#!/usr/bin/env python
# coding: utf-8

# The American Gut Project is compiling processing IPython Notebooks of interesting analyses. This index Notebook provides links to the subsequent Notebooks and will be updated as more analyses are added.
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# **Notebooks working with Sequence Data**
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# * Primary processing pipeline [Notebook](module2_v1.0.ipynb)
# * Filter bloom sequences [Notebook](FilterAndPickOTUs.ipynb)
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# **OTU Table and Metadata Manipulation**
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# * Preprocessing and Subset Generation [Notebook](Preprocessing.ipynb)
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# **Analyses Across Categories**
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# * Alpha diversity analysis [Notebook](Alpha%20diversity%20notebook.ipynb)
# * Shared OTUs [Notebook](shared_otus.ipynb)
# * Statistical Power and Effect Size [Notebook](power.ipynb)