#!/usr/bin/env python # coding: utf-8 # In[1]: import k3d import numpy as np dim = 128 data = np.zeros((dim, dim, dim)) # In[2]: N = 100000 paths = [np.cumsum(np.random.randn(N,3).astype(np.float32), axis=0) for _ in range(3)] # In[3]: for i in range(len(paths)): path = paths[i] minimum = np.min(path, axis=0) maximum = np.max(path, axis=0) paths[i] = (path - minimum) / np.max(maximum-minimum) # In[4]: plot = k3d.plot() plot.display() # In[5]: lines = [] for i, path in enumerate(paths): lines.append(k3d.line(100.0 * path, width=0.001, color=k3d.nice_colors[i])) plot += lines[i] # In[6]: for i, path in enumerate(paths): indices = np.fix((dim-1) * path).astype(np.uint16) data[(indices[:,2], indices[:,1], indices[:,0])] = i + 1 dense_data = data.astype(np.uint8) dense_voxels = k3d.voxels(dense_data, bounds=[0, 100, 0, 100, 0, 100], compression_level=1) plot += dense_voxels # In[7]: for i, path in enumerate(paths): plot -= lines[i] # In[8]: sparse_data = [] for val in np.unique(dense_data): if val != 0: x, y, z = np.where(dense_data==val) sparse_data.append(np.dstack((x, y, z, np.full(x.shape, val))).reshape(-1,4).astype(np.uint16)) sparse_data = np.vstack(sparse_data) # In[9]: plot -= dense_voxels dense_data.nbytes / (1024 ** 2), sparse_data.nbytes / (1024 ** 2) # In[10]: sparse_voxels = k3d.sparse_voxels(sparse_data, [dim, dim, dim], bounds=[0, 100, 0, 100, 0, 100], compression_level=1) plot += sparse_voxels # Edit object (add/remove some voxels) # In[ ]: sparse_voxels.fetch_data('sparse_voxels') # In[ ]: sparse_voxels.sparse_voxels.shape # In[ ]: sparse_voxels.sparse_voxels # In[ ]: