import pandas as pd
import numpy as np
from tqdm import tqdm
uploadDirs=['/cellar/users/btsui/Data/SRA/DUMP/allSRS.pickle.gz',
'/cellar/users/btsui/Data/SRA/DUMP/allSRX.pickle.gz',
'/cellar/users/btsui/Data/SRA/DUMP/sra_dump.fastqc.bowtie_algn.pickle']
import os
#syn15624400
synaspeFolderId='syn15661258'
!synapse login
Welcome, Brian Yik Tak Tsui! Logged in as: btsui (3329338)
cmdFmt="synapse add {fDir} --parentId={synaspeFolderId} --annotations 'check https://github.com/brianyiktaktsui/Skymap for more info'"
for inFname in tqdm(uploadDirs):
cmd=cmdFmt.format(fDir=inFname,synaspeFolderId=synaspeFolderId)
out= (os.system(cmd))
100%|██████████| 3/3 [01:02<00:00, 20.83s/it]
#print (cmd)
#!synapse add /cellar/users/btsui/Data/merged/snp/hg38/mergedBySRR/sra_dump.pickle/cellar/users/btsui/Data/SRA/DUMP/sra_dump.fastqc.bowtie_algn.pickle --parentId=syn15661258 --annotations 'check https://github.com/brianyiktaktsui/Skymap for more info'