In [1]:
import util
import os
from IPython.core.display import Markdown
benchmark = 'hexagon'
In [2]:
Markdown(open(os.path.join(benchmark, 'README.md'), 'r').read())
Out[2]:

hexagon benchmark

The hexagon benchmark runs a system of $1024^2$ hexagons using hard particle Monte Carlo. At this density, the system is in the middle of the hexatic phase. This model is used in the research article: J. A. Anderson, J. Antonaglia, J. A. Millan, M. Engel, and S. C. Glotzer, Phys. Rev. X, vol. 7, no. 2, p. 21001, Apr. 2017.

Parameters:

  • $N = 1,048,576$
  • Hard particle Monte Carlo
    • Vertices: [[0.5,0],[0.25,0.433012701892219],[-0.25,0.433012701892219],[-0.5,0],[-0.25,-0.433012701892219],[0.25,-0.433012701892219]]
    • $d = 0.17010672166874857$
    • $a = 1.0471975511965976$
    • $n_\mathrm{select} = 4$
  • Log file period: 10000 time steps
  • SDF analysis
    • $x_\mathrm{max} = =0.02$
    • $\delta x = 10^{-4}$
    • period: 50 time steps
    • $n_\mathrm{avg} = 2000$
  • DCD dump period: 100000

Performance data

Performance results are reported in hours to complete ten million Monte Carlo sweeps, where one sweep is N trial moves.

In [3]:
rows = util.read_rows(benchmark)
table = util.make_table(rows)
Markdown(table)
Out[3]:
Date System Compiler CUDA HOOMD Precision N CPU GPU Ranks Time for 10e6 steps (hours)
2018/01/15 comet gcc 4.9.2 8.0 2.2.2 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz Tesla P100-PCIE-16GB 16 7.23
2018/01/15 comet gcc 4.9.2 8.0 2.2.2 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz Tesla P100-PCIE-16GB 4 8.72
2018/01/15 comet gcc 4.9.2 8.0 2.2.2 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz Tesla P100-PCIE-16GB 1 29.06
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K80 64 2.15
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla P100-PCIE-16GB 16 2.44
2016/10/24 titan gcc 4.9.3 7.5 2.1.1 double 1,048,576 6-Core AMD Opteron(tm) Processor 23 (D0) Tesla K20X 64 2.45
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K80 16 5.65
2016/10/24 titan gcc 4.9.3 7.5 2.1.1 double 1,048,576 6-Core AMD Opteron(tm) Processor 23 (D0) Tesla K20X 16 6.96
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla P100-PCIE-16GB 4 8.38
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K40m 4 17.53
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K80 4 19.58
2016/10/24 titan gcc 4.9.3 7.5 2.1.1 double 1,048,576 6-Core AMD Opteron(tm) Processor 23 (D0) Tesla K20X 4 28.37
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla P100-PCIE-16GB 1 28.96
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla M40 24GB 1 46.18
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K80 1 50.13
2016/10/23 psg gcc 4.8.5 8.0 2.1.1 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K40m 1 61.42
2016/10/24 titan gcc 4.9.3 7.5 2.1.1 double 1,048,576 6-Core AMD Opteron(tm) Processor 23 (D0) Tesla K20X 1 102.01
2016/10/12 psg gcc 4.8.5 8.0 2.1.0 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla P100-PCIE-16GB 1 28.90
2016/10/13 psg gcc 4.8.5 7.5 2.1.0 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla M40 24GB 1 46.47
2016/10/12 psg gcc 4.8.5 8.0 2.1.0 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K80 1 50.85
2016/10/13 psg gcc 4.8.5 7.5 2.1.0 double 1,048,576 Intel(R) Xeon(R) CPU E5-2698 v3 @ 2.30GHz Tesla K40m 1 61.47
2016/09/13 flux gcc 4.9.3 7.5 2.0.3 double 1,048,576 6-Core AMD Opteron(tm) Processor 23 (D0) Tesla K20X 64 2.45
2016/09/13 collins gcc 4.8.5 7.5 2.0.3 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz TITAN X 1 38.81
2016/09/13 collins gcc 4.8.5 7.5 2.0.3 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz Quadro M6000 1 45.54
2016/09/13 collins gcc 4.8.5 7.5 2.0.3 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz Tesla K40c 1 54.62
2016/09/13 collins gcc 4.8.5 7.5 2.0.3 double 1,048,576 Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz GeForce GTX 680 1 84.30
In [4]:
from IPython.display import HTML

#Hide code blocks
HTML('''<script>
code_show=true; 
function code_toggle() {
 if (code_show){
 $('div.input').hide();
 } else {
 $('div.input').show();
 }
 code_show = !code_show
} 
$( document ).ready(code_toggle);
</script>
The raw code for this IPython notebook is by default hidden for easier reading.To toggle on/off the raw code, click <a href="javascript:code_toggle()">here</a>.''')
Out[4]:
The raw code for this IPython notebook is by default hidden for easier reading.To toggle on/off the raw code, click here.
In [ ]: