In [1]:
!date
Tue Mar  8 13:05:43 PST 2016
In [2]:
%%bash
system_profiler SPSoftwareDataType
Software:

    System Software Overview:

      System Version: OS X 10.9.5 (13F34)
      Kernel Version: Darwin 13.4.0
      Boot Volume: Hummingbird
      Boot Mode: Normal
      Computer Name: hummingbird
      User Name: Sam (Sam)
      Secure Virtual Memory: Enabled
      Time since boot: 108 days 22:56

In [3]:
cd /Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/
/Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2
Find all FASTQ files with "Undetermined" in file name
In [6]:
%%bash
find . -name '*Undetermined*.gz'
./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual6/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz
Rename each undetermined file to contain specific sequencing info
In [7]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane1/AHCTVKBCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz
In [9]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane2/AHCTVKBCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz
In [10]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/AHCTVKBCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
In [11]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane2/AHCTVKBCXX_UnalignedDual5_lane2_Undetermined_L002_R1_001.fastq.gz
In [12]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/AHCTVKBCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
In [13]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane2/AHCTVKBCXX_UnalignedDual7_lane2_Undetermined_L002_R1_001.fastq.gz
In [14]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/AHCTVKBCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
In [15]:
%%bash
mv ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz ./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane2/AHCTVKBCXX_UnalignedDual8_lane2_Undetermined_L002_R1_001.fastq.gz
In [16]:
%%bash
mv ./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane1/AHFYH7BCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz
In [17]:
%%bash
mv ./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane2/lane2_Undetermined_L002_R1_001.fastq.gz ./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane2/AHFYH7BCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz
In [18]:
%%bash
mv ./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/AHFYH7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
In [19]:
%%bash
mv ./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/AHFYH7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
In [20]:
%%bash
mv ./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/AHFYH7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
In [21]:
%%bash
mv ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
In [22]:
%%bash
mv ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual6/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual6/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual6_lane1_Undetermined_L001_R1_001.fastq.gz
In [23]:
%%bash
mv ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
In [24]:
%%bash
mv ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/lane1_Undetermined_L001_R1_001.fastq.gz ./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz

Search for FASTQ files beginning with "lane" (i.e. the old filenames)

In [25]:
%%bash
find . -name 'lane*.gz'
Verify new file names
In [26]:
%%bash
find . -name '*Undetermined*.gz'
./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane1/AHCTVKBCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/Unaligned6/Undetermined_indices/Sample_lane2/AHCTVKBCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/AHCTVKBCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual5/Undetermined_indices/Sample_lane2/AHCTVKBCXX_UnalignedDual5_lane2_Undetermined_L002_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/AHCTVKBCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual7/Undetermined_indices/Sample_lane2/AHCTVKBCXX_UnalignedDual7_lane2_Undetermined_L002_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/AHCTVKBCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
./151217_SN1123_0455_AHCTVKBCXX/UnalignedDual8/Undetermined_indices/Sample_lane2/AHCTVKBCXX_UnalignedDual8_lane2_Undetermined_L002_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane1/AHFYH7BCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/Unaligned6/Undetermined_indices/Sample_lane2/AHFYH7BCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/AHFYH7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/AHFYH7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
./151218_SN1123_0456_AHFYH7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/AHFYH7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual5/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual6/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual6_lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual7/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
./151221_SN1123_0457_AHCTV7BCXX/UnalignedDual8/Undetermined_indices/Sample_lane1/AHCTV7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
Copy files to Owl/nightingales/O_lurida/2bRAD_Dec2015
In [28]:
%%bash
find . -name '*Undetermined*.gz' -exec cp '{}' /Volumes/nightingales/O_lurida/2bRAD_Dec2015/ \;
Verify files copied
In [29]:
%%bash
ls /Volumes/nightingales/O_lurida/2bRAD_Dec2015/*Undetermined*.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTV7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTV7BCXX_UnalignedDual6_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTV7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTV7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_UnalignedDual5_lane2_Undetermined_L002_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_UnalignedDual7_lane2_Undetermined_L002_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHCTVKBCXX_UnalignedDual8_lane2_Undetermined_L002_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHFYH7BCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHFYH7BCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHFYH7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHFYH7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/AHFYH7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane2_Undetermined_L002_R1_001.fastq.gz
Check for old "Undetermined" FASTQ files in Owl/nightingales/O_lurida/2bRAD_Dec2015
In [30]:
%%bash
ls /Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane*.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane1_Undetermined_L001_R1_001.fastq.gz
/Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane2_Undetermined_L002_R1_001.fastq.gz
Delete old "Undetermined" FASTQ files
In [31]:
%%bash
rm /Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane*.gz
Verify deletion
In [32]:
%%bash
ls /Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane*.gz
ls: /Volumes/nightingales/O_lurida/2bRAD_Dec2015/lane*.gz: No such file or directory
Generate checksums.
In [1]:
%%bash

#For loop generates a md5 checksum hash value for each file
#and appends the output to the checksums.md5 file.
time for file in /Volumes/nightingales/O_lurida/2bRAD_Dec2015/*Undetermined*.gz
    do
        md5 "$file" >>/Volumes/nightingales/O_lurida/2bRAD_Dec2015/checksums.md5
        done
real	52m51.012s
user	5m48.627s
sys	1m38.324s
Calculate number of reads per file and, append filename and corresponding number of reads to readme file
In [2]:
%%bash

#For loop counts the lines in each file and divides them by four. This is performed because
#Illumina sequencing files are composed of four lines per read.
#Format the output (printf) to print the filename, followed by a tab, followed by the readcount.
#The command "tee -a" is used to both print the output to the screen and append the output to the readme.md file.
time for file in /Volumes/nightingales/O_lurida/2bRAD_Dec2015/*Undetermined*.gz
    do linecount=`gunzip -c "$file" | wc -l`
    readcount=$(($linecount/4))
    printf "%s\t%s\n\n" "${file##*/}" "$readcount" | tee -a /Volumes/nightingales/O_lurida/2bRAD_Dec2015/readme.md
done
AHCTV7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz	155722611

AHCTV7BCXX_UnalignedDual6_lane1_Undetermined_L001_R1_001.fastq.gz	161584091

AHCTV7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz	144750481

AHCTV7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz	175267582

AHCTVKBCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz	115549984

AHCTVKBCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz	141164573

AHCTVKBCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz	135581455

AHCTVKBCXX_UnalignedDual5_lane2_Undetermined_L002_R1_001.fastq.gz	156456924

AHCTVKBCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz	138863398

AHCTVKBCXX_UnalignedDual7_lane2_Undetermined_L002_R1_001.fastq.gz	152625882

AHCTVKBCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz	156527984

AHCTVKBCXX_UnalignedDual8_lane2_Undetermined_L002_R1_001.fastq.gz	183575566

AHFYH7BCXX_Unaligned6_lane1_Undetermined_L001_R1_001.fastq.gz	123225782

AHFYH7BCXX_Unaligned6_lane2_Undetermined_L002_R1_001.fastq.gz	175194657

AHFYH7BCXX_UnalignedDual5_lane1_Undetermined_L001_R1_001.fastq.gz	139242901

AHFYH7BCXX_UnalignedDual7_lane1_Undetermined_L001_R1_001.fastq.gz	125091422

AHFYH7BCXX_UnalignedDual8_lane1_Undetermined_L001_R1_001.fastq.gz	146618279

real	122m33.043s
user	58m13.020s
sys	6m29.226s
Compress raw data folder provided by Genewiz & put in nightingales project folder
In [1]:
%%bash
time tar -cvzf /Volumes/nightingales/O_lurida/2bRAD_Dec2015/Project_BS1511196_R2_02.tar.gz /Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/
tar: Removing leading '/' from member names
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/.listing
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151217_SN1123_0455_AHCTVKBCXX_Data_Summary_Report.xlsx
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151217_SN1123_0455_AHCTVKBCXX_Data_Summary_Report_new.xlsx
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151218_SN1123_0456_AHFYH7BCXX_Data_Summary_Report.xlsx
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151218_SN1123_0456_AHFYH7BCXX_Data_Summary_Report_new.xlsx
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151221_SN1123_0457_AHCTV7BCXX_Data_Summary_Report.xlsx
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151221_SN1123_0457_AHCTV7BCXX_Data_Summary_Report_new.xlsx
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/UofWashington_GENEWIZ-NGS-Data-Report.pdf
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151217_SN1123_0455_AHCTVKBCXX
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151218_SN1123_0456_AHFYH7BCXX
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151221_SN1123_0457_AHCTV7BCXX
a Volumes/owl_home/Project_BS1511196_R2_02/ftp2.genewiz.com/Project_BS1511196_R2/151221_SN1123_0457_AHCTV7BCXX/.listing
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