] Processing chromosome scaffold675 Processing chromosome scaffold675 INFO [2014-03-08 06:27:33,365] [Preprocessor.java:241] [main] Processing chromosome scaffold676 Processing chromosome scaffold676 INFO [2014-03-08 06:27:33,438] [Preprocessor.java:241] [main] Processing chromosome scaffold677 Processing chromosome scaffold677 INFO [2014-03-08 06:27:33,484] [Preprocessor.java:241] [main] Processing chromosome scaffold678 Processing chromosome scaffold678 INFO [2014-03-08 06:27:33,678] [Preprocessor.java:241] [main] Processing chromosome scaffold679 Processing chromosome scaffold679 INFO [2014-03-08 06:27:33,701] [Preprocessor.java:241] [main] Processing chromosome scaffold68 Processing chromosome scaffold68 INFO [2014-03-08 06:27:33,711] [Preprocessor.java:241] [main] Processing chromosome scaffold680 Processing chromosome scaffold680 INFO [2014-03-08 06:27:33,726] [Preprocessor.java:241] [main] Processing chromosome scaffold681 Processing chromosome scaffold681 INFO [2014-03-08 06:27:33,784] [Preprocessor.java:241] [main] Processing chromosome scaffold682 Processing chromosome scaffold682 INFO [2014-03-08 06:27:33,819] [Preprocessor.java:241] [main] Processing chromosome scaffold683 Processing chromosome scaffold683 INFO [2014-03-08 06:27:33,873] [Preprocessor.java:241] [main] Processing chromosome scaffold685 Processing chromosome scaffold685 INFO [2014-03-08 06:27:33,918] [Preprocessor.java:241] [main] Processing chromosome scaffold686 Processing chromosome scaffold686 INFO [2014-03-08 06:27:33,945] [Preprocessor.java:241] [main] Processing chromosome scaffold687 Processing chromosome scaffold687 INFO [2014-03-08 06:27:33,983] [Preprocessor.java:241] [main] Processing chromosome scaffold688 Processing chromosome scaffold688 INFO [2014-03-08 06:27:33,989] [Preprocessor.java:241] [main] Processing chromosome scaffold689 Processing chromosome scaffold689 INFO [2014-03-08 06:27:34,036] [Preprocessor.java:241] [main] Processing chromosome scaffold69 Processing chromosome scaffold69 INFO [2014-03-08 06:27:34,062] [Preprocessor.java:241] [main] Processing chromosome scaffold690 Processing chromosome scaffold690 INFO [2014-03-08 06:27:34,087] [Preprocessor.java:241] [main] Processing chromosome scaffold693 Processing chromosome scaffold693 INFO [2014-03-08 06:27:34,094] [Preprocessor.java:241] [main] Processing chromosome scaffold694 Processing chromosome scaffold694 INFO [2014-03-08 06:27:34,129] [Preprocessor.java:241] [main] Processing chromosome scaffold695 Processing chromosome scaffold695 INFO [2014-03-08 06:27:34,307] [Preprocessor.java:241] [main] Processing chromosome scaffold696 Processing chromosome scaffold696 INFO [2014-03-08 06:27:34,364] [Preprocessor.java:241] [main] Processing chromosome scaffold698 Processing chromosome scaffold698 INFO [2014-03-08 06:27:34,466] [Preprocessor.java:241] [main] Processing chromosome scaffold7 Processing chromosome scaffold7 INFO [2014-03-08 06:27:34,475] [Preprocessor.java:241] [main] Processing chromosome scaffold70 Processing chromosome scaffold70 INFO [2014-03-08 06:27:34,645] [Preprocessor.java:241] [main] Processing chromosome scaffold700 Processing chromosome scaffold700 INFO [2014-03-08 06:27:34,666] [Preprocessor.java:241] [main] Processing chromosome scaffold701 Processing chromosome scaffold701 INFO [2014-03-08 06:27:34,669] [Preprocessor.java:241] [main] Processing chromosome scaffold702 Processing chromosome scaffold702 INFO [2014-03-08 06:27:34,672] [Preprocessor.java:241] [main] Processing chromosome scaffold703 Processing chromosome scaffold703 INFO [2014-03-08 06:27:34,682] [Preprocessor.java:241] [main] Processing chromosome scaffold705 Processing chromosome scaffold705 .INFO [2014-03-08 06:27:34,782] [Preprocessor.java:241] [main] Processing chromosome scaffold706 Processing chromosome scaffold706 INFO [2014-03-08 06:27:34,818] [Preprocessor.java:241] [main] Processing chromosome scaffold707 Processing chromosome scaffold707 INFO [2014-03-08 06:27:34,861] [Preprocessor.java:241] [main] Processing chromosome scaffold709 Processing chromosome scaffold709 INFO [2014-03-08 06:27:34,935] [Preprocessor.java:241] [main] Processing chromosome scaffold71 Processing chromosome scaffold71 INFO [2014-03-08 06:27:35,013] [Preprocessor.java:241] [main] Processing chromosome scaffold710 Processing chromosome scaffold710 INFO [2014-03-08 06:27:35,020] [Preprocessor.java:241] [main] Processing chromosome scaffold711 Processing chromosome scaffold711 INFO [2014-03-08 06:27:35,041] [Preprocessor.java:241] [main] Processing chromosome scaffold712 Processing chromosome scaffold712 INFO [2014-03-08 06:27:35,129] [Preprocessor.java:241] [main] Processing chromosome scaffold713 Processing chromosome scaffold713 INFO [2014-03-08 06:27:35,243] [Preprocessor.java:241] [main] Processing chromosome scaffold714 Processing chromosome scaffold714 INFO [2014-03-08 06:27:35,296] [Preprocessor.java:241] [main] Processing chromosome scaffold715 Processing chromosome scaffold715 INFO [2014-03-08 06:27:35,325] [Preprocessor.java:241] [main] Processing chromosome scaffold716 Processing chromosome scaffold716 INFO [2014-03-08 06:27:35,411] [Preprocessor.java:241] [main] Processing chromosome scaffold718 Processing chromosome scaffold718 INFO [2014-03-08 06:27:35,464] [Preprocessor.java:241] [main] Processing chromosome scaffold719 Processing chromosome scaffold719 INFO [2014-03-08 06:27:35,495] [Preprocessor.java:241] [main] Processing chromosome scaffold72 Processing chromosome scaffold72 INFO [2014-03-08 06:27:35,541] [Preprocessor.java:241] [main] Processing chromosome scaffold720 Processing chromosome scaffold720 INFO [2014-03-08 06:27:35,585] [Preprocessor.java:241] [main] Processing chromosome scaffold721 Processing chromosome scaffold721 INFO [2014-03-08 06:27:35,731] [Preprocessor.java:241] [main] Processing chromosome scaffold722 Processing chromosome scaffold722 INFO [2014-03-08 06:27:35,851] [Preprocessor.java:241] [main] Processing chromosome scaffold723 Processing chromosome scaffold723 INFO [2014-03-08 06:27:35,924] [Preprocessor.java:241] [main] Processing chromosome scaffold724 Processing chromosome scaffold724 INFO [2014-03-08 06:27:35,965] [Preprocessor.java:241] [main] Processing chromosome scaffold726 Processing chromosome scaffold726 INFO [2014-03-08 06:27:36,068] [Preprocessor.java:241] [main] Processing chromosome scaffold727 Processing chromosome scaffold727 INFO [2014-03-08 06:27:36,117] [Preprocessor.java:241] [main] Processing chromosome scaffold728 Processing chromosome scaffold728 INFO [2014-03-08 06:27:36,236] [Preprocessor.java:241] [main] Processing chromosome scaffold729 Processing chromosome scaffold729 INFO [2014-03-08 06:27:36,251] [Preprocessor.java:241] [main] Processing chromosome scaffold73 Processing chromosome scaffold73 INFO [2014-03-08 06:27:36,264] [Preprocessor.java:241] [main] Processing chromosome scaffold730 Processing chromosome scaffold730 INFO [2014-03-08 06:27:36,374] [Preprocessor.java:241] [main] Processing chromosome scaffold733 Processing chromosome scaffold733 INFO [2014-03-08 06:27:36,510] [Preprocessor.java:241] [main] Processing chromosome scaffold734 Processing chromosome scaffold734 INFO [2014-03-08 06:27:36,526] [Preprocessor.java:241] [main] Processing chromosome scaffold735 Processing chromosome scaffold735 INFO [2014-03-08 06:27:36,546] [Preprocessor.java:241] [main] Processing chromosome scaffold736 Processing chromosome scaffold736 INFO [2014-03-08 06:27:36,576] [Preprocessor.java:241] [main] Processing chromosome scaffold737 Processing chromosome scaffold737 INFO [2014-03-08 06:27:36,666] [Preprocessor.java:241] [main] Processing chromosome scaffold738 Processing chromosome scaffold738 INFO [2014-03-08 06:27:36,699] [Preprocessor.java:241] [main] Processing chromosome scaffold739 Processing chromosome scaffold739 INFO [2014-03-08 06:27:36,710] [Preprocessor.java:241] [main] Processing chromosome scaffold74 Processing chromosome scaffold74 INFO [2014-03-08 06:27:36,721] [Preprocessor.java:241] [main] Processing chromosome scaffold742 Processing chromosome scaffold742 INFO [2014-03-08 06:27:36,729] [Preprocessor.java:241] [main] Processing chromosome scaffold743 Processing chromosome scaffold743 INFO [2014-03-08 06:27:36,771] [Preprocessor.java:241] [main] Processing chromosome scaffold744 Processing chromosome scaffold744 INFO [2014-03-08 06:27:36,802] [Preprocessor.java:241] [main] Processing chromosome scaffold745 Processing chromosome scaffold745 INFO [2014-03-08 06:27:36,806] [Preprocessor.java:241] [main] Processing chromosome scaffold746 Processing chromosome scaffold746 INFO [2014-03-08 06:27:36,809] [Preprocessor.java:241] [main] Processing chromosome scaffold747 Processing chromosome scaffold747 INFO [2014-03-08 06:27:36,888] [Preprocessor.java:241] [main] Processing chromosome scaffold748 Processing chromosome scaffold748 INFO [2014-03-08 06:27:37,037] [Preprocessor.java:241] [main] Processing chromosome scaffold749 Processing chromosome scaffold749 INFO [2014-03-08 06:27:37,091] [Preprocessor.java:241] [main] Processing chromosome scaffold75 Processing chromosome scaffold75 INFO [2014-03-08 06:27:37,154] [Preprocessor.java:241] [main] Processing chromosome scaffold750 Processing chromosome scaffold750 INFO [2014-03-08 06:27:37,289] [Preprocessor.java:241] [main] Processing chromosome scaffold751 Processing chromosome scaffold751 INFO [2014-03-08 06:27:37,415] [Preprocessor.java:241] [main] Processing chromosome scaffold752 Processing chromosome scaffold752 INFO [2014-03-08 06:27:37,469] [Preprocessor.java:241] [main] Processing chromosome scaffold753 Processing chromosome scaffold753 INFO [2014-03-08 06:27:37,599] [Preprocessor.java:241] [main] Processing chromosome scaffold754 Processing chromosome scaffold754 INFO [2014-03-08 06:27:37,688] [Preprocessor.java:241] [main] Processing chromosome scaffold756 Processing chromosome scaffold756 INFO [2014-03-08 06:27:37,762] [Preprocessor.java:241] [main] Processing