%matplotlib inline
import pandas as pd
import numpy as np
import re
import os
import math
from multiprocessing import Pool
from tqdm import tqdm
from scipy import stats
## init
mySpecie='Homo_sapiens'
#prealigned_dir='/cellar/users/btsui/all_seq_snp/Homo_sapiens_all_merged_snp.TCGA.prealigned.pickle'
targetted_align_dir='/cellar/users/btsui/all_seq_snp/Homo_sapiens_all_merged_snp.TCGA.pickle'
manifest_dir='/cellar/users/btsui/Project/METAMAP/notebook/RapMapTest/XGS_WGS/./tcga_lgg_wgs_bams.df.wxs_rnaseq.pickle'
targetted_df=pd.read_pickle(targetted_align_dir).loc["TCGA"]
all_UUIDs=targetted_df.index.get_level_values('Run_digits').unique()
#883, 1427
print ('n UUID:',len(all_UUIDs))
n UUID: 1570
#targetted_df.head()
### use andrea mapping to map from TCGA barcode to UUID.
manifest_df=pd.read_pickle(manifest_dir)
manifest_df['processed']=manifest_df.file_id.isin(all_UUIDs)
uuid_barcode_mapDf=pd.read_csv('/cellar/users/andreabc/GDC_barcodes/uuid_barcode_map.txt',sep='\t').set_index('file_id')
manifest_df['sample_barcode']=uuid_barcode_mapDf.loc[manifest_df.file_id]['sample_barcode'].values
m_data_category=manifest_df.data_category=='Raw Sequencing Data'
m_experimental_strategy=manifest_df['experimental_strategy'].isin(['RNA-Seq','WXS'])
manifest_df_sub=manifest_df[manifest_df['processed']&m_data_category&m_experimental_strategy]
tmpVC=manifest_df_sub['sample_barcode'].value_counts()
with_both=tmpVC.index[tmpVC==2]
len(with_both)
524
manifest_df_w_RNA_WXS=manifest_df_sub[manifest_df_sub.sample_barcode.isin(with_both)]
#g=manifest_df_w_RNA_WXS.groupby(['sample_barcode','experimental_strategy'])
#[manifest_df_sub['sample_barcode']=='TCGA-HT-A4DV-01A']
#manifest_df_sub
#queryBarcode='TCGA-HT-A4DV-01A'
#rnaseq_uuid=g.get_group((queryBarcode,'RNA-Seq'))['file_id'].iloc[0]
#wxs_uuid=g.get_group((queryBarcode,'WXS'))['file_id'].iloc[0]
rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='WXS']['file_id'].unique()
targetted_df.head()
features | ReadDepth | AverageBaseQuality | |||
---|---|---|---|---|---|
Run_digits | Chr | Pos | base | ||
08ce1dd9-3167-4fe4-8619-724727a32a36 | 1 | 14727 | A | 18 | 28 |
G | 280 | 32 | |||
630825 | T | 11 | 32 | ||
630833 | C | 9 | 34 | ||
833068 | G | 2 | 34 |
inVcfDir='/data/cellardata/users/btsui/dbsnp/Homo_sapiens/All_20170710.f1_byte2_not_00.vcf.gz'
vcfDf=pd.read_csv(inVcfDir,sep='\t',header=None)
vcfDf.columns=['Chr','Pos','RsId','RefBase','AltBase','','','Annot']
vcfDf['Chr']=vcfDf['Chr'].astype(np.str)
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/IPython/core/interactiveshell.py:2785: DtypeWarning: Columns (0) have mixed types. Specify dtype option on import or set low_memory=False. interactivity=interactivity, compiler=compiler, result=result)
"""for _,vcfDfRowS in vcfDf.iterrows():
query_chromosome,qeury_corrdinate=vcfDfRowS['Chr'],vcfDfRowS['Pos']
selectedBase=vcfDfRowS['AltBase']
break"""
varscanVcfMerged=pd.read_pickle('/cellar/users/btsui/Project/METAMAP/notebook/RapMapTest/XGS_WGS/Data/TCGA_VCF.varscan_dr.pickle')
varscanVcfMerged.head()
Group | one_vcf_df | ... | normal_df | INFO | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
VCF_columns | index | CHROM | POS | ID | REF | ALT | QUAL | FILTER | INFO | FORMAT | ... | DP | RD | AD | FREQ | DP4 | DP | GPV | SPV | SS | SSC | ||
TUMOR | NORMAL | ||||||||||||||||||||||
TCGA-DU-5870-01A-11D-1705-08 | TCGA-DU-5870-10A-01D-1705-08 | 0 | 0 | chr1 | 944131 | . | A | C | . | PASS | DP=89;GPV=1E0;SOMATIC;SPV=5.0789E-2;SS=2;SSC=12 | GT:GQ:DP:RD:AD:FREQ:DP4 | ... | 20 | 18 | 2 | 10% | 8,10,0,2 | 89 | 1E0 | 5.0789E-2 | 2 | 12 |
1 | 1 | chr1 | 944136 | . | T | C | . | PASS | DP=92;GPV=1E0;SOMATIC;SPV=1.8932E-2;SS=2;SSC=17 | GT:GQ:DP:RD:AD:FREQ:DP4 | ... | 25 | 22 | 3 | 12% | 10,12,0,3 | 92 | 1E0 | 1.8932E-2 | 2 | 17 | ||
2 | 2 | chr1 | 1300684 | . | C | A | . | PASS | DP=71;GPV=1E0;SOMATIC;SPV=6.3354E-2;SS=2;SSC=11 | GT:GQ:DP:RD:AD:FREQ:DP4 | ... | 18 | 16 | 2 | 11.11% | 7,9,0,2 | 71 | 1E0 | 6.3354E-2 | 2 | 11 | ||
3 | 3 | chr1 | 1713611 | . | C | T | . | PASS | DP=59;GPV=1E0;SOMATIC;SPV=4.5001E-3;SS=2;SSC=23 | GT:GQ:DP:RD:AD:FREQ:DP4 | ... | 14 | 8 | 5 | 38.46% | 5,3,1,4 | 59 | 1E0 | 4.5001E-3 | 2 | 23 | ||
4 | 4 | chr1 | 1713674 | . | T | C | . | PASS | DP=42;GPV=1E0;SOMATIC;SPV=3.252E-2;SS=2;SSC=14 | GT:GQ:DP:RD:AD:FREQ:DP4 | ... | 8 | 6 | 2 | 25% | 0,6,0,2 | 42 | 1E0 | 3.252E-2 | 2 | 14 |
5 rows × 31 columns
topTcgaVcfDf=varscanVcfMerged['one_vcf_df'].groupby(
['CHROM','POS','ALT']).size().sort_values(ascending=False).reset_index(name='Count')#.iloc[:100]
#topTcgaVcfDf.iloc[:100]
#371/524.0
#topTcgaVcfDf['Count']
topTcgaVcfDf['CHROM']=topTcgaVcfDf['CHROM'].str.replace('chr','')
tmpDf=topTcgaVcfDf.set_index(['CHROM','POS'],drop=False)
targetted_multI=vcfDf.set_index(['Chr','Pos']).index
#altBaseS=vcfDf.set_index(['Chr','Pos'])['AltBase'].str.split(',',expand=True).stack()
#chrPosAltI=altBaseS.reset_index(name='AltBase').set_index(['Chr','Pos','AltBase']).index
tmpDf.head()
CHROM | POS | ALT | Count | in_targeted_ref | ||
---|---|---|---|---|---|---|
CHROM | POS | |||||
2 | 208248388 | 2 | 208248388 | T | 371 | True |
17 | 7673803 | 17 | 7673803 | A | 59 | True |
11 | 78226616 | 11 | 78226616 | G | 31 | False |
16 | 15763747 | 16 | 15763747 | C | 30 | False |
3 | 186079938 | 3 | 186079938 | G | 29 | False |
tmpDf['in_targeted_ref']=tmpDf.index.isin(targetted_multI)
#tmpDf['in_targeted_ref']
tmpDf[tmpDf['Count']>20]['in_targeted_ref'].sum()
len(tmpDf[tmpDf['Count']>20]['in_targeted_ref'])
77
tmpDf['in_targeted_ref'].mean()
0.014626543579906486
topTcgaVcfDf_inTargeted=tmpDf[tmpDf['in_targeted_ref']]
topTcgaVcfDf_inTargeted
CHROM | POS | ALT | Count | ||
---|---|---|---|---|---|
CHROM | POS | ||||
2 | 208248388 | 2 | 208248388 | T | 371 |
17 | 7673803 | 17 | 7673803 | A | 59 |
11 | 46778229 | 11 | 46778229 | C | 20 |
61955099 | 11 | 61955099 | C | 19 | |
2 | 208248389 | 2 | 208248389 | A | 17 |
14 | 32092134 | 14 | 32092134 | A | 14 |
20 | 10645368 | 20 | 10645368 | G | 13 |
2 | 208248389 | 2 | 208248389 | C | 12 |
15 | 90088606 | 15 | 90088606 | T | 12 |
17 | 7673802 | 17 | 7673802 | T | 11 |
8 | 142877758 | 8 | 142877758 | C | 11 |
X | 24789042 | X | 24789042 | T | 11 |
2 | 178554496 | 2 | 178554496 | C | 10 |
1 | 109690516 | 1 | 109690516 | C | 10 |
17 | 7674872 | 17 | 7674872 | C | 10 |
13 | 95062893 | 13 | 95062893 | A | 9 |
6 | 29944050 | 6 | 29944050 | A | 9 |
2 | 208248389 | 2 | 208248389 | T | 9 |
10 | 38641086 | 10 | 38641086 | A | 9 |
3 | 10063977 | 3 | 10063977 | C | 9 |
X | 24788994 | X | 24788994 | T | 9 |
12 | 6018369 | 12 | 6018369 | G | 9 |
49951033 | 12 | 49951033 | C | 8 | |
6 | 80127535 | 6 | 80127535 | T | 8 |
17 | 7674220 | 17 | 7674220 | T | 8 |
7675076 | 17 | 7675076 | C | 8 | |
7675088 | 17 | 7675088 | T | 8 | |
1 | 215786811 | 1 | 215786811 | C | 8 |
7 | 140734786 | 7 | 140734786 | A | 8 |
19 | 41009358 | 19 | 41009358 | G | 8 |
... | ... | ... | ... | ... | ... |
4 | 6302187 | 4 | 6302187 | A | 1 |
8005201 | 4 | 8005201 | T | 1 | |
7654128 | 4 | 7654128 | T | 1 | |
3 | 195699434 | 3 | 195699434 | C | 1 |
193645626 | 3 | 193645626 | A | 1 | |
4 | 947730 | 4 | 947730 | T | 1 |
3 | 196230099 | 3 | 196230099 | T | 1 |
100728780 | 3 | 100728780 | T | 1 | |
113401767 | 3 | 113401767 | G | 1 | |
114339010 | 3 | 114339010 | T | 1 | |
114339384 | 3 | 114339384 | G | 1 | |
97993153 | 3 | 97993153 | A | 1 | |
73062217 | 3 | 73062217 | C | 1 | |
97768199 | 3 | 97768199 | T | 1 | |
78688812 | 3 | 78688812 | A | 1 | |
78614806 | 3 | 78614806 | A | 1 | |
78627272 | 3 | 78627272 | A | 1 | |
87259754 | 3 | 87259754 | A | 1 | |
132243465 | 3 | 132243465 | G | 1 | |
142547597 | 3 | 142547597 | T | 1 | |
138946428 | 3 | 138946428 | T | 1 | |
139495061 | 3 | 139495061 | G | 1 | |
122261395 | 3 | 122261395 | C | 1 | |
122283764 | 3 | 122283764 | A | 1 | |
123614028 | 3 | 123614028 | G | 1 | |
119876393 | 3 | 119876393 | TA | 1 | |
120638490 | 3 | 120638490 | A | 1 | |
129528683 | 3 | 129528683 | A | 1 | |
129528708 | 3 | 129528708 | G | 1 | |
126131662 | 3 | 126131662 | A | 1 |
2196 rows × 4 columns
threshold=2
#threshold=2
#selectedBase='T'
#query_chromosome, qeury_corrdinate='2',208248388
failedS_L=[]
roc_auc_l=[]
#m_chr=targetted_df.index.get_level_values('Chr')==query_chromosome
Pos_array=targetted_df.index.get_level_values('Pos')
successCount=0
for vcfIndex,vcfDfRowS in topTcgaVcfDf_inTargeted.iterrows():
try:
query_chromosome,qeury_corrdinate=vcfDfRowS['CHROM'].replace('chr',''),vcfDfRowS['POS']
selectedBases=vcfDfRowS['ALT']
window_size=0
m_pos=(Pos_array>=(qeury_corrdinate-window_size))&(Pos_array<=(qeury_corrdinate+window_size))
if m_pos.sum()<10:
print ('failed')
continue
m_qual=targetted_df['AverageBaseQuality']>=30
#if m_pos.sum()>=0:
targetted_df_sub=targetted_df[m_pos&m_qual]
index_metaDf=targetted_df_sub.index.to_frame()
index_metaDf['sample_barcode']=manifest_df_w_RNA_WXS.set_index('file_id').loc[index_metaDf['Run_digits']]['sample_barcode'].values
multI=index_metaDf.set_index(['sample_barcode','Run_digits','Chr','Pos','base']).index
targetted_df_sub.index=multI
rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='RNA-Seq']['file_id'].unique()
m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(rnaseq_uuids)
rnaseq_df=targetted_df_sub[m_uuid]
groupings_L=['sample_barcode','Chr','Pos','base']
rnaseq_df=rnaseq_df.groupby(groupings_L).first()
wxs_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='WXS']['file_id'].unique()
m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(wxs_uuids)
wxs_df=targetted_df_sub[m_uuid]
wxs_df=wxs_df.groupby(groupings_L).first()
mergedDf=pd.concat([ rnaseq_df,wxs_df],axis=1,keys=['rna-seq','wxs'])
mergedDf['wxs']['ReadDepth']=mergedDf['wxs']['ReadDepth'].fillna(0)
#mergedDf
#for the whole
from sklearn import metrics
#### get the homozygous
wxsWithDataDf=mergedDf#[mergedDf['wxs']['ReadDepth']>=threshold]
sampleRdS=wxsWithDataDf['wxs'].groupby('sample_barcode')['ReadDepth'].sum()
sampleRdS_rnaseq=wxsWithDataDf['rna-seq'].groupby('sample_barcode')['ReadDepth'].sum()
xwsSamplesWithCoverage=sampleRdS.index[sampleRdS>=threshold]
m_base=wxsWithDataDf.index.get_level_values('base')==selectedBase
m_wxs_coverage=wxsWithDataDf.index.get_level_values('sample_barcode').isin(xwsSamplesWithCoverage)
m_valid_all=mergedDf.notnull().all(axis=1)
wxsWithDataDf_base=wxsWithDataDf[m_base&m_wxs_coverage]
wxsWithDataDf_base['rna-seq']=wxsWithDataDf_base['rna-seq'].fillna(0)
y_true=wxsWithDataDf_base['wxs']['ReadDepth']>=threshold
precision,recall,_=metrics.precision_recall_curve(y_true,
wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0))
roc_auc=metrics.roc_auc_score(y_true,
wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0))
auprc=metrics.auc(recall,precision)
#print (auprc,wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0).mean())
myResultL=[{'auprc':auprc,'vcfIndex':vcfIndex,"rocauc":roc_auc,
'rnaseq_rd':sampleRdS_rnaseq.mean(),
'rnaseq_n':((sampleRdS_rnaseq>=10).sum())}]
roc_auc_l+= myResultL
print (myResultL)
successCount+=1
print (successCount)
except ValueError:#ValueError
failedS_L.append(vcfDfRowS)
print ('failed')
#group=wxsWithDataDf.groupby('base')
#for base, df in group:
# break
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9982105610204264, 'vcfIndex': ('2', 208248388), 'rocauc': 0.9842904603701946, 'rnaseq_rd': 133.82251908396947, 'rnaseq_n': 519}] 1
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5436157339090322, 'vcfIndex': ('17', 7673803), 'rocauc': 0.9452658347625525, 'rnaseq_rd': 122.07633587786259, 'rnaseq_n': 520}] 2
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8651493930905695, 'vcfIndex': ('2', 208248389), 'rocauc': 0.8964102564102564, 'rnaseq_rd': 133.3759541984733, 'rnaseq_n': 519}] 3
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9915456162454604, 'vcfIndex': ('14', 32092134), 'rocauc': 0.5077669902912622, 'rnaseq_rd': 38.31297709923664, 'rnaseq_n': 457}] 4
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9517857142857143, 'vcfIndex': ('2', 208248389), 'rocauc': 0.9577020202020201, 'rnaseq_rd': 133.3759541984733, 'rnaseq_n': 519}] 5
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 1.0, 'vcfIndex': ('15', 90088606), 'rocauc': 1.0, 'rnaseq_rd': 353.8416030534351, 'rnaseq_n': 524}] 6
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.954090909090909, 'vcfIndex': ('17', 7673802), 'rocauc': 0.9488888888888888, 'rnaseq_rd': 121.37284894837477, 'rnaseq_n': 520}] 7
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7384169884169884, 'vcfIndex': ('8', 142877758), 'rocauc': 0.5, 'rnaseq_rd': 0.0019305019305019305, 'rnaseq_n': 0}] 8
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9895369944981679, 'vcfIndex': ('X', 24789042), 'rocauc': 0.5035885167464115, 'rnaseq_rd': 5.2629482071713145, 'rnaseq_n': 91}] 9
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9999400689281579, 'vcfIndex': ('1', 109690516), 'rocauc': 0.9965412883700822, 'rnaseq_rd': 210.7767175572519, 'rnaseq_n': 513}] 10
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9751543209876543, 'vcfIndex': ('17', 7674872), 'rocauc': 0.9993704752911552, 'rnaseq_rd': 59.13549618320611, 'rnaseq_n': 496}] 11 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.6849247001118479, 'vcfIndex': ('6', 29944050), 'rocauc': 0.6133071391504189, 'rnaseq_rd': 16.24236641221374, 'rnaseq_n': 286}] 12
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 1.0, 'vcfIndex': ('2', 208248389), 'rocauc': 1.0, 'rnaseq_rd': 133.3759541984733, 'rnaseq_n': 519}] 13
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.998226347522553, 'vcfIndex': ('X', 24788994), 'rocauc': 0.6949317738791423, 'rnaseq_rd': 1291.3740458015268, 'rnaseq_n': 524}] 14
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9941271648588722, 'vcfIndex': ('12', 6018369), 'rocauc': 0.6216216216216216, 'rnaseq_rd': 36.32053742802303, 'rnaseq_n': 431}] 15
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8950736763236764, 'vcfIndex': ('17', 7674220), 'rocauc': 0.9293664383561644, 'rnaseq_rd': 124.63671128107075, 'rnaseq_n': 520}] 16
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8500000000000001, 'vcfIndex': ('17', 7675076), 'rocauc': 0.9983935742971888, 'rnaseq_rd': 91.69083969465649, 'rnaseq_n': 510}] 17
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7798582995951417, 'vcfIndex': ('17', 7675088), 'rocauc': 0.7655677655677655, 'rnaseq_rd': 107.20537428023033, 'rnaseq_n': 509}] 18
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9242947346041334, 'vcfIndex': ('12', 6018901), 'rocauc': 0.6154363110008272, 'rnaseq_rd': 79.05152671755725, 'rnaseq_n': 502}] 19
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.967687875497635, 'vcfIndex': ('6', 31271836), 'rocauc': 0.6717948717948719, 'rnaseq_rd': 950.9332061068702, 'rnaseq_n': 524}] 20
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5249729346906801, 'vcfIndex': ('6', 31356729), 'rocauc': 0.4567348881485007, 'rnaseq_rd': 1370.7922330097088, 'rnaseq_n': 502}] 21 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9664750957854407, 'vcfIndex': ('7', 117548682), 'rocauc': 0.5, 'rnaseq_rd': 0.39272030651340994, 'rnaseq_n': 1}] 22
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8435959942590133, 'vcfIndex': ('6', 29943406), 'rocauc': 0.4709963985594237, 'rnaseq_rd': 2902.0687022900765, 'rnaseq_n': 522}] 23
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.6240315082644627, 'vcfIndex': ('6', 29943422), 'rocauc': 0.5176321912862072, 'rnaseq_rd': 2319.403474903475, 'rnaseq_n': 480}] 24
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9999999999999998, 'vcfIndex': ('17', 7674221), 'rocauc': 1.0, 'rnaseq_rd': 123.95602294455067, 'rnaseq_n': 520}] 25
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9769153916419274, 'vcfIndex': ('7', 142750675), 'rocauc': 0.49849488260084285, 'rnaseq_rd': 0.3199152542372881, 'rnaseq_n': 3}] 26
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8815028901734103, 'vcfIndex': ('7', 152238825), 'rocauc': 0.5, 'rnaseq_rd': 9.790076335877863, 'rnaseq_n': 212}] 27
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7770187787215652, 'vcfIndex': ('17', 7673776), 'rocauc': 0.8756735950731331, 'rnaseq_rd': 121.84351145038168, 'rnaseq_n': 518}] 28
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5016891891891891, 'vcfIndex': ('9', 128257486), 'rocauc': 0.5, 'rnaseq_rd': 84.02579365079364, 'rnaseq_n': 472}] 29
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9621421257423716, 'vcfIndex': ('7', 142750600), 'rocauc': 0.5010526315789474, 'rnaseq_rd': 0.21595330739299612, 'rnaseq_n': 4}] 30
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.11665167191482981, 'vcfIndex': ('7', 55165350), 'rocauc': 0.6013007054673721, 'rnaseq_rd': 300.21946564885496, 'rnaseq_n': 481}] 31 failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9994991036591797, 'vcfIndex': ('12', 2685853), 'rocauc': 0.7816091954022988, 'rnaseq_rd': 2.092741935483871, 'rnaseq_n': 8}] 32
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9612392525801189, 'vcfIndex': ('4', 144120554), 'rocauc': 0.4796998031496063, 'rnaseq_rd': 0.49236641221374045, 'rnaseq_n': 3}] 33
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8670477230214318, 'vcfIndex': ('6', 29944118), 'rocauc': 0.6404452281243111, 'rnaseq_rd': 18.980582524271846, 'rnaseq_n': 315}] 34 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8319444444444444, 'vcfIndex': ('17', 7674230), 'rocauc': 0.8713235294117647, 'rnaseq_rd': 120.80534351145039, 'rnaseq_n': 519}] 35
