Install the DRILSDOWN package. The cell below installs the DRILSDOWN package and its dependencies in your existing environment, using this tactic.
import sys
!{sys.executable} -m pip install drilsdown --upgrade ### install or upgrade pip package
#NO CONDA YET... !conda install --yes --prefix {sys.prefix} drilsdown ### for conda package
Requirement already up-to-date: drilsdown in /anaconda/envs/drilsdown/lib/python3.6/site-packages (2.4.8)
Requirement not upgraded as not directly required: jython-kernel in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (2.0)
Requirement not upgraded as not directly required: ipython-IDV>=2.4.8' in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (2.4.8)
Requirement not upgraded as not directly required: cartopy in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (0.16.0)
Requirement not upgraded as not directly required: ipykernel in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (4.8.2)
Requirement not upgraded as not directly required: geoviews in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (1.5.2)
Requirement not upgraded as not directly required: ipywidgets>=7.1.0rc in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (7.2.1)
Requirement not upgraded as not directly required: future in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (0.16.0)
Requirement not upgraded as not directly required: xarray in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (0.10.8)
Requirement not upgraded as not directly required: ramadda-publish in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (1.3)
Requirement not upgraded as not directly required: jupyter-client in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (5.2.3)
Requirement not upgraded as not directly required: holoviews in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (1.10.7)
Requirement not upgraded as not directly required: MetPy in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (0.8.0)
Requirement not upgraded as not directly required: idv-teleport in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (1.6)
Requirement not upgraded as not directly required: six in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (1.11.0)
Requirement not upgraded as not directly required: pyviz in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from drilsdown) (0.9.9)
Requirement not upgraded as not directly required: IPython>=3.0 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from jython-kernel->drilsdown) (6.4.0)
Requirement not upgraded as not directly required: pyshp>=1.1.4 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from cartopy->drilsdown) (1.2.12)
Requirement not upgraded as not directly required: shapely>=1.5.6 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from cartopy->drilsdown) (1.6.4.post1)
Requirement not upgraded as not directly required: numpy>=1.6 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from cartopy->drilsdown) (1.14.5)
Requirement not upgraded as not directly required: setuptools>=0.7.2 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from cartopy->drilsdown) (39.2.0)
Requirement not upgraded as not directly required: traitlets>=4.1.0 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from ipykernel->drilsdown) (4.3.2)
Requirement not upgraded as not directly required: tornado>=4.0 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from ipykernel->drilsdown) (4.5.3)
Requirement not upgraded as not directly required: bokeh>=0.12.15 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from geoviews->drilsdown) (0.13.0)
Requirement not upgraded as not directly required: param>=1.6.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from geoviews->drilsdown) (1.7.0)
Requirement not upgraded as not directly required: widgetsnbextension~=3.2.0 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from ipywidgets>=7.1.0rc->drilsdown) (3.2.1)
Requirement not upgraded as not directly required: nbformat>=4.2.0 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from ipywidgets>=7.1.0rc->drilsdown) (4.4.0)
Requirement not upgraded as not directly required: pandas>=0.19.2 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from xarray->drilsdown) (0.23.1)
Requirement not upgraded as not directly required: jupyter_core in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from jupyter-client->drilsdown) (4.4.0)
Requirement not upgraded as not directly required: pyzmq>=13 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from jupyter-client->drilsdown) (17.0.0)
Requirement not upgraded as not directly required: python-dateutil>=2.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from jupyter-client->drilsdown) (2.7.3)
Requirement not upgraded as not directly required: pyviz_comms in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from holoviews->drilsdown) (0.5.0)
Requirement not upgraded as not directly required: scipy>=0.14 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from MetPy->drilsdown) (1.1.0)
Requirement not upgraded as not directly required: pint>=0.8 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from MetPy->drilsdown) (0.8.1)
Requirement not upgraded as not directly required: matplotlib>=1.4 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from MetPy->drilsdown) (2.2.2)
Requirement not upgraded as not directly required: simplegeneric>0.8 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (0.8.1)
Requirement not upgraded as not directly required: pygments in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (2.2.0)
Requirement not upgraded as not directly required: prompt-toolkit<2.0.0,>=1.0.15 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (1.0.15)
Requirement not upgraded as not directly required: pexpect; sys_platform != "win32" in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (4.6.0)
Requirement not upgraded as not directly required: appnope; sys_platform == "darwin" in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (0.1.0)
Requirement not upgraded as not directly required: decorator in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (4.3.0)
Requirement not upgraded as not directly required: pickleshare in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (0.7.4)
Requirement not upgraded as not directly required: jedi>=0.10 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (0.12.0)
Requirement not upgraded as not directly required: backcall in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from IPython>=3.0->jython-kernel->drilsdown) (0.1.0)
Requirement not upgraded as not directly required: ipython-genutils in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from traitlets>=4.1.0->ipykernel->drilsdown) (0.2.0)
Requirement not upgraded as not directly required: PyYAML>=3.10 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from bokeh>=0.12.15->geoviews->drilsdown) (3.12)
Requirement not upgraded as not directly required: Jinja2>=2.7 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from bokeh>=0.12.15->geoviews->drilsdown) (2.10)
Requirement not upgraded as not directly required: packaging>=16.8 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from bokeh>=0.12.15->geoviews->drilsdown) (17.1)
Requirement not upgraded as not directly required: notebook>=4.4.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (5.5.0)
Requirement not upgraded as not directly required: jsonschema!=2.5.0,>=2.4 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from nbformat>=4.2.0->ipywidgets>=7.1.0rc->drilsdown) (2.6.0)
Requirement not upgraded as not directly required: pytz>=2011k in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from pandas>=0.19.2->xarray->drilsdown) (2018.4)
Requirement not upgraded as not directly required: cycler>=0.10 in /anaconda/envs/drilsdown/lib/python3.6/site-packages/cycler-0.10.0-py3.6.egg (from matplotlib>=1.4->MetPy->drilsdown) (0.10.0)
Requirement not upgraded as not directly required: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from matplotlib>=1.4->MetPy->drilsdown) (2.2.0)
Requirement not upgraded as not directly required: kiwisolver>=1.0.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from matplotlib>=1.4->MetPy->drilsdown) (1.0.1)
Requirement not upgraded as not directly required: wcwidth in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from prompt-toolkit<2.0.0,>=1.0.15->IPython>=3.0->jython-kernel->drilsdown) (0.1.7)
Requirement not upgraded as not directly required: ptyprocess>=0.5 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from pexpect; sys_platform != "win32"->IPython>=3.0->jython-kernel->drilsdown) (0.6.0)
Requirement not upgraded as not directly required: parso>=0.2.0 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from jedi>=0.10->IPython>=3.0->jython-kernel->drilsdown) (0.2.1)
Requirement not upgraded as not directly required: MarkupSafe>=0.23 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from Jinja2>=2.7->bokeh>=0.12.15->geoviews->drilsdown) (1.0)
Requirement not upgraded as not directly required: nbconvert in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (5.3.1)
Requirement not upgraded as not directly required: Send2Trash in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (1.5.0)
Requirement not upgraded as not directly required: terminado>=0.8.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (0.8.1)
Requirement not upgraded as not directly required: entrypoints>=0.2.2 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (0.2.3)
Requirement not upgraded as not directly required: pandocfilters>=1.4.1 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (1.4.2)
Requirement not upgraded as not directly required: mistune>=0.7.4 in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (0.8.3)
Requirement not upgraded as not directly required: testpath in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (0.3.1)
Requirement not upgraded as not directly required: bleach in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (2.1.3)
Requirement not upgraded as not directly required: html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (1.0.1)
Requirement not upgraded as not directly required: webencodings in /anaconda/envs/drilsdown/lib/python3.6/site-packages (from html5lib!=1.0b1,!=1.0b2,!=1.0b3,!=1.0b4,!=1.0b5,!=1.0b6,!=1.0b7,!=1.0b8,>=0.99999999pre->bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.2.0->ipywidgets>=7.1.0rc->drilsdown) (0.5.1)
You are using pip version 10.0.1, however version 18.0 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Create and use our DRILSDOWN environment in Anaconda.
Uncomment and use the cell below to download our environment.yml file. Then, import the environment (it takes a few minutes as packages are installed). Finally, launch jupyter notebook after selecting the DRILSDOWN environment (channel). More in this science-oriented guide to Jupyter notebooks
# The 3 lines here will download DRILSDOWN's environment.yml file
# Then use Navigator to create environment from it as explained above
#import requests
#r = requests.get('https://raw.githubusercontent.com/Unidata/drilsdown/master/environment.yml', allow_redirects=True)
#open('DRILSDOWN_environment.yml', 'wb').write(r.content)
After executing this cell, you should see this Control Panel.
Buttons append their outputs to the Control Panel's results area. Clear Outputs will clear the whole cell.
# Load ipython_IDV extension. If successful, It will make a user interface (Control Panel) widget.
%reload_ext ipython_IDV
VBox(children=(HTML(value='<h3>ipython_IDV Control Panel</h3>'), HBox(children=(HTML(value='<b>Resources:</b>'…
Linux users may need to set a path for the Launch IDV button to work
Perhaps by loading a bundle from our MapesIDVcollection or some other Catalog, or uncomment the following cell for a standard example.
# If you want to load a standard illustration bundle, uncomment this command
#%load_bundle https://geodesystems.com/repository/entry/get/example_grid.xidv?entryid=4728e5eb-fa89-4af8-8162-e2f66a9cd0c9
%reload_ext ipython_IDV
VBox(children=(HTML(value='<h3>ipython_IDV Control Panel</h3>'), HBox(children=(HTML(value='<b>Resources:</b>'…
%make_movie -capture legend -caption "This shows that jet streams flow above temperature gradients"
%make_movie -capture legend -caption "My great movie"
%save_bundle -embed
HTML(value='<a target=_bundle download="idv.xidv" href="data:text/xidv;name=idv.xidv;base64,PD94bWwgdmVyc2lvbj…
from ipython_IDV import Idv
data = Idv.export_data(display_id='windspeed')
windspeed=data.variables['WindSpeed']
print(windspeed)
<class 'netCDF4._netCDF4.Variable'> float32 WindSpeed(time, level, y, x) units: meters/second grid_mapping: lambert_conformal_conic unlimited dimensions: current shape = (2, 19, 65, 93) filling off
maybe ours
In your IDV, install the RAMADDA publisher plugin.
Publisher-->Configure like this
Select the "publish" checkbox in the ipython_IDV Control Panel, and click Make Image button. Then follow the dialog in the IDV session, finding a folder that you have permissions in (like the Contributed folder). An actual example created this way is here.
%reload_ext ipython_IDV
In the future, other services could be added to this specific entry type (like composite averages of a set of identically-shaped .zidv files).
%publish_notebook "http://weather.rsmas.miami.edu/repository/entry/show?entryid=e322e383-f409-41ee-b50f-e6d3be3625c1"
# Publish in the Contributed folder,
# http://weather.rsmas.miami.edu/repository/entry/show?entryid=e322e383-f409-41ee-b50f-e6d3be3625c1
from ipython_IDV import Ramadda
RAM = Ramadda("http://weather.rsmas.miami.edu/repository/entry/show?entryid=e322e383-f409-41ee-b50f-e6d3be3625c1")
# USER and PASSWORD can be blank for that Contributed folder
import os
os.environ['RAMADDA_USER'] = ""
os.environ['RAMADDA_PASSWORD'] = ""
RAM.publish('Test_Publish', file="./Install_and_demo.ipynb")
idv_teleport is DRILSDOWN's Python and command-line scripting tool to batch-generate one, or a set (folder) of data-zipped (.zidv) bundles with user-defined time range and bounding box, like this set.
The -h or -help argument explains its use, or see the repo.
ramadda_publish publishes files or folders to a RAMADDA. If your folder contains .ipynb notebooks, and is tagged as a DRILSDOWN Case Study, it will be displayed like this library of Case Studies.
Again the -h argument or the repo explains its use.
# Time stamp this notebook
!date
Wed Jun 20 15:20:13 MDT 2018