chromosome scaffold758 Processing chromosome scaffold758 INFO [2014-03-08 06:27:37,814] [Preprocessor.java:241] [main] Processing chromosome scaffold759 Processing chromosome scaffold759 INFO [2014-03-08 06:27:37,873] [Preprocessor.java:241] [main] Processing chromosome scaffold76 Processing chromosome scaffold76 INFO [2014-03-08 06:27:37,942] [Preprocessor.java:241] [main] Processing chromosome scaffold760 Processing chromosome scaffold760 INFO [2014-03-08 06:27:38,115] [Preprocessor.java:241] [main] Processing chromosome scaffold761 Processing chromosome scaffold761 INFO [2014-03-08 06:27:38,129] [Preprocessor.java:241] [main] Processing chromosome scaffold762 Processing chromosome scaffold762 INFO [2014-03-08 06:27:38,165] [Preprocessor.java:241] [main] Processing chromosome scaffold763 Processing chromosome scaffold763 INFO [2014-03-08 06:27:38,183] [Preprocessor.java:241] [main] Processing chromosome scaffold764 Processing chromosome scaffold764 INFO [2014-03-08 06:27:38,196] [Preprocessor.java:241] [main] Processing chromosome scaffold765 Processing chromosome scaffold765 INFO [2014-03-08 06:27:38,309] [Preprocessor.java:241] [main] Processing chromosome scaffold766 Processing chromosome scaffold766 INFO [2014-03-08 06:27:38,338] [Preprocessor.java:241] [main] Processing chromosome scaffold767 Processing chromosome scaffold767 INFO [2014-03-08 06:27:38,413] [Preprocessor.java:241] [main] Processing chromosome scaffold769 Processing chromosome scaffold769 INFO [2014-03-08 06:27:38,421] [Preprocessor.java:241] [main] Processing chromosome scaffold77 Processing chromosome scaffold77 .INFO [2014-03-08 06:27:38,633] [Preprocessor.java:241] [main] Processing chromosome scaffold770 Processing chromosome scaffold770 INFO [2014-03-08 06:27:38,658] [Preprocessor.java:241] [main] Processing chromosome scaffold771 Processing chromosome scaffold771 INFO [2014-03-08 06:27:38,807] [Preprocessor.java:241] [main] Processing chromosome scaffold772 Processing chromosome scaffold772 INFO [2014-03-08 06:27:38,872] [Preprocessor.java:241] [main] Processing chromosome scaffold773 Processing chromosome scaffold773 INFO [2014-03-08 06:27:38,914] [Preprocessor.java:241] [main] Processing chromosome scaffold775 Processing chromosome scaffold775 INFO [2014-03-08 06:27:38,962] [Preprocessor.java:241] [main] Processing chromosome scaffold776 Processing chromosome scaffold776 INFO [2014-03-08 06:27:38,971] [Preprocessor.java:241] [main] Processing chromosome scaffold778 Processing chromosome scaffold778 INFO [2014-03-08 06:27:38,976] [Preprocessor.java:241] [main] Processing chromosome scaffold78 Processing chromosome scaffold78 INFO [2014-03-08 06:27:39,012] [Preprocessor.java:241] [main] Processing chromosome scaffold780 Processing chromosome scaffold780 INFO [2014-03-08 06:27:39,123] [Preprocessor.java:241] [main] Processing chromosome scaffold781 Processing chromosome scaffold781 INFO [2014-03-08 06:27:39,132] [Preprocessor.java:241] [main] Processing chromosome scaffold782 Processing chromosome scaffold782 INFO [2014-03-08 06:27:39,224] [Preprocessor.java:241] [main] Processing chromosome scaffold783 Processing chromosome scaffold783 INFO [2014-03-08 06:27:39,289] [Preprocessor.java:241] [main] Processing chromosome scaffold784 Processing chromosome scaffold784 INFO [2014-03-08 06:27:39,382] [Preprocessor.java:241] [main] Processing chromosome scaffold786 Processing chromosome scaffold786 INFO [2014-03-08 06:27:39,494] [Preprocessor.java:241] [main] Processing chromosome scaffold787 Processing chromosome scaffold787 INFO [2014-03-08 06:27:39,587] [Preprocessor.java:241] [main] Processing chromosome scaffold788 Processing chromosome scaffold788 INFO [2014-03-08 06:27:39,606] [Preprocessor.java:241] [main] Processing chromosome scaffold789 Processing chromosome scaffold789 INFO [2014-03-08 06:27:39,733] [Preprocessor.java:241] [main] Processing chromosome scaffold79 Processing chromosome scaffold79 INFO [2014-03-08 06:27:39,909] [Preprocessor.java:241] [main] Processing chromosome scaffold790 Processing chromosome scaffold790 INFO [2014-03-08 06:27:39,985] [Preprocessor.java:241] [main] Processing chromosome scaffold792 Processing chromosome scaffold792 INFO [2014-03-08 06:27:39,987] [Preprocessor.java:241] [main] Processing chromosome scaffold793 Processing chromosome scaffold793 INFO [2014-03-08 06:27:40,037] [Preprocessor.java:241] [main] Processing chromosome scaffold794 Processing chromosome scaffold794 INFO [2014-03-08 06:27:40,130] [Preprocessor.java:241] [main] Processing chromosome scaffold795 Processing chromosome scaffold795 INFO [2014-03-08 06:27:40,159] [Preprocessor.java:241] [main] Processing chromosome scaffold796 Processing chromosome scaffold796 INFO [2014-03-08 06:27:40,188] [Preprocessor.java:241] [main] Processing chromosome scaffold797 Processing chromosome scaffold797 INFO [2014-03-08 06:27:40,200] [Preprocessor.java:241] [main] Processing chromosome scaffold799 Processing chromosome scaffold799 INFO [2014-03-08 06:27:40,238] [Preprocessor.java:241] [main] Processing chromosome scaffold8 Processing chromosome scaffold8 INFO [2014-03-08 06:27:40,272] [Preprocessor.java:241] [main] Processing chromosome scaffold80 Processing chromosome scaffold80 INFO [2014-03-08 06:27:40,286] [Preprocessor.java:241] [main] Processing chromosome scaffold801 Processing chromosome scaffold801 INFO [2014-03-08 06:27:40,434] [Preprocessor.java:241] [main] Processing chromosome scaffold802 Processing chromosome scaffold802 INFO [2014-03-08 06:27:40,528] [Preprocessor.java:241] [main] Processing chromosome scaffold803 Processing chromosome scaffold803 INFO [2014-03-08 06:27:40,554] [Preprocessor.java:241] [main] Processing chromosome scaffold804 Processing chromosome scaffold804 INFO [2014-03-08 06:27:40,583] [Preprocessor.java:241] [main] Processing chromosome scaffold805 Processing chromosome scaffold805 INFO [2014-03-08 06:27:40,594] [Preprocessor.java:241] [main] Processing chromosome scaffold806 Processing chromosome scaffold806 INFO [2014-03-08 06:27:40,631] [Preprocessor.java:241] [main] Processing chromosome scaffold807 Processing chromosome scaffold807 INFO [2014-03-08 06:27:40,667] [Preprocessor.java:241] [main] Processing chromosome scaffold808 Processing chromosome scaffold808 INFO [2014-03-08 06:27:40,744] [Preprocessor.java:241] [main] Processing chromosome scaffold809 Processing chromosome scaffold809 INFO [2014-03-08 06:27:40,765] [Preprocessor.java:241] [main] Processing chromosome scaffold81 Processing chromosome scaffold81 INFO [2014-03-08 06:27:40,785] [Preprocessor.java:241] [main] Processing chromosome scaffold810 Processing chromosome scaffold810 INFO [2014-03-08 06:27:40,816] [Preprocessor.java:241] [main] Processing chromosome scaffold811 Processing chromosome scaffold811 INFO [2014-03-08 06:27:40,841] [Preprocessor.java:241] [main] Processing chromosome scaffold812 Processing chromosome scaffold812 INFO [2014-03-08 06:27:40,857] [Preprocessor.java:241] [main] Processing chromosome scaffold814 Processing chromosome scaffold814 INFO [2014-03-08 06:27:40,899] [Preprocessor.java:241] [main] Processing chromosome scaffold815 Processing chromosome scaffold815 INFO [2014-03-08 06:27:40,909] [Preprocessor.java:241] [main] Processing chromosome scaffold816 Processing chromosome scaffold816 INFO [2014-03-08 06:27:40,930] [Preprocessor.java:241] [main] Processing chromosome scaffold817 Processing chromosome scaffold817 INFO [2014-03-08 06:27:40,998] [Preprocessor.java:241] [main] Processing chromosome scaffold818 Processing chromosome scaffold818 INFO [2014-03-08 06:27:41,047] [Preprocessor.java:241] [main] Processing chromosome scaffold819 Processing chromosome scaffold819 INFO [2014-03-08 06:27:41,076] [Preprocessor.java:241] [main] Processing chromosome scaffold82 Processing chromosome scaffold82 INFO [2014-03-08 06:27:41,245] [Preprocessor.java:241] [main] Processing chromosome scaffold820 Processing chromosome scaffold820 INFO [2014-03-08 06:27:41,272] [Preprocessor.java:241] [main] Processing chromosome scaffold821 Processing chromosome scaffold821 INFO [2014-03-08 06:27:41,278] [Preprocessor.java:241] [main] Processing chromosome scaffold822 Processing chromosome scaffold822 INFO [2014-03-08 06:27:41,292] [Preprocessor.java:241] [main] Processing chromosome scaffold823 Processing chromosome scaffold823 INFO [2014-03-08 06:27:41,309] [Preprocessor.java:241] [main] Processing chromosome scaffold824 Processing chromosome scaffold824 INFO [2014-03-08 06:27:41,317] [Preprocessor.java:241] [main] Processing chromosome scaffold825 Processing chromosome scaffold825 INFO [2014-03-08 06:27:41,411] [Preprocessor.java:241] [main] Processing chromosome scaffold826 Processing chromosome scaffold826 INFO [2014-03-08 06:27:41,433] [Preprocessor.java:241] [main] Processing chromosome scaffold827 Processing chromosome scaffold827 INFO [2014-03-08 06:27:41,480] [Preprocessor.java:241] [main] Processing chromosome scaffold828 Processing chromosome scaffold828 INFO [2014-03-08 06:27:41,529] [Preprocessor.java:241] [main] Processing chromosome scaffold829 Processing chromosome scaffold829 INFO [2014-03-08 06:27:41,577] [Preprocessor.java:241] [main] Processing chromosome scaffold83 Processing chromosome scaffold83 INFO [2014-03-08 06:27:41,591] [Preprocessor.java:241] [main] Processing chromosome scaffold831 Processing chromosome scaffold831 INFO [2014-03-08 06:27:41,642] [Preprocessor.java:241] [main] Processing chromosome scaffold833 Processing chromosome scaffold833 INFO [2014-03-08 06:27:41,693] [Preprocessor.java:241] [main] Processing chromosome scaffold834 Processing chromosome scaffold834 INFO [2014-03-08 06:27:41,729] [Preprocessor.java:241] [main] Processing chromosome scaffold835 Processing chromosome scaffold835 .INFO [2014-03-08 06:27:41,814] [Preprocessor.java:241] [main] Processing chromosome scaffold836 Processing chromosome scaffold836 INFO [2014-03-08 06:27:41,870] [Preprocessor.java:241] [main] Processing chromosome scaffold837 Processing chromosome scaffold837 INFO [2014-03-08 06:27:41,931] [Preprocessor.java:241] [main] Processing chromosome scaffold838 Processing chromosome scaffold838 INFO [2014-03-08 06:27:41,963] [Preprocessor.java:241] [main] Processing chromosome scaffold839 Processing chromosome scaffold839 INFO [2014-03-08 06:27:42,003] [Preprocessor.java:241] [main] Processing chromosome scaffold84 Processing chromosome scaffold84 INFO [2014-03-08 06:27:42,025] [Preprocessor.java:241] [main] Processing chromosome scaffold841 Processing chromosome scaffold841 INFO [2014-03-08 06:27:42,031] [Preprocessor.java:241] [main] Processing chromosome scaffold842 Processing chromosome scaffold842 INFO [2014-03-08 06:27:42,042] [Preprocessor.java:241] [main] Processing chromosome scaffold843 Processing chromosome scaffold843 INFO [2014-03-08 06:27:42,066] [Preprocessor.java:241] [main] Processing chromosome scaffold844 Processing chromosome scaffold844 INFO [2014-03-08 06:27:42,072] [Preprocessor.java:241] [main] Processing chromosome scaffold845 Processing chromosome scaffold845 INFO [2014-03-08 06:27:42,089] [Preprocessor.java:241] [main] Processing chromosome scaffold847 Processing chromosome scaffold847 INFO [2014-03-08 06:27:42,180] [Preprocessor.java:241] [main] Processing chromosome scaffold848 Processing chromosome scaffold848 INFO [2014-03-08 06:27:42,185] [Preprocessor.java:241] [main] Processing chromosome scaffold849 Processing chromosome scaffold849 INFO [2014-03-08 06:27:42,189] [Preprocessor.java:241] [main] Processing chromosome scaffold85 Processing chromosome scaffold85 INFO [2014-03-08 06:27:42,305] [Preprocessor.java:241] [main] Processing chromosome scaffold850 Processing chromosome scaffold850 INFO [2014-03-08 06:27:42,363] [Preprocessor.java:241] [main] Processing chromosome scaffold852 Processing chromosome scaffold852 INFO [2014-03-08 06:27:42,417] [Preprocessor.java:241] [main] Processing chromosome scaffold853 Processing chromosome scaffold853 INFO [2014-03-08 06:27:42,565] [Preprocessor.java:241] [main] Processing chromosome scaffold854 Processing chromosome scaffold854 INFO [2014-03-08 06:27:42,719] [Preprocessor.java:241] [main] Processing chromosome scaffold855 Processing chromosome scaffold855 INFO [2014-03-08 06:27:42,740] [Preprocessor.java:241] [main] Processing chromosome scaffold857 Processing chromosome scaffold857 INFO [2014-03-08 06:27:42,801] [Preprocessor.java:241] [main] Processing chromosome scaffold858 Processing chromosome scaffold858 INFO [2014-03-08 06:27:42,874] [Preprocessor.java:241] [main] Processing chromosome scaffold859 Processing chromosome scaffold859 INFO [2014-03-08 06:27:42,895] [Preprocessor.java:241] [main] Processing chromosome scaffold86 Processing chromosome scaffold86 INFO [2014-03-08 06:27:43,182] [Preprocessor.java:241] [main] Processing chromosome scaffold860 Processing chromosome scaffold860 INFO [2014-03-08 06:27:43,206] [Preprocessor.java:241] [main] Processing chromosome scaffold862 Processing chromosome scaffold862 INFO [2014-03-08 06:27:43,224] [Preprocessor.java:241] [main] Processing chromosome scaffold863 Processing chromosome scaffold863 INFO [2014-03-08 06:27:43,228] [Preprocessor.java:241] [main] Processing chromosome scaffold864 Processing chromosome scaffold864 INFO [2014-03-08 06:27:43,242] [Preprocessor.java:241] [main] Processing chromosome scaffold865 Processing chromosome scaffold865 INFO [2014-03-08 06:27:43,255] [Preprocessor.java:241] [main] Processing chromosome scaffold866 Processing chromosome scaffold866 INFO [2014-03-08 06:27:43,285] [Preprocessor.java:241] [main] Processing chromosome scaffold867 Processing chromosome scaffold867 INFO [2014-03-08 06:27:43,484] [Preprocessor.java:241] [main] Processing chromosome scaffold868 Processing chromosome scaffold868 INFO [2014-03-08 06:27:43,539] [Preprocessor.java:241] [main] Processing chromosome scaffold87 Processing chromosome scaffold87 INFO [2014-03-08 06:27:43,558] [Preprocessor.java:241] [main] Processing chromosome scaffold870 Processing chromosome scaffold870 INFO [2014-03-08 06:27:43,609] [Preprocessor.java:241] [main] Processing chromosome scaffold872 Processing chromosome scaffold872 INFO [2014-03-08 06:27:43,660] [Preprocessor.java:241] [main] Processing chromosome scaffold873 Processing chromosome scaffold873 INFO [2014-03-08 06:27:43,734] [Preprocessor.java:241] [main] Processing chromosome scaffold874 Processing chromosome scaffold874 INFO [2014-03-08 06:27:43,787] [Preprocessor.java:241] [main] Processing chromosome scaffold875 Processing chromosome scaffold875 INFO [2014-03-08 06:27:43,811] [Preprocessor.java:241] [main] Processing chromosome scaffold876 Processing chromosome scaffold876 INFO [2014-03-08 06:27:43,829] [Preprocessor.java:241] [main] Processing chromosome scaffold878 Processing chromosome scaffold878 INFO [2014-03-08 06:27:43,838] [Preprocessor.java:241] [main] Processing chromosome scaffold879 Processing chromosome scaffold879 INFO [2014-03-08 06:27:43,851] [Preprocessor.java:241] [main] Processing chromosome scaffold88 Processing chromosome scaffold88 INFO [2014-03-08 06:27:43,888] [Preprocessor.java:241] [main] Processing chromosome scaffold880 Processing chromosome scaffold880 INFO [2014-03-08 06:27:44,030] [Preprocessor.java:241] [main] Processing chromosome scaffold881 Processing chromosome scaffold881 INFO [2014-03-08 06:27:44,036] [Preprocessor.java:241] [main] Processing chromosome scaffold883 Processing chromosome scaffold883 INFO [2014-03-08 06:27:44,059] [Preprocessor.java:241] [main] Processing chromosome scaffold884 Processing chromosome scaffold884 INFO [2014-03-08 06:27:44,117] [Preprocessor.java:241] [main] Processing chromosome scaffold885 Processing chromosome scaffold885 INFO [2014-03-08 06:27:44,301] [Preprocessor.java:241] [main] Processing chromosome scaffold886 Processing chromosome scaffold886 INFO [2014-03-08 06:27:44,318] [Preprocessor.java:241] [main] Processing chromosome scaffold888 Processing chromosome scaffold888 INFO [2014-03-08 06:27:44,422] [Preprocessor.java:241] [main] Processing chromosome scaffold889 Processing chromosome scaffold889 INFO [2014-03-08 06:27:44,436] [Preprocessor.java:241] [main] Processing chromosome scaffold89 Processing chromosome scaffold89 INFO [2014-03-08 06:27:44,456] [Preprocessor.java:241] [main] Processing chromosome scaffold890 Processing chromosome scaffold890 INFO [2014-03-08 06:27:44,618] [Preprocessor.java:241] [main] Processing chromosome scaffold891 Processing chromosome scaffold891 INFO [2014-03-08 06:27:44,670] [Preprocessor.java:241] [main] Processing chromosome scaffold892 Processing chromosome scaffold892 INFO [2014-03-08 06:27:44,729] [Preprocessor.java:241] [main] Processing chromosome scaffold893 Processing chromosome scaffold893 INFO [2014-03-08 06:27:44,764] [Preprocessor.java:241] [main] Processing chromosome scaffold894 Processing chromosome scaffold894 INFO [2014-03-08 06:27:44,802] [Preprocessor.java:241] [main] Processing chromosome scaffold895 Processing chromosome scaffold895 INFO [2014-03-08 06:27:44,835] [Preprocessor.java:241] [main] Processing chromosome scaffold896 Processing chromosome scaffold896 INFO [2014-03-08 06:27:44,932] [Preprocessor.java:241] [main] Processing chromosome scaffold898 Processing chromosome scaffold898 INFO [2014-03-08 06:27:44,957] [Preprocessor.java:241] [main] Processing chromosome scaffold899 Processing chromosome scaffold899 INFO [2014-03-08 06:27:44,981] [Preprocessor.java:241] [main] Processing chromosome scaffold9 Processing chromosome scaffold9 INFO [2014-03-08 06:27:45,004] [Preprocessor.java:241] [main] Processing chromosome scaffold90 Processing chromosome scaffold90 INFO [2014-03-08 06:27:45,036] [Preprocessor.java:241] [main] Processing chromosome scaffold900 Processing chromosome scaffold900 INFO [2014-03-08 06:27:45,047] [Preprocessor.java:241] [main] Processing chromosome scaffold901 Processing chromosome scaffold901 INFO [2014-03-08 06:27:45,053] [Preprocessor.java:241] [main] Processing chromosome scaffold903 Processing chromosome scaffold903 INFO [2014-03-08 06:27:45,071] [Preprocessor.java:241] [main] Processing chromosome scaffold904 Processing chromosome scaffold904 INFO [2014-03-08 06:27:45,099] [Preprocessor.java:241] [main] Processing chromosome scaffold905 Processing chromosome scaffold905 INFO [2014-03-08 06:27:45,127] [Preprocessor.java:241] [main] Processing chromosome scaffold907 Processing chromosome scaffold907 INFO [2014-03-08 06:27:45,139] [Preprocessor.java:241] [main] Processing chromosome scaffold908 Processing chromosome scaffold908 INFO [2014-03-08 06:27:45,226] [Preprocessor.java:241] [main] Processing chromosome scaffold91 Processing chromosome scaffold91 INFO [2014-03-08 06:27:45,252] [Preprocessor.java:241] [main] Processing chromosome scaffold910 Processing chromosome scaffold910 INFO [2014-03-08 06:27:45,273] [Preprocessor.java:241] [main] Processing chromosome scaffold911 Processing chromosome scaffold911 INFO [2014-03-08 06:27:45,315] [Preprocessor.java:241] [main] Processing chromosome scaffold912 Processing chromosome scaffold912 INFO [2014-03-08 06:27:45,328] [Preprocessor.java:241] [main] Processing chromosome scaffold913 Processing chromosome scaffold913 INFO [2014-03-08 06:27:45,347] [Preprocessor.java:241] [main] Processing chromosome scaffold914 Processing chromosome scaffold914 .INFO [2014-03-08 06:27:45,500] [Preprocessor.java:241] [main] Processing chromosome scaffold915 Processing chromosome scaffold915 INFO [2014-03-08 06:27:45,523] [Preprocessor.java:241] [main] Processing chromosome scaffold916 Processing chromosome scaffold916 INFO [2014-03-08 06:27:45,570] [Preprocessor.java:241] [main] Processing chromosome scaffold917 Processing chromosome scaffold917 INFO [2014-03-08 06:27:45,621] [Preprocessor.java:241] [main] Processing chromosome scaffold919 Processing chromosome scaffold919 INFO [2014-03-08 06:27:45,640] [Preprocessor.java:241] [main] Processing chromosome scaffold922 Processing chromosome scaffold922 INFO [2014-03-08 06:27:45,672] [Preprocessor.java:241] [main] Processing chromosome scaffold923 Processing chromosome scaffold923 INFO [2014-03-08 06:27:45,708] [Preprocessor.java:241] [main] Processing chromosome scaffold924 Processing chromosome scaffold924 INFO [2014-03-08 06:27:45,724] [Preprocessor.java:241] [main] Processing chromosome scaffold925 Processing chromosome scaffold925 INFO [2014-03-08 06:27:45,766] [Preprocessor.java:241] [main] Processing chromosome scaffold926 Processing chromosome scaffold926 INFO [2014-03-08 06:27:45,783] [Preprocessor.java:241] [main] Processing chromosome scaffold928 Processing chromosome scaffold928 INFO [2014-03-08 06:27:45,810] [Preprocessor.java:241] [main] Processing chromosome scaffold929 Processing chromosome scaffold929 INFO [2014-03-08 06:27:45,866] [Preprocessor.java:241] [main] Processing chromosome scaffold93 Processing chromosome scaffold93 INFO [2014-03-08 06:27:45,902] [Preprocessor.java:241] [main] Processing chromosome scaffold930 Processing chromosome scaffold930 INFO [2014-03-08 06:27:45,981] [Preprocessor.java:241] [main] Processing chromosome scaffold931 Processing chromosome scaffold931 INFO [2014-03-08 06:27:45,999] [Preprocessor.java:241] [main] Processing chromosome scaffold932 Processing chromosome scaffold932 INFO [2014-03-08 06:27:46,068] [Preprocessor.java:241] [main] Processing chromosome scaffold933 Processing chromosome scaffold933 INFO [2014-03-08 06:27:46,184] [Preprocessor.java:241] [main] Processing chromosome scaffold934 Processing chromosome scaffold934 INFO [2014-03-08 06:27:46,253] [Preprocessor.java:241] [main] Processing chromosome scaffold935 Processing chromosome scaffold935 INFO [2014-03-08 06:27:46,270] [Preprocessor.java:241] [main] Processing chromosome scaffold936 Processing chromosome scaffold936 INFO [2014-03-08 06:27:46,274] [Preprocessor.java:241] [main] Processing chromosome scaffold937 Processing chromosome scaffold937 INFO [2014-03-08 06:27:46,280] [Preprocessor.java:241] [main] Processing chromosome scaffold938 Processing chromosome scaffold938 INFO [2014-03-08 06:27:46,294] [Preprocessor.java:241] [main] Processing chromosome scaffold939 Processing chromosome scaffold939 INFO [2014-03-08 06:27:46,338] [Preprocessor.java:241] [main] Processing chromosome scaffold94 Processing chromosome scaffold94 INFO [2014-03-08 06:27:46,405] [Preprocessor.java:241] [main] Processing chromosome scaffold940 Processing chromosome scaffold940 INFO [2014-03-08 06:27:46,425] [Preprocessor.java:241] [main] Processing chromosome scaffold941 Processing chromosome scaffold941 INFO [2014-03-08 06:27:46,447] [Preprocessor.java:241] [main] Processing chromosome scaffold942 Processing chromosome scaffold942 INFO [2014-03-08 06:27:46,593] [Preprocessor.java:241] [main] Processing chromosome scaffold943 Processing chromosome scaffold943 INFO [2014-03-08 06:27:46,612] [Preprocessor.java:241] [main] Processing chromosome scaffold944 Processing chromosome scaffold944 INFO [2014-03-08 06:27:46,629] [Preprocessor.java:241] [main] Processing chromosome scaffold946 Processing chromosome scaffold946 INFO [2014-03-08 06:27:46,640] [Preprocessor.java:241] [main] Processing chromosome scaffold947 Processing chromosome scaffold947 INFO [2014-03-08 06:27:46,656] [Preprocessor.java:241] [main] Processing chromosome scaffold948 Processing chromosome scaffold948 INFO [2014-03-08 06:27:46,755] [Preprocessor.java:241] [main] Processing chromosome scaffold949 Processing chromosome scaffold949 INFO [2014-03-08 06:27:46,769] [Preprocessor.java:241] [main] Processing chromosome scaffold950 Processing chromosome scaffold950 INFO [2014-03-08 06:27:46,876] [Preprocessor.java:241] [main] Processing chromosome scaffold951 Processing chromosome scaffold951 INFO [2014-03-08 06:27:46,977] [Preprocessor.java:241] [main] Processing chromosome scaffold952 Processing chromosome scaffold952 INFO [2014-03-08 06:27:46,993] [Preprocessor.java:241] [main] Processing chromosome scaffold953 Processing chromosome scaffold953 INFO [2014-03-08 06:27:47,006] [Preprocessor.java:241] [main] Processing chromosome scaffold954 Processing chromosome scaffold954 INFO [2014-03-08 06:27:47,076] [Preprocessor.java:241] [main] Processing chromosome scaffold955 Processing chromosome scaffold955 INFO [2014-03-08 06:27:47,188] [Preprocessor.java:241] [main] Processing chromosome scaffold958 Processing chromosome scaffold958 INFO [2014-03-08 06:27:47,217] [Preprocessor.java:241] [main] Processing chromosome scaffold959 Processing chromosome scaffold959 INFO [2014-03-08 06:27:47,262] [Preprocessor.java:241] [main] Processing chromosome scaffold96 Processing chromosome scaffold96 INFO [2014-03-08 06:27:47,289] [Preprocessor.java:241] [main] Processing chromosome scaffold960 Processing chromosome scaffold960 INFO [2014-03-08 06:27:47,320] [Preprocessor.java:241] [main] Processing chromosome scaffold961 Processing chromosome scaffold961 INFO [2014-03-08 