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7957251082251082, 'vcfIndex': ('17', 7674945), 'rocauc': 0.869140625, 'rnaseq_rd': 99.9675572519084, 'rnaseq_n': 513}] 36
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9917339294729354, 'vcfIndex': ('19', 14766987), 'rocauc': 0.5071428571428571, 'rnaseq_rd': 1.315487571701721, 'rnaseq_n': 9}] 37
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.718190399137001, 'vcfIndex': ('7', 55154129), 'rocauc': 0.8454455445544554, 'rnaseq_rd': 182.2767175572519, 'rnaseq_n': 464}] 38
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9565217391304348, 'vcfIndex': ('7', 127611678), 'rocauc': 0.5, 'rnaseq_rd': 0.06451612903225806, 'rnaseq_n': 0}] 39
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9811409712399812, 'vcfIndex': ('1', 235775088), 'rocauc': 0.504950495049505, 'rnaseq_rd': 0.0136986301369863, 'rnaseq_n': 0}] 40
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9224825164827356, 'vcfIndex': ('1', 173828313), 'rocauc': 0.501444707118466, 'rnaseq_rd': 2.292089249492901, 'rnaseq_n': 1}] 41
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9913282738681911, 'vcfIndex': ('2', 166281810), 'rocauc': 0.5231741573033708, 'rnaseq_rd': 1.3317073170731708, 'rnaseq_n': 15}] 42
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9444444444444444, 'vcfIndex': ('6', 32664778), 'rocauc': 0.5, 'rnaseq_rd': 2.370212765957447, 'rnaseq_n': 8}] 43
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.07298916724566964, 'vcfIndex': ('6', 31270232), 'rocauc': 0.5693114455084359, 'rnaseq_rd': 747.1783567134269, 'rnaseq_n': 401}] 44
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8904019236433559, 'vcfIndex': ('12', 52897420), 'rocauc': 0.5084404879657105, 'rnaseq_rd': 7.585603112840467, 'rnaseq_n': 71}] 45
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.559769267265185, 'vcfIndex': ('6', 29942825), 'rocauc': 0.797976477463657, 'rnaseq_rd': 2793.31106870229, 'rnaseq_n': 524}] 46
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.46834657753136016, 'vcfIndex': ('6', 29942845), 'rocauc': 0.4998989898989899, 'rnaseq_rd': 2905.9483747609943, 'rnaseq_n': 517}] 47
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9229132597203707, 'vcfIndex': ('6', 29944102), 'rocauc': 0.7980787271567413, 'rnaseq_rd': 21.58206106870229, 'rnaseq_n': 368}] 48
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8023328381245963, 'vcfIndex': ('6', 29944103), 'rocauc': 0.7773660377358491, 'rnaseq_rd': 21.608778625954198, 'rnaseq_n': 371}] 49
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9422616789380488, 'vcfIndex': ('6', 29944168), 'rocauc': 0.9607098982098983, 'rnaseq_rd': 4361.543893129771, 'rnaseq_n': 524}] 50
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5614637623652268, 'vcfIndex': ('12', 6018910), 'rocauc': 0.5450518969219758, 'rnaseq_rd': 73.97137404580153, 'rnaseq_n': 500}] 51 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9961163900517636, 'vcfIndex': ('5', 236441), 'rocauc': 0.5004950495049505, 'rnaseq_rd': 189.5229007633588, 'rnaseq_n': 524}] 52
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7945205479452055, 'vcfIndex': ('3', 10064460), 'rocauc': 0.5, 'rnaseq_rd': 0.26705653021442494, 'rnaseq_n': 0}] 53
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5047709923664122, 'vcfIndex': ('3', 179199690), 'rocauc': 0.5, 'rnaseq_rd': 10.774809160305344, 'rnaseq_n': 237}] 54 failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8408395548245163, 'vcfIndex': ('6', 32661364), 'rocauc': 0.6422820109976433, 'rnaseq_rd': 113.46332046332046, 'rnaseq_n': 358}] 55
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9645215692947171, 'vcfIndex': ('6', 32661416), 'rocauc': 0.6010173721086477, 'rnaseq_rd': 214.6240458015267, 'rnaseq_n': 489}] 56
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.035856045886774615, 'vcfIndex': ('22', 42127537), 'rocauc': 0.4298987568883762, 'rnaseq_rd': 17.948374760994263, 'rnaseq_n': 355}] 57
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9957796476538225, 'vcfIndex': ('6', 32661360), 'rocauc': 0.4311175337186898, 'rnaseq_rd': 97.21606118546845, 'rnaseq_n': 337}] 58 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9604493382073076, 'vcfIndex': ('6', 29943620), 'rocauc': 0.546979136482179, 'rnaseq_rd': 12.659655831739961, 'rnaseq_n': 238}] 59
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7750889986870693, 'vcfIndex': ('6', 29944059), 'rocauc': 0.6722366428725935, 'rnaseq_rd': 17.18320610687023, 'rnaseq_n': 315}] 60
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9842224503338726, 'vcfIndex': ('6', 29944067), 'rocauc': 0.8036034099863886, 'rnaseq_rd': 16.535372848948374, 'rnaseq_n': 315}] 61
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 1.0, 'vcfIndex': ('17', 7673802), 'rocauc': 1.0, 'rnaseq_rd': 121.37284894837477, 'rnaseq_n': 520}] 62 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.916660412249664, 'vcfIndex': ('6', 31270233), 'rocauc': 0.916426282051282, 'rnaseq_rd': 759.4716599190283, 'rnaseq_n': 399}] 63
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.556916142332809, 'vcfIndex': ('6', 31270214), 'rocauc': 0.5332680436847104, 'rnaseq_rd': 553.9027484143763, 'rnaseq_n': 283}] 64
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.025849160991704853, 'vcfIndex': ('6', 29944124), 'rocauc': 0.5529550209205021, 'rnaseq_rd': 1296.3773946360154, 'rnaseq_n': 454}] 65
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9161017961737645, 'vcfIndex': ('6', 29944144), 'rocauc': 0.7403100775193798, 'rnaseq_rd': 3459.543893129771, 'rnaseq_n': 524}] 66
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.028600888967876898, 'vcfIndex': ('6', 31356377), 'rocauc': 0.5097844934357196, 'rnaseq_rd': 1758.949290060852, 'rnaseq_n': 484}] 67
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 1.0, 'vcfIndex': ('17', 7676044), 'rocauc': 1.0, 'rnaseq_rd': 115.8530534351145, 'rnaseq_n': 516}] 68
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.3806954647613297, 'vcfIndex': ('6', 29944132), 'rocauc': 0.4973299863076221, 'rnaseq_rd': 2479.959923664122, 'rnaseq_n': 512}] 69
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.0699742223941922, 'vcfIndex': ('6', 29944135), 'rocauc': 0.5997474747474747, 'rnaseq_rd': 2769.6526717557254, 'rnaseq_n': 516}] 70
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.002136752136752137, 'vcfIndex': ('1', 237591774), 'rocauc': 0.4957081545064378, 'rnaseq_rd': 2.042345276872964, 'rnaseq_n': 16}] 71
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8084342436412314, 'vcfIndex': ('6', 29944376), 'rocauc': 0.44202660984072345, 'rnaseq_rd': 3416.6507633587785, 'rnaseq_n': 524}] 72
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.23266786055330774, 'vcfIndex': ('6', 29944151), 'rocauc': 0.6030430131741921, 'rnaseq_rd': 3618.6469465648856, 'rnaseq_n': 524}] 73
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7412910611080881, 'vcfIndex': ('6', 32664883), 'rocauc': 0.6214872353057589, 'rnaseq_rd': 315.19847328244276, 'rnaseq_n': 506}] 74
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.02631578947368421, 'vcfIndex': ('6', 32664926), 'rocauc': 0.7848101265822784, 'rnaseq_rd': 162.30679611650484, 'rnaseq_n': 436}] 75
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8632025962683821, 'vcfIndex': ('10', 4999206), 'rocauc': 0.488385896243062, 'rnaseq_rd': 31.936902485659655, 'rnaseq_n': 395}] 76
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8159076655973716, 'vcfIndex': ('6', 32661393), 'rocauc': 0.9283611212738898, 'rnaseq_rd': 215.2118320610687, 'rnaseq_n': 493}] 77
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.3807472567845822, 'vcfIndex': ('6', 32661384), 'rocauc': 0.5965269883579634, 'rnaseq_rd': 191.68269230769232, 'rnaseq_n': 480}] 78
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7789901876748874, 'vcfIndex': ('6', 32661333), 'rocauc': 0.6450605077908724, 'rnaseq_rd': 2.581081081081081, 'rnaseq_n': 27}] 79 failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.007407407407407408, 'vcfIndex': ('12', 57099758), 'rocauc': 0.48120300751879697, 'rnaseq_rd': 1.3076923076923077, 'rnaseq_n': 0}] 80
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.6419342359767892, 'vcfIndex': ('15', 90088606), 'rocauc': 0.7953125, 'rnaseq_rd': 353.8416030534351, 'rnaseq_n': 524}] 81
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9939342885587993, 'vcfIndex': ('16', 2106849), 'rocauc': 0.5828059071729957, 'rnaseq_rd': 1127.1335877862596, 'rnaseq_n': 523}] 82
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9955220203818337, 'vcfIndex': ('6', 29942795), 'rocauc': 0.9892205638474295, 'rnaseq_rd': 1391.3957528957528, 'rnaseq_n': 517}] 83
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9650234297119815, 'vcfIndex': ('6', 29942858), 'rocauc': 0.8564967105263157, 'rnaseq_rd': 2437.3996101364523, 'rnaseq_n': 510}] 84 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.06198758775750919, 'vcfIndex': ('6', 29942916), 'rocauc': 0.5738773274917853, 'rnaseq_rd': 2200.085877862595, 'rnaseq_n': 524}] 85
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7566018792759621, 'vcfIndex': ('3', 75630855), 'rocauc': 0.6696047008547009, 'rnaseq_rd': 2.614503816793893, 'rnaseq_n': 29}] 86
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.22410008389567063, 'vcfIndex': ('3', 75630794), 'rocauc': 0.5880094043887147, 'rnaseq_rd': 1.72848948374761, 'rnaseq_n': 13}] 87
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.54953216374269, 'vcfIndex': ('3', 49686483), 'rocauc': 0.523888888888889, 'rnaseq_rd': 7.1495098039215685, 'rnaseq_n': 103}] 88
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.6836120401939296, 'vcfIndex': ('6', 29943463), 'rocauc': 0.49917875718587446, 'rnaseq_rd': 1443.973282442748, 'rnaseq_n': 519}] 89
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7588104445940389, 'vcfIndex': ('6', 29943667), 'rocauc': 0.5203029899151451, 'rnaseq_rd': 3.0599613152804643, 'rnaseq_n': 35}] 90
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8581118493909192, 'vcfIndex': ('3', 179234284), 'rocauc': 0.899412915851272, 'rnaseq_rd': 66.98473282442748, 'rnaseq_n': 523}] 91
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8447420634920635, 'vcfIndex': ('17', 7674888), 'rocauc': 0.8747499999999999, 'rnaseq_rd': 88.14312977099236, 'rnaseq_n': 513}] 92
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 1.0, 'vcfIndex': ('17', 7674256), 'rocauc': 1.0, 'rnaseq_rd': 117.52671755725191, 'rnaseq_n': 517}] 93
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.4933284989122553, 'vcfIndex': ('17', 7673704), 'rocauc': 0.6921875, 'rnaseq_rd': 82.12022900763358, 'rnaseq_n': 512}] 94
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.403969764837626, 'vcfIndex': ('17', 21416556), 'rocauc': 0.49095305832147934, 'rnaseq_rd': 3.7862745098039214, 'rnaseq_n': 55}] 95 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.6664588229150348, 'vcfIndex': ('8', 100709671), 'rocauc': 0.5005375347544022, 'rnaseq_rd': 986.1145038167939, 'rnaseq_n': 523}] 96
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9511253035546972, 'vcfIndex': ('3', 183959847), 'rocauc': 0.5092165898617511, 'rnaseq_rd': 0.047244094488188976, 'rnaseq_n': 0}] 97
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.6714060031595577, 'vcfIndex': ('17', 31350209), 'rocauc': 0.7941747572815535, 'rnaseq_rd': 94.85412667946257, 'rnaseq_n': 501}] 98
