Dask arrays coordinate many Numpy arrays, arranged into chunks within a grid. They support a large subset of the Numpy API.
Starting the Dask Client is optional. It will provide a dashboard which is useful to gain insight on the computation.
The link to the dashboard will become visible when you create the client below. We recommend having it open on one side of your screen while using your notebook on the other side. This can take some effort to arrange your windows, but seeing them both at the same is very useful when learning.
from dask.distributed import Client, progress
client = Client(processes=False, threads_per_worker=4,
n_workers=1, memory_limit='2GB')
client
Client-d7513320-0ddf-11ed-9808-000d3a8f7959
Connection method: Cluster object | Cluster type: distributed.LocalCluster |
Dashboard: http://10.1.1.64:8787/status |
eced48ba
Dashboard: http://10.1.1.64:8787/status | Workers: 1 |
Total threads: 4 | Total memory: 1.86 GiB |
Status: running | Using processes: False |
Scheduler-245cbcab-5c52-43bc-bcad-524a2981a5bf
Comm: inproc://10.1.1.64/6152/1 | Workers: 1 |
Dashboard: http://10.1.1.64:8787/status | Total threads: 4 |
Started: Just now | Total memory: 1.86 GiB |
Comm: inproc://10.1.1.64/6152/4 | Total threads: 4 |
Dashboard: http://10.1.1.64:36121/status | Memory: 1.86 GiB |
Nanny: None | |
Local directory: /home/runner/work/dask-examples/dask-examples/dask-worker-space/worker-94bm6jfp |
This creates a 10000x10000 array of random numbers, represented as many numpy arrays of size 1000x1000 (or smaller if the array cannot be divided evenly). In this case there are 100 (10x10) numpy arrays of size 1000x1000.
import dask.array as da
x = da.random.random((10000, 10000), chunks=(1000, 1000))
x
|
Use NumPy syntax as usual
y = x + x.T
z = y[::2, 5000:].mean(axis=1)
z
|
Call .compute()
when you want your result as a NumPy array.
If you started Client()
above then you may want to watch the status page during computation.
z.compute()
array([1.00226063, 1.01066798, 1.00353892, ..., 1.00020978, 1.00972641, 0.99609573])
If you have the available RAM for your dataset then you can persist data in memory.
This allows future computations to be much faster.
y = y.persist()
%time y[0, 0].compute()
CPU times: user 1.53 s, sys: 338 ms, total: 1.86 s Wall time: 1.04 s
0.6048766839597692
%time y.sum().compute()
CPU times: user 399 ms, sys: 53.2 ms, total: 452 ms Wall time: 298 ms
99992368.08411336
A more in-depth guide to working with Dask arrays can be found in the dask tutorial, notebook 03.