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..
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.ipynb_checkpoints
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20150313_LSU_Oil_Spill_IndexID_Comparisons.ipynb
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20150316_LSU_OilSpill_Adapter_ID.ipynb
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20150317_LSU_OilSpill_EpinextAdaptor1_ID.ipynb
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20150408_Install_Bismark_bisulfite_mapper.ipynb
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20150414_C_gigas_Larvae_OA_Trimmomatic_FASTQC.ipynb
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20150414_C_virginica_LSU_Oil_Spill_Trimmomatic_FASTQC.ipynb
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20150429_Gigas_larvae_OA_BLASTn.ipynb
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20150501_Cgigas_larvae_OA_BLASTn_nt.ipynb
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20150506_Cgigas_larvae_OA_trimmomatic_FASTQC.ipynb
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20150521_Cgigas_larvae_OA_Trimmomatic_FASTQC.ipynb
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20160114_wasted_space_synologies.ipynb
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20160126_Olurida_BGI_data_handling.ipynb
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20160126_Pgenerosa_BGI_data_handling.ipynb
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20160203_Olurida_Zymo_Data_Handling.ipynb
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20160308_find_rename_2bRAD_undetermined_fastqs.ipynb
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20160314_Olurida_GBS_data_management.ipynb
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20160406_Oly_GBS_STACKS.ipynb
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20160406_STACKS_install.ipynb
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20160411_Concatenate_Oly_MBDseq.ipynb
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20160418_Oly_GBS_PE-Pyrad_populations.ipynb
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20160418_pyrad_oly_PE-GBS.ipynb
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20160427_Oly_GBS_data_management.ipynb
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20160427_speed_comparison.ipynb
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20160428_Oly_GBS_STACKS.ipynb
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20160502_Oly_GBS_barcode_repair.ipynb
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20160516_Oly_Small_Insert_Library_Genome_Read_Counts.ipynb
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20160523_Oly_GBS_Stacks.ipynb
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20160525_pyrad_oly_gbs_bgi.ipynb
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20160609_pyrad_oly_gbs_bgi.ipynb
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20160714_EC2_Oly_GBS_stacks_analysis.ipynb
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20160715_ec2_oly_gbs_pyrad.ipynb
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20160816_oly_gbs_fst_calcs.ipynb
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20161025_Pgenerosa_Small_Library_Genome_Read_Counts.ipynb
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20161117_docker_oly_genome_fastq_corruption.ipynb
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20161117_docker_oly_vcf_analysis.ipynb
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20161129_docker_R_magics_failure.ipynb
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20161206_docker_BGI_genome_downloads.ipynb
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20161214_docker_BGI_data_integrity_check.ipynb
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20161214_docker_notebook_trimming.ipynb
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20161229_docker_genewiz_geoduck_RRBS_data.ipynb
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20161230_docker_geoduck_RRBS_md5_checks.ipynb
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20170104_docker_oly_BGI_genome_corruption_solved.ipynb
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20170227_docker_jay_ngs_data_retrieval.ipynb
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20170301_docker_fastqc_nondemultiplexed_bgi_oly_gbs.ipynb
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20170306_docker_fastqc_demultiplexed_bgi_oly_gbs.ipynb
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20170314_docker_Oly_BGI_GBS_demultiplexing_reproducibility.ipynb
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20170320_docker_Oly_BGI_GBS_demultiplexing_reproducibility.ipynb
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20170622_oly_pacbio_data_management.ipynb
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20170907_docker_pacbio_oly_minimap2.ipynb
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20170918_docker_pacbio_oly_miniasm0.2.ipynb
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20170918_docker_pacbio_oly_racon0.5.0.ipynb
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20171003_docker_oly_assembly_comparisons.ipynb
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20171004_docker_oly_redundans.ipynb
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20171005_docker_oly_redundans.ipynb
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20171018_docker_oly_canu.ipynb
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20171023_docker_oly_pacbio_canu_comparisons.ipynb
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20171023_docker_oly_redundans.ipynb
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20171023_restore_scaphapoda_data.ipynb
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20171113_emu_pbjelly_22mer_plat.ipynb
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20171114_emu_pbjelly_BGI_scaffold.ipynb
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20171114_swoose_oly_assembly_comparisons_quast.ipynb
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20171130_emu_pbjelly.ipynb
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20180103_emu_pbjelly.ipynb
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20180116_swoose_oly_assembly_comparisons_quast.ipynb
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20180125_roadrunner_trimming_geoduck_novaseq.ipynb
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20180205_roadrunner_meraculous_geoduck_novaseq.ipynb
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20180503_emu_oly_methylation_mapping.ipynb
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20180508_roadrunner_geoduck_bowtie2_genome_mapping.ipynb
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20180514_roadrunner_geoduck_RRBS_trimming.ipynb
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20180516_roadrunner_geoduck_EPI_fastqc.ipynb
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20180516_roadrunner_geoduck_RRBS_trimming.ipynb
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20180523_roadrunner_oly_TEs_repeatmasker.ipynb
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20180529_roadrunner_virginica_TEs_repeatmasker.ipynb
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20180530_emu_oly_methylation_mapping_deduplication.ipynb
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InstallingBLAST.ipynb
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PE-GBS_empirical.ipynb
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PhageNGS.ipynb
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PhageNGS_ID.ipynb
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template_linux.ipynb
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README.md
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