# if (!requireNamespace("BiocManager", quietly = TRUE))
# install.packages("BiocManager")
# BiocManager::install("chromVAR", version = "3.8")
# BiocManager::install("motifmatchr", version = "3.8")
# BiocManager::install("BSgenome.Hsapiens.UCSC.hg19", version = "3.8")
# BiocManager::install("JASPAR2016", version = "3.8")
library(chromVAR)
library(motifmatchr)
library(Matrix)
library(SummarizedExperiment)
library(BiocParallel)
library('JASPAR2016')
library(BSgenome.Hsapiens.UCSC.hg19)
Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from ‘package:Matrix’: colMeans, colSums, rowMeans, rowSums, which The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colnames, colSums, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, lengths, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans, rownames, rowSums, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following object is masked from ‘package:Matrix’: expand The following object is masked from ‘package:base’: expand.grid Loading required package: IRanges Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: DelayedArray Loading required package: matrixStats Attaching package: ‘matrixStats’ The following objects are masked from ‘package:Biobase’: anyMissing, rowMedians Loading required package: BiocParallel Attaching package: ‘DelayedArray’ The following objects are masked from ‘package:matrixStats’: colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges The following objects are masked from ‘package:base’: aperm, apply Loading required package: BSgenome Loading required package: Biostrings Loading required package: XVector Attaching package: ‘Biostrings’ The following object is masked from ‘package:DelayedArray’: type The following object is masked from ‘package:base’: strsplit Loading required package: rtracklayer
packageVersion("chromVAR")
[1] ‘1.4.1’
register(MulticoreParam(10))
start_time <- Sys.time()
set.seed(2019)
metadata <- read.table('../../input/metadata.tsv',
header = TRUE,
stringsAsFactors=FALSE,quote="",row.names=1)
peakfile <- "../../input/GSE96769_PeakFile_20160207.bed"
peaks <- getPeaks(peakfile, sort_peaks = TRUE)
Peaks sorted
width=500
will cause the error: Error in loadFUN(x, seqname, ranges): trying to load regions beyond the boundaries of non-circular sequence "chr17"
peaks <- resize(peaks, width = 450, fix = "center")
bamfile <- list.files(path = "../../input/sc-bams_nodup/", pattern = "\\.bam$")
length(bamfile)
cellnames <- sapply(strsplit(bamfile,'.',fixed = TRUE), "[[", 1)
head(cellnames)
sum(cellnames == rownames(metadata))
fragment_counts <- getCounts(paste0("../../input/sc-bams_nodup/",bamfile),
peaks,
paired = TRUE,
by_rg = TRUE,
format = "bam",
colData = data.frame(celltype = cellnames))
Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CLP-Frozen-160106-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-CMP-Frozen-160106-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-GMP-Frozen-160107-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-HSC-Frozen-160105-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-LMPP-Frozen-160107-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MEP-Frozen-160107-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/BM1077-MPP-Frozen-160105-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160808-scATAC-BM1137-GMP2mid-LS-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160809-scATAC-BM1137-GMP1low-LS-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160818-BM1137-pDC-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160819-BM1137-CMP-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-160822-BM1137-CMP-LS-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1077-CMP-HYC-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160617-scATAC-BM1214-CMP-LS-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1137-GMP3high-HYC-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-20160726-scATAC-BM1214-CMP-LS-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-LS-160219-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-HSC-SIM-160219-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0106-UNK-160418-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CLP-frozen-151103-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-CMP-frozen-151118-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-GMP-151027-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-fresh-151027-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-HSC-frozen-151027-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-LMPP-frozen-151105-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MEP-160420-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM0828-MPP-frozen-151103-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-69.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-80.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-91.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-94.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-GMP-160421-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-1.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-16.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-17.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-26.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-27.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-3.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-32.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-4.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-40.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-41.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-42.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-49.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-65.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-71.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-77.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-87.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-92.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-93.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-BM1214-MCP-frozen-160128-96.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-12.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-19.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-36.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-45.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-60.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-67.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-7.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-73.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-88.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-9.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-MEP-141017-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-10.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-11.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-13.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-14.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-15.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-18.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-2.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-20.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-21.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-22.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-23.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-24.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-25.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-28.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-29.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-30.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-31.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-33.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-34.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-35.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-37.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-38.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-39.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-43.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-44.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-46.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-47.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-48.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-5.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-50.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-51.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-52.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-53.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-54.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-55.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-56.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-57.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-58.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-59.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-6.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-61.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-62.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-63.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-64.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-66.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-68.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-70.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-72.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-74.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-75.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-76.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-78.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-79.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-8.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-81.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-82.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-83.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-84.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-85.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-86.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-89.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-90.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-95.dedup.st.bam Reading in file: ../../input/sc-bams_nodup/singles-PB1022-mono-160128-96.dedup.st.bam
fragment_counts
class: RangedSummarizedExperiment dim: 491437 2034 metadata(0): assays(1): counts rownames: NULL rowData names(0): colnames(2034): BM1077-CLP-Frozen-160106-13 BM1077-CLP-Frozen-160106-14 ... singles-PB1022-mono-160128-95 singles-PB1022-mono-160128-96 colData names(2): celltype depth
fragment_counts <- addGCBias(fragment_counts, genome = BSgenome.Hsapiens.UCSC.hg19)
head(rowData(fragment_counts))
DataFrame with 6 rows and 1 column bias <numeric> 1 0.673333333333333 2 0.582222222222222 3 0.522222222222222 4 0.782222222222222 5 0.46 6 0.4
counts_filtered <- filterPeaks(fragment_counts, non_overlapping = TRUE)
bg <- getBackgroundPeaks(counts_filtered)
# Potentially save the bg object
saveRDS(bg, file = "background_peaks_motifs.rds")
motifs <- getJasparMotifs()
motifs
PFMatrixList of length 386 names(386): MA0025.1_NFIL3 MA0030.1_FOXF2 ... MA0909.1_HOXD13 MA0914.1_ISL2
motif_ix <- matchMotifs(motifs, counts_filtered, genome = BSgenome.Hsapiens.UCSC.hg19)
dev <- computeDeviations(object = counts_filtered, annotations = motif_ix,
background_peaks = bg)
end_time <- Sys.time()
end_time - start_time
Time difference of 28.29907 mins
df_zscores = dev@assays[[1]]
saveRDS(df_zscores, file = '../../output/feature_matrices/FM_chromVAR_buenrostro2018bulkpeaks_motifs.rds')
variability <- computeVariability(dev)
plotVariability(variability, use_plotly = FALSE)
head(variability)
dim(variability)
name | variability | bootstrap_lower_bound | bootstrap_upper_bound | p_value | p_value_adj | |
---|---|---|---|---|---|---|
MA0025.1_NFIL3 | NFIL3 | 1.440665 | 1.385741 | 1.493494 | 4.230162e-155 | 2.401239e-154 |
MA0030.1_FOXF2 | FOXF2 | 1.180256 | 1.138548 | 1.217987 | 2.142905e-29 | 6.172845e-29 |
MA0031.1_FOXD1 | FOXD1 | 1.101977 | 1.068060 | 1.136270 | 7.307642e-11 | 1.362681e-10 |
MA0051.1_IRF2 | IRF2 | 2.548169 | 2.435168 | 2.654706 | 0.000000e+00 | 0.000000e+00 |
MA0056.1_MZF1 | MZF1 | 1.166003 | 1.123621 | 1.208466 | 2.539954e-25 | 6.808487e-25 |
MA0057.1_MZF1(var.2) | MZF1(var.2) | 1.219118 | 1.177662 | 1.260462 | 4.777484e-42 | 1.661359e-41 |
dev$celltype <- metadata[colnames(dev),]
tsne_results <- deviationsTsne(dev, threshold = 1.5, perplexity = 10)
tsne_plots <- plotDeviationsTsne(dev, tsne_results,
sample_column = "celltype",
shiny = FALSE)
tsne_plots[[1]]
dim(df_zscores)
df_zscores
BM1077-CLP-Frozen-160106-13 | BM1077-CLP-Frozen-160106-14 | BM1077-CLP-Frozen-160106-2 | BM1077-CLP-Frozen-160106-21 | BM1077-CLP-Frozen-160106-27 | BM1077-CLP-Frozen-160106-3 | BM1077-CLP-Frozen-160106-36 | BM1077-CLP-Frozen-160106-42 | BM1077-CLP-Frozen-160106-44 | BM1077-CLP-Frozen-160106-50 | ⋯ | singles-PB1022-mono-160128-81 | singles-PB1022-mono-160128-82 | singles-PB1022-mono-160128-83 | singles-PB1022-mono-160128-84 | singles-PB1022-mono-160128-85 | singles-PB1022-mono-160128-86 | singles-PB1022-mono-160128-89 | singles-PB1022-mono-160128-90 | singles-PB1022-mono-160128-95 | singles-PB1022-mono-160128-96 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA0025.1_NFIL3 | -0.278286306 | 0.112060407 | -0.062820655 | -0.095424368 | -0.241401268 | -0.146683756 | -0.46696091 | -0.093062738 | 0.02790989 | -0.045261996 | ⋯ | 0.13481378 | 0.145741386 | 0.242564130 | 0.168850335 | 1.563188e-01 | 0.153548082 | -0.01677525 | 0.1003697868 | 0.128253618 | 0.21343678 |
MA0030.1_FOXF2 | 0.176107788 | -0.041292032 | 0.083806952 | 0.071055290 | -0.026868251 | -0.016681841 | 0.25217463 | 0.322402750 | 0.07806533 | -0.136876382 | ⋯ | -0.06775071 | -0.043569814 | -0.036818578 | 0.077240782 | -7.383318e-02 | -0.038127675 | -0.28104413 | -0.0354117096 | 0.097489307 | 0.02635869 |
MA0031.1_FOXD1 | 0.137372699 | 0.320349282 | -0.044740691 | 0.265338659 | 0.120922454 | 0.087623809 | 0.15717723 | 0.058841446 | 0.02189066 | -0.018605675 | ⋯ | 0.01972595 | 0.066022231 | 0.130188834 | -0.152699447 | 2.360461e-02 | 0.087566273 | -0.19234792 | 0.0799305100 | -0.043302657 | 0.08417807 |
MA0051.1_IRF2 | 0.186088512 | 0.087081618 | -0.093170188 | -0.016353638 | 0.080477333 | -0.068178466 | -0.09325282 | 0.035428898 | -0.04332944 | 0.031101308 | ⋯ | -0.04765824 | -0.035892845 | 0.049456672 | -0.018141407 | 1.653424e-01 | 0.103547945 | 0.02895408 | 0.0605930663 | 0.019730997 | 0.15465001 |
MA0056.1_MZF1 | 0.043169020 | 0.005143543 | 0.020813319 | 0.067516503 | 0.066275258 | 0.048243312 | -0.04758388 | 0.024988734 | 0.07235243 | 0.005218608 | ⋯ | 0.01948856 | 0.012385242 | 0.002283871 | 0.046608515 | -1.946971e-02 | 0.018550620 | 0.05927516 | -0.0099887530 | 0.018046868 | 0.02474473 |
MA0057.1_MZF1(var.2) | -0.012046558 | -0.006548824 | -0.038311677 | 0.071768380 | 0.073498366 | 0.206747382 | -0.06369253 | -0.007861454 | 0.05305304 | -0.023704580 | ⋯ | 0.03581185 | -0.027117960 | 0.019596763 | -0.015524691 | 9.426235e-03 | 0.009220927 | 0.01582054 | 0.0356467673 | -0.064516525 | 0.03311147 |
MA0059.1_MAX::MYC | -0.015787019 | 0.279716115 | -0.150114857 | 0.101505864 | -0.038989330 | -0.094811918 | 0.40090114 | -0.018070061 | -0.14777544 | 0.046349850 | ⋯ | -0.01847779 | 0.037663298 | -0.012841728 | -0.011199335 | -2.066885e-02 | 0.025627562 | 0.15034220 | 0.0045406819 | 0.066166860 | 0.03340522 |
MA0066.1_PPARG | -0.187958929 | 0.121913976 | 0.012575795 | -0.142084446 | -0.065372733 | -0.031127239 | -0.21616530 | 0.126454286 | -0.08706308 | 0.108288161 | ⋯ | 0.03095655 | -0.089809777 | 0.003586521 | -0.049970714 | 3.204046e-02 | 0.053691540 | -0.09360979 | -0.0001362711 | 0.048281223 | 0.03802346 |
MA0069.1_Pax6 | 0.596173015 | 0.230655335 | 0.370569217 | 0.453930383 | -0.141180307 | 0.131632401 | 0.13235302 | 0.050229787 | 0.19545248 | 0.013564385 | ⋯ | 0.04373420 | 0.072504939 | 0.070016785 | 0.131576982 | -9.746760e-02 | -0.068999174 | -0.07635095 | -0.1544655950 | 0.162426458 | 0.11849640 |
MA0070.1_PBX1 | 0.202754212 | 0.219980998 | -0.031583472 | 0.165123362 | -0.046128855 | 0.259367846 | 0.17498791 | -0.119071719 | 0.09171916 | 0.006070545 | ⋯ | -0.19005973 | -0.132853464 | -0.026653248 | -0.308763783 | -3.523839e-02 | -0.081182414 | -0.34846124 | -0.1676740202 | -0.150369897 | -0.11543671 |
MA0071.1_RORA | -0.266119533 | -0.047623220 | -0.148584335 | -0.174454280 | 0.073634625 | -0.033949740 | -0.06371840 | 0.151473060 | -0.06288927 | 0.085228361 | ⋯ | 0.17777477 | 0.013823022 | 0.032071758 | 0.001364582 | 1.368786e-01 | 0.070271408 | 0.37209942 | 0.1294124568 | 0.079454447 | -0.14938865 |
MA0072.1_RORA(var.2) | -0.136783694 | 0.206965274 | -0.004195812 | 0.100551572 | 0.083786110 | -0.050955098 | 0.05238094 | 0.018403549 | -0.05504961 | -0.170265700 | ⋯ | 0.19348422 | -0.025047325 | -0.006816712 | 0.234636534 | 5.305329e-02 | 0.022524760 | 0.39992460 | 0.0049094884 | 0.010510019 | -0.01564047 |
