ANS656

Statistical Methods for Mapping Quantitative Trait Loci

Welcome to ANS656.

The note is entirely written inside IJulia notebooks.

Juliabox is used in ANS656.

Why notebook?

About ANS656

Content

  • Section 1:   Basic

    • 1.1   Map Funtions
    • 1.2   Computation of Recombination Probabilities
    • 1.3   Linkage Disequilibrium

  • Section 2:   Bayesian Methods

    • 2.1   Bayesian Theorem
    • 2.2   Bayesian Inference
    • 2.3   Markov Chain Monte-Carlo Methods
    • 2.4   Bayesian Inference by Application to Simple Linear Regression
    • 2.5   Extension to Multiple Linear Regression
    • 2.6   Bayesian Regression Models for Whole-Genome Analyses

  • Section 3:   Single Step

    • 3.1   Single-Step GBLUP
    • 3.2   Single-Step Bayesian Regression

  • Section 4:   Solutions

    • 4.1   Bayesian Inference by Application to Simple Linear Regression
    • 4.2   Extension to Multiple Linear Regression