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..
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CheckFASTA-checkpoint.ipynb
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CheckVCF-checkpoint.ipynb
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CompareTCGA_alignment_w_mine_pipe-checkpoint.ipynb
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Compare_TCGA_RNAseq_WXS-checkpoint.ipynb
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Compare_TCGA_RNAseq_WXS_Germline_AllFiles-checkpoint.ipynb
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Compare_TCGA_RNAseq_WXS_Germline_OneFile-checkpoint.ipynb
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Compare_TCGA_RNAseq_WXS_IDH1_only-checkpoint.ipynb
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Compare_TCGA_RNAseq_WXS_allOverlapSites-checkpoint.ipynb
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FindStudiesWithBrafV600Mutated-checkpoint.ipynb
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GenerateEmptyPicklesForEachSpecies-checkpoint.ipynb
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MaskingGenomeWithSnp_Specie-checkpoint.ipynb
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MaskingGenomeWithSnp_human-checkpoint.ipynb
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MergeViralAndBacterial-checkpoint.ipynb
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ParseAndMergeBamReadCount-checkpoint.ipynb
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Pull_TCGA_meta_data-checkpoint.ipynb
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README_TCGA_benchmark-checkpoint.ipynb
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Scratch-checkpoint.ipynb
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UCSCBedsToSpecieBeds-checkpoint.ipynb
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Untitled-checkpoint.ipynb
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Untitled1-checkpoint.ipynb
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Untitled2-checkpoint.ipynb
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Untitled3-checkpoint.ipynb
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Untitled4-checkpoint.ipynb
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basicQualityCheck-checkpoint.ipynb
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checkAllelicSpecificExpression-checkpoint.ipynb
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checkLiftByChromOverCoverage-checkpoint.ipynb
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checkSNPsMouse-checkpoint.ipynb
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conver_bed_to_uscs-checkpoint.ipynb
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correlateSites__MyPipe_and_TcgaPipe-checkpoint.ipynb
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downloadingVCFs-checkpoint.ipynb
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evaluateDuplicateRemovalAllelicFraction-checkpoint.ipynb
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evaluateDuplicateRemovalAllelicReadCounts-checkpoint.ipynb
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findOutWhereTheSiteAreFrom-checkpoint.ipynb
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identify_TCGA_WXS_RNAseq_runs-checkpoint.ipynb
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liftOverAllSNPCorrdinates-checkpoint.ipynb
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mergeBamReadCount.v2-checkpoint.ipynb
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mergeMicrobeFastas-checkpoint.ipynb
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mergeTCGA_VCF-checkpoint.ipynb
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old_BuildReferenceWithMicrobes-checkpoint.ipynb
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old_MaskingGenomeWithSnp_Specie-checkpoint.ipynb
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old_ParseAndMergeBamReadCount.v2-checkpoint.ipynb
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old_downloadTCGA_LGG-checkpoint.ipynb
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parquet-checkpoint.ipynb
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pyLiftOver-checkpoint.ipynb
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remergeBasedOnSRR_RunIDs-checkpoint.ipynb
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scratch_delete-checkpoint.ipynb
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testOne-checkpoint.ipynb
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uploadDataToSynapseList-checkpoint.ipynb
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uploadMetaDataToSynapseList-checkpoint.ipynb
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