#!/usr/bin/env python # coding: utf-8 # **Source of the materials**: Biopython cookbook (adapted) # Status: Draft #

# # Biopython # Tutorial and Cookbook # -------------------- # [1 - Introduction](01%20-%20Introduction.ipynb) # # [2 - Quick Start](02%20-%20Quick%20Start.ipynb) # # [3 - Sequence Objects](03%20-%20Sequence%20Objects.ipynb) # # [4 - Sequence Annotation objects](04%20-%20Sequence%20Annotation%20objects.ipynb) # # [5 - Sequence Input and Output](05%20-%20Sequence%20Input%20and%20Output.ipynb) # # [6 - Multiple Sequence Alignment objects](06%20-%20Multiple%20Sequence%20Alignment%20objects.ipynb) # # [7 - Blast](07%20-%20Blast.ipynb) # # [8 - BLAST and other sequence search tools (experimental code)](08%20-%20BLAST%20and%20other%20sequence%20search%20tools%20(experimental%20code).ipynb) # # [9 - Accessing NCBI’s Entrez databases](09%20-%20Accessing%20NCBIs%20Entrez%20databases.ipynb) # # [10 - Swiss-Prot and ExPASy](10%20-%20Swiss-Prot%20and%20ExPASy.ipynb) # # [11 - Going 3D - The PDB module](11%20-%20Going%203D%20-%20The%20PDB%20module.ipynb) # # [12 - Bio.PopGen - Population Genetics](12%20-%20Bio.PopGen%20-%20Population%20Genetics.ipynb) # # [13 - Phylogenetics with Bio.Phylo](13%20-%20Phylogenetics%20with%20Bio.Phylo.ipynb) # # [14 - Sequence motif analysis using Bio.motifs](14%20-%20Sequence%20motif%20analysis%20using%20Bio.motifs.ipynb) # # [15 - Cluster Analysis](15%20-%20Cluster%20Analysis.ipynb) # # [16 - Supervised learning methods](16%20-%20Supervised%20learning%20methods.ipynb) # # [17 - Graphics including GenomeDiagram](17%20-%20Graphics%20including%20GenomeDiagram.ipynb) # # [18 - KEGG](18%20-%20KEGG.ipynb) # # [19 - Cookbook – Cool things to do with it](19%20-%20Cookbook%20-%20Cool%20things%20to%20do%20with%20it.ipynb) # # [20 - The Biopython testing](20%20-%20The%20Biopython%20testing.ipynb) # # [21 - Advanced](21%20-%20Advanced.ipynb) # # [22 - Where to go from here – contributing to Biopython](22%20-%20Where%20to%20go%20from%20here%20-%20contributing%20to%20Biopython.ipynb) # # [23 - Appendix, Useful stuff about Python](23%20-%20Appendix%2C%20Useful%20stuff%20about%20Python.ipynb) # # [Credits](99%20-%20Credits.ipynb) # # [References](99%20-%20References.ipynb) # # In[ ]: