These are the notebooks for the Python with Bioinformatics Cookbook.
Click here for the datasets used in the book. You only need this if you do not use the notebooks (as the notebooks will take care of the data)
Depending on your Python version, some content might not be available. Lets test that:
import platform
major, minor, patch = platform.python_version_tuple()
if major == '3':
print('Python 3: The Phylogenomics module will not work, but all the Big Data content will')
else:
print('Python 2: The Phylogenomics module will work, but some Big Data content will not')
Python 3: The Phylogenomics module will not work, but all the Big Data content will
The code for the PyMol recipe can be found on the pymol directory of the github project