import util
import os
from IPython.core.display import Markdown
benchmark = 'microsphere'
Markdown(open(os.path.join(benchmark, 'README.md'), 'r').read())
The microrsphere benchmark runs a system of star polymers in an explicit solvent using DPD. These organize into a microspherical droplet. This model is used in the research article: Zhang et. al. Simultaneous Nano- and Microscale Control of Nanofibrous Microspheres Self-Assembled from Star-Shaped Polymers. Advanced Materials, pages 3947–3952 , 2015.
Parameters:
bmark.py
for full force field specification.Performance results are reported in hours to complete ten million time steps.
rows = util.read_rows(benchmark)
table = util.make_table(rows)
Markdown(table)
Date | System | Compiler | CUDA | HOOMD | Precision | N | CPU | GPU | Ranks | Time for 10e6 steps (hours) |
---|---|---|---|---|---|---|---|---|---|---|
2018/01/15 | comet | gcc 4.9.2 | 8.0 | 2.2.2 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz | Tesla P100-PCIE-16GB | 4 | 14.91 |
2018/01/15 | comet | gcc 4.9.2 | 8.0 | 2.2.2 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz | Tesla P100-PCIE-16GB | 16 | 24.17 |
2018/01/15 | comet | gcc 4.9.2 | 8.0 | 2.2.2 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz | Tesla P100-PCIE-16GB | 1 | 26.15 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 16 | 7.35 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 64 | 7.65 |
2016/10/24 | titan | gcc 4.9.3 | 7.5 | 2.1.1 | double | 1,428,364 | 6-Core AMD Opteron(tm) Processor 23 (D0) | Tesla K20X | 16 | 15.80 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 4 | 15.89 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 16 | 17.52 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 1 | 25.79 |
2016/10/24 | titan | gcc 4.9.3 | 7.5 | 2.1.1 | double | 1,428,364 | 6-Core AMD Opteron(tm) Processor 23 (D0) | Tesla K20X | 4 | 37.61 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K40m | 4 | 38.06 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 4 | 43.68 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 1 | 81.98 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K40m | 1 | 100.15 |
2016/10/24 | titan | gcc 4.9.3 | 7.5 | 2.1.1 | double | 1,428,364 | 6-Core AMD Opteron(tm) Processor 23 (D0) | Tesla K20X | 1 | 101.71 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla M40 24GB | 1 | 143.05 |
2016/10/12 | psg | gcc 4.8.5 | 8.0 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 4 | 16.22 |
2016/10/12 | psg | gcc 4.8.5 | 8.0 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 8 | 22.50 |
2016/10/12 | psg | gcc 4.8.5 | 8.0 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 1 | 25.74 |
2016/10/13 | psg | gcc 4.8.5 | 7.5 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K40m | 4 | 38.11 |
2016/10/13 | psg | gcc 4.8.5 | 7.5 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla M40 24GB | 4 | 39.15 |
2016/10/12 | psg | gcc 4.8.5 | 8.0 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 1 | 82.40 |
2016/10/13 | psg | gcc 4.8.5 | 7.5 | 2.1.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla M40 24GB | 1 | 146.81 |
2016/09/13 | flux | gcc 4.9.3 | 7.5 | 2.0.3 | double | 1,428,364 | 6-Core AMD Opteron(tm) Processor 23 (D0) | Tesla K20X | 64 | 8.67 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 77.84 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | TITAN X | 1 | 83.06 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 155.31 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 37.94 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 59.75 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 88.60 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 166.13 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 202.82 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 356.29 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 37.42 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 59.90 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 204.49 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 25.20 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 41.72 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | GeForce GTX 680 | 1 | 77.66 |
2015/12/15 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 1,428,364 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 131.49 |
from IPython.display import HTML
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