Welcome to the ImageJ tutorial series. These notebooks offer a hands-on series of lessons for learning ImageJ.
For a quick demo of what ImageJ can do, just scroll down!
To dive in to the tutorials, click the links below. If ImageJ is new to you, please try the "Using ImageJ" notebooks first.
For a thorough academic overview of the ImageJ software stack, including its features, history, motivation and goals, see:
Rueden CT et al. "ImageJ2: ImageJ for the next generation of scientific image data." BMC Bioinformatics 18:529 (29 November 2017).
Feedback is very welcome! Please share your ideas on the ImageJ Forum!
#@ImageJ ij // Behind a firewall? Configure your proxy settings here. //System.setProperty("http.proxyHost","myproxy.domain") //System.setProperty("http.proxyPort","8080") "ImageJ is ready to go."
ImageJ is ready to go.
sourcePath = "http://imagej.net/images" //sourcePath = System.getProperty("user.home") + "/data" cells = ij.io().open(sourcePath + "/FluorescentCells.jpg") mandrill = ij.io().open(sourcePath + "/baboon.jpg") [["cells":cells, "mandrill":mandrill]]
[INFO] Populating metadata [INFO] Populating metadata [INFO] Populating metadata [INFO] Populating metadata