This notebook contains material from PyRosetta; content is available on Github.

Docking Moves in Rosetta

Keywords: SwitchResidueTypeMover(), fold_tree(), Jump, EDGE, RigidBodyPerturbMover(), DockingSlideIntoContact(), FaDockingSlideIntoContact(), PyJobDistributor(), output_decoy(), DockMCMProtocol(), DockingLowRes(), ReturnSidechainMover()

Overview

Here, we will cover many types of Movers in Rosetta that can aid in docking, and cover the FoldTree used for docking. Note that the DockMCMProtocol is the general high-resolution docking algorithm used by Rosetta, while DockingLowRes is used for low-resolution dock moves.

In [ ]:
# Notebook setup
import os
import sys
if 'google.colab' in sys.modules:
    !pip install pyrosettacolabsetup
    import pyrosettacolabsetup
    pyrosettacolabsetup.mount_pyrosetta_install()
    print ("Notebook is set for PyRosetta use in Colab.  Have fun!")

Make sure you are in the directory with the pdb files:

cd google_drive/My\ Drive/student-notebooks/

For the following exercises, download and clean the complex of colicin D and ImmD (1V74). Don't forget to import pyrosetta and initialize. Store three poses — a full-atom starting pose and centroid and full-atom “working” poses.

from pyrosetta import *
from pyrosetta.teaching import *
from pyrosetta.toolbox import cleanATOM

pyrosetta.init()
cleanATOM("1V74.pdb")
pose = pose_from_file("1V74.clean.pdb")
starting_pose = pose.clone()
cen_pose = pose.clone()
cen_switch = SwitchResidueTypeSetMover("centroid")
cen_switch.apply(cen_pose)
starting_cen_pose = cen_pose.clone()
In [1]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    from pyrosetta import *
    from pyrosetta.teaching import *
    from pyrosetta.toolbox import cleanATOM

    pyrosetta.init()
    from pyrosetta.toolbox import pose_from_rcsb
    pose = pose_from_rcsb("1V74")
    starting_pose = pose.clone()
    cen_pose = pose.clone()
    cen_switch = SwitchResidueTypeSetMover("centroid")
    cen_switch.apply(cen_pose)
    starting_cen_pose = cen_pose.clone()
    ### END SOLUTION
core.init: Checking for fconfig files in pwd and ./rosetta/flags
core.init: Rosetta version: PyRosetta4.Release.python36.mac r208 2019.04+release.fd666910a5e fd666910a5edac957383b32b3b4c9d10020f34c1 http://www.pyrosetta.org 2019-01-22T15:55:37
core.init: command: PyRosetta -ex1 -ex2aro -database /Users/kathyle/Computational Protein Prediction and Design/PyRosetta4.Release.python36.mac.release-208/pyrosetta/database
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=153200670 seed_offset=0 real_seed=153200670
core.init.random: RandomGenerator:init: Normal mode, seed=153200670 RG_type=mt19937
/Users/kathyle/Computational Protein Prediction and Design/PyRosetta4.Release.python36.mac.release-208/pyrosetta/teaching.py:13: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.
  from rosetta.core.scoring import *
core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set.  Created 696 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 1.14031 seconds.
core.import_pose.import_pose: File '1V74.clean.pdb' automatically determined to be of type PDB
core.conformation.Conformation: [ WARNING ] missing heavyatom:  OXT on residue LEU:CtermProteinFull 107
core.conformation.Conformation: [ WARNING ] missing heavyatom:  OXT on residue LEU:CtermProteinFull 194
core.chemical.GlobalResidueTypeSet: Finished initializing centroid residue type set.  Created 62 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 0.0535 seconds.

Rigid-body transformations and Fold Trees

The fundamental docking move is a rigid-body transformation consisting of a translation and rotation. Any rigid body move also needs to know which part moves and which part is fixed. In Rosetta, this division is known as a Jump and the set of protein segments and jumps are stored in an object attached to a pose called a FoldTree.

print(pose.fold_tree())
In [2]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    print(pose.fold_tree())
    ### END SOLUTION
FOLD_TREE  EDGE 1 107 -1  EDGE 1 108 1  EDGE 108 194 -1 

In the FoldTree printout, each three number sequence following the word EDGE is the beginning and ending residue number, then a code. The codes are -1 for stretches of protein and any positive integer for a Jump, which represents the Jump number.

Question: View the fold tree of your full-atom pose. How many Jumps are there in your pose?

In [3]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    print(starting_pose.fold_tree())
    print("There's 1 Jump!")
    ### END SOLUTION
FOLD_TREE  EDGE 1 107 -1  EDGE 1 108 1  EDGE 108 194 -1 
There's 1 Jump!

By default, there is a Jump between the N-terminus of chain A and the N-terminus of chain B, but we can change this using the exposed method setup_foldtree().

from pyrosetta.rosetta.protocols.docking import setup_foldtree
print(pose.fold_tree())
setup_foldtree(pose, "A_B", Vector1([1]))
setup_foldtree(starting_pose, "A_B", Vector1([1]))
print(pose.fold_tree())
In [4]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUITON
    from pyrosetta.rosetta.protocols.docking import setup_foldtree
    print(pose.fold_tree())
    setup_foldtree(pose, "A_B", Vector1([1]))
    setup_foldtree(starting_pose, "A_B", Vector1([1]))
    print(pose.fold_tree())
    ### END SOLUTION
FOLD_TREE  EDGE 1 107 -1  EDGE 1 108 1  EDGE 108 194 -1 
FOLD_TREE  EDGE 1 88 -1  EDGE 88 107 -1  EDGE 88 158 1  EDGE 158 108 -1  EDGE 158 194 -1 

The argument "A_B" tells Rosetta to make chain A the “rigid” chain and allow chain B to move. If there were more chains in the pdb structure, supplying "AB_C" would hold chains A and B rigid together as a single unit and allow chain C to move. (The third argument Vector1([1]) is required, it creates a Rosetta vector object — indexed from 1 — with one element that identifies the first Jump in the FoldTree for docking use.)

Question: The above command changed the FoldTree and prepared it for docking. What has changed?

In [5]:
### BEGIN SOLUTION
print("We changed the Jump that was connecting the N-termini of A and B into a Jump that connects the centers of A and B.")
### END SOLUTION
We changed the Jump that was connecting the N-termini of A and B into a Jump that connects the centers of A and B.

You can see the type of information in the Jump by printing it from the pose:

jump_num = 1
print(pose.jump(jump_num).get_rotation())    # rotation matrix
print(pose.jump(jump_num).get_translation())    # translation vector
In [6]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    jump_num = 1
    print(pose.jump(jump_num).get_rotation())
    print('\n')
    print(pose.jump(jump_num).get_translation())
    ### END SOLUTION
    -0.7685217364647527     -0.5410492486350577     -0.3415260621572572
    -0.4152200273442840      0.8278586413578777     -0.3771503663279437
     0.4867922241299832     -0.1480397935709470     -0.8608818444165606



     -2.528204534753801      -11.32734702901771      -11.01155062262599

RigidBody Movers

The two basic manipulations are translations and rotations. For translation, the change in x, y, and z coordinates are needed as well as the Jump number. A rotation requires a center and an axis about which to rotate. The rigid-body displacement can be altered directly with the RigidBodyTransMover for translations or the RigidBodySpinMover for rotations.

However, for structure prediction calculations, we have a Mover that is preconfigured to make random movements varying around set magnitudes (in this case, a mean of 8° rotation and 3 Å translation) located in the rosetta.protocols.rigid namespace, (which we will rename with an alias rigid_moves for our convenience) :

import pyrosetta.rosetta.protocols.rigid as rigid_moves
pert_mover = rigid_moves.RigidBodyPerturbMover(jump_num, 8, 3)
In [7]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    import pyrosetta.rosetta.protocols.rigid as rigid_moves
    pert_mover = rigid_moves.RigidBodyPerturbMover(jump_num, 8, 3)
    ### END SOLUTION

Apply the RigidBodyPerturbMover to a full-atom pose and (optional) use a PyMOLMover to confirm that the motions are what you expect.

Question: What are the new rotation matrix and translation vector in the Jump? How many ångströms did the downstream protein move?

In [8]:
if not os.getenv("DEBUG"):
    from pyrosetta import PyMOLMover
    pymol = PyMOLMover()
    pymol.apply(pose)
In [9]:
if not os.getenv("DEBUG"):
    pert_mover.apply(pose)
    pymol.apply(pose)

Global perturbations are useful for making completely randomized starting structures. The following Mover will rotate a protein about its geometric center. The final orientation is equally distributed over the “globe”.

randomize1 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_upstream)
randomize2 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_downstream)

(partner_upstream and partner_downstream are predefined terms within the pyrosetta.rosetta.protocols.rigid namespace, which in our case refer to chains A and B, respectively.)

In [10]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    randomize1 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_upstream)
    randomize2 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_downstream)
    ### END SOLUTION

Apply both Movers to the starting structure, and view the structure in PyMOL. (You might view it along with the original pose).

Question: Does the new conformation look like a candidate docked structure yet?

In [11]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    randomize1.apply(pose)
    pymol.apply(pose)
    ### END SOLUTION
protocols.moves.RigidBodyMover: Randomize: Jump (before): RT -0.8017 -0.397394 -0.446492 -0.293156 0.912386 -0.285679 0.5209 -0.0981368 -0.847958 -1.19562 -9.50292 -10.0634
protocols.moves.RigidBodyMover: Randomize: Rot. Center (before): 8.41166 24.8844 13.8747
protocols.geometry.RB_geometry: random_reorientation_matrix phi: 280.753 psi: 213.745 theta: 89.5942
protocols.moves.RigidBodyMover: Randomize: Jump (after):  RT 0.5261 0.058095 0.848436 -0.718198 -0.503923 0.479847 0.455423 -0.861793 -0.22339 9.54417 14.2708 5.28185
protocols.moves.RigidBodyMover: Randomize: Rot. Center (after):  8.41166 24.8844 13.8747
protocols.moves.RigidBodyMover: Randomize: ---
In [12]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    randomize2.apply(pose)
    pymol.apply(pose)
    ### END SOLUTION
protocols.moves.RigidBodyMover: Randomize: Jump (before): RT 0.5261 0.058095 0.848436 -0.718198 -0.503923 0.479847 0.455423 -0.861793 -0.22339 9.54417 14.2708 5.28185
protocols.moves.RigidBodyMover: Randomize: Rot. Center (before): 1.25081 38.8476 19.6277
protocols.geometry.RB_geometry: random_reorientation_matrix phi: 202.435 psi: 88.5137 theta: 148.329
protocols.moves.RigidBodyMover: Randomize: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -11.0351 -41.2595 -1.95751
protocols.moves.RigidBodyMover: Randomize: Rot. Center (after):  -19.0115 44.0928 43.7983
protocols.moves.RigidBodyMover: Randomize: ---

Since proteins are not spherical, sometimes the random orientation creates severe clashes between the docking partners, and other times it places the partners so they are no longer touching. The FaDockingSlideIntoContact Mover will translate the downstream protein along the line of protein centers until the proteins are in contact.

slide = DockingSlideIntoContact(jump_num)  # for centroid mode
slide = FaDockingSlideIntoContact(jump_num)  # for full-atom mode
slide.apply(pose)
In [13]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    slide = DockingSlideIntoContact(jump_num)  # for centroid mode
    slide = FaDockingSlideIntoContact(jump_num)  # for full-atom mode
    slide.apply(pose)
    pymol.apply(pose)
    ### END SOLUTION
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt
basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -11.0351 -41.2595 -1.95751
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.6909 -39.2965 -1.789
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.6909 -39.2965 -1.789
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.0024 -35.3707 -1.45197
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.0024 -35.3707 -1.45197
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.1745 -36.3521 -1.53623
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.1745 -36.3521 -1.53623
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.2606 -36.8429 -1.57836
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.2606 -36.8429 -1.57836
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3036 -37.0882 -1.59942
protocols.moves.RigidBodyMover: Translate: Jump (before): RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3036 -37.0882 -1.59942
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT 0.929445 -0.157576 -0.333618 0.0159138 0.920492 -0.390436 0.368617 0.35758 0.858055 -10.3466 -37.3336 -1.62049

The MinMover, which we have previously used to change torsion angles to find the nearest minimum in the score function, can also operate on the jump translation and rotation. It suffices to set the Jump variable as moveable in the MoveMap:

movemap = MoveMap()
movemap.set_jump(jump_num, True)
min_mover = MinMover()
min_mover.movemap(movemap)
scorefxn = get_fa_scorefxn()
min_mover.score_function(scorefxn)
In [14]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    movemap = MoveMap()
    movemap.set_jump(jump_num, True)
    min_mover = MinMover()
    min_mover.movemap(movemap)
    scorefxn = get_fa_scorefxn()
    min_mover.score_function(scorefxn)
    ### END SOLUTION
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv
basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb
basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated.
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop

Apply the above MinMover to the working pose

scorefxn(pose)
min_mover.apply(pose)
print(pose.jump(jump_num).get_rotation())
print(pose.jump(jump_num).get_translation())

Question: How much does the score change? What are the new rotation matrix and translation vector in the Jump? How many Ångstroms did the downstream protein move?

In [15]:
#Skip for tests
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    scorefxn(pose)

    min_mover.apply(pose)

    print(pose.jump(jump_num).get_rotation())
    print(pose.jump(jump_num).get_translation())
    ### END SOLUTION
basic.io.database: Database file opened: scoring/score_functions/elec_cp_reps.dat
core.scoring.elec.util: Read 40 countpair representative atoms
core.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true.
core.pack.dunbrack.RotamerLibrary: shapovalov_lib::shap_dun10_smooth_level of 1( aka lowest_smooth ) got activated.
core.pack.dunbrack.RotamerLibrary: Binary rotamer library selected: /Users/kathyle/Computational Protein Prediction and Design/PyRosetta4.Release.python36.mac.release-208/pyrosetta/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin
core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/Users/kathyle/Computational Protein Prediction and Design/PyRosetta4.Release.python36.mac.release-208/pyrosetta/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin'.
core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.453838 seconds to load from binary
     0.9274324116146171     -0.1588438511942681     -0.3385819735669223
    0.02530081134139125      0.9298956510365534     -0.3669522409371191
     0.3731340118940731      0.3317570031228866      0.8664342445025811

     -10.41040820955571      -37.11370093489805     -0.8393506277951737

Low-Resolution Docking via RosettaDock

RosettaDock can also perform global docking runs, but it can require significant time. Typically, $10^{5}$ - $10^{6}$ decoys are needed in a global run. For this workshop, we will create a much smaller number and learn the tools needed to handle large runs.

Docking is available as a mover that completely encompasses the protocol. To use the Mover, you will need a starting pose with both chains and a jump defined. The structure must be in low-resolution (centroid) mode, and you will need the low-resolution docking score function:

scorefxn_low = create_score_function("interchain_cen")
In [16]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    scorefxn_low = create_score_function("interchain_cen")
    ### END SOLUTION

Randomize your centroid version of the complex. Then, create low-resolution docking structures as follows:

dock_lowres = DockingLowRes(scorefxn_low, jump_num)
print(cen_pose.fold_tree())
setup_foldtree(cen_pose, "A_B", Vector1([1]))
print(cen_pose.fold_tree())
dock_lowres.apply(cen_pose)
In [17]:
#Skip for tests
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    dock_lowres = DockingLowRes(scorefxn_low, jump_num)
    print(cen_pose.fold_tree())
    setup_foldtree(cen_pose, "A_B", Vector1([1]))
    print(cen_pose.fold_tree())

    dock_lowres.apply(cen_pose)
    ### END SOLUTION
FOLD_TREE  EDGE 1 107 -1  EDGE 1 108 1  EDGE 108 194 -1 
FOLD_TREE  EDGE 1 88 -1  EDGE 88 107 -1  EDGE 88 158 1  EDGE 158 108 -1  EDGE 158 194 -1 
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.2
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.16

You can compare structures by calculating the root-mean-squared deviation of all the Cα atoms, using the function CA_rmsd(pose1, pose2). In docking, a more useful measure is the ligand RMSD, which is the deviation of the backbone Cα atoms of the ligand after superposition of the receptor protein backbones. You can calculate ligand RMSD with calc_Lrmsd(pose1, pose2, Vector1([1])).

print(CA_rmsd(cen_pose, starting_cen_pose))
print(calc_Lrmsd(cen_pose, starting_cen_pose, Vector1([1])))

Question: Using both measures, how far did your pose move from the low-resolution search?

In [18]:
if not os.getenv("DEBUG"):
    print(CA_rmsd(cen_pose, starting_cen_pose))
    print(calc_Lrmsd(cen_pose, starting_cen_pose, Vector1([1])))
1.6128009557724
3.059707088138466

Examine the created decoys in PyMOL directly.

pymol.keep_history(True)
pymol.apply(cen_pose)
pymol.apply(pose)

OR dump the pdbs to view in PyMOL.

cen_pose.dump_pdb("cen_pose.pdb")
pose.dump_pdb("pose.pdb")
In [ ]:
 

Question: Does it look like a reasonable structure for a protein-protein complex? Explain.

In [ ]:
 

Job Distributor

For exhaustive searches with Rosetta (docking, refinement, or folding), it is necessary to create a large number of candidate structures, termed “decoys”. This is often accomplished by spreading out the work over a large number of computers. Additionally, each decoy created needs to be individually labeled. The object that is responsible for managing the output is called a PyJobDistributor. Here, we will use a simple job distributor to create multiple structures. The following constructor sets the job distributor to create 10 decoys, with filenames like output_1.pdb, output_2.pdb, etc. The pdb files will also include scores according to the ScoreFunction provided.

jd = PyJobDistributor("output", 10, scorefxn_low)
In [20]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    jd = PyJobDistributor("output", 10, scorefxn_low)
    ### END SOLUTION
Working on decoy: output_9.pdb

It is also useful to compare each decoy to the native structure (if it is known; otherwise any reference structure can be used). The job distributor will do the RMSD calculation and final scoring upon output. To set the native pose:

# your starting_cen_pose should be the native crystal structure
jd.native_pose = starting_cen_pose
In [21]:
if not os.getenv("DEBUG"):
    # your starting_cen_pose should be the native crystal structure
    ### BEGIN SOLUTION
    jd.native_pose = starting_cen_pose
    ### END SOLUTION

Create a randomized starting pose, working pose, fold tree, score function, job distributor, and low-resolution docking mover. Now, run the low-resolution docking protocol to create a structure, and output a decoy:

cen_pose.assign(starting_cen_pose)
dock_lowres.apply(cen_pose)
jd.output_decoy(cen_pose)

Do this twice and confirm that you have two output files in your working directory.

In [22]:
#Skip for tests
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    cen_pose.assign(starting_cen_pose)

    dock_lowres.apply(cen_pose)

    jd.output_decoy(cen_pose)
    ### END SOLUTION
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
Working on decoy: output_1.pdb

Whenever the output_decoy() method is called, the current_num variable of the PyJobDistributor is incremented, and it also outputs an updated score file: output.fasc. We can finish the set of 10 decoys by using the PyJobDistributor to set up a loop:

while not jd.job_complete:
    cen_pose.assign(starting_cen_pose)
    dock_lowres.apply(cen_pose)
    jd.output_decoy(cen_pose)

Note the jd.job_complete Boolean variable that indicates whether all 10 decoys have been created.

In [23]:
#Skip for tests
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    while not jd.job_complete:
        cen_pose.assign(starting_cen_pose)

        dock_lowres.apply(cen_pose)

        jd.output_decoy(cen_pose)
    ### END SOLUTION
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
Working on decoy: output_5.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
Working on decoy: output_4.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
Working on decoy: output_3.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.16
Working on decoy: output_7.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.16
Working on decoy: output_0.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.16
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
Working on decoy: output_6.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
Working on decoy: output_8.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.16
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
Working on decoy: output_2.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02

Run the loop to create 10 structures. The score file, output.fasc summarizes the energies and RMSDs of all structures created.

Question: Examine that file. What is the lowest score? What is the lowest energy?

In [ ]:
 

Reset the PyJobDistributor to create 100 decoys (or more or less, as the speed of your processor allows) by reconstructing it. Rerun the loop above to make 100 decoys. Use your score file to plot score versus RMSD. (Two easy ways to do this are to import the score file into Excel or to use the Linux command gnuplot.)

jd = PyJobDistributor("output", 100, scorefxn_low)
while not jd.job_complete:
    cen_pose.assign(starting_cen_pose)
    dock_lowres.apply(cen_pose)
    jd.output_decoy(cen_pose)

Question: Do you see an energy funnel?

In [24]:
#Skip for tests
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    jd = PyJobDistributor("output", 100, scorefxn_low)
    while not jd.job_complete:
        cen_pose.assign(starting_cen_pose)

        dock_lowres.apply(cen_pose)

        jd.output_decoy(cen_pose)
    ### END SOLUTION
Working on decoy: output_68.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.16
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.18
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
Working on decoy: output_32.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.18
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.2
Working on decoy: output_36.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
Working on decoy: output_45.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Acceptance rate is: 0.18
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.24
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
Working on decoy: output_26.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.12
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.02
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.14
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.24
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.26
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.2
Working on decoy: output_60.pdb
protocols.docking.DockingLowRes: in DockingLowRes.apply
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ///                       Docking Low Res Protocol                           ///
protocols.docking.DockingLowRes: ///                                                                          ///
protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50                                                ///
protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10                                                ///
protocols.docking.DockingLowRes: /// Scorefunction:                                                           ///
protocols.docking.DockingLowRes: ScoreFunction::show():
weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2)
energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
analytic_etable_evaluation: 1
EnergyMethodOptions::show: method_weights: free_res
EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM
protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ
protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4
protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat
protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true
protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false
protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221
protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic"
protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true
protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false
protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false
protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true
protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true
protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true
protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params
protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true
protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75
protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357
protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true
protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1
protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0
protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false
protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false
protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0
protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson
protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1
protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25
protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: 
protocols.docking.DockingLowRes: ////////////////////////////////////////////////////////////////////////////////
protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive:::::::::::::::::::
protocols.docking.DockingLowRes: Translation magnitude: 0.7
protocols.docking.DockingLowRes: Rotation magnitude: 5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.63
protocols.docking.DockingLowRes: Rotation magnitude: 4.5
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.567
protocols.docking.DockingLowRes: Rotation magnitude: 4.05
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.08
protocols.docking.DockingLowRes: Translation magnitude: 0.5103
protocols.docking.DockingLowRes: Rotation magnitude: 3.645
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.45927
protocols.docking.DockingLowRes: Rotation magnitude: 3.2805
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.413343
protocols.docking.DockingLowRes: Rotation magnitude: 2.95245
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.06
protocols.docking.DockingLowRes: Translation magnitude: 0.372009
protocols.docking.DockingLowRes: Rotation magnitude: 2.65721
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
protocols.docking.DockingLowRes: Translation magnitude: 0.334808
protocols.docking.DockingLowRes: Rotation magnitude: 2.39148
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.1
protocols.docking.DockingLowRes: Translation magnitude: 0.301327
protocols.docking.DockingLowRes: Rotation magnitude: 2.15234
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0
protocols.docking.DockingLowRes: Translation magnitude: 0.271194
protocols.docking.DockingLowRes: Rotation magnitude: 1.9371
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected
protocols.docking.DockingLowRes: Acceptance rate is: 0.04
---------------------------------------------------------------------------
KeyboardInterrupt                         Traceback (most recent call last)
<ipython-input-24-816da8ffa34d> in <module>()
      3     cen_pose.assign(starting_cen_pose)
      4     dock_lowres.apply(cen_pose)
----> 5     jd.output_decoy(cen_pose)

~/Computational Protein Prediction and Design/PyRosetta4.Release.python36.mac.release-208/pyrosetta/toolbox/py_jobdistributor.py in output_decoy(self, pose)
    130                 os.remove(self.current_in_progress_name)
    131 
--> 132             self.start_decoy()

~/Computational Protein Prediction and Design/PyRosetta4.Release.python36.mac.release-208/pyrosetta/toolbox/py_jobdistributor.py in start_decoy(self)
     91             self.current_in_progress_name = self.current_name + ".in_progress"
     92 
---> 93             if (not os.path.isfile(self.current_name)) and (not os.path.isfile(self.current_in_progress_name)):
     94                 with open(self.current_in_progress_name, "w") as f:
     95                     f.write("This decoy is in progress.")

/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/genericpath.py in isfile(path)
     28     """Test whether a path is a regular file"""
     29     try:
---> 30         st = os.stat(path)
     31     except OSError:
     32         return False

KeyboardInterrupt: 

High-Resolution Docking

The high-resolution stage of RosettaDock is also available as a Mover. This mover encompasses random rigid-body moves, side-chain packing, and gradient-based minimization in the rigid-body coordinates. High-resolution docking needs an all-atom score function. The optimized docking weights are available as a patch to the standard all-atom energy function.

scorefxn_high = create_score_function("ref2015.wts", "docking")
dock_hires = DockMCMProtocol()
dock_hires.set_scorefxn(scorefxn_high)
dock_hires.set_partners("A_B")  # make sure the FoldTree is set up properly

Note that unlike for DockingLowRes, we must supply the docking partners with "A_B" instead of jump_num.

In [ ]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    scorefxn_high = create_score_function("ref2015.wts", "docking")
    dock_hires = DockMCMProtocol()
    dock_hires.set_scorefxn(scorefxn_high)
    dock_hires.set_partners("A_B")  # make sure the FoldTree is set up properly
    ### END SOLUTION

A high-resolution decoy needs side chains. One way to place the side chains is to call the PackMover, which will generate a conformation from rotamers. A second way is to copy the side chains from the original monomer structures. This is often helpful for docking calculations since the monomer crystal structures have good side chain positions.

recover_sidechains = ReturnSidechainMover(starting_pose)
recover_sidechains.apply(pose)
In [ ]:
if not os.getenv("DEBUG"):
    ### BEGIN SOLUTION
    recover_sidechains = ReturnSidechainMover(starting_pose)
    recover_sidechains.apply(pose)
    ### END SOLUTION

Load one of your low-resolution decoys, add the side chains from the starting pose, and refine the decoy using high-resolution docking.

Question: How far did the structure move during refinement? How much did the score improve?

In [ ]:
 

Starting from your lowest-scoring low-resolution decoy, create three high-resolution decoys. (You might use the PyJobDistributor.) Do the same starting from the native structure.

Questions:

  • How do the refined-native scores compare to the refined-decoy scores?

  • What is the RMSD of the refined native? Why is it not zero?

  • How much variation do you see in the refined native scores? In the refined decoy scores? Is the difference between the refined natives and the refined decoys significant?

In [ ]:
 

Docking Funnel

Using a PyJobDistributor and DockMCMProtocol, create 10 decoys starting with a RigidBodyRandomizeMover perturbation of partner_downstream, 10 decoys starting from different local random perturbations (8°, 3 Å), 10 decoys starting from low-resolution decoys, and 10 starting from the native structure. Plot all of these points on a funnel plot.

Question: How is the sampling from each method? Does the scoring function discriminate good complexes?

In [ ]:
 

Programming Exercises

  • Output a structure with a 10 Å translation and another with a 30° rotation (both starting from the same starting structure), and load them into PyMOL to confirm the motions are what you expect.
  • Diffusion. Make a series of random rigid body perturbations and record the RMSD after each. Plot RMSD versus the number of moves. Does this process emulate diffusion? If it did, how would you know? (Hint: there is a way to plot these data to make them linear.)
  • Starting from a low-resolution docking decoy, refine the structure in three separate ways:

    • side-chain packing

    • gradient-based minimization in the rigid-body coordinates

    • gradient-based minimization in the torsional coordinates

    • the docking high-resolution protocol

For each, note the change in RMSD and the change in score. Which operations move the protein the most? Which make the most difference in the score?

  • Using the MonteCarlo object, the RigidBodyMover, PackRotamers, and the MinMover, create your own high-resolution docking protocol. Bonus: Can you tune it to beat the standard protocol? “Beating” the standard protocol could mean achieving lower energies, running in faster time, and/or being able to better predict complexes.
In [ ]: