This notebook shows how to use biolqm
to upload a model and compute its fixpoints.
from colomoto_jupyter import tabulate
import biolqm
You can upload a model in any format supported by bioLQM
(see https://github.com/colomoto/bioLQM#how-to-use-it), including GINsim (.zginml
or .ginml
files) and SBML-qual (.sbml
files).
lqm = biolqm.upload()
The following cell code computes the fixpoints, and use tabulate
to display the resulting table.
fps = biolqm.fixpoints(lqm)
tabulate(fps)