06:27:47,322] [Preprocessor.java:241] [main] Processing chromosome scaffold962 Processing chromosome scaffold962 INFO [2014-03-08 06:27:47,479] [Preprocessor.java:241] [main] Processing chromosome scaffold963 Processing chromosome scaffold963 INFO [2014-03-08 06:27:47,535] [Preprocessor.java:241] [main] Processing chromosome scaffold964 Processing chromosome scaffold964 INFO [2014-03-08 06:27:47,576] [Preprocessor.java:241] [main] Processing chromosome scaffold966 Processing chromosome scaffold966 INFO [2014-03-08 06:27:47,584] [Preprocessor.java:241] [main] Processing chromosome scaffold967 Processing chromosome scaffold967 INFO [2014-03-08 06:27:47,630] [Preprocessor.java:241] [main] Processing chromosome scaffold968 Processing chromosome scaffold968 INFO [2014-03-08 06:27:47,685] [Preprocessor.java:241] [main] Processing chromosome scaffold969 Processing chromosome scaffold969 INFO [2014-03-08 06:27:47,746] [Preprocessor.java:241] [main] Processing chromosome scaffold97 Processing chromosome scaffold97 INFO [2014-03-08 06:27:47,773] [Preprocessor.java:241] [main] Processing chromosome scaffold970 Processing chromosome scaffold970 INFO [2014-03-08 06:27:47,785] [Preprocessor.java:241] [main] Processing chromosome scaffold971 Processing chromosome scaffold971 INFO [2014-03-08 06:27:47,817] [Preprocessor.java:241] [main] Processing chromosome scaffold973 Processing chromosome scaffold973 INFO [2014-03-08 06:27:47,992] [Preprocessor.java:241] [main] Processing chromosome scaffold974 Processing chromosome scaffold974 INFO [2014-03-08 06:27:48,014] [Preprocessor.java:241] [main] Processing chromosome scaffold975 Processing chromosome scaffold975 INFO [2014-03-08 06:27:48,103] [Preprocessor.java:241] [main] Processing chromosome scaffold976 Processing chromosome scaffold976 INFO [2014-03-08 06:27:48,146] [Preprocessor.java:241] [main] Processing chromosome scaffold977 Processing chromosome scaffold977 INFO [2014-03-08 06:27:48,241] [Preprocessor.java:241] [main] Processing chromosome scaffold979 Processing chromosome scaffold979 INFO [2014-03-08 06:27:48,253] [Preprocessor.java:241] [main] Processing chromosome scaffold98 Processing chromosome scaffold98 INFO [2014-03-08 06:27:48,327] [Preprocessor.java:241] [main] Processing chromosome scaffold980 Processing chromosome scaffold980 INFO [2014-03-08 06:27:48,508] [Preprocessor.java:241] [main] Processing chromosome scaffold982 Processing chromosome scaffold982 INFO [2014-03-08 06:27:48,520] [Preprocessor.java:241] [main] Processing chromosome scaffold983 Processing chromosome scaffold983 INFO [2014-03-08 06:27:48,615] [Preprocessor.java:241] [main] Processing chromosome scaffold984 Processing chromosome scaffold984 INFO [2014-03-08 06:27:48,627] [Preprocessor.java:241] [main] Processing chromosome scaffold985 Processing chromosome scaffold985 INFO [2014-03-08 06:27:48,691] [Preprocessor.java:241] [main] Processing chromosome scaffold986 Processing chromosome scaffold986 INFO [2014-03-08 06:27:48,726] [Preprocessor.java:241] [main] Processing chromosome scaffold987 Processing chromosome scaffold987 INFO [2014-03-08 06:27:48,830] [Preprocessor.java:241] [main] Processing chromosome scaffold988 Processing chromosome scaffold988 INFO [2014-03-08 06:27:48,838] [Preprocessor.java:241] [main] Processing chromosome scaffold99 Processing chromosome scaffold99 INFO [2014-03-08 06:27:48,942] [Preprocessor.java:241] [main] Processing chromosome scaffold990 Processing chromosome scaffold990 INFO [2014-03-08 06:27:48,954] [Preprocessor.java:241] [main] Processing chromosome scaffold991 Processing chromosome scaffold991 INFO [2014-03-08 06:27:48,967] [Preprocessor.java:241] [main] Processing chromosome scaffold992 Processing chromosome scaffold992 INFO [2014-03-08 06:27:49,061] [Preprocessor.java:241] [main] Processing chromosome scaffold993 Processing chromosome scaffold993 INFO [2014-03-08 06:27:49,154] [Preprocessor.java:241] [main] Processing chromosome scaffold994 Processing chromosome scaffold994 INFO [2014-03-08 06:27:49,171] [Preprocessor.java:241] [main] Processing chromosome scaffold995 Processing chromosome scaffold995 INFO [2014-03-08 06:27:49,177] [Preprocessor.java:241] [main] Processing chromosome scaffold997 Processing chromosome scaffold997 INFO [2014-03-08 06:27:49,186] [Preprocessor.java:241] [main] Processing chromosome scaffold998 Processing chromosome scaffold998 INFO [2014-03-08 06:27:49,232] [Preprocessor.java:241] [main] Processing chromosome scaffold999 Processing chromosome scaffold999 INFO [2014-03-08 06:27:50,178] [TDFWriter.java:304] [main] Group idx: 1 Group idx: 1 100.0% Done
E¶
In [ ]:
Run with SE worflow that includes quality read step
CLC Model¶
RNA-Seq_DH3¶
RNA-Seq DH3; pooled gill, Drayton Harbor
In [1]:
!python /Users/sr320/sqlshare-pythonclient/tools/fetchdata.py -s "set rowcount 10 SELECT * FROM [sr320@washington.edu].[RNA-Seq_DH3]" -f tsv -o /Volumes/web/cnidarian/pDOD_DH3.txt
In [12]:
!head -4 /Volumes/web/cnidarian/pDOD_DH3.txt
In [ ]: