!head /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results.txt

!sed 's/"//g' </Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results.txt> /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_a.txt
!head /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_a.txt

#removing header
!tail -n +2 /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_a.txt > /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_b.txt
!head /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_b.txt


!sed 's/seastar/Phel/g' </Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_b.txt> /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_c.txt
!head /Users/sr320/Dropbox/Steven/eimd/data/deseq2_sig_results_c.txt

#file downloaded from SQLshare join
!head /Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.csv

!tr ',' "\t" </Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.csv> /Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.txt

!head /Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.txt

!awk '{print $10}' /Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.txt 

!awk '{print $10}' /Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.txt | uniq 

!wc -l /Users/sr320/Dropbox/Steven/eimd/data/Phel_Deseq_SP.txt 

!head /Users/sr320/Dropbox/Steven/eimd/data/Phel_clc_blastx_uniprot_sprot_sqlready.tab

!awk '{print $3}' /Users/sr320/Dropbox/Steven/eimd/data/blast_output/Phel_clc_blastx_uniprot_sprot_sqlready.tab | pbcopy 

pwd

cd ..


cd data


!curl -O http://david.abcc.ncifcrf.gov/data/download/chart_EA61531C2B4A1407365629460.txt

!head chart_EA61531C2B4A1407365629460.txt

!wc -l chart_EA61531C2B4A1407365629460.txt

pwd

!wget http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407535638846.txt

!wget http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407536148549.txt

!wget http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407536297603.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407536827905.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407538680797.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407539667252.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407539729186.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/chart_9BC7851772AA1407539807701.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/list_9BC7851772AA1407539915541.txt

!head list_9BC7851772AA1407539915541.txt

!curl -O http://david.abcc.ncifcrf.gov/data/download/t2t_9BC7851772AA1407540291668.txt

!head t2t_9BC7851772AA1407540291668.txt

#with bejamini less than 0.5 - 23 GO terms 

pwd

!head 08014REVIGO_treemap.csv

!head 0814REVIGO_treemap.r