Embedded Figure 4 from "Deblur rapidly resolves single-nucleotide community sequence patterns" showing the result of applying Deblur to a subset of American Gut Project data.

In [1]:
import pandas as pd
import skbio
from emperor import Emperor, nbinstall
nbinstall()
In [2]:
md = pd.read_csv('embedded_figure_4_mapping_file.txt', sep='\t', dtype=object).set_index('#SampleID')
pc = skbio.OrdinationResults.read('embedded_figure_4_ordination.txt')
Emperor(pc, md, remote=True)
Emperor resources missing. Expected them to be found in https://cdn.rawgit.com/biocore/emperor/new-api/emperor/support_files