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5306679511881823, 'vcfIndex': ('5', 68295269), 'rocauc': 0.7383040935672515, 'rnaseq_rd': 380.9942748091603, 'rnaseq_n': 518}] 99
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8707806362334788, 'vcfIndex': ('22', 24627926), 'rocauc': 0.46257135765698687, 'rnaseq_rd': 23.572519083969464, 'rnaseq_n': 495}] 100 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7549019607843137, 'vcfIndex': ('20', 8788776), 'rocauc': 0.5, 'rnaseq_rd': 0.0019569471624266144, 'rnaseq_n': 0}] 101
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.28904720805141565, 'vcfIndex': ('6', 31271875), 'rocauc': 0.5511204481792716, 'rnaseq_rd': 13.273622047244094, 'rnaseq_n': 205}] 102
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.31859276729559743, 'vcfIndex': ('6', 31271839), 'rocauc': 0.5044341216216216, 'rnaseq_rd': 977.5515267175573, 'rnaseq_n': 524}] 103
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9532577753359472, 'vcfIndex': ('6', 31356399), 'rocauc': 0.5825, 'rnaseq_rd': 2469.6111111111113, 'rnaseq_n': 522}] 104 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9719473639237802, 'vcfIndex': ('6', 31270194), 'rocauc': 0.5010638297872341, 'rnaseq_rd': 0.8383233532934131, 'rnaseq_n': 6}] 105
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.8618412368175279, 'vcfIndex': ('5', 256357), 'rocauc': 0.5556620209059233, 'rnaseq_rd': 585.263358778626, 'rnaseq_n': 524}] 106 failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9899327619329097, 'vcfIndex': ('1', 109690525), 'rocauc': 0.8125, 'rnaseq_rd': 274.3692307692308, 'rnaseq_n': 516}] 107
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5019120458891013, 'vcfIndex': ('19', 48978170), 'rocauc': 0.5, 'rnaseq_rd': 3.6583969465648853, 'rnaseq_n': 37}] 108
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9989016231568906, 'vcfIndex': ('11', 49200333), 'rocauc': 0.7138728323699421, 'rnaseq_rd': 43.784351145038165, 'rnaseq_n': 387}] 109
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7739130434782608, 'vcfIndex': ('X', 77684004), 'rocauc': 0.6, 'rnaseq_rd': 34.54780876494024, 'rnaseq_n': 395}] 110
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9501618327788225, 'vcfIndex': ('16', 89100658), 'rocauc': 0.5056053811659192, 'rnaseq_rd': 0.03006012024048096, 'rnaseq_n': 0}] 111
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9944934509489441, 'vcfIndex': ('15', 75689744), 'rocauc': 0.5209302325581395, 'rnaseq_rd': 43.25335892514396, 'rnaseq_n': 421}] 112
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.9983498349834983, 'vcfIndex': ('7', 103661529), 'rocauc': 0.5, 'rnaseq_rd': 0.0, 'rnaseq_n': 0}] 113 failed failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.3868616317146241, 'vcfIndex': ('15', 48465935), 'rocauc': 0.5025573318108288, 'rnaseq_rd': 0.025477707006369428, 'rnaseq_n': 0}] 114
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7978365384615385, 'vcfIndex': ('5', 68293310), 'rocauc': 0.8737887596899224, 'rnaseq_rd': 133.89503816793894, 'rnaseq_n': 504}] 115
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.007692307692307693, 'vcfIndex': ('18', 62252665), 'rocauc': 0.49609375, 'rnaseq_rd': 23.114341085271317, 'rnaseq_n': 442}] 116
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.5844827586206897, 'vcfIndex': ('17', 7675148), 'rocauc': 0.7488452655889145, 'rnaseq_rd': 112.54302103250478, 'rnaseq_n': 510}] 117
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7696078431372548, 'vcfIndex': ('17', 7675140), 'rocauc': 0.75, 'rnaseq_rd': 115.20458891013385, 'rnaseq_n': 512}] 118
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/sklearn/metrics/ranking.py:444: RuntimeWarning: invalid value encountered in true_divide recall = tps / tps[-1]
failed
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 0.7291033594906903, 'vcfIndex': ('11', 17494423), 'rocauc': 0.6473647306298936, 'rnaseq_rd': 2.5657620041753653, 'rnaseq_n': 34}] 119
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:27: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:49: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:73: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
[{'auprc': 1.0, 'vcfIndex': ('17', 7675124), 'rocauc': 1.0, 'rnaseq_rd': 115.92366412213741, 'rnaseq_n': 513}] 120
--------------------------------------------------------------------------- KeyboardInterrupt Traceback (most recent call last) <ipython-input-45-4d2a48276b77> in <module>() 15 window_size=0 16 ---> 17 m_pos=(Pos_array>=(qeury_corrdinate-window_size))&(Pos_array<=(qeury_corrdinate+window_size)) 18 if m_pos.sum()<10: 19 print ('failed') ~/anaconda3/lib/python3.6/site-packages/pandas/core/indexes/base.py in cmp_method(self, other) 108 with warnings.catch_warnings(record=True): 109 with np.errstate(all='ignore'): --> 110 result = op(self.values, np.asarray(other)) 111 112 # technically we could support bool dtyped Index KeyboardInterrupt:
praucDf=pd.DataFrame(roc_auc_l).dropna()#.to_frame('prauc')
praucDf['Chr']=praucDf.vcfIndex.apply(lambda L:L[0])
praucDf['Pos']=praucDf.vcfIndex.apply(lambda L:int(L[1]))
tmpCountS=topTcgaVcfDf_inTargeted.groupby(['CHROM','POS'])['Count'].sum()
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:1: FutureWarning: 'CHROM' is both an index level and a column label. Defaulting to column, but this will raise an ambiguity error in a future version """Entry point for launching an IPython kernel. /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:1: FutureWarning: 'POS' is both an index level and a column label. Defaulting to column, but this will raise an ambiguity error in a future version """Entry point for launching an IPython kernel.
