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biom262-2016
weeks
week04
Notebook
Homework
¶
Run (1) Alignment/mapping with STAR (2) Samtools view/sort/index (3) featurecounts (4) kallisto on the S13 sample
Turn in this notebook:
compare the kallisto and featurecounts algorithms
as a pull request on the biom262-2016 repo for the branch "week04."
Note: You don't need S13 until Exercise 11 in the notebook, so you can start doing this analysis while you're waiting for the S13 stuff to finish running.