This notebook is part of biokit
heatmap with dendograms: heatmap
%pylab inline
from biokit.viz import Heatmap
from biokit.viz.heatmap import get_heatmap_df
Populating the interactive namespace from numpy and matplotlib
df = get_heatmap_df() # this is a simple test example
h = Heatmap(df)
layout = h.plot()
import pandas as pd
df = pd.DataFrame(numpy.random.randn(40,40))
df[0] += 5
df[10] +=10
df[20] +=5
df.ix[5] += 5
df.ix[15] +=5
df.ix[25] +=5
h.df = df.copy()
layout = h.plot(cmap="RdGy",vmin=-5, vmax=10)
/home/cokelaer/miniconda3/envs/py3/lib/python3.5/site-packages/ipykernel_launcher.py:6: DeprecationWarning: .ix is deprecated. Please use .loc for label based indexing or .iloc for positional indexing See the documentation here: http://pandas.pydata.org/pandas-docs/stable/indexing.html#ix-indexer-is-deprecated