Name Notebooks Description
b7206060986f36737b7826b55096ce8d bio450-python-pt4-translation.ipynb
681c1c20ea834edcf2cb834b206c22ce qiime2-issue190.ipynb QIIME 2 issue #190 example
2a7b5f316a111e81910f0f19f7304a33 jgcaporaso-qiime2-scipy2016.ipynb QIIME 2 demo at SciPy2016
d4b0dd71d72e9c864989a1ff4545991d qiime-exercise.ipynb Final assignment for BIO/CS 499/599 (Spring 2016)
c2011db0c2bb17f6621b q2d3-test.ipynb
edbe4135dd870bb606f9 artifact-demo.ipynb
7a141d6c30e621ae6351 iab-ipynb-to-md.ipynb Used for gregcaporaso/An-Introduction-to-Applied-Bioinformatics#140 to convert the ipython notebooks to markdown files.
8cc4cf3e347b7158cd06 networkx-dna-test.ipynb networkx experiment
7cfeab8c15755d96a05a assignment-5.ipynb BIO/CS 290, BIO 599 Assignment 5: Spring 2015
24defc02cfbc9f9411c5 pynast-reference-comparison.ipynb Comparison of using GG 13_8 versus Greengenes core set as the default reference for PyNAST
daa5d12f2ead26c711d6 180-dev.ipynb 180.ipynb comparison of runtime for single_rarefaction.py in QIIME 1.8.0 and 1.8.0-dev
1d6d1d087f17a99d456e neighbor-joining-experiments.ipynb initial experiments with implementing neighbor joining for scikit-bio
900316343f693e4b7c8d simple-illustration.ipynb taxa-collapsing-discrepancy.ipynb taxa collapsing discrepancy
10014176 pandas-v-qiime-mapping-files.ipynb exploring using pandas for QIIME mapping files