praucDf['tcga_wxs_count']=tmpCountS.loc[praucDf.set_index(['Chr','Pos']).index].values
praucDf.to_pickle('./top_lgg_somatic_sites.pickle')
praucDf['vcfIndex'].apply(lambda L:L[0])
0 2 1 17 2 2 3 14 4 2 5 15 6 17 7 8 8 X 9 1 10 17 11 6 12 2 13 X 14 12 Name: vcfIndex, dtype: object
(praucDf['auprc']<0.1).mean()
0.09
(praucDf['auprc']>0.8).mean()
0.73
praucDf.head()
auprc | rnaseq_n | rnaseq_rd | vcfIndex | |
---|---|---|---|---|
0 | 0.998211 | 519 | 133.822519 | (2, 208248388) |
1 | 0.543616 | 520 | 122.076336 | (17, 7673803) |
2 | 0.865149 | 519 | 133.375954 | (2, 208248389) |
3 | 0.991546 | 448 | 38.312977 | (14, 32092134) |
4 | 0.951786 | 519 | 133.375954 | (2, 208248389) |
import matplotlib.pyplot as plt
fig,ax=plt.subplots(figsize=(4,3))
praucDf['auprc'].hist(ax=ax)
#ax.set_yticklabels([])
ax.grid(False)
ax.set_yticklabels([])
ax.set_ylabel('# of samples')
ax.set_xlabel('AUPRC')
Text(0.5,0,'AUPRC')
praucS=pd.Series(roc_auc_l).dropna()
(praucS>0.8).mean()
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-189-913ac00a7691> in <module>() 1 praucS=pd.Series(roc_auc_l).dropna() ----> 2 (praucS>0.8).mean() ~/anaconda3/lib/python3.6/site-packages/pandas/core/ops.py in wrapper(self, other, axis) 1251 1252 with np.errstate(all='ignore'): -> 1253 res = na_op(values, other) 1254 if is_scalar(res): 1255 raise TypeError('Could not compare {typ} type with Series' ~/anaconda3/lib/python3.6/site-packages/pandas/core/ops.py in na_op(x, y) 1138 1139 elif is_object_dtype(x.dtype): -> 1140 result = _comp_method_OBJECT_ARRAY(op, x, y) 1141 1142 elif is_datetimelike_v_numeric(x, y): ~/anaconda3/lib/python3.6/site-packages/pandas/core/ops.py in _comp_method_OBJECT_ARRAY(op, x, y) 1117 result = libops.vec_compare(x, y, op) 1118 else: -> 1119 result = libops.scalar_compare(x, y, op) 1120 return result 1121 pandas/_libs/ops.pyx in pandas._libs.ops.scalar_compare() TypeError: '>' not supported between instances of 'dict' and 'float'
ax=pd.Series(roc_auc_l).hist(normed=True)
ax
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/matplotlib/axes/_axes.py:6462: UserWarning: The 'normed' kwarg is deprecated, and has been replaced by the 'density' kwarg. warnings.warn("The 'normed' kwarg is deprecated, and has been "
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-182-d7534bb7361c> in <module>() ----> 1 ax=pd.Series(roc_auc_l).hist(normed=True) 2 ax ~/anaconda3/lib/python3.6/site-packages/pandas/plotting/_core.py in hist_series(self, by, ax, grid, xlabelsize, xrot, ylabelsize, yrot, figsize, bins, **kwds) 2479 values = self.dropna().values 2480 -> 2481 ax.hist(values, bins=bins, **kwds) 2482 ax.grid(grid) 2483 axes = np.array([ax]) ~/anaconda3/lib/python3.6/site-packages/matplotlib/__init__.py in inner(ax, *args, **kwargs) 1853 "the Matplotlib list!)" % (label_namer, func.__name__), 1854 RuntimeWarning, stacklevel=2) -> 1855 return func(ax, *args, **kwargs) 1856 1857 inner.__doc__ = _add_data_doc(inner.__doc__, ~/anaconda3/lib/python3.6/site-packages/matplotlib/axes/_axes.py in hist(***failed resolving arguments***) 6512 for xi in x: 6513 if len(xi) > 0: -> 6514 xmin = min(xmin, xi.min()) 6515 xmax = max(xmax, xi.max()) 6516 bin_range = (xmin, xmax) TypeError: '<' not supported between instances of 'dict' and 'float'
wxsWithDataDf_base.head()
rna-seq | wxs | ||||||
---|---|---|---|---|---|---|---|
features | ReadDepth | AverageBaseQuality | ReadDepth | AverageBaseQuality | |||
sample_barcode | Chr | Pos | base |
threshold=2
selectedBase='T'
query_chromosome, qeury_corrdinate='2',208248388
m_chr=targetted_df.index.get_level_values('Chr')==query_chromosome
Pos_array=targetted_df.index.get_level_values('Pos')
window_size=0
m_pos=(Pos_array>=(qeury_corrdinate-window_size))&(Pos_array<=(qeury_corrdinate+window_size))
m_qual=targetted_df['AverageBaseQuality']>=30
targetted_df_sub=targetted_df[m_pos&m_qual]
index_metaDf=targetted_df_sub.index.to_frame()
index_metaDf['sample_barcode']=manifest_df_w_RNA_WXS.set_index('file_id').loc[index_metaDf['Run_digits']]['sample_barcode'].values
multI=index_metaDf.set_index(['sample_barcode','Run_digits','Chr','Pos','base']).index
targetted_df_sub.index=multI
rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='RNA-Seq']['file_id'].unique()
m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(rnaseq_uuids)
rnaseq_df=targetted_df_sub[m_uuid]
groupings_L=['sample_barcode','Chr','Pos','base']
rnaseq_df=rnaseq_df.groupby(groupings_L).first()
wxs_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='WXS']['file_id'].unique()
m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(wxs_uuids)
wxs_df=targetted_df_sub[m_uuid]
wxs_df=wxs_df.groupby(groupings_L).first()
mergedDf=pd.concat([ rnaseq_df,wxs_df],axis=1,keys=['rna-seq','wxs'])
mergedDf['wxs']['ReadDepth']=mergedDf['wxs']['ReadDepth'].fillna(0)
#mergedDf
#for the whole
from sklearn import metrics
#### get the homozygous
wxsWithDataDf=mergedDf#[mergedDf['wxs']['ReadDepth']>=threshold]
sampleRdS=wxsWithDataDf['wxs'].groupby('sample_barcode')['ReadDepth'].sum()
xwsSamplesWithCoverage=sampleRdS.index[sampleRdS>threshold]
m_base=wxsWithDataDf.index.get_level_values('base')==selectedBase
m_wxs_coverage=wxsWithDataDf.index.get_level_values('sample_barcode').isin(xwsSamplesWithCoverage)
m_valid_all=mergedDf.notnull().all(axis=1)
wxsWithDataDf_base=wxsWithDataDf[m_base&m_wxs_coverage]
wxsWithDataDf_base['rna-seq']=wxsWithDataDf_base['rna-seq'].fillna(0)
#wxsWithDataDf_base['rna-seq']['ReadDepth'].hist()
#wxsWithDataDf_base['wxs']['ReadDepth'].hist()
y_true=wxsWithDataDf_base['wxs']['ReadDepth']>=threshold
precision,recall,_=metrics.precision_recall_curve(y_true,
wxsWithDataDf_base['rna-seq']['ReadDepth'].fillna(0))
auprc=metrics.auc(recall,precision)
#group=wxsWithDataDf.groupby('base')
#for base, df in group:
# break
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:13: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike del sys.path[0] /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:35: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy /cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:62: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
index_metaDf=targetted_df_sub.index.to_frame()
index_metaDf['sample_barcode']=manifest_df_w_RNA_WXS.set_index('file_id').loc[index_metaDf['Run_digits']]['sample_barcode'].values
multI=index_metaDf.set_index(['sample_barcode','Run_digits','Chr','Pos','base']).index
targetted_df_sub.index=multI
wxs_df=targetted_df_sub[m_uuid]#.loc[wxs_uuid]
/cellar/users/btsui/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:3: FutureWarning: Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative. See the documentation here: https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike This is separate from the ipykernel package so we can avoid doing imports until
%time wxs_df=wxs_df.groupby(groupings_L).first()
CPU times: user 72 ms, sys: 32 ms, total: 104 ms Wall time: 102 ms
rnaseq_uuids=manifest_df_w_RNA_WXS[manifest_df_w_RNA_WXS['experimental_strategy']=='RNA-Seq']['file_id'].unique()
m_uuid=targetted_df_sub.index.get_level_values('Run_digits').isin(rnaseq_uuids)
rnaseq_df=targetted_df_sub[m_uuid]#.loc[rnaseq_uuid]
%time rnaseq_df=rnaseq_df.groupby(groupings_L).first()
CPU times: user 24 ms, sys: 0 ns, total: 24 ms Wall time: 28.5 ms
mergedDf=pd.concat([ rnaseq_df,wxs_df],axis=1,keys=['rna-seq','wxs'])
mergedDf=mergedDf[~mergedDf.isnull().all(axis=1)]
#ref C
IDH1_corrdinate=208248388
mergedDf_subDf=mergedDf[mergedDf.index.get_level_values('Pos')==IDH1_corrdinate]
m_quality=(mergedDf_subDf['wxs']['AverageBaseQuality']>20)
ref_alt='T'
m_alt=(mergedDf_subDf.index.get_level_values('base'))==ref_alt
qualFilteredDf=mergedDf_subDf[m_quality]
unstackDf=qualFilteredDf.unstack()
unstackDf.head()
rna-seq | wxs | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
features | ReadDepth | AverageBaseQuality | ReadDepth | AverageBaseQuality | ||||||||||||||
base | A | C | G | T | A | C | G | T | A | C | G | T | A | C | G | T | ||
sample_barcode | Chr | Pos | ||||||||||||||||
TCGA-CS-4938-01B | 2 | 208248388 | NaN | 68.0 | NaN | 24.0 | NaN | 37.0 | NaN | 38.0 | NaN | 87.0 | NaN | 29.0 | NaN | 29.0 | NaN | 29.0 |
TCGA-CS-4941-01A | 2 | 208248388 | NaN | 235.0 | NaN | NaN | NaN | 37.0 | NaN | NaN | NaN | 182.0 | NaN | NaN | NaN | 27.0 | NaN | NaN |
TCGA-CS-4942-01A | 2 | 208248388 | NaN | 140.0 | NaN | 19.0 | NaN | 38.0 | NaN | 38.0 | NaN | 192.0 | NaN | 46.0 | NaN | 25.0 | NaN | 28.0 |
TCGA-CS-4944-01A | 2 | 208248388 | NaN | 43.0 | NaN | 17.0 | NaN | 37.0 | NaN | 37.0 | NaN | 149.0 | NaN | 43.0 | NaN | 27.0 | NaN | 28.0 |
TCGA-CS-5390-01A | 2 | 208248388 | NaN | 95.0 | NaN | 32.0 | NaN | 37.0 | NaN | 38.0 | NaN | 141.0 | NaN | 51.0 | NaN | 26.0 | NaN | 27.0 |
from sklearn import metrics
import matplotlib.pyplot as plt
fig,ax=plt.subplots(figsize=(5,3))
unstackDf[('wxs','ReadDepth','T')].fillna(0).hist(bins=30,label='Minor alle',ax=ax)
unstackDf[('wxs','ReadDepth','C')].fillna(0).hist(bins=30,ax=ax,
label='Reference allele')
ax.axvline(x=10,c='red')
ax.set_ylabel('# of tumor samples')
ax.legend()
ax.set_xlabel('Allelic read counts')
ax.grid(False)
(unstackDf[('wxs','ReadDepth','T')]>0).sum()
351
asdasdas
--------------------------------------------------------------------------- NameError Traceback (most recent call last) <ipython-input-41-61aacb46f36f> in <module>() ----> 1 asdasdas NameError: name 'asdasdas' is not defined
y_true=(>10)
y_true.value_counts()
print ('ROC AUC',metrics.roc_auc_score(y_true,
unstackDf[('rna-seq','ReadDepth','T')].fillna(0)))
precision, recall, thresholds=metrics.precision_recall_curve(y_true,
unstackDf[('rna-seq','ReadDepth','T')].fillna(0))
ax=pd.DataFrame({'precision':precision,'recall':recall}).plot(x='recall',y='precision')
ax.set_ylabel('Precision')
ax.set_xlabel('Recall')
metrics.auc(recall,precision)
ax.set_title('IDH1 C>T mutation using RNAseq')
import seaborn as sns
qualFilteredDf[('wxs','ReadDepth')].index.get_level_values('base').value_counts()
qualFilteredDf[('rna-seq','ReadDepth')].index.get_level_values('base').value_counts()
qualFilteredDf[('rna-seq','ReadDepth')].index.get_level_values('base').value_counts()
mergedDf_subDf
qualFilteredDf['ReadDepth'],qualFilteredDf['wxs']>3
##c
#qualFilteredDf[]
unstackDf=qualFilteredDf['wxs'].unstack()['ReadDepth']
#qualFilteredDf['wxs'].unstack()['ReadDepth']
sns.jointplot(data=qualFilteredDf[qualFilteredDf.index.get_level_values('base')=='T'],x=('rna-seq','ReadDepth'),y=('wxs','ReadDepth'))
#categorical_crossentropy
### generate the correlation between the data