MA0073.1_RREB1 | -0.007604542 | 0.040177011 | 0.014440694 | 0.021455646 | 0.121776998 | -0.011152097 | -0.02650740 | -0.058821568 | 0.03247069 | -0.001253444 | ⋯ | -0.08304069 | -0.018932988 | -0.083548654 | -0.088336074 | -3.136272e-02 | -0.038228954 | -0.07789600 | -0.0457038867 | -0.046970581 | -0.07100112 |
MA0074.1_RXRA::VDR | 0.220302974 | 0.142302171 | -0.039667024 | -0.295103503 | 0.094603465 | 0.188969687 | -0.05167839 | 0.068567549 | 0.14098733 | -0.076874758 | ⋯ | 0.23314852 | 0.136126491 | 0.060952190 | -0.036067086 | -1.139785e-02 | 0.051561336 | 0.16646612 | 0.1172426665 | -0.030598785 | 0.13159648 |
MA0077.1_SOX9 | -0.118514672 | -0.121884910 | -0.193360410 | -0.097618038 | -0.131818121 | -0.016615617 | 0.37344544 | 0.142628214 | 0.02381523 | -0.198335318 | ⋯ | -0.03767817 | -0.091687624 | 0.036839891 | -0.098733305 | 3.322150e-02 | 0.036920918 | -0.04117830 | 0.0892446598 | -0.024967589 | 0.04638439 |
MA0081.1_SPIB | 0.042329346 | -0.060184450 | 0.001143387 | 0.028479942 | 0.078403319 | 0.048835694 | 0.12271353 | -0.023190267 | 0.06264291 | -0.016980326 | ⋯ | 0.11238223 | 0.111059925 | 0.120802182 | 0.115758194 | 9.815750e-02 | 0.149837277 | 0.25288784 | 0.0816969402 | 0.054179010 | 0.09655980 |
MA0084.1_SRY | -0.079395161 | -0.078939955 | -0.199792409 | 0.078470279 | 0.086794981 | 0.009358462 | 0.02968484 | -0.098390154 | -0.03192836 | -0.166952986 | ⋯ | -0.13079862 | 0.055714174 | 0.008083941 | -0.091123898 | 4.734624e-02 | -0.060433096 | -0.11885097 | 0.0500990088 | 0.126885127 | -0.17105376 |
MA0091.1_TAL1::TCF3 | 0.208489498 | 0.137297335 | 0.171174398 | 0.210347513 | -0.008088996 | 0.050237538 | 0.13578840 | 0.082646684 | 0.47538998 | 0.465800355 | ⋯ | -0.14601107 | -0.189915150 | -0.250985855 | -0.088928000 | -1.740693e-01 | -0.173615759 | -0.31764023 | -0.1889441892 | -0.072286127 | -0.14261791 |
MA0101.1_REL | 0.161356263 | 0.117430960 | 0.181243180 | 0.059727312 | -0.075915931 | 0.327814577 | 0.19549948 | -0.007679846 | 0.05380546 | -0.034160523 | ⋯ | 0.10938595 | 0.027136830 | 0.135703176 | 0.207937948 | 7.758215e-02 | 0.035182539 | -0.01358166 | 0.1738854922 | 0.199881111 | 0.11578084 |
MA0107.1_RELA | 0.181455552 | 0.137588969 | 0.173834197 | 0.038551329 | -0.030032634 | 0.331739457 | 0.17023242 | 0.203539525 | 0.12956061 | -0.001339762 | ⋯ | 0.05992531 | 0.043265773 | 0.148288436 | 0.219681585 | 1.973664e-02 | 0.052150629 | -0.06203584 | 0.1437677410 | 0.120571957 | 0.14680822 |
MA0115.1_NR1H2::RXRA | -0.293437760 | 0.130816388 | -0.052926579 | 0.070867192 | 0.095861029 | 0.065616000 | -0.16131334 | 0.036588170 | -0.11753108 | 0.118956228 | ⋯ | 0.02022375 | -0.026663729 | 0.126443191 | 0.232336631 | 9.562221e-02 | 0.101288777 | 0.32397082 | 0.0703086918 | 0.150743932 | 0.06993282 |
MA0119.1_NFIC::TLX1 | -0.052900581 | 0.050291624 | -0.092244795 | -0.122940118 | 0.018777270 | 0.030734011 | 0.03122871 | 0.101796064 | 0.13620788 | 0.050274810 | ⋯ | -0.05382939 | -0.107461323 | -0.032576949 | -0.054099073 | -6.042293e-02 | -0.046060535 | -0.02838627 | -0.0809439643 | -0.020171724 | 0.04177152 |
MA0130.1_ZNF354C | 0.005188305 | -0.017669018 | -0.152085230 | -0.134019403 | -0.064198980 | -0.081284401 | -0.17298704 | 0.035350861 | -0.03711607 | -0.096713937 | ⋯ | -0.05935571 | 0.041887717 | -0.002657542 | 0.039154796 | 3.151837e-02 | -0.020107028 | -0.08711687 | -0.0061819309 | -0.098337973 | 0.05414328 |
MA0139.1_CTCF | -0.084676850 | -0.051178499 | -0.036005922 | -0.086794702 | -0.015371909 | -0.131243790 | 0.07822379 | -0.136774187 | -0.02721801 | -0.006423746 | ⋯ | -0.13001316 | 0.003001482 | 0.011837176 | -0.186159223 | -4.050256e-02 | -0.037795075 | -0.04942765 | -0.0210662435 | 0.007047290 | -0.03570913 |
MA0149.1_EWSR1-FLI1 | 0.018444109 | 0.056793033 | 0.017475421 | -0.020219307 | 0.064690135 | 0.063591767 | 0.08797232 | 0.042605240 | 0.02478830 | 0.012136720 | ⋯ | 0.01934475 | 0.022608652 | 0.028311361 | 0.023741123 | 9.850244e-03 | 0.037097598 | 0.09179507 | 0.0352917531 | 0.034020206 | 0.00638227 |
MA0138.2_REST | -0.053412908 | -0.003550585 | -0.049598826 | 0.059618092 | 0.100008425 | -0.035291966 | 0.11806179 | 0.118902199 | 0.04048403 | 0.056758893 | ⋯ | -0.03646770 | 0.010847133 | -0.055489337 | -0.018159366 | -7.524059e-02 | -0.051693139 | 0.02739262 | -0.0236165246 | 0.005004647 | -0.10107793 |
MA0152.1_NFATC2 | -0.050171176 | -0.047669588 | 0.025196716 | -0.101906084 | -0.039622005 | 0.016395631 | 0.02904126 | -0.126005048 | -0.08257423 | -0.116799230 | ⋯ | -0.10483280 | -0.022973182 | -0.027936512 | 0.017534863 | -1.449250e-02 | -0.015293550 | -0.05483907 | -0.0135917780 | -0.061295643 | -0.01045936 |
MA0155.1_INSM1 | -0.004789045 | 0.015465293 | 0.008406725 | 0.003069333 | 0.076613471 | 0.032704693 | -0.14566923 | 0.086653734 | 0.06305523 | 0.030875857 | ⋯ | -0.02481051 | -0.003204395 | -0.056427787 | -0.122835750 | -2.789429e-02 | -0.038054714 | 0.05954874 | -0.0152485958 | 0.028442210 | -0.07864131 |
MA0158.1_HOXA5 | -0.134249196 | -0.163402723 | 0.095348713 | 0.039772960 | -0.028645682 | 0.061609192 | -0.32642418 | -0.311396777 | -0.14929465 | -0.148663329 | ⋯ | 0.05767512 | -0.092134545 | 0.063693809 | 0.148613670 | -9.621540e-02 | 0.042954827 | -0.24200716 | 0.0107650676 | 0.096706404 | 0.13071068 |
MA0159.1_RARA::RXRA | -0.031260293 | -0.129116928 | -0.117513281 | -0.098695468 | 0.072652296 | 0.012590067 | 0.03566136 | -0.161875255 | -0.04918649 | 0.102777639 | ⋯ | 0.17329211 | 0.005022977 | 0.024019975 | -0.108585558 | 5.863554e-05 | 0.020895094 | 0.17974046 | 0.0591855849 | -0.007587204 | 0.00937093 |
⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋱ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ | ⋮ |
MA0871.1_TFEC | -0.14634132 | 0.066570106 | 0.12001946 | 0.19575259 | -0.226321740 | 0.15442572 | 0.11629729 | -0.066802374 | 0.035317508 | 0.220076449 | ⋯ | -0.016321029 | 0.025111198 | 0.09480519 | 0.170341794 | 1.626320e-01 | 0.178122385 | 0.203757841 | 0.088990410 | 0.07601572 | 0.172638622 |
MA0872.1_TFAP2A(var.3) | 0.05774085 | 0.058544027 | 0.16550958 | 0.07759289 | 0.075149048 | 0.04314611 | 0.02047263 | 0.070878086 | -0.006015515 | 0.030459330 | ⋯ | 0.054579330 | 0.004217702 | -0.01487784 | 0.142437200 | -2.679264e-02 | -0.044256494 | -0.027247165 | -0.023691035 | 0.02192153 | -0.027958927 |
MA0028.2_ELK1 | -0.15906232 | -0.062767553 | 0.15833186 | -0.07365416 | 0.065308974 | -0.05111763 | -0.07496890 | -0.089762120 | -0.005730514 | 0.038030854 | ⋯ | 0.032060183 | 0.071195234 | 0.01249072 | 0.024116053 | 1.064639e-01 | 0.068349490 | 0.024416750 | 0.045532742 | 0.13277979 | 0.111847763 |
MA0873.1_HOXD12 | -0.12775553 | 0.008923930 | 0.35843532 | 0.13620705 | -0.101392536 | -0.12342080 | 0.25066395 | -0.229891992 | 0.246646383 | 0.008036917 | ⋯ | 0.061260139 | 0.014240695 | -0.02150113 | 0.051394784 | -7.473627e-02 | -0.079886650 | 0.286152440 | -0.221184463 | -0.24178625 | 0.189398283 |
MA0875.1_BARX1 | 0.14793902 | 0.709716010 | -0.47769764 | -0.66274733 | -0.124133183 | 0.14377506 | -0.25641188 | 0.193131229 | -0.097622888 | 0.136350427 | ⋯ | -0.007924248 | 0.104463375 | 0.17533939 | -0.095297295 | -4.780962e-06 | 0.047199080 | -0.069593920 | 0.015014061 | 0.04666739 | -0.252774185 |
MA0876.1_BSX | 0.21465467 | -0.111410762 | 0.03846318 | 0.34664801 | -0.117627840 | 0.02093102 | 0.06180829 | -0.206250174 | 0.014056855 | -0.128288804 | ⋯ | 0.043319461 | -0.113226000 | 0.12343328 | 0.047916446 | 5.287371e-02 | 0.077211191 | -0.030837194 | -0.021315180 | 0.03776577 | 0.179663602 |
MA0878.1_CDX1 | -0.12072243 | -0.014053254 | -0.07861139 | 0.14525289 | -0.031064134 | -0.02879686 | -0.01119621 | -0.079742678 | -0.069832010 | -0.032237257 | ⋯ | -0.035483965 | -0.035327068 | -0.18870704 | -0.026005761 | -6.307832e-02 | -0.119610592 | -0.084402100 | -0.059148939 | -0.22935981 | 0.046997707 |
MA0882.1_DLX6 | -0.24248625 | -0.169546726 | -0.05870034 | -0.28879116 | -0.394008544 | -0.10911349 | 0.42351944 | -0.202972320 | -0.057441306 | -0.420965973 | ⋯ | -0.128890327 | 0.079550798 | 0.05306252 | 0.028733518 | -1.251831e-02 | -0.011272027 | 0.188056903 | -0.041320742 | -0.04961374 | -0.143202595 |
MA0884.1_DUXA | -0.09672099 | -0.113691013 | -0.31699465 | -0.05530839 | 0.102764665 | 0.04121388 | -0.28069038 | -0.193226492 | 0.039564810 | -0.105209556 | ⋯ | -0.059950004 | 0.016655417 | 0.13678554 | -0.167209078 | 1.557974e-01 | 0.116524423 | 0.142077847 | 0.038267190 | 0.02782098 | 0.312905334 |
MA0886.1_EMX2 | 0.01574425 | -0.212812007 | -0.65410902 | -0.02201622 | -0.301845911 | -0.02866295 | -0.31376443 | 0.279560435 | -0.188304295 | -0.145177028 | ⋯ | -0.113540294 | 0.002054146 | 0.13022404 | 0.337070516 | -5.974743e-02 | -0.089453600 | -0.076449419 | -0.062498697 | -0.03986776 | -0.008800940 |
MA0887.1_EVX1 | -0.20086354 | -0.384424822 | -0.33927688 | -0.16069463 | -0.312114811 | -0.08450889 | -0.10576369 | -0.086231596 | -0.268307676 | -0.262400520 | ⋯ | -0.036013524 | 0.043848976 | 0.11044349 | -0.016126274 | -7.293367e-02 | -0.093493360 | -0.264712384 | -0.065748170 | 0.04210924 | -0.015333505 |
MA0888.1_EVX2 | -0.02753772 | -0.203167081 | 0.19766941 | -0.06102155 | 0.007846498 | -0.15919536 | 0.18660672 | -0.098523748 | -0.250388997 | -0.361869920 | ⋯ | -0.124650160 | 0.061869559 | 0.07403763 | 0.170256435 | -6.031878e-02 | -0.124691393 | -0.129809617 | -0.109097668 | 0.04257975 | -0.127261186 |
MA0889.1_GBX1 | 0.18094484 | -0.222844039 | -0.16479918 | 0.02408114 | -0.163651689 | 0.20860643 | -0.17456901 | -0.018811529 | -0.025377272 | -0.145076367 | ⋯ | 0.186476580 | 0.098686322 | 0.21036080 | 0.062226493 | -3.086634e-02 | 0.033364485 | -0.127375705 | 0.013264035 | 0.11335225 | 0.131462642 |
MA0890.1_GBX2 | 0.23870647 | -0.012274636 | -0.27307433 | -0.27465336 | -0.343136027 | 0.13794594 | -0.07133402 | -0.209020746 | 0.052866561 | 0.246035573 | ⋯ | -0.004733438 | -0.005108518 | 0.15891958 | -0.043122026 | -3.344937e-02 | 0.053139315 | -0.090281113 | 0.028775147 | 0.12896070 | -0.002879009 |
MA0891.1_GSC2 | -0.04862127 | -0.076492803 | -0.24291285 | 0.07660482 | -0.066545023 | -0.08177689 | -0.08312721 | -0.111216307 | 0.014770843 | 0.219691317 | ⋯ | -0.161886188 | -0.170632733 | -0.07016214 | -0.214354095 | 1.739894e-02 | -0.035529368 | -0.008983777 | 0.006479997 | 0.30648530 | 0.111480399 |
MA0892.1_GSX1 | 0.06927218 | -0.030279312 | -0.24971487 | 0.17163171 | -0.099720110 | 0.12763478 | -0.23722973 | 0.082225525 | 0.070733897 | 0.218664380 | ⋯ | 0.050837142 | -0.001945899 | 0.05355951 | -0.050344854 | -3.782962e-02 | 0.066565034 | -0.154420988 | 0.033589418 | -0.25545208 | -0.071226383 |
MA0893.1_GSX2 | 0.14712425 | 0.053942718 | -0.19394819 | 0.10937240 | -0.067397956 | 0.14269538 | -0.08522696 | 0.012955859 | 0.029604482 | 0.161798994 | ⋯ | -0.102633445 | -0.017679078 | 0.16953593 | 0.080179568 | -4.975284e-02 | 0.006083594 | -0.013246876 | -0.024221534 | -0.11985482 | -0.050812766 |
MA0894.1_HESX1 | 0.40558421 | -0.145747512 | -0.11599052 | 0.10493879 | -0.229084527 | -0.06317528 | 0.47541916 | -0.186641165 | -0.041126085 | 0.094140459 | ⋯ | 0.045703687 | 0.078725864 | 0.08088502 | 0.022996390 | 4.026856e-03 | 0.047115292 | -0.096270633 | -0.049171920 | 0.38606935 | 0.084930973 |
MA0895.1_HMBOX1 | -0.22315932 | -0.029457783 | -0.23033995 | 0.12921377 | -0.346245096 | 0.05550736 | 0.11841829 | 0.217337492 | -0.044215205 | 0.091343663 | ⋯ | 0.093031584 | -0.031663140 | -0.12259399 | -0.172540260 | 1.020798e-02 | 0.091788159 | 0.004989367 | 0.020798047 | -0.10184126 | 0.004429796 |
MA0899.1_HOXA10 | -0.10818177 | 0.082986863 | -0.08699698 | 0.17056769 | -0.197312622 | 0.05099599 | -0.02551159 | -0.011123000 | 0.004805885 | -0.016221400 | ⋯ | -0.008333057 | -0.040560401 | -0.08388539 | -0.111314662 | -4.249689e-02 | -0.047333761 | 0.019586340 | -0.021337717 | -0.19834757 | 0.098937271 |
MA0900.1_HOXA2 | -0.07604372 | -0.214381077 | -0.08278743 | 0.06589026 | -0.206770064 | -0.25978268 | -0.05883062 | 0.397132511 | -0.193871329 | -0.244070554 | ⋯ | -0.118886610 | 0.053500945 | 0.19584846 | -0.017725461 | -5.107058e-02 | -0.114169090 | -0.033089155 | -0.014936717 | 0.11787636 | -0.056507366 |
MA0901.1_HOXB13 | 0.13465700 | 0.074757165 | -0.03963025 | 0.11267993 | 0.003976515 | -0.02594910 | -0.19880308 | -0.025615610 | -0.216429711 | -0.064972506 | ⋯ | -0.095080224 | 0.001604744 | -0.02106152 | -0.035023210 | 1.568107e-02 | -0.025621563 | 0.180161201 | -0.060765002 | -0.06879943 | 0.102528596 |
MA0902.1_HOXB2 | 0.22237394 | -0.249538367 | -0.20305096 | -0.13952229 | -0.250911596 | -0.05764741 | -0.05833719 | 0.059544410 | -0.029569012 | -0.134089990 | ⋯ | -0.111706863 | 0.042019371 | 0.07367793 | 0.125409784 | -4.836746e-02 | -0.026967896 | -0.278648211 | -0.067825862 | 0.05089708 | -0.151738484 |
MA0903.1_HOXB3 | 0.28530234 | -0.422523578 | -0.16921277 | -0.08362707 | -0.185106775 | 0.18892226 | 0.29924900 | 0.011571377 | 0.058458496 | 0.044011330 | ⋯ | -0.073189302 | -0.026890501 | 0.05791327 | 0.093189438 | 1.555975e-02 | 0.024565860 | -0.181278486 | -0.048360870 | 0.01048187 | -0.104324723 |
MA0905.1_HOXC10 | -0.12434161 | 0.126384743 | 0.13051511 | -0.09391866 | 0.021687461 | 0.06316643 | -0.04998308 | -0.122111106 | 0.157738891 | -0.220809695 | ⋯ | 0.078928344 | -0.098363605 | -0.10356298 | 0.007708063 | -8.447346e-02 | -0.091825060 | 0.240265212 | -0.159000346 | -0.14469834 | -0.071259112 |
MA0906.1_HOXC12 | -0.21370628 | 0.011682790 | 0.64663600 | 0.27024233 | -0.030073210 | -0.13817354 | 0.30665893 | -0.158221935 | -0.105520489 | 0.011246729 | ⋯ | 0.153530001 | -0.012364093 | 0.06858168 | 0.133583848 | 3.243726e-02 | -0.032438496 | -0.008387730 | -0.003906886 | -0.27523346 | 0.139909410 |
MA0907.1_HOXC13 | -0.29099810 | 0.145301035 | 0.12628186 | -0.01990421 | -0.263548792 | -0.12423641 | -0.01701355 | -0.210204628 | -0.014260815 | -0.068821878 | ⋯ | -0.393609004 | 0.058372060 | -0.01644511 | -0.009450912 | -6.110267e-02 | -0.077361660 | 0.236760406 | -0.016906352 | -0.14936973 | 0.058169324 |
MA0908.1_HOXD11 | -0.10011570 | 0.077979312 | 0.21932721 | 0.08111124 | -0.085794015 | -0.02223892 | 0.27398673 | -0.086986790 | 0.109507097 | -0.127090591 | ⋯ | 0.169820201 | -0.007717135 | -0.02512356 | 0.107187362 | -2.045897e-02 | -0.072442160 | 0.198908553 | -0.141408078 | -0.09387106 | 0.019470691 |
MA0909.1_HOXD13 | 0.16255879 | 0.003293621 | -0.11790846 | -0.01783751 | -0.051481491 | -0.12011617 | -0.22191084 | 0.007987309 | -0.173065257 | -0.009109211 | ⋯ | -0.039866900 | -0.003364388 | -0.01562135 | -0.024379797 | 2.638071e-02 | 0.033390464 | 0.123331687 | -0.022609340 | -0.16636040 | 0.086615687 |
MA0914.1_ISL2 | -0.01366004 | -0.228779437 | 0.03874400 | 0.30708817 | -0.175245148 | -0.03583749 | 0.13178858 | -0.327207404 | 0.003580948 | 0.003301255 | ⋯ | 0.123926066 | 0.033454774 | -0.02498390 | 0.109909832 | 5.962488e-02 | -0.068120285 | -0.072155511 | -0.047982981 | 0.04733289 | -0.029793195 |
sessionInfo()
R version 3.5.1 (2018-07-02) Platform: x86_64-conda_cos6-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default BLAS/LAPACK: /data/pinello/SHARED_SOFTWARE/anaconda3/envs/ATACseq_chromVAR/lib/R/lib/libRblas.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets [8] methods base other attached packages: [1] BSgenome.Hsapiens.UCSC.hg19_1.4.0 BSgenome_1.50.0 [3] rtracklayer_1.42.2 Biostrings_2.50.2 [5] XVector_0.22.0 JASPAR2016_1.10.0 [7] SummarizedExperiment_1.12.0 DelayedArray_0.8.0 [9] BiocParallel_1.16.6 matrixStats_0.54.0 [11] Biobase_2.42.0 GenomicRanges_1.34.0 [13] GenomeInfoDb_1.18.2 IRanges_2.16.0 [15] S4Vectors_0.20.1 BiocGenerics_0.28.0 [17] Matrix_1.2-17 motifmatchr_1.4.0 [19] chromVAR_1.4.1 loaded via a namespace (and not attached): [1] bitops_1.0-6 DirichletMultinomial_1.24.1 [3] TFBSTools_1.20.0 bit64_0.9-7 [5] httr_1.4.0 repr_0.19.2 [7] tools_3.5.1 R6_2.4.0 [9] DT_0.5 seqLogo_1.48.0 [11] DBI_1.0.0 lazyeval_0.2.2 [13] colorspace_1.4-1 tidyselect_0.2.5 [15] bit_1.1-14 compiler_3.5.1 [17] plotly_4.8.0 labeling_0.3 [19] caTools_1.17.1.2 scales_1.0.0 [21] readr_1.3.1 nabor_0.5.0 [23] pbdZMQ_0.3-3 stringr_1.4.0 [25] digest_0.6.18 Rsamtools_1.34.1 [27] R.utils_2.8.0 base64enc_0.1-3 [29] pkgconfig_2.0.2 htmltools_0.3.6 [31] htmlwidgets_1.3 rlang_0.3.3 [33] RSQLite_2.1.1 VGAM_1.1-1 [35] shiny_1.2.0 jsonlite_1.6 [37] gtools_3.8.1 dplyr_0.8.0.1 [39] R.oo_1.22.0 RCurl_1.95-4.12 [41] magrittr_1.5 GO.db_3.7.0 [43] GenomeInfoDbData_1.2.0 Rcpp_1.0.1 [45] IRkernel_0.8.15 munsell_0.5.0 [47] R.methodsS3_1.7.1 stringi_1.4.3 [49] zlibbioc_1.28.0 Rtsne_0.15 [51] plyr_1.8.4 grid_3.5.1 [53] blob_1.1.1 promises_1.0.1 [55] crayon_1.3.4 miniUI_0.1.1.1 [57] CNEr_1.18.1 lattice_0.20-38 [59] IRdisplay_0.7.0 splines_3.5.1 [61] annotate_1.60.1 hms_0.4.2 [63] KEGGREST_1.22.0 pillar_1.3.1 [65] uuid_0.1-2 codetools_0.2-16 [67] reshape2_1.4.3 TFMPvalue_0.0.8 [69] XML_3.98-1.19 glue_1.3.1 [71] evaluate_0.13 data.table_1.12.0 [73] png_0.1-7 httpuv_1.4.5.1 [75] tidyr_0.8.3 gtable_0.3.0 [77] poweRlaw_0.70.2 purrr_0.3.2 [79] assertthat_0.2.1 ggplot2_3.1.0 [81] mime_0.6 xtable_1.8-3 [83] later_0.8.0 viridisLite_0.3.0 [85] tibble_2.1.1 GenomicAlignments_1.18.1 [87] AnnotationDbi_1.44.0 memoise_1.1.0
save.image(file = 'chromVAR_buenrostro2018bulkpeaks_motifs.RData')