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..
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Media
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expected_outputs
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inputs
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outputs
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01.00-How-to-Get-Started.ipynb
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01.01-PyRosetta-Google-Drive-Setup.ipynb
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01.02-PyRosetta-Google-Drive-Usage-Example.ipynb
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01.03-How-to-Get-Local-PyRosetta.ipynb
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02.00-Introduction-to-PyRosetta.ipynb
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02.01-Pose-Basics.ipynb
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02.02-Working-with-Pose-Residues.ipynb
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02.03-Accessing-PyRosetta-Documentation.ipynb
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02.04-Getting-Spatial-Features-from-Pose.ipynb
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02.05-Protein-Geometry.ipynb
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02.06-Visualization-and-PyMOL-Mover.ipynb
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02.07-RosettaScripts-in-PyRosetta.ipynb
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02.08-Visualization-and-pyrosetta.distributed.viewer.ipynb
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03.00-Rosetta-Energy-Score-Functions.ipynb
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03.01-Score-Function-Basics.ipynb
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03.02-Analyzing-energy-between-residues.ipynb
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03.03-Energies-and-the-PyMOLMover.ipynb
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04.00-Introduction-to-Folding.ipynb
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04.01-Basic-Folding-Algorithm.ipynb
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04.02-Low-Res-Scoring-and-Fragments.ipynb
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05.00-Structure-Refinement.ipynb
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05.01-High-Res-Movers.ipynb
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05.02-Refinement-Protocol.ipynb
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06.00-Introduction-to-Packing-and-Design.ipynb
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06.01-Side-Chain-Conformations-and-Dunbrack-Energies.ipynb
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06.02-Packing-design-and-regional-relax.ipynb
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06.03-Design-with-a-resfile-and-relax.ipynb
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06.04-Protein-Design-2.ipynb
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06.05-HBNet-Before-Design.ipynb
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06.06-Introduction-to-Parametric-backbone-design.ipynb
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06.07-Introduction-to-DeNovo-protein-design.ipynb
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07.00-Docking.ipynb
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07.01-Fast-Fourier-Transform-Based-Docking-via-ZDOCK.ipynb
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07.02-Docking-Moves-in-Rosetta.ipynb
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07.03-Ligand-Docking-PyRosetta.ipynb
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07.04-Ligand-Docking-XMLObjects.ipynb
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07.05-Ligand-Docking-pyrosetta.distributed.ipynb
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09.00-Working-With-Symmetry.ipynb
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10.00-Working-With-Density.ipynb
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11.00-Working-With-Antibodies.ipynb
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11.01-RosettaAntibody-Framework-and-SimpleMetrics.ipynb
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11.02-RosettaAntibodyDesign-RAbD.ipynb
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12.00-RosettaCarbohydrates-Working-with-Glycans.ipynb
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12.01-Glycan-Trees-Selectors-and-Movers.ipynb
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12.02-Glycan-Modeling-and-Design.ipynb
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13.00-RNA-Basics.ipynb
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14.00-Modeling-Membrane-Proteins.ipynb
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14.01-Accounting-for-the-lipid-bilayer.ipynb
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15.00-Running-PyRosetta-in-Parellel.ipynb
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15.01-PyData-ddG-pssm.ipynb
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15.02-PyData-miniprotein-design.ipynb
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15.03-GNU-Parallel-Via-Slurm.ipynb
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15.04-dask.delayed-Via-Slurm.ipynb
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15.05-Ligand-Docking-dask.ipynb
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index.ipynb
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toc.ipynb
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environment.yml
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index.md
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toc.md
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