import util
import os
from IPython.core.display import Markdown
benchmark = 'lj-liquid'
Markdown(open(os.path.join(benchmark, 'README.md'), 'r').read())
The Lennard-Jones liquid benchmark is a classic benchmark for general-purpose MD simulations. It is representative of the performance HOOMD-blue achieves with straight pair potential simulations.
Parameters:
Performance results are reported in hours to complete ten million time steps.
rows = util.read_rows(benchmark)
table = util.make_table(rows)
Markdown(table)
Date | System | Compiler | CUDA | HOOMD | Precision | N | CPU | GPU | Ranks | Time for 10e6 steps (hours) |
---|---|---|---|---|---|---|---|---|---|---|
2018/01/15 | comet | gcc 4.9.2 | 8.0 | 2.2.2 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz | Tesla P100-PCIE-16GB | 1 | 1.25 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 1 | 1.22 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 1 | 3.81 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K40m | 1 | 4.00 |
2016/10/23 | psg | gcc 4.8.5 | 8.0 | 2.1.1 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla M40 24GB | 1 | 9.38 |
2016/10/12 | psg | gcc 4.8.5 | 8.0 | 2.1.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla P100-PCIE-16GB | 1 | 1.23 |
2016/10/12 | psg | gcc 4.8.5 | 8.0 | 2.1.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K80 | 1 | 3.85 |
2016/10/13 | psg | gcc 4.8.5 | 7.5 | 2.1.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla K40m | 1 | 4.00 |
2016/10/13 | psg | gcc 4.8.5 | 7.5 | 2.1.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz | Tesla M40 24GB | 1 | 9.39 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 3.40 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | TITAN X | 1 | 5.18 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 10.37 |
2016/09/13 | collins | gcc 4.8.5 | 7.5 | 2.0.3 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | GeForce GTX 680 | 1 | 15.06 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 1.60 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 2.70 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 3.55 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | GeForce GTX 680 | 1 | 3.74 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 7.68 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 9.96 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 10.53 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.3.0 | double | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | GeForce GTX 680 | 1 | 15.19 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 1.64 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 2.80 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | GeForce GTX 680 | 1 | 3.86 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.2.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 7.86 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Quadro M6000 | 1 | 1.41 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla K40c | 1 | 2.37 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | GeForce GTX 680 | 1 | 3.31 |
2015/12/14 | collins | gcc 4.9.3 | 7.5 | 1.1.1 | single | 64,000 | Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz | Tesla C2070 | 1 | 6.12 |
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